Query psy18009
Match_columns 277
No_of_seqs 320 out of 2619
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:57:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1129 MglA ABC-type sugar tr 100.0 1.4E-40 3.1E-45 323.5 20.0 198 43-240 127-396 (500)
2 COG3845 ABC-type uncharacteriz 100.0 6.5E-36 1.4E-40 287.4 18.9 199 43-241 122-399 (501)
3 KOG0055|consensus 100.0 5.3E-33 1.2E-37 289.9 19.0 140 2-141 322-569 (1228)
4 PRK10762 D-ribose transporter 100.0 3.9E-32 8.5E-37 267.3 20.2 193 43-235 123-385 (501)
5 PRK09700 D-allose transporter 100.0 6.3E-32 1.4E-36 266.2 20.0 193 43-235 127-399 (510)
6 PRK10982 galactose/methyl gala 100.0 6.5E-32 1.4E-36 265.0 19.9 193 43-235 116-381 (491)
7 PRK11288 araG L-arabinose tran 100.0 8.5E-32 1.8E-36 264.9 19.6 192 44-235 123-386 (501)
8 PRK13549 xylose transporter AT 100.0 2.7E-31 5.9E-36 261.6 20.6 193 43-235 125-395 (506)
9 PRK15439 autoinducer 2 ABC tra 100.0 3.6E-31 7.9E-36 261.2 21.1 193 43-235 122-393 (510)
10 TIGR02633 xylG D-xylose ABC tr 100.0 9.9E-31 2.1E-35 257.0 20.1 193 43-235 122-393 (500)
11 PRK15134 microcin C ABC transp 100.0 9.3E-31 2E-35 259.1 19.6 192 43-235 135-415 (529)
12 COG1123 ATPase components of v 100.0 7.1E-31 1.5E-35 257.5 18.3 193 43-235 134-419 (539)
13 PRK10261 glutathione transport 100.0 1.2E-30 2.5E-35 263.4 20.3 192 44-235 148-453 (623)
14 PRK10938 putative molybdenum t 100.0 3.1E-30 6.8E-35 252.9 18.6 194 43-236 117-392 (490)
15 TIGR03269 met_CoM_red_A2 methy 100.0 4.4E-30 9.6E-35 253.6 18.6 193 44-236 151-414 (520)
16 COG4172 ABC-type uncharacteriz 100.0 5.3E-30 1.1E-34 242.0 16.2 177 62-239 158-420 (534)
17 KOG0058|consensus 100.0 1.3E-30 2.9E-35 259.9 12.5 146 2-148 439-691 (716)
18 COG2274 SunT ABC-type bacterio 100.0 3.4E-29 7.3E-34 254.9 13.1 147 2-148 444-696 (709)
19 KOG0055|consensus 100.0 6.4E-29 1.4E-33 259.5 12.9 147 2-148 959-1213(1228)
20 KOG0056|consensus 100.0 4.7E-29 1E-33 239.8 10.2 149 1-149 509-762 (790)
21 COG1126 GlnQ ABC-type polar am 100.0 1.3E-28 2.7E-33 216.7 11.5 101 45-145 120-222 (240)
22 PRK15064 ABC transporter ATP-b 100.0 7.5E-28 1.6E-32 238.4 16.8 179 44-235 137-428 (530)
23 PRK13409 putative ATPase RIL; 99.9 3E-27 6.5E-32 237.3 17.2 180 43-235 194-444 (590)
24 COG1132 MdlB ABC-type multidru 99.9 1.1E-27 2.4E-32 238.8 13.7 146 1-148 302-552 (567)
25 PRK11819 putative ABC transpor 99.9 4.1E-27 8.9E-32 234.7 16.9 178 44-235 147-435 (556)
26 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.9E-27 1.9E-31 232.0 17.3 177 45-235 146-433 (552)
27 PRK11174 cysteine/glutathione 99.9 3.1E-27 6.8E-32 236.2 13.3 145 2-146 322-570 (588)
28 COG5265 ATM1 ABC-type transpor 99.9 3E-27 6.6E-32 224.1 11.5 148 1-148 233-486 (497)
29 PRK10636 putative ABC transpor 99.9 3.5E-26 7.7E-31 231.5 18.0 179 43-235 130-420 (638)
30 PLN03232 ABC transporter C fam 99.9 9E-27 1.9E-31 254.1 14.4 147 1-147 1203-1457(1495)
31 COG1135 AbcC ABC-type metal io 99.9 4.8E-27 1.1E-31 215.8 10.0 105 44-148 124-231 (339)
32 PLN03130 ABC transporter C fam 99.9 1.4E-26 3E-31 253.7 15.1 148 1-148 1206-1461(1622)
33 COG4987 CydC ABC-type transpor 99.9 1.1E-26 2.3E-31 225.7 12.6 144 2-147 311-560 (573)
34 TIGR03375 type_I_sec_LssB type 99.9 2E-26 4.4E-31 234.7 15.2 144 2-145 436-685 (694)
35 PRK11147 ABC transporter ATPas 99.9 2.6E-26 5.5E-31 232.3 15.7 92 43-138 140-232 (635)
36 TIGR00957 MRP_assoc_pro multi 99.9 1.7E-26 3.7E-31 252.2 14.2 147 1-147 1253-1507(1522)
37 TIGR01193 bacteriocin_ABC ABC- 99.9 2.9E-26 6.3E-31 234.1 13.9 144 2-146 446-695 (708)
38 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.7E-26 8E-31 233.3 13.6 144 1-146 443-698 (710)
39 PRK10790 putative multidrug tr 99.9 5.6E-26 1.2E-30 227.5 14.6 142 2-146 316-561 (592)
40 COG1124 DppF ABC-type dipeptid 99.9 4.2E-26 9E-31 203.7 11.2 84 62-145 142-228 (252)
41 COG1122 CbiO ABC-type cobalt t 99.9 3E-26 6.6E-31 206.1 10.0 100 45-144 122-224 (235)
42 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 7.1E-26 1.5E-30 230.5 13.9 141 2-146 426-671 (686)
43 COG1125 OpuBA ABC-type proline 99.9 3.2E-26 6.9E-31 205.8 9.7 100 62-167 136-238 (309)
44 PRK11160 cysteine/glutathione 99.9 9.2E-26 2E-30 225.7 14.2 144 2-146 312-560 (574)
45 PRK13657 cyclic beta-1,2-gluca 99.9 1.5E-25 3.3E-30 224.3 15.0 144 2-145 307-555 (588)
46 PRK11176 lipid transporter ATP 99.9 1.4E-25 3E-30 223.9 14.7 143 2-146 316-565 (582)
47 TIGR00958 3a01208 Conjugate Tr 99.9 1.1E-25 2.5E-30 230.2 13.2 142 2-146 452-700 (711)
48 KOG0054|consensus 99.9 1.8E-25 3.8E-30 237.8 15.0 148 1-148 1107-1362(1381)
49 PLN03073 ABC transporter F fam 99.9 3.9E-25 8.4E-30 226.3 15.6 93 44-138 326-420 (718)
50 COG1120 FepC ABC-type cobalami 99.9 3E-25 6.6E-30 201.3 12.7 114 46-168 123-239 (258)
51 TIGR01846 type_I_sec_HlyB type 99.9 3.8E-25 8.1E-30 225.6 14.3 145 1-146 428-678 (694)
52 COG4988 CydD ABC-type transpor 99.9 3.3E-25 7.1E-30 217.4 13.1 146 2-147 292-542 (559)
53 TIGR01192 chvA glucan exporter 99.9 4.7E-25 1E-29 221.1 14.3 145 2-146 307-556 (585)
54 TIGR01271 CFTR_protein cystic 99.9 5.4E-25 1.2E-29 240.0 15.0 145 2-146 1173-1438(1490)
55 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.5E-25 1.4E-29 198.5 12.1 102 45-147 123-226 (254)
56 COG1127 Ttg2A ABC-type transpo 99.9 3.7E-25 8E-30 197.4 10.3 85 62-146 146-233 (263)
57 KOG0057|consensus 99.9 5.2E-25 1.1E-29 214.3 12.1 121 26-146 348-572 (591)
58 COG3638 ABC-type phosphate/pho 99.9 2.9E-25 6.3E-30 197.6 9.0 84 62-145 148-234 (258)
59 PTZ00243 ABC transporter; Prov 99.9 9.4E-25 2E-29 238.8 14.8 123 25-147 1304-1532(1560)
60 TIGR02203 MsbA_lipidA lipid A 99.9 2E-24 4.4E-29 214.8 14.6 143 2-146 305-554 (571)
61 COG1116 TauB ABC-type nitrate/ 99.9 1.7E-24 3.7E-29 194.3 11.0 95 44-138 113-212 (248)
62 TIGR02204 MsbA_rel ABC transpo 99.9 3.9E-24 8.4E-29 213.1 14.7 144 2-145 309-560 (576)
63 TIGR01842 type_I_sec_PrtD type 99.9 4E-24 8.7E-29 212.3 14.7 140 2-144 292-538 (544)
64 PRK10789 putative multidrug tr 99.9 3.8E-24 8.2E-29 213.8 14.1 143 2-146 288-536 (569)
65 PTZ00265 multidrug resistance 99.9 2E-24 4.4E-29 234.8 13.1 86 62-147 1359-1451(1466)
66 COG1117 PstB ABC-type phosphat 99.9 1.4E-24 2.9E-29 191.0 9.4 84 62-145 150-234 (253)
67 PRK13537 nodulation ABC transp 99.9 1.1E-23 2.3E-28 196.0 13.0 100 45-144 122-223 (306)
68 cd03216 ABC_Carb_Monos_I This 99.9 1.2E-23 2.7E-28 178.4 11.8 109 30-139 1-162 (163)
69 COG4555 NatA ABC-type Na+ tran 99.9 4.8E-24 1E-28 186.1 9.3 86 61-146 133-220 (245)
70 COG2884 FtsE Predicted ATPase 99.9 1E-23 2.3E-28 182.5 10.4 80 62-141 138-219 (223)
71 PRK14257 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 195.6 13.2 85 62-146 226-311 (329)
72 PRK13647 cbiO cobalt transport 99.9 2.8E-23 6.1E-28 190.0 13.0 101 44-144 121-223 (274)
73 KOG0054|consensus 99.9 5.7E-23 1.2E-27 218.8 17.0 136 2-138 491-721 (1381)
74 TIGR02857 CydD thiol reductant 99.9 2.1E-23 4.5E-28 206.2 12.8 129 2-132 295-529 (529)
75 cd03247 ABCC_cytochrome_bd The 99.9 3.4E-23 7.4E-28 177.5 12.4 82 59-140 96-177 (178)
76 cd03369 ABCC_NFT1 Domain 2 of 99.9 5.3E-23 1.2E-27 180.0 13.9 84 59-142 123-206 (207)
77 PRK11650 ugpC glycerol-3-phosp 99.9 2.5E-23 5.4E-28 197.5 12.8 102 44-145 117-221 (356)
78 cd03289 ABCC_CFTR2 The CFTR su 99.9 3E-23 6.5E-28 190.6 12.7 85 62-146 139-223 (275)
79 PRK10522 multidrug transporter 99.9 4.3E-23 9.3E-28 205.2 14.6 138 2-141 297-531 (547)
80 PRK13536 nodulation factor exp 99.9 3.1E-23 6.7E-28 195.8 12.5 84 62-145 173-258 (340)
81 PRK13636 cbiO cobalt transport 99.9 4.5E-23 9.6E-28 189.6 12.8 101 44-144 124-227 (283)
82 cd03214 ABC_Iron-Siderophores_ 99.9 4.8E-23 1E-27 177.1 11.6 116 25-140 51-179 (180)
83 TIGR01194 cyc_pep_trnsptr cycl 99.9 8.2E-23 1.8E-27 203.7 14.8 79 62-140 471-551 (555)
84 TIGR02314 ABC_MetN D-methionin 99.9 3.6E-23 7.8E-28 195.6 11.1 102 44-145 123-227 (343)
85 cd03259 ABC_Carb_Solutes_like 99.9 4.1E-23 8.9E-28 181.3 10.3 98 44-141 113-213 (213)
86 cd03261 ABC_Org_Solvent_Resist 99.9 5.1E-23 1.1E-27 183.4 10.8 100 44-143 119-221 (235)
87 cd03246 ABCC_Protease_Secretio 99.9 8.7E-23 1.9E-27 174.4 11.0 76 62-137 97-173 (173)
88 PRK11614 livF leucine/isoleuci 99.9 1.4E-22 3.1E-27 180.8 12.4 99 46-144 121-222 (237)
89 COG1136 SalX ABC-type antimicr 99.9 7.1E-23 1.5E-27 182.6 10.3 96 43-138 123-221 (226)
90 cd03254 ABCC_Glucan_exporter_l 99.9 2.2E-22 4.7E-27 178.4 13.3 88 56-143 134-221 (229)
91 TIGR02868 CydC thiol reductant 99.9 1.2E-22 2.5E-27 200.9 12.4 119 2-120 305-529 (529)
92 COG1131 CcmA ABC-type multidru 99.9 9.3E-23 2E-27 188.9 10.9 103 43-145 118-223 (293)
93 cd03264 ABC_drug_resistance_li 99.9 9.8E-23 2.1E-27 178.6 10.5 99 43-141 112-211 (211)
94 TIGR01188 drrA daunorubicin re 99.9 1E-22 2.2E-27 188.7 11.2 102 43-144 106-209 (302)
95 cd03256 ABC_PhnC_transporter A 99.9 1.4E-22 3E-27 180.8 11.2 100 44-143 127-229 (241)
96 cd03244 ABCC_MRP_domain2 Domai 99.9 2.9E-22 6.2E-27 176.7 12.9 87 56-142 134-220 (221)
97 cd03226 ABC_cobalt_CbiO_domain 99.9 1.4E-22 3E-27 177.1 10.7 96 43-138 108-205 (205)
98 COG4175 ProV ABC-type proline/ 99.9 6.2E-23 1.3E-27 189.3 8.4 104 43-146 146-252 (386)
99 TIGR00960 3a0501s02 Type II (G 99.9 1.1E-22 2.3E-27 179.0 9.6 95 43-137 120-216 (216)
100 cd03219 ABC_Mj1267_LivG_branch 99.9 1.9E-22 4.2E-27 179.5 11.1 101 43-143 125-227 (236)
101 cd03228 ABCC_MRP_Like The MRP 99.9 2.8E-22 6E-27 171.0 11.4 75 62-136 97-171 (171)
102 cd03232 ABC_PDR_domain2 The pl 99.9 3.7E-22 8.1E-27 173.3 12.4 81 61-141 108-192 (192)
103 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.9E-22 4.1E-27 178.1 10.6 100 44-143 114-218 (220)
104 cd03260 ABC_PstB_phosphate_tra 99.9 2.2E-22 4.7E-27 178.3 11.0 100 44-143 122-224 (227)
105 cd03301 ABC_MalK_N The N-termi 99.9 1.8E-22 3.8E-27 177.1 10.3 98 44-141 113-213 (213)
106 PRK13651 cobalt transporter AT 99.9 2.1E-22 4.6E-27 187.4 11.0 103 43-145 146-251 (305)
107 TIGR01186 proV glycine betaine 99.9 2E-22 4.2E-27 191.9 11.0 102 43-144 111-215 (363)
108 TIGR00972 3a0107s01c2 phosphat 99.9 2.5E-22 5.4E-27 180.4 11.1 101 44-144 123-228 (247)
109 cd03297 ABC_ModC_molybdenum_tr 99.9 2.1E-22 4.6E-27 177.0 10.4 99 43-141 113-214 (214)
110 COG1137 YhbG ABC-type (unclass 99.9 8E-23 1.7E-27 178.4 7.5 103 45-147 123-227 (243)
111 cd03296 ABC_CysA_sulfate_impor 99.9 2.2E-22 4.8E-27 179.9 10.5 101 44-144 119-222 (239)
112 COG3839 MalK ABC-type sugar tr 99.9 2E-22 4.3E-27 189.2 10.5 103 44-146 116-221 (338)
113 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.5E-22 5.4E-27 176.1 10.5 98 43-140 110-210 (211)
114 TIGR01184 ntrCD nitrate transp 99.9 2.1E-22 4.5E-27 179.6 10.1 101 44-144 97-200 (230)
115 TIGR02211 LolD_lipo_ex lipopro 99.9 2.4E-22 5.2E-27 177.2 10.4 95 44-138 124-220 (221)
116 TIGR02315 ABC_phnC phosphonate 99.9 2.7E-22 5.8E-27 179.3 10.8 102 43-144 127-231 (243)
117 COG0488 Uup ATPase components 99.9 3.8E-22 8.2E-27 197.7 13.0 93 43-138 136-229 (530)
118 TIGR03258 PhnT 2-aminoethylpho 99.9 2.4E-22 5.1E-27 191.2 11.0 102 44-145 120-225 (362)
119 cd03230 ABC_DR_subfamily_A Thi 99.9 3E-22 6.6E-27 171.0 10.6 76 62-137 96-173 (173)
120 cd03263 ABC_subfamily_A The AB 99.9 2.7E-22 6E-27 176.7 10.5 100 44-143 116-216 (220)
121 TIGR03411 urea_trans_UrtD urea 99.9 3.4E-22 7.4E-27 178.7 11.3 102 43-144 125-227 (242)
122 PRK13634 cbiO cobalt transport 99.9 3.3E-22 7.1E-27 184.5 11.4 101 44-144 127-231 (290)
123 cd03265 ABC_DrrA DrrA is the A 99.9 3E-22 6.6E-27 176.8 10.6 101 43-143 113-216 (220)
124 cd03213 ABCG_EPDR ABCG transpo 99.9 8.3E-22 1.8E-26 171.6 13.2 80 61-140 111-193 (194)
125 cd03235 ABC_Metallic_Cations A 99.9 2.9E-22 6.3E-27 175.9 10.4 96 43-139 114-211 (213)
126 TIGR01288 nodI ATP-binding ABC 99.9 3E-22 6.6E-27 185.7 11.1 101 44-144 118-220 (303)
127 cd03257 ABC_NikE_OppD_transpor 99.9 3.1E-22 6.7E-27 176.9 10.6 98 44-141 127-228 (228)
128 PRK15093 antimicrobial peptide 99.9 3.1E-22 6.8E-27 188.0 11.3 103 43-145 137-245 (330)
129 PRK13637 cbiO cobalt transport 99.9 3.9E-22 8.4E-27 183.8 11.7 102 43-144 124-230 (287)
130 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 4.4E-22 9.5E-27 165.9 10.8 104 30-136 1-144 (144)
131 cd03268 ABC_BcrA_bacitracin_re 99.9 2.6E-22 5.7E-27 175.6 9.8 99 43-141 108-208 (208)
132 cd03288 ABCC_SUR2 The SUR doma 99.9 8.2E-22 1.8E-26 178.5 13.3 84 61-144 156-239 (257)
133 PRK15079 oligopeptide ABC tran 99.9 3.4E-22 7.3E-27 188.0 11.2 102 43-144 142-247 (331)
134 cd03266 ABC_NatA_sodium_export 99.9 2.8E-22 6.1E-27 176.4 9.9 98 43-140 118-217 (218)
135 COG3842 PotA ABC-type spermidi 99.9 1.4E-22 3.1E-27 191.1 8.5 85 62-146 137-224 (352)
136 cd03218 ABC_YhbG The ABC trans 99.9 3.8E-22 8.3E-27 177.1 10.8 100 44-143 116-217 (232)
137 PRK11022 dppD dipeptide transp 99.9 3.5E-22 7.6E-27 187.5 11.1 103 43-145 132-240 (326)
138 PRK13641 cbiO cobalt transport 99.9 4.2E-22 9.1E-27 183.4 11.4 102 43-144 126-230 (287)
139 cd03217 ABC_FeS_Assembly ABC-t 99.9 8E-22 1.7E-26 172.3 12.6 84 60-143 103-189 (200)
140 PLN03232 ABC transporter C fam 99.9 4.8E-22 1E-26 217.2 13.8 139 2-142 589-822 (1495)
141 PRK11308 dppF dipeptide transp 99.9 3.8E-22 8.3E-27 187.4 11.2 103 43-145 135-241 (327)
142 TIGR03522 GldA_ABC_ATP gliding 99.9 3.8E-22 8.2E-27 185.0 10.9 103 43-145 115-218 (301)
143 PRK11264 putative amino-acid A 99.9 4.7E-22 1E-26 178.6 11.0 101 44-144 127-229 (250)
144 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.6E-22 5.6E-27 176.6 9.1 95 43-137 122-218 (218)
145 PRK13643 cbiO cobalt transport 99.9 5.3E-22 1.2E-26 182.9 11.4 102 44-145 126-230 (288)
146 PRK10851 sulfate/thiosulfate t 99.9 4.7E-22 1E-26 188.6 11.2 102 44-145 119-223 (353)
147 PRK11432 fbpC ferric transport 99.9 4.5E-22 9.7E-27 188.6 10.9 102 44-145 119-223 (351)
148 PRK11000 maltose/maltodextrin 99.9 4.6E-22 9.9E-27 189.6 11.0 103 43-145 115-220 (369)
149 cd03258 ABC_MetN_methionine_tr 99.9 5.7E-22 1.2E-26 176.3 10.9 101 43-143 122-225 (233)
150 PRK13631 cbiO cobalt transport 99.9 5.9E-22 1.3E-26 185.6 11.4 101 44-144 158-261 (320)
151 PRK11153 metN DL-methionine tr 99.9 5.1E-22 1.1E-26 187.5 11.1 101 44-144 123-226 (343)
152 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 6.7E-22 1.4E-26 176.5 11.2 100 44-143 115-216 (236)
153 PRK11629 lolD lipoprotein tran 99.9 6.5E-22 1.4E-26 176.3 11.0 101 43-143 127-229 (233)
154 cd03253 ABCC_ATM1_transporter 99.9 1.1E-21 2.4E-26 174.5 12.4 88 56-143 132-219 (236)
155 PRK14273 phosphate ABC transpo 99.9 6.6E-22 1.4E-26 178.4 11.0 100 45-144 130-234 (254)
156 PRK13650 cbiO cobalt transport 99.9 7.2E-22 1.6E-26 181.2 11.4 102 43-144 122-225 (279)
157 cd03215 ABC_Carb_Monos_II This 99.9 7.3E-22 1.6E-26 170.0 10.7 76 62-137 105-182 (182)
158 TIGR02770 nickel_nikD nickel i 99.9 6.1E-22 1.3E-26 176.2 10.6 101 44-144 105-211 (230)
159 cd03225 ABC_cobalt_CbiO_domain 99.9 4.6E-22 9.9E-27 174.2 9.6 93 44-136 117-211 (211)
160 TIGR03265 PhnT2 putative 2-ami 99.9 5.3E-22 1.1E-26 188.3 10.8 103 43-145 116-221 (353)
161 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.5E-22 1.4E-26 180.5 10.9 101 44-144 143-246 (269)
162 PRK09473 oppD oligopeptide tra 99.9 6.6E-22 1.4E-26 186.0 11.3 102 44-145 141-248 (330)
163 TIGR02673 FtsE cell division A 99.9 4.3E-22 9.4E-27 174.7 9.4 94 43-136 119-214 (214)
164 cd03269 ABC_putative_ATPase Th 99.9 5.5E-22 1.2E-26 173.8 10.0 97 44-140 111-209 (210)
165 COG1118 CysA ABC-type sulfate/ 99.9 3E-22 6.6E-27 184.1 8.7 104 43-146 119-225 (345)
166 cd03229 ABC_Class3 This class 99.9 7.6E-22 1.6E-26 169.3 10.5 75 62-136 101-178 (178)
167 PRK09493 glnQ glutamine ABC tr 99.9 7.4E-22 1.6E-26 176.5 10.8 102 43-144 118-221 (240)
168 TIGR03415 ABC_choXWV_ATP choli 99.9 6.9E-22 1.5E-26 189.2 11.2 102 43-144 146-250 (382)
169 PRK13638 cbiO cobalt transport 99.9 8.9E-22 1.9E-26 179.5 11.2 101 44-144 119-221 (271)
170 PRK14268 phosphate ABC transpo 99.9 9.5E-22 2.1E-26 178.0 11.3 101 44-144 133-238 (258)
171 cd03223 ABCD_peroxisomal_ALDP 99.9 1.2E-21 2.6E-26 166.7 11.2 77 58-136 88-164 (166)
172 PRK13646 cbiO cobalt transport 99.9 9.2E-22 2E-26 181.1 11.3 101 44-144 127-231 (286)
173 PRK11300 livG leucine/isoleuci 99.9 8.1E-22 1.8E-26 177.5 10.6 101 44-144 136-239 (255)
174 TIGR01187 potA spermidine/putr 99.9 8.8E-22 1.9E-26 184.6 11.2 102 44-145 83-187 (325)
175 PRK10619 histidine/lysine/argi 99.9 1.1E-21 2.3E-26 177.4 11.3 102 43-144 133-237 (257)
176 COG1123 ATPase components of v 99.9 5E-22 1.1E-26 195.3 9.8 102 44-145 411-516 (539)
177 TIGR01277 thiQ thiamine ABC tr 99.9 1.1E-21 2.3E-26 172.6 10.9 100 43-142 110-212 (213)
178 PRK14245 phosphate ABC transpo 99.9 1.2E-21 2.5E-26 176.4 11.4 101 44-144 125-230 (250)
179 PRK11831 putative ABC transpor 99.9 9.4E-22 2E-26 179.3 10.8 101 44-144 126-229 (269)
180 PRK14242 phosphate transporter 99.9 1.1E-21 2.5E-26 176.6 11.2 100 45-144 129-233 (253)
181 PRK10771 thiQ thiamine transpo 99.9 1.1E-21 2.4E-26 174.6 11.1 101 43-143 111-214 (232)
182 PRK10908 cell division protein 99.9 9.2E-22 2E-26 173.9 10.4 96 44-139 120-217 (222)
183 PRK09452 potA putrescine/sperm 99.9 9.1E-22 2E-26 188.1 11.1 102 44-145 127-231 (375)
184 cd03295 ABC_OpuCA_Osmoprotecti 99.9 9.4E-22 2E-26 176.2 10.4 101 43-143 115-220 (242)
185 PRK11247 ssuB aliphatic sulfon 99.9 1.1E-21 2.5E-26 178.2 10.9 101 43-143 115-218 (257)
186 cd03292 ABC_FtsE_transporter F 99.9 8E-22 1.7E-26 172.9 9.6 94 44-137 119-214 (214)
187 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.2E-21 2.6E-26 174.1 10.8 98 44-141 125-224 (224)
188 PRK10575 iron-hydroxamate tran 99.9 1.2E-21 2.6E-26 178.1 11.0 102 43-144 129-233 (265)
189 COG0444 DppD ABC-type dipeptid 99.9 7E-22 1.5E-26 182.9 9.5 105 43-147 132-242 (316)
190 PRK09536 btuD corrinoid ABC tr 99.9 1.1E-21 2.4E-26 188.9 11.3 102 43-144 121-224 (402)
191 TIGR02142 modC_ABC molybdenum 99.9 1.1E-21 2.5E-26 185.8 11.1 102 43-144 113-217 (354)
192 PRK10584 putative ABC transpor 99.9 1.3E-21 2.9E-26 173.4 10.8 97 43-139 128-226 (228)
193 PRK14247 phosphate ABC transpo 99.9 1.6E-21 3.4E-26 175.4 11.4 101 44-144 125-230 (250)
194 cd03252 ABCC_Hemolysin The ABC 99.9 1.6E-21 3.5E-26 173.8 11.3 90 55-144 132-221 (237)
195 PRK11144 modC molybdate transp 99.9 1.2E-21 2.6E-26 185.6 11.1 102 43-144 110-214 (352)
196 cd03224 ABC_TM1139_LivF_branch 99.9 1.1E-21 2.4E-26 172.8 10.1 100 44-143 114-216 (222)
197 PRK13644 cbiO cobalt transport 99.9 1.6E-21 3.5E-26 178.4 11.5 101 44-144 119-220 (274)
198 PRK11701 phnK phosphonate C-P 99.9 1.4E-21 3.1E-26 176.7 10.8 101 44-144 133-237 (258)
199 COG4598 HisP ABC-type histidin 99.9 8.8E-22 1.9E-26 169.7 8.8 103 43-145 134-238 (256)
200 PRK14267 phosphate ABC transpo 99.9 1.6E-21 3.5E-26 175.5 11.0 101 44-144 128-233 (253)
201 PRK13652 cbiO cobalt transport 99.9 1.7E-21 3.7E-26 178.5 11.3 102 43-144 119-223 (277)
202 COG0411 LivG ABC-type branched 99.9 1E-21 2.2E-26 175.6 9.4 104 43-146 131-237 (250)
203 PRK13645 cbiO cobalt transport 99.9 1.6E-21 3.5E-26 179.5 11.0 101 44-144 132-236 (289)
204 PRK11124 artP arginine transpo 99.9 1.7E-21 3.8E-26 174.3 10.9 101 44-144 124-226 (242)
205 TIGR03005 ectoine_ehuA ectoine 99.9 1.7E-21 3.8E-26 175.4 10.8 102 43-144 128-232 (252)
206 PRK13639 cbiO cobalt transport 99.9 2E-21 4.4E-26 177.7 11.4 101 44-144 120-222 (275)
207 PRK13633 cobalt transporter AT 99.9 2.1E-21 4.5E-26 178.1 11.5 102 43-144 126-229 (280)
208 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-21 2.7E-26 171.5 9.5 95 43-137 117-213 (213)
209 PRK13649 cbiO cobalt transport 99.9 2E-21 4.3E-26 177.9 11.3 101 44-144 127-230 (280)
210 PRK11231 fecE iron-dicitrate t 99.9 1.8E-21 3.9E-26 175.8 10.8 102 43-144 120-223 (255)
211 PRK13635 cbiO cobalt transport 99.9 2.1E-21 4.6E-26 178.2 11.5 102 43-144 122-225 (279)
212 TIGR02769 nickel_nikE nickel i 99.9 1.8E-21 3.9E-26 177.0 10.8 103 43-145 131-237 (265)
213 PRK14244 phosphate ABC transpo 99.9 2.1E-21 4.5E-26 174.8 11.2 100 44-143 128-232 (251)
214 PRK10253 iron-enterobactin tra 99.9 2E-21 4.3E-26 176.7 11.1 102 43-144 125-229 (265)
215 PRK14248 phosphate ABC transpo 99.9 1.8E-21 4E-26 177.0 10.9 100 45-144 144-248 (268)
216 PRK14239 phosphate transporter 99.9 2E-21 4.3E-26 174.7 10.9 100 45-144 128-232 (252)
217 PRK14250 phosphate ABC transpo 99.9 2.1E-21 4.6E-26 174.1 11.1 102 43-144 112-217 (241)
218 PRK09984 phosphonate/organopho 99.9 1.8E-21 4E-26 176.3 10.7 102 43-144 134-238 (262)
219 TIGR03771 anch_rpt_ABC anchore 99.9 2.2E-21 4.7E-26 172.2 10.8 101 43-144 95-197 (223)
220 TIGR03873 F420-0_ABC_ATP propo 99.9 2.1E-21 4.5E-26 175.5 10.9 102 43-144 119-222 (256)
221 PRK14269 phosphate ABC transpo 99.9 2.5E-21 5.5E-26 173.9 11.4 101 44-144 121-226 (246)
222 PRK14251 phosphate ABC transpo 99.9 2.1E-21 4.6E-26 174.6 10.9 101 44-144 126-231 (251)
223 COG4161 ArtP ABC-type arginine 99.9 1.4E-21 2.9E-26 166.2 8.9 101 43-143 123-225 (242)
224 PRK10744 pstB phosphate transp 99.9 2.2E-21 4.7E-26 175.8 10.9 101 44-144 135-240 (260)
225 TIGR03410 urea_trans_UrtE urea 99.9 1.9E-21 4.1E-26 172.6 10.1 101 44-144 113-217 (230)
226 PRK10070 glycine betaine trans 99.9 2.3E-21 4.9E-26 186.7 11.3 101 44-144 147-250 (400)
227 PRK15112 antimicrobial peptide 99.9 2.1E-21 4.6E-26 176.8 10.5 101 44-144 131-235 (267)
228 TIGR03740 galliderm_ABC gallid 99.9 2.1E-21 4.6E-26 171.7 10.2 101 43-143 106-208 (223)
229 cd03267 ABC_NatA_like Similar 99.9 2.4E-21 5.1E-26 173.4 10.5 98 44-141 136-236 (236)
230 COG3840 ThiQ ABC-type thiamine 99.9 1.4E-21 3E-26 168.6 8.6 101 44-144 112-215 (231)
231 cd03251 ABCC_MsbA MsbA is an e 99.9 3.1E-21 6.8E-26 171.4 11.2 94 50-143 127-220 (234)
232 PRK10895 lipopolysaccharide AB 99.9 2.4E-21 5.3E-26 173.2 10.5 102 43-144 119-222 (241)
233 TIGR02323 CP_lyasePhnK phospho 99.9 2.6E-21 5.7E-26 174.2 10.8 101 43-143 129-233 (253)
234 PLN03130 ABC transporter C fam 99.9 3.8E-21 8.2E-26 211.1 14.2 139 2-142 589-822 (1622)
235 PRK11248 tauB taurine transpor 99.9 2.5E-21 5.5E-26 175.4 10.7 101 43-143 110-215 (255)
236 PRK10418 nikD nickel transport 99.9 2.9E-21 6.2E-26 174.5 11.0 102 43-144 119-226 (254)
237 cd03245 ABCC_bacteriocin_expor 99.9 2.7E-21 5.9E-26 170.3 10.5 83 58-140 137-219 (220)
238 TIGR01978 sufC FeS assembly AT 99.9 3.3E-21 7.2E-26 172.0 11.2 102 43-144 124-230 (243)
239 COG4608 AppF ABC-type oligopep 99.9 1.9E-21 4E-26 176.6 9.6 122 25-146 65-197 (268)
240 PRK13642 cbiO cobalt transport 99.9 3.3E-21 7.2E-26 176.5 11.4 101 44-144 123-225 (277)
241 cd03233 ABC_PDR_domain1 The pl 99.9 5E-21 1.1E-25 167.6 11.8 86 55-140 112-201 (202)
242 PRK13648 cbiO cobalt transport 99.9 4.2E-21 9.2E-26 174.9 11.8 101 44-144 125-227 (269)
243 PRK11607 potG putrescine trans 99.9 2.9E-21 6.2E-26 184.7 11.1 102 44-145 132-236 (377)
244 PRK13549 xylose transporter AT 99.8 2.8E-21 6.1E-26 190.6 11.1 102 43-144 386-490 (506)
245 PRK14256 phosphate ABC transpo 99.8 3.9E-21 8.5E-26 173.1 11.0 101 44-144 127-232 (252)
246 PRK14274 phosphate ABC transpo 99.8 4.2E-21 9.1E-26 173.7 11.2 100 45-144 135-239 (259)
247 PRK13548 hmuV hemin importer A 99.8 4.6E-21 9.9E-26 173.8 11.4 101 43-143 116-225 (258)
248 cd03270 ABC_UvrA_I The excisio 99.8 4.7E-21 1E-25 170.8 11.3 98 44-141 119-226 (226)
249 PRK14270 phosphate ABC transpo 99.8 4.2E-21 9.2E-26 172.8 11.0 101 44-144 126-231 (251)
250 PRK13640 cbiO cobalt transport 99.8 4.6E-21 9.9E-26 176.1 11.4 101 44-144 126-228 (282)
251 PRK14240 phosphate transporter 99.8 4.7E-21 1E-25 172.3 11.2 100 45-144 126-230 (250)
252 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.6E-20 3.5E-25 173.1 15.0 83 62-144 160-243 (282)
253 PRK14235 phosphate transporter 99.8 4.7E-21 1E-25 174.6 11.3 101 44-144 142-247 (267)
254 PRK14241 phosphate transporter 99.8 4.4E-21 9.4E-26 173.5 11.0 100 45-144 128-238 (258)
255 cd03299 ABC_ModC_like Archeal 99.8 4.4E-21 9.5E-26 171.4 10.8 100 44-143 112-214 (235)
256 PRK03695 vitamin B12-transport 99.8 5E-21 1.1E-25 172.6 11.2 102 43-144 108-218 (248)
257 PRK14255 phosphate ABC transpo 99.8 4.9E-21 1.1E-25 172.3 11.0 90 55-144 142-232 (252)
258 PRK13632 cbiO cobalt transport 99.8 4.9E-21 1.1E-25 174.8 11.1 100 44-143 125-226 (271)
259 PRK14253 phosphate ABC transpo 99.8 5.5E-21 1.2E-25 171.7 11.2 99 45-143 125-228 (249)
260 cd03300 ABC_PotA_N PotA is an 99.8 5.3E-21 1.1E-25 170.4 10.9 100 44-143 113-215 (232)
261 PRK09700 D-allose transporter 99.8 4.5E-21 9.7E-26 189.2 11.4 101 43-143 390-493 (510)
262 PRK14275 phosphate ABC transpo 99.8 6E-21 1.3E-25 175.8 11.1 100 45-144 162-266 (286)
263 cd03234 ABCG_White The White s 99.8 6.2E-21 1.4E-25 169.2 10.8 97 45-141 127-226 (226)
264 PRK14272 phosphate ABC transpo 99.8 7.6E-21 1.7E-25 170.9 11.4 90 55-144 142-232 (252)
265 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 8.3E-21 1.8E-25 169.3 11.5 90 54-143 132-221 (238)
266 PRK00349 uvrA excinuclease ABC 99.8 5.1E-21 1.1E-25 200.0 11.7 97 45-141 472-578 (943)
267 cd03248 ABCC_TAP TAP, the Tran 99.8 5E-21 1.1E-25 169.5 10.0 93 45-137 132-226 (226)
268 PRK14262 phosphate ABC transpo 99.8 7.2E-21 1.6E-25 171.1 11.1 100 45-144 126-230 (250)
269 COG0410 LivF ABC-type branched 99.8 9.2E-21 2E-25 168.3 11.6 84 62-145 137-223 (237)
270 PTZ00265 multidrug resistance 99.8 1E-20 2.2E-25 206.2 14.4 74 62-135 580-655 (1466)
271 PRK10261 glutathione transport 99.8 5E-21 1.1E-25 193.5 11.2 102 44-145 445-550 (623)
272 PRK14243 phosphate transporter 99.8 7.8E-21 1.7E-25 172.8 11.1 100 45-144 131-244 (264)
273 PRK15439 autoinducer 2 ABC tra 99.8 5.2E-21 1.1E-25 189.0 10.8 101 44-144 385-488 (510)
274 PRK11288 araG L-arabinose tran 99.8 6.5E-21 1.4E-25 187.8 11.4 102 43-144 377-481 (501)
275 PRK15056 manganese/iron transp 99.8 8E-21 1.7E-25 173.4 11.1 102 43-145 124-227 (272)
276 PRK15134 microcin C ABC transp 99.8 5.4E-21 1.2E-25 189.5 10.7 101 44-144 407-511 (529)
277 PRK14236 phosphate transporter 99.8 9E-21 1.9E-25 173.1 11.2 100 45-144 148-252 (272)
278 PRK14249 phosphate ABC transpo 99.8 9.6E-21 2.1E-25 170.5 11.3 90 55-144 141-231 (251)
279 PRK13547 hmuV hemin importer A 99.8 9.3E-21 2E-25 173.6 11.1 102 43-144 127-240 (272)
280 PRK14237 phosphate transporter 99.8 1.1E-20 2.4E-25 172.1 11.5 100 45-144 143-247 (267)
281 CHL00131 ycf16 sulfate ABC tra 99.8 1.2E-20 2.5E-25 169.7 11.4 101 44-144 132-237 (252)
282 PRK10762 D-ribose transporter 99.8 7.7E-21 1.7E-25 187.3 11.1 102 43-144 376-480 (501)
283 PRK14260 phosphate ABC transpo 99.8 1.1E-20 2.3E-25 171.2 11.2 102 44-145 129-240 (259)
284 TIGR02633 xylG D-xylose ABC tr 99.8 8.1E-21 1.8E-25 186.8 11.2 100 43-142 384-486 (500)
285 PRK14261 phosphate ABC transpo 99.8 1E-20 2.2E-25 170.6 10.9 100 45-144 129-233 (253)
286 PRK14238 phosphate transporter 99.8 9.7E-21 2.1E-25 172.9 10.9 91 54-144 160-251 (271)
287 PRK14265 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 172.9 11.2 101 45-145 141-255 (274)
288 PRK10419 nikE nickel transport 99.8 1.1E-20 2.3E-25 172.4 10.9 103 43-145 132-238 (268)
289 TIGR00968 3a0106s01 sulfate AB 99.8 1.1E-20 2.5E-25 168.9 10.8 102 43-144 112-216 (237)
290 COG4559 ABC-type hemin transpo 99.8 1.7E-20 3.6E-25 165.2 11.5 97 62-167 136-240 (259)
291 PRK09580 sufC cysteine desulfu 99.8 1.5E-20 3.3E-25 168.5 11.5 101 44-144 126-231 (248)
292 cd03250 ABCC_MRP_domain1 Domai 99.8 1.5E-20 3.2E-25 164.2 11.1 81 56-136 122-204 (204)
293 PRK14271 phosphate ABC transpo 99.8 1.4E-20 3E-25 172.6 11.4 100 45-144 143-247 (276)
294 PRK14259 phosphate ABC transpo 99.8 1.4E-20 3E-25 171.8 11.1 99 45-143 134-248 (269)
295 TIGR00630 uvra excinuclease AB 99.8 1.3E-20 2.8E-25 196.7 12.4 98 45-142 470-577 (924)
296 PRK14254 phosphate ABC transpo 99.8 1.4E-20 3E-25 173.4 11.1 100 44-143 159-264 (285)
297 PRK14266 phosphate ABC transpo 99.8 1.6E-20 3.6E-25 168.7 11.1 100 45-144 126-230 (250)
298 COG4172 ABC-type uncharacteriz 99.8 6.1E-21 1.3E-25 180.8 8.1 105 43-147 407-515 (534)
299 TIGR03269 met_CoM_red_A2 methy 99.8 1.4E-20 3E-25 186.2 11.0 100 44-143 405-512 (520)
300 cd03238 ABC_UvrA The excision 99.8 2.7E-20 6E-25 160.7 11.5 98 42-139 67-168 (176)
301 TIGR00957 MRP_assoc_pro multi 99.8 2.4E-20 5.2E-25 204.2 13.7 141 2-142 608-844 (1522)
302 PRK10982 galactose/methyl gala 99.8 1.6E-20 3.4E-25 184.5 10.9 100 43-142 372-474 (491)
303 PRK14258 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 169.3 11.2 101 45-145 130-242 (261)
304 PRK14263 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 169.3 11.4 101 44-144 128-241 (261)
305 PRK14252 phosphate ABC transpo 99.8 2.4E-20 5.3E-25 169.4 11.1 100 45-144 141-245 (265)
306 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.7E-20 3.7E-25 169.5 9.7 94 43-136 97-193 (246)
307 PRK09544 znuC high-affinity zi 99.8 2.4E-20 5.1E-25 168.9 10.2 101 43-144 102-205 (251)
308 COG4618 ArpD ABC-type protease 99.8 3.1E-20 6.8E-25 179.8 11.3 143 2-147 310-559 (580)
309 TIGR00954 3a01203 Peroxysomal 99.8 2.8E-20 6.1E-25 189.2 11.4 70 62-133 583-652 (659)
310 PRK14246 phosphate ABC transpo 99.8 4.4E-20 9.5E-25 167.5 11.3 101 44-144 132-237 (257)
311 TIGR02982 heterocyst_DevA ABC 99.8 3.2E-20 7E-25 164.0 10.1 95 43-137 123-219 (220)
312 PRK10247 putative ABC transpor 99.8 2.3E-20 5E-25 165.7 9.2 101 43-143 118-222 (225)
313 PRK13546 teichoic acids export 99.8 4.5E-20 9.7E-25 168.5 11.2 100 45-144 127-228 (264)
314 cd00267 ABC_ATPase ABC (ATP-bi 99.8 4.9E-20 1.1E-24 154.6 10.5 75 62-136 81-157 (157)
315 cd03222 ABC_RNaseL_inhibitor T 99.8 5.5E-20 1.2E-24 158.9 10.2 77 62-138 72-151 (177)
316 COG4152 ABC-type uncharacteriz 99.8 1.6E-20 3.5E-25 168.2 7.0 100 46-145 115-216 (300)
317 cd03271 ABC_UvrA_II The excisi 99.8 7.2E-20 1.6E-24 167.2 11.4 99 44-142 151-260 (261)
318 PRK14264 phosphate ABC transpo 99.8 6.4E-20 1.4E-24 170.5 11.0 101 44-144 179-285 (305)
319 PRK13545 tagH teichoic acids e 99.8 6.5E-20 1.4E-24 180.9 11.2 99 44-142 126-226 (549)
320 PRK15177 Vi polysaccharide exp 99.8 6.6E-20 1.4E-24 162.0 10.0 98 47-144 90-188 (213)
321 TIGR03608 L_ocin_972_ABC putat 99.8 6.9E-20 1.5E-24 159.7 9.5 90 43-132 116-206 (206)
322 KOG0927|consensus 99.8 1.9E-19 4.2E-24 175.3 13.4 76 62-138 222-298 (614)
323 PRK10938 putative molybdenum t 99.8 6.3E-20 1.4E-24 180.1 10.2 98 43-140 382-484 (490)
324 COG4148 ModC ABC-type molybdat 99.8 2.8E-20 6E-25 169.5 6.5 102 43-144 110-214 (352)
325 PRK00635 excinuclease ABC subu 99.8 2.8E-19 6E-24 195.0 15.0 98 45-142 459-566 (1809)
326 COG1119 ModF ABC-type molybden 99.8 4.2E-19 9.1E-24 159.1 13.0 81 62-142 172-256 (257)
327 COG4525 TauB ABC-type taurine 99.8 1.7E-19 3.7E-24 157.2 9.9 95 49-143 120-219 (259)
328 PLN03073 ABC transporter F fam 99.8 2.2E-19 4.7E-24 184.2 12.4 113 28-142 507-708 (718)
329 PRK13543 cytochrome c biogenes 99.8 1.9E-19 4.2E-24 158.6 9.9 92 43-134 119-212 (214)
330 PRK13409 putative ATPase RIL; 99.8 1.5E-19 3.3E-24 181.8 10.1 99 43-142 435-536 (590)
331 PRK15064 ABC transporter ATP-b 99.8 1.8E-19 3.9E-24 178.7 10.5 99 43-143 419-520 (530)
332 PRK00635 excinuclease ABC subu 99.8 2.6E-19 5.5E-24 195.3 12.4 98 45-142 792-900 (1809)
333 cd03236 ABC_RNaseL_inhibitor_d 99.8 2.2E-19 4.8E-24 163.2 9.2 96 43-139 121-218 (255)
334 PRK13538 cytochrome c biogenes 99.8 3.5E-19 7.5E-24 155.8 9.4 90 43-132 111-202 (204)
335 COG4604 CeuD ABC-type enteroch 99.8 1.9E-19 4.2E-24 157.0 7.5 126 45-182 119-247 (252)
336 cd03231 ABC_CcmA_heme_exporter 99.8 4.7E-19 1E-23 154.8 9.7 90 43-132 107-198 (201)
337 PRK10636 putative ABC transpor 99.8 3.5E-19 7.6E-24 180.6 10.3 99 43-143 411-512 (638)
338 COG4181 Predicted ABC-type tra 99.8 3.2E-19 6.8E-24 152.8 8.2 98 43-140 128-227 (228)
339 TIGR01257 rim_protein retinal- 99.8 4.2E-19 9.2E-24 196.4 11.5 99 44-142 1044-1143(2272)
340 TIGR02324 CP_lyasePhnL phospho 99.8 4E-19 8.7E-24 157.1 9.2 89 44-132 131-222 (224)
341 TIGR01271 CFTR_protein cystic 99.8 1E-18 2.2E-23 191.1 13.9 81 62-142 549-630 (1490)
342 cd03290 ABCC_SUR1_N The SUR do 99.8 8E-19 1.7E-23 154.7 9.9 81 56-136 135-218 (218)
343 TIGR01257 rim_protein retinal- 99.8 8.6E-19 1.9E-23 194.0 11.1 102 44-145 2053-2156(2272)
344 TIGR01166 cbiO cobalt transpor 99.8 7.4E-19 1.6E-23 151.8 8.5 80 44-123 110-190 (190)
345 PLN03211 ABC transporter G-25; 99.8 1.4E-18 3E-23 176.9 11.0 101 44-144 184-292 (659)
346 PRK13539 cytochrome c biogenes 99.8 1.5E-18 3.3E-23 152.2 9.5 90 43-133 109-199 (207)
347 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.2E-18 4.8E-23 171.9 10.4 95 43-139 424-521 (552)
348 PRK10535 macrolide transporter 99.8 3.6E-18 7.7E-23 173.6 11.5 102 43-144 126-228 (648)
349 TIGR00955 3a01204 The Eye Pigm 99.8 3.1E-18 6.7E-23 173.1 10.5 102 43-144 142-252 (617)
350 PRK11819 putative ABC transpor 99.7 3.4E-18 7.3E-23 170.8 10.3 95 43-139 426-523 (556)
351 COG4674 Uncharacterized ABC-ty 99.7 1.7E-18 3.8E-23 150.9 7.1 103 43-145 129-232 (249)
352 TIGR01189 ccmA heme ABC export 99.7 5.7E-18 1.2E-22 147.3 9.3 88 43-131 109-197 (198)
353 PRK11147 ABC transporter ATPas 99.7 4.6E-18 1E-22 172.3 10.0 95 43-139 421-518 (635)
354 COG1245 Predicted ATPase, RNas 99.7 8.3E-18 1.8E-22 161.5 10.8 91 43-133 195-287 (591)
355 PRK13541 cytochrome c biogenes 99.7 6E-18 1.3E-22 147.0 8.9 88 43-130 105-193 (195)
356 COG1129 MglA ABC-type sugar tr 99.7 8.1E-18 1.8E-22 164.6 9.8 97 44-140 383-482 (500)
357 PRK13540 cytochrome c biogenes 99.7 7.8E-18 1.7E-22 146.8 8.5 88 43-130 109-197 (200)
358 COG4586 ABC-type uncharacteriz 99.7 1.1E-17 2.4E-22 152.0 9.6 84 62-145 157-243 (325)
359 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.2E-17 4.8E-22 145.7 9.7 91 47-137 109-211 (213)
360 TIGR00956 3a01205 Pleiotropic 99.7 3.2E-17 7E-22 178.4 11.7 101 43-143 879-988 (1394)
361 PLN03140 ABC transporter G fam 99.7 4.5E-17 9.7E-22 177.6 11.8 100 44-143 997-1105(1470)
362 COG4107 PhnK ABC-type phosphon 99.7 3E-17 6.5E-22 141.2 8.0 82 62-143 152-236 (258)
363 cd03278 ABC_SMC_barmotin Barmo 99.7 7.1E-17 1.5E-21 141.4 9.9 89 43-134 98-190 (197)
364 TIGR00956 3a01205 Pleiotropic 99.7 5.9E-17 1.3E-21 176.4 10.5 99 44-142 187-294 (1394)
365 cd03276 ABC_SMC6_euk Eukaryoti 99.7 8.8E-17 1.9E-21 140.9 9.6 90 44-136 95-192 (198)
366 PRK00349 uvrA excinuclease ABC 99.7 1.2E-16 2.5E-21 167.5 11.6 102 44-145 812-924 (943)
367 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.3E-16 2.8E-21 144.1 10.2 90 43-133 128-242 (251)
368 PTZ00243 ABC transporter; Prov 99.7 1.1E-16 2.5E-21 175.6 11.1 93 50-142 771-864 (1560)
369 TIGR00630 uvra excinuclease AB 99.7 2.4E-16 5.2E-21 164.9 11.5 101 44-144 810-921 (924)
370 cd03274 ABC_SMC4_euk Eukaryoti 99.6 3.9E-16 8.4E-21 138.3 8.9 90 44-134 110-204 (212)
371 cd03275 ABC_SMC1_euk Eukaryoti 99.6 5.9E-16 1.3E-20 139.6 10.0 76 58-133 152-232 (247)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.6 6.6E-16 1.4E-20 138.0 9.9 77 56-133 153-234 (243)
373 COG1101 PhnK ABC-type uncharac 99.6 4.4E-16 9.6E-21 137.6 8.2 97 44-140 129-230 (263)
374 PLN03140 ABC transporter G fam 99.6 2.9E-16 6.3E-21 171.3 7.9 99 44-142 314-421 (1470)
375 cd03240 ABC_Rad50 The catalyti 99.6 7.3E-16 1.6E-20 135.6 8.8 79 56-134 110-197 (204)
376 COG0396 sufC Cysteine desulfur 99.6 3E-15 6.5E-20 133.3 12.6 82 62-143 145-229 (251)
377 COG0488 Uup ATPase components 99.6 9.5E-16 2.1E-20 152.3 10.4 110 27-139 319-515 (530)
378 KOG0062|consensus 99.6 8.3E-17 1.8E-21 156.3 2.4 91 45-137 181-273 (582)
379 COG4619 ABC-type uncharacteriz 99.6 6.5E-16 1.4E-20 132.2 7.2 109 31-139 93-214 (223)
380 COG4778 PhnL ABC-type phosphon 99.6 4.4E-16 9.5E-21 133.5 4.5 71 62-133 153-226 (235)
381 KOG0059|consensus 99.6 1.9E-15 4.1E-20 158.5 8.1 102 43-144 680-783 (885)
382 COG1134 TagH ABC-type polysacc 99.6 2E-14 4.4E-19 129.0 11.1 84 62-145 148-233 (249)
383 KOG0062|consensus 99.6 1.3E-14 2.8E-19 141.1 10.4 76 62-139 483-559 (582)
384 cd03277 ABC_SMC5_euk Eukaryoti 99.6 9.4E-15 2E-19 129.6 8.6 82 56-137 121-212 (213)
385 COG4167 SapF ABC-type antimicr 99.6 8.7E-15 1.9E-19 127.0 7.6 85 62-146 150-237 (267)
386 cd03239 ABC_SMC_head The struc 99.5 2.4E-14 5.1E-19 123.7 9.9 75 60-134 93-172 (178)
387 KOG0061|consensus 99.5 8.2E-15 1.8E-19 148.2 7.9 102 43-144 147-256 (613)
388 KOG0927|consensus 99.5 1.6E-14 3.5E-19 141.2 5.9 109 29-139 389-586 (614)
389 cd03241 ABC_RecN RecN ATPase i 99.5 4.9E-14 1.1E-18 129.2 8.4 77 61-137 170-250 (276)
390 COG0178 UvrA Excinuclease ATPa 99.5 8.2E-14 1.8E-18 141.4 10.0 98 46-143 465-572 (935)
391 TIGR00634 recN DNA repair prot 99.5 1.3E-13 2.8E-18 138.3 10.7 105 60-168 439-548 (563)
392 COG0178 UvrA Excinuclease ATPa 99.5 1.8E-13 3.9E-18 139.0 10.0 103 45-147 805-918 (935)
393 COG1245 Predicted ATPase, RNas 99.5 1.3E-13 2.9E-18 132.8 8.2 91 43-133 437-530 (591)
394 KOG0066|consensus 99.5 2.5E-13 5.3E-18 130.6 9.7 106 29-137 586-779 (807)
395 PRK10869 recombination and rep 99.5 3.4E-13 7.4E-18 135.0 11.2 111 54-168 419-538 (553)
396 COG4178 ABC-type uncharacteriz 99.4 3.7E-13 8.1E-18 134.4 10.5 103 27-129 390-583 (604)
397 COG4136 ABC-type uncharacteriz 99.4 2.5E-13 5.5E-18 114.6 7.6 90 43-132 116-207 (213)
398 KOG0066|consensus 99.4 4.6E-14 1E-18 135.5 2.6 95 42-138 392-488 (807)
399 COG4133 CcmA ABC-type transpor 99.4 3.7E-13 8E-18 116.8 7.9 93 31-123 92-193 (209)
400 cd03227 ABC_Class2 ABC-type Cl 99.4 3.9E-13 8.4E-18 113.9 7.9 74 61-134 77-155 (162)
401 PHA02562 46 endonuclease subun 99.4 2.5E-13 5.4E-18 135.1 7.7 90 44-137 454-555 (562)
402 COG3845 ABC-type uncharacteriz 99.4 2.8E-13 6E-18 131.5 7.4 102 43-144 384-488 (501)
403 cd03280 ABC_MutS2 MutS2 homolo 99.4 4.2E-13 9.1E-18 117.3 6.0 94 46-141 76-172 (200)
404 COG4138 BtuD ABC-type cobalami 99.4 1.5E-13 3.3E-18 118.5 1.8 103 44-146 108-219 (248)
405 TIGR00618 sbcc exonuclease Sbc 99.4 1.5E-12 3.2E-17 138.9 9.7 82 54-135 943-1036(1042)
406 TIGR02673 FtsE cell division A 99.3 6.9E-12 1.5E-16 110.0 10.8 87 149-235 33-128 (214)
407 cd03242 ABC_RecF RecF is a rec 99.3 1.9E-12 4.2E-17 118.4 7.2 86 49-137 171-269 (270)
408 PRK13634 cbiO cobalt transport 99.3 9.7E-12 2.1E-16 114.8 11.8 86 150-235 39-135 (290)
409 cd03261 ABC_Org_Solvent_Resist 99.3 8.9E-12 1.9E-16 111.0 11.2 87 149-235 31-127 (235)
410 PRK13632 cbiO cobalt transport 99.3 8.5E-12 1.8E-16 113.9 11.1 86 150-235 41-133 (271)
411 PRK13650 cbiO cobalt transport 99.3 8E-12 1.7E-16 114.7 10.8 86 150-235 39-131 (279)
412 PRK10908 cell division protein 99.3 9.1E-12 2E-16 110.0 10.6 87 149-235 33-128 (222)
413 TIGR02314 ABC_MetN D-methionin 99.3 1.1E-11 2.4E-16 117.4 11.7 86 150-235 37-131 (343)
414 TIGR00960 3a0501s02 Type II (G 99.3 1.2E-11 2.5E-16 108.8 10.9 87 149-235 34-129 (216)
415 PRK13652 cbiO cobalt transport 99.3 1.2E-11 2.7E-16 113.3 11.3 86 150-235 36-128 (277)
416 PRK13635 cbiO cobalt transport 99.3 1.3E-11 2.7E-16 113.5 11.2 86 150-235 39-131 (279)
417 cd03266 ABC_NatA_sodium_export 99.3 1.8E-11 3.9E-16 107.6 11.5 86 149-235 36-127 (218)
418 PRK13646 cbiO cobalt transport 99.3 1.6E-11 3.4E-16 113.1 11.5 86 150-235 39-135 (286)
419 PRK13644 cbiO cobalt transport 99.3 1.4E-11 3.1E-16 112.8 11.1 86 150-235 34-127 (274)
420 PRK13643 cbiO cobalt transport 99.3 1.4E-11 3.1E-16 113.6 11.0 86 150-235 38-134 (288)
421 cd03295 ABC_OpuCA_Osmoprotecti 99.3 1.7E-11 3.7E-16 109.7 11.2 88 149-236 32-125 (242)
422 PRK13637 cbiO cobalt transport 99.3 1.7E-11 3.7E-16 113.1 11.2 86 150-235 39-133 (287)
423 cd03262 ABC_HisP_GlnQ_permease 99.3 1.9E-11 4.2E-16 106.9 11.0 87 149-235 31-126 (213)
424 PRK13631 cbiO cobalt transport 99.3 2.3E-11 4.9E-16 114.2 12.0 86 150-235 58-166 (320)
425 COG4170 SapD ABC-type antimicr 99.3 9.9E-13 2.1E-17 116.5 2.7 102 43-144 137-244 (330)
426 PRK10247 putative ABC transpor 99.3 1.3E-11 2.7E-16 109.7 9.7 86 150-235 39-127 (225)
427 PRK14250 phosphate ABC transpo 99.3 1.7E-11 3.7E-16 109.9 10.4 87 149-235 34-121 (241)
428 cd03258 ABC_MetN_methionine_tr 99.3 2.3E-11 5E-16 108.1 11.1 87 149-235 36-131 (233)
429 PRK11629 lolD lipoprotein tran 99.3 3.3E-11 7.1E-16 107.3 11.9 86 150-235 41-136 (233)
430 cd03260 ABC_PstB_phosphate_tra 99.3 1.9E-11 4E-16 108.3 10.2 87 149-235 31-130 (227)
431 PRK11153 metN DL-methionine tr 99.3 2.6E-11 5.7E-16 114.7 11.7 86 150-235 37-131 (343)
432 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 2.3E-11 5.1E-16 106.9 10.5 87 149-235 35-131 (218)
433 COG1126 GlnQ ABC-type polar am 99.3 1.8E-11 3.8E-16 108.6 9.5 87 149-235 33-127 (240)
434 cd03292 ABC_FtsE_transporter F 99.3 3.4E-11 7.3E-16 105.5 11.3 87 149-235 32-127 (214)
435 cd03263 ABC_subfamily_A The AB 99.3 1.7E-11 3.8E-16 107.9 9.5 86 149-235 33-124 (220)
436 cd03259 ABC_Carb_Solutes_like 99.3 3.2E-11 7E-16 105.8 10.9 85 149-235 31-121 (213)
437 TIGR02315 ABC_phnC phosphonate 99.3 2.6E-11 5.7E-16 108.3 10.6 87 149-235 33-136 (243)
438 PRK03918 chromosome segregatio 99.3 1E-11 2.2E-16 129.8 9.0 78 57-134 784-868 (880)
439 cd03256 ABC_PhnC_transporter A 99.3 2.2E-11 4.8E-16 108.5 9.9 87 149-235 32-135 (241)
440 COG1120 FepC ABC-type cobalami 99.3 8.5E-12 1.9E-16 113.6 7.1 87 149-235 33-129 (258)
441 TIGR00972 3a0107s01c2 phosphat 99.3 4.3E-11 9.2E-16 107.5 11.5 87 149-235 32-131 (247)
442 cd03219 ABC_Mj1267_LivG_branch 99.3 3.9E-11 8.4E-16 106.7 11.0 87 149-235 31-134 (236)
443 PRK13633 cobalt transporter AT 99.3 4E-11 8.6E-16 110.1 11.1 86 150-235 42-135 (280)
444 PRK10584 putative ABC transpor 99.3 5.6E-11 1.2E-15 105.3 11.7 86 150-235 42-137 (228)
445 PRK14248 phosphate ABC transpo 99.3 6E-11 1.3E-15 108.0 12.1 137 5-235 2-151 (268)
446 PRK13639 cbiO cobalt transport 99.3 3.8E-11 8.1E-16 110.0 10.8 87 149-235 33-128 (275)
447 PRK09536 btuD corrinoid ABC tr 99.3 2.7E-11 5.9E-16 117.1 10.3 86 150-235 35-130 (402)
448 PRK09493 glnQ glutamine ABC tr 99.3 4.9E-11 1.1E-15 106.6 11.2 87 149-235 32-127 (240)
449 cd03296 ABC_CysA_sulfate_impor 99.3 3.2E-11 7E-16 107.8 10.1 85 149-235 33-127 (239)
450 PRK13648 cbiO cobalt transport 99.3 4.2E-11 9.2E-16 109.1 11.0 86 150-235 41-133 (269)
451 PRK10895 lipopolysaccharide AB 99.2 4.2E-11 9.1E-16 107.1 10.7 87 149-235 34-128 (241)
452 TIGR02211 LolD_lipo_ex lipopro 99.2 3.4E-11 7.5E-16 106.0 10.0 87 149-235 36-132 (221)
453 PRK13640 cbiO cobalt transport 99.2 4.6E-11 9.9E-16 109.9 11.1 86 150-235 39-134 (282)
454 TIGR02769 nickel_nikE nickel i 99.2 6.8E-11 1.5E-15 107.6 12.0 86 150-235 43-140 (265)
455 PRK13642 cbiO cobalt transport 99.2 4.5E-11 9.7E-16 109.6 10.8 86 150-235 39-131 (277)
456 TIGR03265 PhnT2 putative 2-ami 99.2 5.2E-11 1.1E-15 113.2 11.6 85 149-235 35-125 (353)
457 PRK13641 cbiO cobalt transport 99.2 5.4E-11 1.2E-15 109.6 11.3 86 150-235 39-135 (287)
458 cd03265 ABC_DrrA DrrA is the A 99.2 6.4E-11 1.4E-15 104.5 11.3 86 149-235 31-122 (220)
459 TIGR01288 nodI ATP-binding ABC 99.2 6.2E-11 1.4E-15 110.0 11.6 85 150-235 36-126 (303)
460 PRK11831 putative ABC transpor 99.2 5.7E-11 1.2E-15 108.4 11.1 86 150-235 39-134 (269)
461 PRK10619 histidine/lysine/argi 99.2 7.2E-11 1.6E-15 106.7 11.6 87 150-236 37-143 (257)
462 PRK11264 putative amino-acid A 99.2 7.6E-11 1.7E-15 105.8 11.7 87 149-235 34-135 (250)
463 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 4.7E-11 1E-15 106.5 10.3 87 149-236 32-124 (236)
464 TIGR02168 SMC_prok_B chromosom 99.2 1.3E-11 2.7E-16 131.2 7.5 78 56-133 1084-1165(1179)
465 PRK15112 antimicrobial peptide 99.2 7.8E-11 1.7E-15 107.4 11.8 86 150-235 45-139 (267)
466 PRK14269 phosphate ABC transpo 99.2 4.5E-11 9.8E-16 107.4 10.0 87 149-235 33-129 (246)
467 cd03245 ABCC_bacteriocin_expor 99.2 4.9E-11 1.1E-15 105.0 10.0 86 149-235 35-120 (220)
468 cd03301 ABC_MalK_N The N-termi 99.2 6.3E-11 1.4E-15 103.8 10.6 85 149-235 31-121 (213)
469 PRK13548 hmuV hemin importer A 99.2 6.5E-11 1.4E-15 107.4 10.9 87 149-235 33-125 (258)
470 PRK10253 iron-enterobactin tra 99.2 5.4E-11 1.2E-15 108.2 10.4 86 150-235 39-134 (265)
471 COG4615 PvdE ABC-type sideroph 99.2 1.9E-11 4.1E-16 116.5 7.5 79 62-140 449-529 (546)
472 PRK01156 chromosome segregatio 99.2 2.9E-11 6.2E-16 127.1 9.7 76 58-133 798-883 (895)
473 cd03218 ABC_YhbG The ABC trans 99.2 7.7E-11 1.7E-15 104.6 11.1 87 149-235 31-124 (232)
474 PRK13638 cbiO cobalt transport 99.2 7E-11 1.5E-15 107.8 11.0 86 150-235 33-127 (271)
475 PRK13540 cytochrome c biogenes 99.2 3.5E-11 7.6E-16 104.9 8.6 86 149-235 32-118 (200)
476 PRK13649 cbiO cobalt transport 99.2 7.1E-11 1.5E-15 108.1 11.0 87 149-235 38-135 (280)
477 cd03252 ABCC_Hemolysin The ABC 99.2 2E-11 4.4E-16 108.7 7.2 62 149-210 33-94 (237)
478 cd03257 ABC_NikE_OppD_transpor 99.2 1E-10 2.2E-15 103.3 11.6 87 149-235 36-135 (228)
479 cd03248 ABCC_TAP TAP, the Tran 99.2 3.2E-11 6.8E-16 106.8 8.3 61 150-210 46-106 (226)
480 COG3839 MalK ABC-type sugar tr 99.2 7E-11 1.5E-15 111.5 10.9 85 149-235 34-124 (338)
481 PRK14256 phosphate ABC transpo 99.2 1.2E-10 2.5E-15 105.0 11.8 86 150-235 36-135 (252)
482 TIGR03522 GldA_ABC_ATP gliding 99.2 6.5E-11 1.4E-15 109.9 10.4 87 149-236 33-125 (301)
483 TIGR02982 heterocyst_DevA ABC 99.2 1.1E-10 2.3E-15 103.2 11.2 87 149-235 36-132 (220)
484 PRK14235 phosphate transporter 99.2 6.9E-11 1.5E-15 107.7 10.0 86 150-235 51-150 (267)
485 PRK13651 cobalt transporter AT 99.2 8.7E-11 1.9E-15 109.5 10.9 86 150-235 39-155 (305)
486 PRK11432 fbpC ferric transport 99.2 1.1E-10 2.4E-15 111.0 11.7 85 149-235 37-127 (351)
487 PRK14273 phosphate ABC transpo 99.2 1.5E-10 3.3E-15 104.3 11.9 85 150-234 39-136 (254)
488 PRK14247 phosphate ABC transpo 99.2 1.6E-10 3.5E-15 103.9 11.9 87 149-235 34-133 (250)
489 PRK11124 artP arginine transpo 99.2 1.5E-10 3.3E-15 103.5 11.5 87 149-235 33-132 (242)
490 TIGR03258 PhnT 2-aminoethylpho 99.2 1.4E-10 3.1E-15 110.6 11.8 85 149-235 36-128 (362)
491 TIGR03005 ectoine_ehuA ectoine 99.2 1.6E-10 3.4E-15 104.2 11.4 87 149-235 31-137 (252)
492 KOG0063|consensus 99.2 6.7E-11 1.4E-15 113.6 9.3 90 44-133 196-287 (592)
493 PRK11701 phnK phosphonate C-P 99.2 1.5E-10 3.2E-15 104.7 11.2 86 150-235 38-141 (258)
494 cd03293 ABC_NrtD_SsuB_transpor 99.2 1.1E-10 2.4E-15 103.0 10.0 82 149-235 35-122 (220)
495 PRK10575 iron-hydroxamate tran 99.2 1.1E-10 2.4E-15 106.2 10.3 86 150-235 43-138 (265)
496 PRK10744 pstB phosphate transp 99.2 1.8E-10 3.9E-15 104.4 11.7 85 150-234 45-142 (260)
497 PRK14259 phosphate ABC transpo 99.2 1.7E-10 3.6E-15 105.4 11.5 85 150-234 45-140 (269)
498 TIGR03411 urea_trans_UrtD urea 99.2 1.3E-10 2.8E-15 103.9 10.4 87 149-235 33-134 (242)
499 TIGR03873 F420-0_ABC_ATP propo 99.2 1E-10 2.2E-15 105.7 9.8 87 149-235 32-128 (256)
500 PRK14240 phosphate transporter 99.2 2.3E-10 4.9E-15 102.9 11.9 85 150-234 35-132 (250)
No 1
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=323.54 Aligned_cols=198 Identities=25% Similarity=0.409 Sum_probs=176.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ 121 (277)
+++|+.+++.+.++.+|+.||+||||+|+||||+..++++||||||||+|+..+.+.||+++++|+++| ++|+|||+|+
T Consensus 127 ~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 127 RELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 568999999888999999999999999999999999999999999999999999999999999999765 7888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc-e--------------------e------------eeh-------------------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL-F--------------------V------------SLL------------------- 148 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~-~--------------------~------------~~~------------------- 148 (277)
|++. ||||+|||||+.+...+. . . .+.
T Consensus 207 Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GE 286 (500)
T COG1129 207 EVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGE 286 (500)
T ss_pred HHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhhcccccccCCCCcEEEEecCCCCCceeCceeEEeCCc
Confidence 9997 999999999999854331 0 0 000
Q ss_pred ---hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCC----------chhhHHhHHHHhh-
Q psy18009 149 ---QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQD----------TVLFNNSIKAIQK- 213 (277)
Q Consensus 149 ---~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd----------~~~~n~~~~~~~~- 213 (277)
..|+.|||||+++++|||+.++.+|+|.++|+++...+ .+++++||+|||+| ++..|++++.++.
T Consensus 287 IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 287 ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 02678999999999999999999999999999999877 56789999999999 6899999996643
Q ss_pred ---cccChHHHHHHHHHHHHhcCCCCCCcc
Q psy18009 214 ---NFVDMENMFDLLQETCDVIDIPQAPML 240 (277)
Q Consensus 214 ---~~~~~~~~~~~~~~~~~~l~I~~~~~~ 240 (277)
.|++.++|++.+++|+++|+||+++..
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~ 396 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIKTPSPE 396 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCcc
Confidence 279999999999999999999999875
No 2
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.5e-36 Score=287.40 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=171.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
+++.+.+||+++|+++|+.||.|+||||+|.+||+++|++||||||||.|+|.+.+.||+.++++++. +|+|+|||+++
T Consensus 122 ~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 122 KELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999875 58888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce--------------------------------eee---------------------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF--------------------------------VSL--------------------- 147 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~--------------------------------~~~--------------------- 147 (277)
|+.. |||++|||+|+++...++. ..+
T Consensus 202 Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~V 281 (501)
T COG3845 202 EVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEV 281 (501)
T ss_pred HHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEE
Confidence 9997 9999999999987432200 000
Q ss_pred ------hhcCCCCCchhHHHHHHhccccCceeEEEECCEec-cCCc-HHHHhcceEEEcCC----------chhhHHhHH
Q psy18009 148 ------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVS-QASLRQAIGVVPQD----------TVLFNNSIK 209 (277)
Q Consensus 148 ------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~-~~~~-~~~~~~~i~~vpqd----------~~~~n~~~~ 209 (277)
-..|..|.|+++|+.+|+|+.++.+|+|.++|+++ ...+ ....+.|++|||+| ++.+|..+.
T Consensus 282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~ 361 (501)
T COG3845 282 RAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361 (501)
T ss_pred ecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhh
Confidence 01267899999999999999988889999999997 4556 45567889999999 478888887
Q ss_pred HHh------hcccChHHHHHHHHHHHHhcCCCCCCccc
Q psy18009 210 AIQ------KNFVDMENMFDLLQETCDVIDIPQAPMLC 241 (277)
Q Consensus 210 ~~~------~~~~~~~~~~~~~~~~~~~l~I~~~~~~~ 241 (277)
.+. .+|+++++.++.+.+.+++|+|++++...
T Consensus 362 ~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~ 399 (501)
T COG3845 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA 399 (501)
T ss_pred hccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc
Confidence 663 35899999999999999999999776554
No 3
>KOG0055|consensus
Probab=100.00 E-value=5.3e-33 Score=289.89 Aligned_cols=140 Identities=51% Similarity=0.805 Sum_probs=126.1
Q ss_pred ccHHHhhcccccccCCCCCc-cccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec-----------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAP-MLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL----------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~----------------- 61 (277)
.+||+++++.|.++...... ......|.|+|+||+|+||. +..+|++++|.+++|+.++.
T Consensus 322 ~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055|consen 322 YRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred HHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999987654222 33446899999999999984 45799999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 402 fydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 402 FYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 (1228)
T ss_pred hcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcc
Confidence
Q ss_pred --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009 62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
|||||||||||||||+++|+|||||||||+||+++.+.+.+.|.++.+++|+|+|+|||+++..+|+|+||+
T Consensus 482 ~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME 561 (1228)
T ss_pred cccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEec
Q psy18009 134 AGEIVERG 141 (277)
Q Consensus 134 dG~iv~~g 141 (277)
+|++++.|
T Consensus 562 ~G~IvE~G 569 (1228)
T KOG0055|consen 562 EGKIVEQG 569 (1228)
T ss_pred CCEEEEec
Confidence 99998443
No 4
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-32 Score=267.25 Aligned_cols=193 Identities=21% Similarity=0.371 Sum_probs=155.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
.++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++. .|+|++||+++
T Consensus 123 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred HHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35688899987788999999999999999999999999999999999999999999999999998654 58888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce-------------------------------eee---------------------h
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VSL---------------------L 148 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~~---------------------~ 148 (277)
++.. |||+++|++|+++..++.. ... .
T Consensus 203 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~ 282 (501)
T PRK10762 203 EIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILG 282 (501)
T ss_pred HHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEE
Confidence 9986 9999999999997543210 000 0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCc----hhhHHhHHHH-hh---------
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDT----VLFNNSIKAI-QK--------- 213 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~----~~~n~~~~~~-~~--------- 213 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...++ ..++++|+||||++ .+.+.++... ..
T Consensus 283 liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 362 (501)
T PRK10762 283 VSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362 (501)
T ss_pred EecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence 138999999999999999999999999999998865443 34567899999985 3344455321 10
Q ss_pred -cccChHHHHHHHHHHHHhcCCC
Q psy18009 214 -NFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+..+.++..+.++++++.+++.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~l~ 385 (501)
T PRK10762 363 GGSLKHADEQQAVSDFIRLFNIK 385 (501)
T ss_pred ccccCHHHHHHHHHHHHHhcCCC
Confidence 0123344556788999999884
No 5
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-32 Score=266.19 Aligned_cols=193 Identities=20% Similarity=0.323 Sum_probs=154.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
.++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++. .|+|++||+++
T Consensus 127 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred HHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34688899987788999999999999999999999999999999999999999999999999999764 58888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce-----------------------------------eee------------------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF-----------------------------------VSL------------------ 147 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~-----------------------------------~~~------------------ 147 (277)
++.. |||+++|++|+++..|+.. ..+
T Consensus 207 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i 286 (510)
T PRK09700 207 EIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSV 286 (510)
T ss_pred HHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEE
Confidence 9986 9999999999997544210 000
Q ss_pred ------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCc----hhhHHhHHHH-hh--
Q psy18009 148 ------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDT----VLFNNSIKAI-QK-- 213 (277)
Q Consensus 148 ------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~----~~~n~~~~~~-~~-- 213 (277)
..+|+||||||||+++|+|+.+|++|+|+++|+++...+. ...+++|+||||++ .+.+.++... ..
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (510)
T PRK09700 287 CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISR 366 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccc
Confidence 0138999999999999999999999999999998865443 44567899999973 2333444321 10
Q ss_pred -----------cccChHHHHHHHHHHHHhcCCC
Q psy18009 214 -----------NFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 -----------~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
++.+.+..++.++++++.+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 367 SLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred ccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 1123344556788999999884
No 6
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-32 Score=264.97 Aligned_cols=193 Identities=20% Similarity=0.354 Sum_probs=155.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 116 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 116 KAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred HHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 3568888988778899999999999999999999999999999999999999999999999999865 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce-------------------------------eee----------------------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VSL---------------------- 147 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~~---------------------- 147 (277)
++.. |||+++|++|+++..++.. ...
T Consensus 196 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge 275 (491)
T PRK10982 196 EIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGE 275 (491)
T ss_pred HHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccccccccCCCCCcEEEEeCcccccCcccceeeEEEeCCc
Confidence 9986 9999999999998544310 000
Q ss_pred --hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCch----hhHHhH------HHHhh-
Q psy18009 148 --LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTV----LFNNSI------KAIQK- 213 (277)
Q Consensus 148 --~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~----~~n~~~------~~~~~- 213 (277)
..+|+||||||||+++|+|+.+|++|+|.++|+++...++ ..++++++|+||++. +.+.++ ..+..
T Consensus 276 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNY 355 (491)
T ss_pred EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhh
Confidence 0138999999999999999999999999999998876553 345778999999842 222322 21211
Q ss_pred ----cccChHHHHHHHHHHHHhcCCC
Q psy18009 214 ----NFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 ----~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
++.+.++..+.+.++++.+++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~l~ 381 (491)
T PRK10982 356 KNKVGLLDNSRMKSDTQWVIDSMRVK 381 (491)
T ss_pred cccccccCcHHHHHHHHHHHHhcCcc
Confidence 1234455677889999999885
No 7
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-32 Score=264.89 Aligned_cols=192 Identities=23% Similarity=0.387 Sum_probs=154.3
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||++++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~ 202 (501)
T PRK11288 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred HHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 468888987677889999999999999999999999999999999999999999999999999865 4588899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce--------------------------------eee----------------------
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF--------------------------------VSL---------------------- 147 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~--------------------------------~~~---------------------- 147 (277)
+.. |||+++|++|+++..++.. ...
T Consensus 203 ~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~ 282 (501)
T PRK11288 203 IFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIV 282 (501)
T ss_pred HHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEE
Confidence 986 9999999999987532210 000
Q ss_pred hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH-hh--------
Q psy18009 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI-QK-------- 213 (277)
Q Consensus 148 ~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~-~~-------- 213 (277)
..+|+||||||||+++|+|+.+|++|+|+++|+++...+ ...++++|+|+||++ .+.+.++... ..
T Consensus 283 ~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 362 (501)
T PRK11288 283 GLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR 362 (501)
T ss_pred EEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc
Confidence 014899999999999999999999999999999886544 345567899999985 4444555322 11
Q ss_pred -c-ccChHHHHHHHHHHHHhcCCC
Q psy18009 214 -N-FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 -~-~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+ +.+.+..++.+.++++.++++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~l~ 386 (501)
T PRK11288 363 AGCLINNRWEAENADRFIRSLNIK 386 (501)
T ss_pred cccccChHHHHHHHHHHHHhcCcc
Confidence 1 123334456788999999984
No 8
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.7e-31 Score=261.62 Aligned_cols=193 Identities=22% Similarity=0.384 Sum_probs=153.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+ +.++|++||+++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~ 204 (506)
T PRK13549 125 QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN 204 (506)
T ss_pred HHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 3578889998778899999999999999999999999999999999999999999999999999865 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce-------------------------------ee---------------eh------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------VS---------------LL------ 148 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~~---------------~~------ 148 (277)
++.. |||+++|++|+++..++.. .. ..
T Consensus 205 ~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~ 284 (506)
T PRK13549 205 EVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFS 284 (506)
T ss_pred HHHHhcCEEEEEECCEEeeecccccCCHHHHHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeE
Confidence 9986 9999999999987543200 00 00
Q ss_pred --------hcCCCCCchhHHHHHHhcccc-CceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH-hh
Q psy18009 149 --------QVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI-QK 213 (277)
Q Consensus 149 --------~~G~~GsGkttL~~~l~Gl~~-~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~-~~ 213 (277)
.+|+||||||||+++|+|+.+ +++|+|.++|+++...+ ....+++|+|+||++ .+.+.++... ..
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITL 364 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhh
Confidence 138899999999999999998 58999999999886444 344567899999984 3334454321 10
Q ss_pred ----c-----ccChHHHHHHHHHHHHhcCCC
Q psy18009 214 ----N-----FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 ----~-----~~~~~~~~~~~~~~~~~l~I~ 235 (277)
. +++.+..++.+.++++++++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 395 (506)
T PRK13549 365 AALDRFTGGSRIDDAAELKTILESIQRLKVK 395 (506)
T ss_pred hhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence 1 124444557789999999985
No 9
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.98 E-value=3.6e-31 Score=261.15 Aligned_cols=193 Identities=21% Similarity=0.389 Sum_probs=153.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
.++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++. .++|++||+++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 122 KQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP 201 (510)
T ss_pred HHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34688899987788999999999999999999999999999999999999999999999999998654 58888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce-------------------------------------------eee----------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF-------------------------------------------VSL---------- 147 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------------------~~~---------- 147 (277)
++.. |||+++|++|+++..|+.. ...
T Consensus 202 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~ 281 (510)
T PRK15439 202 EIRQLADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRN 281 (510)
T ss_pred HHHHhCCEEEEEECCEEEEecChHHcCHHHHHHHHhCccccccccccccccccccccccccCCCCceEEEeCCCCCCccc
Confidence 9986 9999999999998654310 000
Q ss_pred -----------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH-HHhcceEEEcCCc----hhhHHhHHH-
Q psy18009 148 -----------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQAIGVVPQDT----VLFNNSIKA- 210 (277)
Q Consensus 148 -----------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~vpqd~----~~~n~~~~~- 210 (277)
..+|+||||||||+++|+|+.+|++|+|.++|+++...++. ..+++|+|+||++ .+.+.++..
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~ 361 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWN 361 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHH
Confidence 01389999999999999999999999999999988765543 3467899999984 222233321
Q ss_pred Hh------h-cccChHHHHHHHHHHHHhcCCC
Q psy18009 211 IQ------K-NFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 211 ~~------~-~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+. . .+....+.++.++++++.+++.
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 362 VCALTHNRRGFWIKPARENAVLERYRRALNIK 393 (510)
T ss_pred HHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence 11 0 1123344566788999999985
No 10
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=9.9e-31 Score=257.01 Aligned_cols=193 Identities=20% Similarity=0.393 Sum_probs=150.7
Q ss_pred HHhhcccCccccc-CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009 43 RAILKNISFTVPA-GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~-~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l 120 (277)
.++|+.+++.... ++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++. .|+|+|||++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 122 KNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred HHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3568888886443 5779999999999999999999999999999999999999999999999998664 5888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce-------------------------------e-------ee--------h-----
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF-------------------------------V-------SL--------L----- 148 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~-------------------------------~-------~~--------~----- 148 (277)
+++.. |||+++|++|+++..++.. . .. .
T Consensus 202 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~ 281 (500)
T TIGR02633 202 NEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSF 281 (500)
T ss_pred HHHHHhCCEEEEEeCCeEeeecCcccCCHHHHHHHHhCccccccccccccCCCCceEEEeCCccccccccccccccccee
Confidence 99986 9999999999987432100 0 00 0
Q ss_pred ---------hcCCCCCchhHHHHHHhccccC-ceeEEEECCEeccCCc-HHHHhcceEEEcCCc----hhhHHhHHHH--
Q psy18009 149 ---------QVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKTVS-QASLRQAIGVVPQDT----VLFNNSIKAI-- 211 (277)
Q Consensus 149 ---------~~G~~GsGkttL~~~l~Gl~~~-~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~----~~~n~~~~~~-- 211 (277)
.+|+||||||||+++|+|+.+| .+|+|.++|+++...+ ...++++|+|+||++ .+.+.++...
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~ 361 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNIT 361 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhc
Confidence 1388999999999999999985 7999999999886433 345677899999995 3333444321
Q ss_pred ----hhc----ccChHHHHHHHHHHHHhcCCC
Q psy18009 212 ----QKN----FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 212 ----~~~----~~~~~~~~~~~~~~~~~l~I~ 235 (277)
... .++....++.++++++++++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 362 LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 100 123344556788999999884
No 11
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=9.3e-31 Score=259.10 Aligned_cols=192 Identities=28% Similarity=0.399 Sum_probs=150.5
Q ss_pred HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009 43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs 117 (277)
.++|+.+++.. ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|+||
T Consensus 135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 35688888863 24788999999999999999999999999999999999999999999999999864 46888999
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCc----------------------------------------e--e---------
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSL----------------------------------------F--V--------- 145 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~----------------------------------------~--~--------- 145 (277)
|+++++.. ||||++|++|+++..|+. . .
T Consensus 215 Hd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 294 (529)
T PRK15134 215 HNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKR 294 (529)
T ss_pred CcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCcccccc
Confidence 99999986 999999999998754320 0 0
Q ss_pred ------eeh-------------hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCc--
Q psy18009 146 ------SLL-------------QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDT-- 201 (277)
Q Consensus 146 ------~~~-------------~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~-- 201 (277)
.+. .+|+||||||||+++|+|+.+ .+|+|+++|+++...+.. ..+++|+|+||++
T Consensus 295 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 295 TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 000 138899999999999999986 789999999988654432 2356799999996
Q ss_pred -hhhHHhHHHH-hhc------ccChHHHHHHHHHHHHhcCCC
Q psy18009 202 -VLFNNSIKAI-QKN------FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 202 -~~~n~~~~~~-~~~------~~~~~~~~~~~~~~~~~l~I~ 235 (277)
...+.++... ... .++.+...+.+.++++++++.
T Consensus 374 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 415 (529)
T PRK15134 374 SLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415 (529)
T ss_pred hcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCC
Confidence 2333444321 111 134444567788999999985
No 12
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=7.1e-31 Score=257.49 Aligned_cols=193 Identities=30% Similarity=0.432 Sum_probs=153.6
Q ss_pred HHhhcccCcccccCC--eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 43 RAILKNISFTVPAGK--TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~--~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
.++|+.+++...... ++..|||||||||.||+||+.+|++||+||||++||+..+.+++++|+++.+ +.++|+|||
T Consensus 134 ~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH 213 (539)
T COG1123 134 VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213 (539)
T ss_pred HHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC
Confidence 457899999766554 8999999999999999999999999999999999999999999999999975 347888999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecCce--------------------------ee--------------e----------
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGSLF--------------------------VS--------------L---------- 147 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~--------------------------~~--------------~---------- 147 (277)
++.-+.+ ||||+||.+|++++.|+.. .. +
T Consensus 214 Dl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~ 293 (539)
T COG1123 214 DLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSR 293 (539)
T ss_pred CHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccc
Confidence 9999987 9999999999999877510 00 0
Q ss_pred ---------------------------hhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEc
Q psy18009 148 ---------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVP 198 (277)
Q Consensus 148 ---------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vp 198 (277)
..+|.+|||||||+++|.|+.+|++|.|.++|+++.... ....++.+-+|+
T Consensus 294 ~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvF 373 (539)
T COG1123 294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF 373 (539)
T ss_pred cccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEE
Confidence 013789999999999999999999999999998843222 345677899999
Q ss_pred CCc---hhhHHhHHHHh------hcccChHHHHHHHHHHHHhcCCC
Q psy18009 199 QDT---VLFNNSIKAIQ------KNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 199 qd~---~~~n~~~~~~~------~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
||| .-...||...- ......++.++.+.+..+..+..
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 996 23334443321 12233455556688888888777
No 13
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=263.38 Aligned_cols=192 Identities=29% Similarity=0.412 Sum_probs=152.2
Q ss_pred HhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 44 AILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
++|+.+++.. ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++++++.+ +.|+|+|||
T Consensus 148 ~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itH 227 (623)
T PRK10261 148 RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227 (623)
T ss_pred HHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 4688888852 36788999999999999999999999999999999999999999999999999964 468889999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecC-------------------------------------------------------
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGS------------------------------------------------------- 142 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~------------------------------------------------------- 142 (277)
+++++.. ||||++|++|++++.|+
T Consensus 228 dl~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (623)
T PRK10261 228 DMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTV 307 (623)
T ss_pred CHHHHHHhCCEEEEeeCCeecccCCHHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccc
Confidence 9999986 99999999999864221
Q ss_pred ----cee-------ee-------------h-----------------hcCCCCCchhHHHHHHhccccCceeEEEECCEe
Q psy18009 143 ----LFV-------SL-------------L-----------------QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 181 (277)
Q Consensus 143 ----~~~-------~~-------------~-----------------~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~ 181 (277)
... .. . .+|.||||||||+++|+|+.+|.+|+|+++|++
T Consensus 308 ~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 000 00 0 137899999999999999999999999999999
Q ss_pred ccCCcH---HHHhcceEEEcCCc---hhhHHhHHHH-h-----hcccChHHHHHHHHHHHHhcCCC
Q psy18009 182 IKTVSQ---ASLRQAIGVVPQDT---VLFNNSIKAI-Q-----KNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 182 ~~~~~~---~~~~~~i~~vpqd~---~~~n~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+...+. ..++++|+||||++ ...+.++... . .++.+.++.++.+.++++.+++.
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~ 453 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL 453 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence 875543 23467899999996 2333455322 1 12223445567888999999985
No 14
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.1e-30 Score=252.89 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=150.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
.++++.+++....++++..|||||||||+||+||+.+|++|||||||++||+..++.+.++|+++++. .|+|++||+++
T Consensus 117 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 117 EQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 45788999987789999999999999999999999999999999999999999999999999998764 58888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce----------------------------------------eee-------------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF----------------------------------------VSL------------- 147 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~----------------------------------------~~~------------- 147 (277)
++.. ||++++|++|+++..|+.. ...
T Consensus 197 ~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il 276 (490)
T PRK10938 197 EIPDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL 276 (490)
T ss_pred HHHhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEECCeeEE
Confidence 9987 9999999999987543210 000
Q ss_pred -------------hhcCCCCCchhHHHHHHhccccC-ceeEEEECCEeccC-CcHHHHhcceEEEcCCchh-hH--HhHH
Q psy18009 148 -------------LQVGQSGAGKSTIIRLLFRFYDV-ESGDIFIDNQNIKT-VSQASLRQAIGVVPQDTVL-FN--NSIK 209 (277)
Q Consensus 148 -------------~~~G~~GsGkttL~~~l~Gl~~~-~~G~i~~~g~~~~~-~~~~~~~~~i~~vpqd~~~-~n--~~~~ 209 (277)
..+|+||||||||+++|+|+.++ .+|+|+++|+++.. ......+++|+|+||++.+ ++ .++.
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 356 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHH
Confidence 01389999999999999998775 68999999987632 2233456789999998633 21 2333
Q ss_pred HHhh-c------cc--ChHHHHHHHHHHHHhcCCCC
Q psy18009 210 AIQK-N------FV--DMENMFDLLQETCDVIDIPQ 236 (277)
Q Consensus 210 ~~~~-~------~~--~~~~~~~~~~~~~~~l~I~~ 236 (277)
.+-. . +. ..++..+.++++++.+++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 392 (490)
T PRK10938 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK 392 (490)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCch
Confidence 2211 1 11 12334567889999998853
No 15
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=4.4e-30 Score=253.65 Aligned_cols=193 Identities=24% Similarity=0.379 Sum_probs=149.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++.+ +.|+|+|||+++
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 468889997777889999999999999999999999999999999999999999999999999854 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc--------------------------------eeee----------h----------
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL--------------------------------FVSL----------L---------- 148 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~--------------------------------~~~~----------~---------- 148 (277)
++.. |||+++|++|+++..|+. .... .
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G 310 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG 310 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCC
Confidence 9986 999999999998754320 0000 0
Q ss_pred ----hcCCCCCchhHHHHHHhccccCceeEEEEC-CEe---ccCCc---HHHHhcceEEEcCCchhh-HHhHHHHhh---
Q psy18009 149 ----QVGQSGAGKSTIIRLLFRFYDVESGDIFID-NQN---IKTVS---QASLRQAIGVVPQDTVLF-NNSIKAIQK--- 213 (277)
Q Consensus 149 ----~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~-g~~---~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~~~--- 213 (277)
.+|+||||||||+++|+|+.+|++|+|.++ |.+ +...+ ...++++|+|+||++.++ +.++...-.
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 138899999999999999999999999996 643 22222 123456799999986433 345432211
Q ss_pred cc-cChHHHHHHHHHHHHhcCCCC
Q psy18009 214 NF-VDMENMFDLLQETCDVIDIPQ 236 (277)
Q Consensus 214 ~~-~~~~~~~~~~~~~~~~l~I~~ 236 (277)
.+ ...+...+.+.++++.+++..
T Consensus 391 ~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 391 GLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCC
Confidence 11 233334567888999999853
No 16
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=241.97 Aligned_cols=177 Identities=33% Similarity=0.464 Sum_probs=145.0
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||||||.||.||+.+|++||-||||.+||..-..++++++++|.+. + .+++|||+|.-+.. ||||.||++|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 9999999999999999999999999999999999999999999999764 4 77789999999997 9999999999999
Q ss_pred EecCceee----------------------------------------------------------------------eh
Q psy18009 139 ERGSLFVS----------------------------------------------------------------------LL 148 (277)
Q Consensus 139 ~~g~~~~~----------------------------------------------------------------------~~ 148 (277)
+.|..... +-
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlG 317 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLG 317 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEE
Confidence 77641100 00
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---HhcceEEEcCCc---hhhHHhHHHH-------hhcc
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQDT---VLFNNSIKAI-------QKNF 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~~~~i~~vpqd~---~~~n~~~~~~-------~~~~ 215 (277)
.+|.+|||||||.++|.++.++. |+|+++|+++...+..+ +++.+-.||||| .-...+|..+ +..-
T Consensus 318 lVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ 396 (534)
T COG4172 318 LVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK 396 (534)
T ss_pred EEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC
Confidence 14789999999999999999887 99999999998777443 578899999996 2333455433 1225
Q ss_pred cChHHHHHHHHHHHHhcCCCCCCc
Q psy18009 216 VDMENMFDLLQETCDVIDIPQAPM 239 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~~~~~ 239 (277)
++.....+.+.+.++.-+...+++
T Consensus 397 ls~~eR~~rv~~aL~EVGLDp~~r 420 (534)
T COG4172 397 LSAAERDQRVIEALEEVGLDPATR 420 (534)
T ss_pred CCHHHHHHHHHHHHHHcCCChhHh
Confidence 777777888888888877765543
No 17
>KOG0058|consensus
Probab=99.97 E-value=1.3e-30 Score=259.87 Aligned_cols=146 Identities=45% Similarity=0.705 Sum_probs=131.2
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+|+|++++++|.+... ....+....|.|+|+||+|.||. +..+|++++|++.||+.|+.
T Consensus 439 ~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred HHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999998654 22121256899999999999984 56799999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 518 Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~ 597 (716)
T KOG0058|consen 518 YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTV 597 (716)
T ss_pred cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccc
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||+||||||++||+||||||+||+||.++...+.+.+.++.++.|+|+|.|||+.+..||+|+|+++
T Consensus 598 VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 598 VGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDK 677 (716)
T ss_pred cCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcC
Confidence 9999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cEEEEecCceeeeh
Q psy18009 135 GEIVERGSLFVSLL 148 (277)
Q Consensus 135 G~iv~~g~~~~~~~ 148 (277)
|++++.|++.+...
T Consensus 678 G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 678 GRVVEMGTHDELLS 691 (716)
T ss_pred CeEEecccHHHHhh
Confidence 99999998766543
No 18
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=3.4e-29 Score=254.85 Aligned_cols=147 Identities=46% Similarity=0.669 Sum_probs=131.8
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.++|.+........+.-.|.|+|+||+|+|..+ ..+|+++++++++|++++.
T Consensus 444 ~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 444 ERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred HHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999865433223334567999999999999765 5699999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 524 ~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|.++..++|+|+|+||++.+..||||+||++|
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeeeh
Q psy18009 136 EIVERGSLFVSLL 148 (277)
Q Consensus 136 ~iv~~g~~~~~~~ 148 (277)
+++++|++.+...
T Consensus 684 kiv~~gs~~ell~ 696 (709)
T COG2274 684 KIVEQGSHEELLA 696 (709)
T ss_pred ceeccCCHHHHHH
Confidence 9999999876543
No 19
>KOG0055|consensus
Probab=99.96 E-value=6.4e-29 Score=259.51 Aligned_cols=147 Identities=48% Similarity=0.746 Sum_probs=133.5
Q ss_pred ccHHHhhcccccccCCC-CCccccccCceEEEeeeeeeeC--chHHhhcccCcccccCCeeec-----------------
Q psy18009 2 ENMFDLLQETCDVIDIP-QAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLAL----------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~nvsf~Y~--~~~~vL~~l~l~i~~~~~v~~----------------- 61 (277)
.+||++++++|.++..+ .+......+|.|+|+||+|+|| ++..+|+++++++.+|+.++.
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999877543 3434456789999999999998 457799999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC
Confidence
Q ss_pred --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009 62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
||||||||+|||||+++||+||||||.||+||.++.+.+.+.|.+...++|+|+|+|||+.+.+||.|.|++
T Consensus 1119 ~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLK 1198 (1228)
T ss_pred ccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCceeeeh
Q psy18009 134 AGEIVERGSLFVSLL 148 (277)
Q Consensus 134 dG~iv~~g~~~~~~~ 148 (277)
+|++++.|++...+.
T Consensus 1199 ~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCEEEecccHHHHHh
Confidence 999999999876543
No 20
>KOG0056|consensus
Probab=99.96 E-value=4.7e-29 Score=239.75 Aligned_cols=149 Identities=67% Similarity=0.970 Sum_probs=142.3
Q ss_pred CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
|||+|+++.|++++.|.|..++.....|.|+|+||+|.|++++++|++++|++.||+.++.
T Consensus 509 mEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff 588 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF 588 (790)
T ss_pred HHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh
Confidence 7999999999999999999998888899999999999999999999999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 589 dv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~V 668 (790)
T KOG0056|consen 589 DVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRV 668 (790)
T ss_pred hccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
|||||||||+|||+++++|.+++|||+||+||..+.+.+...+.++++++|.|+|.||++.+-+||.|+|+++|
T Consensus 669 GERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 669 GERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred hhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeeehh
Q psy18009 136 EIVERGSLFVSLLQ 149 (277)
Q Consensus 136 ~iv~~g~~~~~~~~ 149 (277)
+|++.|.+++....
T Consensus 749 ~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 749 RIVERGRHEELLKR 762 (790)
T ss_pred eEeecCcHHHHHhc
Confidence 99999998766544
No 21
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=216.70 Aligned_cols=101 Identities=36% Similarity=0.536 Sum_probs=90.6
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchh
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev 123 (277)
+|+++|+.-..+.++..|||||||||+|||||+++|++++||||||+|||+-..++++++++|++.| |.|++||.|..+
T Consensus 120 lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred HHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 4566666666666666699999999999999999999999999999999999999999999998876 888999999999
Q ss_pred cc-CceEEEeeCcEEEEecCcee
Q psy18009 124 IH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
.. ||||+.|++|++++.|++..
T Consensus 200 r~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 200 REVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHhhheEEEeeCCEEEEecCHHH
Confidence 98 99999999999999887654
No 22
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.5e-28 Score=238.43 Aligned_cols=179 Identities=23% Similarity=0.322 Sum_probs=139.6
Q ss_pred HhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 44 AILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.+|+.+++... .++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|++ .+.|+|+|||++++
T Consensus 137 ~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~ 214 (530)
T PRK15064 137 ELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHF 214 (530)
T ss_pred HHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHH
Confidence 57888998643 3568999999999999999999999999999999999999999999999974 35689999999999
Q ss_pred hcc-CceEEEeeCcEEE-EecCc---------------------------------------------------------
Q psy18009 123 IIH-ADEILVMHAGEIV-ERGSL--------------------------------------------------------- 143 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv-~~g~~--------------------------------------------------------- 143 (277)
+.. |||+++|++|+++ ..|+.
T Consensus 215 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (530)
T PRK15064 215 LNSVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKL 294 (530)
T ss_pred HHhhcceEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccc
Confidence 986 9999999999984 32210
Q ss_pred ----------e--------------eee--------------------------hhcCCCCCchhHHHHHHhccccCcee
Q psy18009 144 ----------F--------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESG 173 (277)
Q Consensus 144 ----------~--------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G 173 (277)
. ... ..+|+||||||||+++|+|+.+|++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G 374 (530)
T PRK15064 295 EEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374 (530)
T ss_pred cccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 0 000 01388999999999999999999999
Q ss_pred EEEECCEeccCCcHHHHhcceEEEcCCch--hh-HHhHHHHhhcccChHHHHHHHHHHHHhcCCC
Q psy18009 174 DIFIDNQNIKTVSQASLRQAIGVVPQDTV--LF-NNSIKAIQKNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 174 ~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+|.++|+ ++++|+||++. ++ +.++...-..+.......+.++++++.+++.
T Consensus 375 ~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 428 (530)
T PRK15064 375 TVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS 428 (530)
T ss_pred EEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC
Confidence 9999873 46999999862 33 3455432111211222345678899999884
No 23
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3e-27 Score=237.32 Aligned_cols=180 Identities=23% Similarity=0.364 Sum_probs=139.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.++++.+++....++.+..|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++.++.++|+|||++++
T Consensus 194 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~ 273 (590)
T PRK13409 194 DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV 273 (590)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45788999988889999999999999999999999999999999999999999999999999999775588899999999
Q ss_pred hcc-CceEEEeeCc-----EEEEe------------c---------------------------Cceee-----------
Q psy18009 123 IIH-ADEILVMHAG-----EIVER------------G---------------------------SLFVS----------- 146 (277)
Q Consensus 123 v~~-~Drv~vL~dG-----~iv~~------------g---------------------------~~~~~----------- 146 (277)
+.. |||+++|+++ .+... + .....
T Consensus 274 l~~~~D~v~vl~~~~g~~g~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~ 353 (590)
T PRK13409 274 LDYLADNVHIAYGEPGAYGVVSKPKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDF 353 (590)
T ss_pred HHHhCCEEEEEeCCccccceecchhHHHHhHHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEECCE
Confidence 987 9999999873 11100 0 00000
Q ss_pred --------------ehhcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH
Q psy18009 147 --------------LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI 211 (277)
Q Consensus 147 --------------~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~ 211 (277)
...+|+||||||||+++|+|+.+|++|+|.++ .+|+|+||++ ..++.|+...
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHH
Confidence 00148999999999999999999999999885 1599999985 3455555432
Q ss_pred hhcccChHHHHHHHHHHHHhcCCC
Q psy18009 212 QKNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
-............+.++++.+++.
T Consensus 421 l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 421 LRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred HHHHhhhcChHHHHHHHHHHCCCH
Confidence 111111111223567889999886
No 24
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.95 E-value=1.1e-27 Score=238.80 Aligned_cols=146 Identities=53% Similarity=0.796 Sum_probs=129.4
Q ss_pred CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
++|+++++++++++.+.+.. .....+.|+|+||+|+|++++.+|+++++++.+|++++.
T Consensus 302 ~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 302 AERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred HHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 36899999998776554332 233457799999999998777899999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 380 ~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 380 DPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++||||++++|++||||||||+||+++.+.+.+.+.++.+++|+|+|+||++.+..||+|+||++|
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G 539 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999888777999999999999999999999999
Q ss_pred EEEEecCceeeeh
Q psy18009 136 EIVERGSLFVSLL 148 (277)
Q Consensus 136 ~iv~~g~~~~~~~ 148 (277)
++++.|++.+...
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999866543
No 25
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=4.1e-27 Score=234.67 Aligned_cols=178 Identities=25% Similarity=0.327 Sum_probs=136.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 123 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev 123 (277)
.+|+.+++. ..++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|||+++++
T Consensus 147 ~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~ 223 (556)
T PRK11819 147 IAMDALRCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFL 223 (556)
T ss_pred HHHHhCCCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHH
Confidence 467888886 3688999999999999999999999999999999999999999999999999874 5899999999999
Q ss_pred cc-CceEEEeeCcEEE-EecCce---------------------------------------------------------
Q psy18009 124 IH-ADEILVMHAGEIV-ERGSLF--------------------------------------------------------- 144 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv-~~g~~~--------------------------------------------------------- 144 (277)
.. ||+|++|++|+++ ..|+..
T Consensus 224 ~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T PRK11819 224 DNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEY 303 (556)
T ss_pred HhhcCeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccc
Confidence 87 9999999999986 222100
Q ss_pred ---------------------eee--------------------------hhcCCCCCchhHHHHHHhccccCceeEEEE
Q psy18009 145 ---------------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFI 177 (277)
Q Consensus 145 ---------------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~ 177 (277)
... ..+|+||||||||+++|+|+.+|++|+|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~ 383 (556)
T PRK11819 304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383 (556)
T ss_pred cccCCCceeecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 000 013889999999999999999999999999
Q ss_pred CCEeccCCcHHHHhcceEEEcCCc-h-hhHHhHHHH-hhc--ccChHHHHHHHHHHHHhcCCC
Q psy18009 178 DNQNIKTVSQASLRQAIGVVPQDT-V-LFNNSIKAI-QKN--FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 178 ~g~~~~~~~~~~~~~~i~~vpqd~-~-~~n~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~I~ 235 (277)
++. + .|+|+||++ . ..+.|+... ... ..........+..+++.+++.
T Consensus 384 ~~~-~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 435 (556)
T PRK11819 384 GET-V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFK 435 (556)
T ss_pred CCc-e----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCC
Confidence 542 1 599999985 2 333455322 111 111111122356788998884
No 26
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=8.9e-27 Score=232.01 Aligned_cols=177 Identities=24% Similarity=0.323 Sum_probs=135.0
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhc
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTII 124 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~ 124 (277)
+++.+++.. .++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|||+++++.
T Consensus 146 ~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~ 222 (552)
T TIGR03719 146 AMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD 222 (552)
T ss_pred HHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 566777753 578899999999999999999999999999999999999999999999998873 58999999999998
Q ss_pred c-CceEEEeeCcEEE-EecCce----------------------------------------------------------
Q psy18009 125 H-ADEILVMHAGEIV-ERGSLF---------------------------------------------------------- 144 (277)
Q Consensus 125 ~-~Drv~vL~dG~iv-~~g~~~---------------------------------------------------------- 144 (277)
. ||++++|++|+++ ..|+..
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQ 302 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhccc
Confidence 7 9999999999975 222100
Q ss_pred --------------------eee--------------------------hhcCCCCCchhHHHHHHhccccCceeEEEEC
Q psy18009 145 --------------------VSL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178 (277)
Q Consensus 145 --------------------~~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~ 178 (277)
..+ ..+|+||||||||+++|+|+.+|++|+|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 303 KRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382 (552)
T ss_pred ccCCCceeecCCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence 000 0138999999999999999999999999995
Q ss_pred CEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHH-hhcc--cChHHHHHHHHHHHHhcCCC
Q psy18009 179 NQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAI-QKNF--VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 179 g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~I~ 235 (277)
+. + .|+|+||++ ...+.|+... .... .........+.++++.+++.
T Consensus 383 ~~-~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 433 (552)
T TIGR03719 383 ET-V----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFK 433 (552)
T ss_pred Cc-e----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCC
Confidence 42 1 599999985 2334455432 1111 01111122356788988885
No 27
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=3.1e-27 Score=236.16 Aligned_cols=145 Identities=31% Similarity=0.486 Sum_probs=122.1
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+|+.++++.+++.......+......+.|+|+||+|.|++++.+|+++++++.+|++++.
T Consensus 322 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p 401 (588)
T PRK11174 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred HHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 578888877654221111111111235699999998876666799999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence
Q ss_pred ----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009 62 ----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 137 (277)
Q Consensus 62 ----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i 137 (277)
||||||||++||||++++|++||||||||+||+++.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence 9999999999999999999999999999999999999999999999888899999999998888999999999999
Q ss_pred EEecCceee
Q psy18009 138 VERGSLFVS 146 (277)
Q Consensus 138 v~~g~~~~~ 146 (277)
++.|++.+.
T Consensus 562 ~e~G~~~eL 570 (588)
T PRK11174 562 VQQGDYAEL 570 (588)
T ss_pred eecCCHHHH
Confidence 999987654
No 28
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3e-27 Score=224.09 Aligned_cols=148 Identities=64% Similarity=0.916 Sum_probs=139.4
Q ss_pred CccHHHhhcccccccCCCCCcccc-ccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec------------------
Q psy18009 1 MENMFDLLQETCDVIDIPQAPMLC-VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
||+++++++.+.++.+.++.+++| ...|.+.|.||+|.|.+.+++|.++++++.+|+.++.
T Consensus 233 me~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF 312 (497)
T COG5265 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312 (497)
T ss_pred HHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH
Confidence 688999999999999988899888 5678999999999999899999999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 313 yD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~ 392 (497)
T COG5265 313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392 (497)
T ss_pred hCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
|||||||||+|||+++.+|+||+|||.||+||..+.+.+...|+++..+.|.++|.|||+.+..||.|+||++
T Consensus 393 VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~ 472 (497)
T COG5265 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN 472 (497)
T ss_pred cchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCceeeeh
Q psy18009 135 GEIVERGSLFVSLL 148 (277)
Q Consensus 135 G~iv~~g~~~~~~~ 148 (277)
|+|++.|.+...+.
T Consensus 473 g~i~erg~h~~ll~ 486 (497)
T COG5265 473 GRIVERGTHEELLA 486 (497)
T ss_pred CEEEecCcHHHHHH
Confidence 99999999865443
No 29
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-26 Score=231.49 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=139.2
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
..+|+.+||. ...++++..|||||||||+||+||+.+|++|||||||++||+.+...|.+.|+++ ++++|+|||+++
T Consensus 130 ~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~ 207 (638)
T PRK10636 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRD 207 (638)
T ss_pred HHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence 4578999996 4678899999999999999999999999999999999999999999999999886 468999999999
Q ss_pred hhcc-CceEEEeeCcEEEE-ecC---------------------------------------------------------
Q psy18009 122 TIIH-ADEILVMHAGEIVE-RGS--------------------------------------------------------- 142 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~-~g~--------------------------------------------------------- 142 (277)
++.. |||+++|++|++.. .|.
T Consensus 208 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~ 287 (638)
T PRK10636 208 FLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERME 287 (638)
T ss_pred HHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Confidence 9986 99999999999852 110
Q ss_pred ---c-----ee---------------ee--------------------------hhcCCCCCchhHHHHHHhccccCcee
Q psy18009 143 ---L-----FV---------------SL--------------------------LQVGQSGAGKSTIIRLLFRFYDVESG 173 (277)
Q Consensus 143 ---~-----~~---------------~~--------------------------~~~G~~GsGkttL~~~l~Gl~~~~~G 173 (277)
. .. .. ..+|+||||||||+++|+|+.+|++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 367 (638)
T PRK10636 288 LIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367 (638)
T ss_pred cccccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 0 00 00 01388999999999999999999999
Q ss_pred EEEECCEeccCCcHHHHhcceEEEcCCch--h-hHHhHHHHhhcccChHHHHHHHHHHHHhcCCC
Q psy18009 174 DIFIDNQNIKTVSQASLRQAIGVVPQDTV--L-FNNSIKAIQKNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 174 ~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
+|.+++. ..|+|+||+.. + .+.++...-.. .......+.+.++++.+++.
T Consensus 368 ~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~l~ 420 (638)
T PRK10636 368 EIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLAR-LAPQELEQKLRDYLGGFGFQ 420 (638)
T ss_pred eEEECCC-----------EEEEEecCcchhhCCccchHHHHHHH-hCchhhHHHHHHHHHHcCCC
Confidence 9999742 25999999742 1 12232211011 12233456678899999885
No 30
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=9e-27 Score=254.05 Aligned_cols=147 Identities=31% Similarity=0.521 Sum_probs=128.9
Q ss_pred CccHHHhhcccccccCC---CCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009 1 MENMFDLLQETCDVIDI---PQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL--------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~--------------- 61 (277)
++|+.++++.+++.... ...++.|+..|.|+|+||+|+|+++ +.+|+++++++.+|++++.
T Consensus 1203 ~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232 1203 VERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred HHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 36888888877664321 1123346778899999999999654 5799999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1283 ~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred hCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCC
Confidence
Q ss_pred ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009 62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus 1363 t~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL 1442 (1495)
T PLN03232 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVL 1442 (1495)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred eCcEEEEecCceeee
Q psy18009 133 HAGEIVERGSLFVSL 147 (277)
Q Consensus 133 ~dG~iv~~g~~~~~~ 147 (277)
++|++++.|++....
T Consensus 1443 ~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1443 SSGQVLEYDSPQELL 1457 (1495)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999986544
No 31
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.8e-27 Score=215.82 Aligned_cols=105 Identities=36% Similarity=0.559 Sum_probs=93.6
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ 121 (277)
++|+-+|+.-..+.++++|||||||||+|||||+.+|+||+.|||||+|||++.+.++++|+++.+. -|+++|||.|+
T Consensus 124 elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred HHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 4566677777777777779999999999999999999999999999999999999999999999764 48888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCceeeeh
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFVSLL 148 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~~~~ 148 (277)
-+.. ||||.||++|++++.|+....+.
T Consensus 204 Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 204 VVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 9997 99999999999999998765544
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=1.4e-26 Score=253.69 Aligned_cols=148 Identities=32% Similarity=0.510 Sum_probs=129.4
Q ss_pred CccHHHhhcccccccC---CCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009 1 MENMFDLLQETCDVID---IPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL--------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~--------------- 61 (277)
++|+.++++.+++... ....++.|+..|.|+|+||+|+|+++ +.+|++++|++.+|++++.
T Consensus 1206 veRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130 1206 VERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred HHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3678888877666432 11233457778999999999999754 4699999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1286 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130 1286 FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred hCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccC
Confidence
Q ss_pred ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009 62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
||||||||++|||||+++|+|||||||||+||.++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus 1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVL 1445 (1622)
T PLN03130 1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVL 1445 (1622)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred eCcEEEEecCceeeeh
Q psy18009 133 HAGEIVERGSLFVSLL 148 (277)
Q Consensus 133 ~dG~iv~~g~~~~~~~ 148 (277)
++|++++.|++.....
T Consensus 1446 d~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1446 DAGRVVEFDTPENLLS 1461 (1622)
T ss_pred ECCEEEEeCCHHHHHh
Confidence 9999999999876543
No 33
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=225.73 Aligned_cols=144 Identities=36% Similarity=0.562 Sum_probs=126.1
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++++++.... +.+... ....++++||+|+|+.. ..+|++++|++.+|++++.
T Consensus 311 ~Rl~~i~~q~~e~~~~-~~~~~~-~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 311 RRLNDILDQKPEVTFP-DEQTAT-TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred HHHhhhccCCcccCCC-ccccCC-ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 5788888888886543 222111 12278999999999865 4799999999999999974
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 389 ~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++|||+|++|++++||||||.+||+.+.+++++.+.+..+++|+|+|||++..+..||||+||++|
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCceeee
Q psy18009 136 EIVERGSLFVSL 147 (277)
Q Consensus 136 ~iv~~g~~~~~~ 147 (277)
+++++|.+....
T Consensus 549 kiie~G~~~~Ll 560 (573)
T COG4987 549 KIIEEGTHAELL 560 (573)
T ss_pred eeeecCCHHhhh
Confidence 999999876543
No 34
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=2e-26 Score=234.74 Aligned_cols=144 Identities=40% Similarity=0.589 Sum_probs=123.3
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++..............+.|+|+||+|+|+. .+.+|+++++++.+|++++.
T Consensus 436 ~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 436 QSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6788888887653322111111223577999999999974 35699999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 516 ~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i 595 (694)
T TIGR03375 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQI 595 (694)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCccccccee
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++||||++++|++||||||||+||+++.+.+.+.+.++.+++|+|+||||++.+..||||++|++|
T Consensus 596 ~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 596 GERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999998888999999999988789999999999
Q ss_pred EEEEecCcee
Q psy18009 136 EIVERGSLFV 145 (277)
Q Consensus 136 ~iv~~g~~~~ 145 (277)
++++.|++.+
T Consensus 676 ~i~e~G~~~e 685 (694)
T TIGR03375 676 RIVADGPKDQ 685 (694)
T ss_pred EEEeeCCHHH
Confidence 9999998754
No 35
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=2.6e-26 Score=232.32 Aligned_cols=92 Identities=29% Similarity=0.477 Sum_probs=85.5
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
..+|+.+++. .++++..|||||||||+|||||+.+|++|||||||++||+.+.+.|.+.|+++. +++|+|||+.++
T Consensus 140 ~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~ 215 (635)
T PRK11147 140 NEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSF 215 (635)
T ss_pred HHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHH
Confidence 4578888886 488999999999999999999999999999999999999999999999999884 689999999999
Q ss_pred hcc-CceEEEeeCcEEE
Q psy18009 123 IIH-ADEILVMHAGEIV 138 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv 138 (277)
+.. ||+|++|++|+++
T Consensus 216 l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 216 IRNMATRIVDLDRGKLV 232 (635)
T ss_pred HHHhcCeEEEEECCEEE
Confidence 986 9999999999986
No 36
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.94 E-value=1.7e-26 Score=252.20 Aligned_cols=147 Identities=32% Similarity=0.493 Sum_probs=128.7
Q ss_pred CccHHHhhcccccccC---CCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009 1 MENMFDLLQETCDVID---IPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL--------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~--------------- 61 (277)
++|+.++++.+++... ....+..|+..|.|+|+||+|+|++. ..+|++++|++.+|++++.
T Consensus 1253 ~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred HHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3688888877665431 11223346778999999999999754 5699999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1333 ~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred hcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCC
Confidence
Q ss_pred ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009 62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
||||||||++|||||+++|+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||||+||
T Consensus 1413 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVl 1492 (1522)
T TIGR00957 1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVL 1492 (1522)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eCcEEEEecCceeee
Q psy18009 133 HAGEIVERGSLFVSL 147 (277)
Q Consensus 133 ~dG~iv~~g~~~~~~ 147 (277)
++|++++.|++....
T Consensus 1493 d~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1493 DKGEVAEFGAPSNLL 1507 (1522)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999986543
No 37
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=2.9e-26 Score=234.06 Aligned_cols=144 Identities=35% Similarity=0.542 Sum_probs=122.4
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+|+.++++.+++..+.......+...|.|+|+||+|+|+.++.+|+++++++.+|++++.
T Consensus 446 ~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 446 NRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred HHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 678888877665432221111233457899999999997556799999999999998874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 526 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i 605 (708)
T TIGR01193 526 ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605 (708)
T ss_pred CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEe
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++||||++++|++||||||||+||+.+.+.+.+.|+++ +++|+|+||||++.+..||||++|++|
T Consensus 606 ~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHG 684 (708)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999986 567999999999988889999999999
Q ss_pred EEEEecCceee
Q psy18009 136 EIVERGSLFVS 146 (277)
Q Consensus 136 ~iv~~g~~~~~ 146 (277)
++++.|++...
T Consensus 685 ~i~~~G~~~~L 695 (708)
T TIGR01193 685 KIIEQGSHDEL 695 (708)
T ss_pred EEEEECCHHHH
Confidence 99999987543
No 38
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=3.7e-26 Score=233.29 Aligned_cols=144 Identities=44% Similarity=0.673 Sum_probs=121.4
Q ss_pred CccHHHhhcccccccCCC----C-Cccc-cccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------
Q psy18009 1 MENMFDLLQETCDVIDIP----Q-APML-CVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------ 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~----~-~~~~-~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------ 61 (277)
++|+.++++.+++..... . .... +...+.|+|+||+|+|++ .+.+|+++++++.+|++++.
T Consensus 443 ~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl 522 (710)
T TIGR03796 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522 (710)
T ss_pred HHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 367888888776543221 0 0111 223578999999999975 46799999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 523 klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 523 KLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCc
Confidence
Q ss_pred -------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCce
Q psy18009 62 -------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADE 128 (277)
Q Consensus 62 -------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Dr 128 (277)
||||||||++|||||+++|++||||||||+||+.+.+.+++.+++ .++|+|+||||++.+..|||
T Consensus 603 ~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~ 680 (710)
T TIGR03796 603 GGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDE 680 (710)
T ss_pred CcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCE
Confidence 999999999999999999999999999999999999999999987 46799999999999988999
Q ss_pred EEEeeCcEEEEecCceee
Q psy18009 129 ILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 129 v~vL~dG~iv~~g~~~~~ 146 (277)
|++|++|++++.|++...
T Consensus 681 Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEEL 698 (710)
T ss_pred EEEEeCCEEEEecCHHHH
Confidence 999999999999987653
No 39
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=5.6e-26 Score=227.46 Aligned_cols=142 Identities=42% Similarity=0.632 Sum_probs=122.4
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+|+.++++.+++..... ..+...+.|+|+|++|+|+.+.++|+++++++.+|++++.
T Consensus 316 ~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 316 ERVFELMDGPRQQYGND---DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred HHHHHHhcCCCccCCCC---ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 57788887654422111 1122346799999999997556799999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 393 p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence
Q ss_pred ----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009 62 ----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 137 (277)
Q Consensus 62 ----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i 137 (277)
||||||||++|||||+++|++||||||||+||+++.+.+.+.++++.+++|+|+||||++.+..||+|++|++|++
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i 552 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQA 552 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999888899999999988888999999999999
Q ss_pred EEecCceee
Q psy18009 138 VERGSLFVS 146 (277)
Q Consensus 138 v~~g~~~~~ 146 (277)
++.|++...
T Consensus 553 ~~~G~~~~L 561 (592)
T PRK10790 553 VEQGTHQQL 561 (592)
T ss_pred EEEcCHHHH
Confidence 999987654
No 40
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.2e-26 Score=203.71 Aligned_cols=84 Identities=43% Similarity=0.659 Sum_probs=79.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc--eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~--tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||+|||||||||..+|++||||||||+||......+++++.+++++. |.|+|||++..+.. ||||+||++|+++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 99999999999999999999999999999999999999999999998753 88999999999997 9999999999999
Q ss_pred EecCcee
Q psy18009 139 ERGSLFV 145 (277)
Q Consensus 139 ~~g~~~~ 145 (277)
+.++...
T Consensus 222 E~~~~~~ 228 (252)
T COG1124 222 EIGPTEE 228 (252)
T ss_pred Eeechhh
Confidence 9877543
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3e-26 Score=206.07 Aligned_cols=100 Identities=37% Similarity=0.558 Sum_probs=87.3
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcch
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLST 122 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~e 122 (277)
+|+.+++.-..++.+..|||||||||+||.+|+++|++||||||||+||+..++.+.+++++|+++ .|+|++||++++
T Consensus 122 ~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 122 ALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 444455544455555559999999999999999999999999999999999999999999999875 388899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++.+|++.
T Consensus 202 ~~~~ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 202 VLEYADRVVVLDDGKILADGDPA 224 (235)
T ss_pred HHhhCCEEEEEECCEEeecCCHH
Confidence 997 9999999999999988753
No 42
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=7.1e-26 Score=230.50 Aligned_cols=141 Identities=40% Similarity=0.618 Sum_probs=120.2
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++.+... .......+.|+|+||+|+|++ .+.+|+++++++.+|++++.
T Consensus 426 ~ri~~~l~~~~e~~~~~--~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 426 ERAKPILEALPEVDEAK--TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred HHHHHHhcCCcccccCc--CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57788887766543211 111123567999999999964 46799999999999999864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 504 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence
Q ss_pred -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
||||||||++|||||+++|++||||||||+||+.+.+.+++.++++ ++|+|+||||++.+..||||++|++|+
T Consensus 584 e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987 469999999999988899999999999
Q ss_pred EEEecCceee
Q psy18009 137 IVERGSLFVS 146 (277)
Q Consensus 137 iv~~g~~~~~ 146 (277)
+++.|++...
T Consensus 662 iv~~G~~~~L 671 (686)
T TIGR03797 662 VVQQGTYDEL 671 (686)
T ss_pred EEEECCHHHH
Confidence 9999987543
No 43
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=3.2e-26 Score=205.77 Aligned_cols=100 Identities=35% Similarity=0.529 Sum_probs=86.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||||||.+||||+.+|++|+|||||++|||-++..+.+.+.++.+ +.|+|++||+++|... +|||.+|++|+++
T Consensus 136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence 999999999999999999999999999999999999999999999976 4688899999999987 9999999999999
Q ss_pred EecCceeeehhcCCCCCchhHHHHHHhcc
Q psy18009 139 ERGSLFVSLLQVGQSGAGKSTIIRLLFRF 167 (277)
Q Consensus 139 ~~g~~~~~~~~~G~~GsGkttL~~~l~Gl 167 (277)
..+++.....+. ++++.+.++|.
T Consensus 216 Q~~~P~~il~~P------an~FV~~f~g~ 238 (309)
T COG1125 216 QYDTPDEILANP------ANDFVEDFFGE 238 (309)
T ss_pred EeCCHHHHHhCc------cHHHHHHHhcc
Confidence 988876544321 34555555554
No 44
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=9.2e-26 Score=225.67 Aligned_cols=144 Identities=34% Similarity=0.564 Sum_probs=124.0
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++.++.+... ..+..+.|+|+||+|+|++. +.+|+++++++.+|+.++.
T Consensus 312 ~ri~~ll~~~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCcccC-CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68888988876643221111 12235679999999999753 5699999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vg 470 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLG 470 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhc
Confidence
Q ss_pred -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
||||||||++||||++++|++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|+
T Consensus 471 e~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999987889999999999988899999999999
Q ss_pred EEEecCceee
Q psy18009 137 IVERGSLFVS 146 (277)
Q Consensus 137 iv~~g~~~~~ 146 (277)
+++.|++.+.
T Consensus 551 i~~~g~~~~l 560 (574)
T PRK11160 551 IIEQGTHQEL 560 (574)
T ss_pred EEEeCCHHHH
Confidence 9999987543
No 45
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=1.5e-25 Score=224.32 Aligned_cols=144 Identities=51% Similarity=0.741 Sum_probs=120.7
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+++.++++.+++.++.+.........+.|+|+||+|+|+..+.+|+++++++.+|+.++.
T Consensus 307 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 307 EEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred HHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 466777776554332221111112345799999999997545699999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 387 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~ 466 (588)
T PRK13657 387 PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVG 466 (588)
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence
Q ss_pred -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
||||||||++|||||+++|++||||||||+||+.+.+.+++.++++.+++|+|+||||++.+..||||++|++|+
T Consensus 467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999877889999999998887899999999999
Q ss_pred EEEecCcee
Q psy18009 137 IVERGSLFV 145 (277)
Q Consensus 137 iv~~g~~~~ 145 (277)
+++.|++..
T Consensus 547 i~~~g~~~~ 555 (588)
T PRK13657 547 VVESGSFDE 555 (588)
T ss_pred EEEeCCHHH
Confidence 999888654
No 46
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=223.88 Aligned_cols=143 Identities=52% Similarity=0.782 Sum_probs=121.5
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++..... ....+..+.|+|+||+|+|++ +..+|+++++++++|++++.
T Consensus 316 ~ri~~~~~~~~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 316 QTLFAILDLEQEKDEGK--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred HHHHHHhcCCCcCCCCC--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57777777654422111 111223467999999999975 36799999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 394 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ 473 (582)
T PRK11176 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473 (582)
T ss_pred CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||++|||||+++|++||||||||+||+.+...+++.+.++.+++|+|+|||+++.+..||+|++|++
T Consensus 474 ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVED 553 (582)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999888899999999988878999999999
Q ss_pred cEEEEecCceee
Q psy18009 135 GEIVERGSLFVS 146 (277)
Q Consensus 135 G~iv~~g~~~~~ 146 (277)
|++++.|++...
T Consensus 554 g~i~e~g~~~~l 565 (582)
T PRK11176 554 GEIVERGTHAEL 565 (582)
T ss_pred CEEEEeCCHHHH
Confidence 999999987543
No 47
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=1.1e-25 Score=230.19 Aligned_cols=142 Identities=44% Similarity=0.682 Sum_probs=118.9
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+|++++++.+++..... ....++..+.|+|+||+|+|++ ++.+|+++++++.+|++++.
T Consensus 452 ~ri~~~l~~~~~~~~~~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 452 EKVFEYLDRKPNIPLTG-TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred HHHHHHhCCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 67888888876643221 1111234578999999999974 35799999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 531 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||++||||++++|+|||||||||+||+++.+.+.+ ....+++|+|+||||++.+..||+|++|++
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999988 223356799999999998888999999999
Q ss_pred cEEEEecCceee
Q psy18009 135 GEIVERGSLFVS 146 (277)
Q Consensus 135 G~iv~~g~~~~~ 146 (277)
|++++.|++.+.
T Consensus 689 G~ive~Gt~~eL 700 (711)
T TIGR00958 689 GSVVEMGTHKQL 700 (711)
T ss_pred CEEEEeeCHHHH
Confidence 999999987653
No 48
>KOG0054|consensus
Probab=99.93 E-value=1.8e-25 Score=237.79 Aligned_cols=148 Identities=32% Similarity=0.563 Sum_probs=131.3
Q ss_pred CccHHHhhccccc---ccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec---------------
Q psy18009 1 MENMFDLLQETCD---VIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL--------------- 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~--------------- 61 (277)
+|||.+-.+.++| ..+...+|+.||..|.|+|+|++.+|.++ ..+|+++++.+.|+++|+.
T Consensus 1107 VERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1107 VERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred hhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence 4677777664444 22222256779999999999999999865 7799999999999999985
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1187 FRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1187 FRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred HHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence
Q ss_pred ---------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009 62 ---------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 62 ---------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
+|.||||.+|+||||+++++||+|||+||++|+++...+.+.|++-.+++|+|.|.||++.+.+||||+||
T Consensus 1267 ~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVl 1346 (1381)
T KOG0054|consen 1267 SEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVL 1346 (1381)
T ss_pred ceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcEEEEecCceeeeh
Q psy18009 133 HAGEIVERGSLFVSLL 148 (277)
Q Consensus 133 ~dG~iv~~g~~~~~~~ 148 (277)
++|++++.|++.....
T Consensus 1347 d~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1347 DAGRVVEFDSPAELLS 1362 (1381)
T ss_pred eCCeEeecCChHHHHh
Confidence 9999999998865443
No 49
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=3.9e-25 Score=226.28 Aligned_cols=93 Identities=33% Similarity=0.483 Sum_probs=85.1
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.+|..+||. ...++++..|||||||||+||+||+.+|++|||||||++||+.+.+.+.+.|+++ ++|+|+|||++++
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~ 403 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREF 403 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 467788885 3467789999999999999999999999999999999999999999999999987 5689999999999
Q ss_pred hcc-CceEEEeeCcEEE
Q psy18009 123 IIH-ADEILVMHAGEIV 138 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv 138 (277)
+.. ||++++|++|++.
T Consensus 404 l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 404 LNTVVTDILHLHGQKLV 420 (718)
T ss_pred HHHhCCEEEEEECCEEE
Confidence 987 9999999999985
No 50
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=3e-25 Score=201.33 Aligned_cols=114 Identities=32% Similarity=0.452 Sum_probs=95.6
Q ss_pred hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchh
Q psy18009 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTI 123 (277)
Q Consensus 46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev 123 (277)
|+.+++....++.+..|||||||||.|||||+++|++|+|||||+.||....-+++++++++.+ +.|+|++.|+++..
T Consensus 123 L~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A 202 (258)
T COG1120 123 LELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA 202 (258)
T ss_pred HHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 4444444444444444999999999999999999999999999999999999999999999974 35888899999998
Q ss_pred cc-CceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccc
Q psy18009 124 IH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFY 168 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~ 168 (277)
.. ||++++|++|++++.|++...+. .+.++.+||..
T Consensus 203 ~ryad~~i~lk~G~i~a~G~p~evlT---------~e~l~~Vygv~ 239 (258)
T COG1120 203 ARYADHLILLKDGKIVAQGTPEEVLT---------EENLREVYGVD 239 (258)
T ss_pred HHhCCEEEEEECCeEEeecCcchhcC---------HHHHHHHhCCc
Confidence 86 99999999999999999765443 35777888874
No 51
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=3.8e-25 Score=225.55 Aligned_cols=145 Identities=38% Similarity=0.648 Sum_probs=123.3
Q ss_pred CccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------------
Q psy18009 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
++|+.++++.+++.+.. .........+.|+|+||+|+|++ .+.+|+++++++.+|++++.
T Consensus 428 ~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 428 LERLGDILNSPTEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred HHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36788888877654321 11111223577999999999974 35699999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 507 ~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~ 586 (694)
T TIGR01846 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE 586 (694)
T ss_pred CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||++||||++++|++||||||||+||+.+.+.+.+.++++.++.|+|+|||+++.+..||+|++|++
T Consensus 587 i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 587 VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999777899999999999888999999999
Q ss_pred cEEEEecCceee
Q psy18009 135 GEIVERGSLFVS 146 (277)
Q Consensus 135 G~iv~~g~~~~~ 146 (277)
|++++.|++...
T Consensus 667 G~i~~~g~~~~l 678 (694)
T TIGR01846 667 GQIAESGRHEEL 678 (694)
T ss_pred CEEEEeCCHHHH
Confidence 999999987543
No 52
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-25 Score=217.40 Aligned_cols=146 Identities=33% Similarity=0.540 Sum_probs=123.1
Q ss_pred ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+.++.+++.+.+..+.... ...+.....+..+|++|+|++++.++.++++++.+|++++.
T Consensus 292 d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 292 DKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 3566677777664432211 11222234556669999998877899999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ig 451 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIG 451 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhc
Confidence
Q ss_pred -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
|||||+|||++||||+++++++|||||||+||.++.+.+.+.|.++.++.|+|+||||+..+..+|+|+||++|+
T Consensus 452 e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceeee
Q psy18009 137 IVERGSLFVSL 147 (277)
Q Consensus 137 iv~~g~~~~~~ 147 (277)
+++.|.+....
T Consensus 532 l~~~g~~~~L~ 542 (559)
T COG4988 532 LVEQGTHEELS 542 (559)
T ss_pred eeccCCHHHHh
Confidence 99999876543
No 53
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=4.7e-25 Score=221.12 Aligned_cols=145 Identities=43% Similarity=0.679 Sum_probs=121.4
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+|+.++++.+++..+....+......+.|+|+|++|+|++...+++++++++.+|+.++.
T Consensus 307 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 307 EDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred HHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 567777776654332211111112346799999999997555689999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 387 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~ 466 (585)
T TIGR01192 387 PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466 (585)
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence
Q ss_pred -----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 -----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 -----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.++++.++.|+|+|||+++.+..||+|++|++|+
T Consensus 467 ~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999877789999999999987799999999999
Q ss_pred EEEecCceee
Q psy18009 137 IVERGSLFVS 146 (277)
Q Consensus 137 iv~~g~~~~~ 146 (277)
+++.|++...
T Consensus 547 i~~~g~~~~l 556 (585)
T TIGR01192 547 LIEKGSFQEL 556 (585)
T ss_pred EEEECCHHHH
Confidence 9998886543
No 54
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=5.4e-25 Score=240.02 Aligned_cols=145 Identities=27% Similarity=0.472 Sum_probs=126.6
Q ss_pred ccHHHhhcccccccCC-----------------CCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec--
Q psy18009 2 ENMFDLLQETCDVIDI-----------------PQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL-- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~-----------------~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~-- 61 (277)
+|+.++++.+++.... +..++.||..|.|+|+||+|+|++ ...+|++++|++.+|++++.
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEEC
Confidence 6778887666553211 012234778899999999999975 46799999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 1253 rSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred CCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCC
Confidence
Q ss_pred ---------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 62 ---------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 62 ---------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++..+++|+|+|+||+
T Consensus 1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 89999999999999999999999999999999999999999999998889999999999
Q ss_pred chhccCceEEEeeCcEEEEecCceee
Q psy18009 121 STIIHADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~g~~~~~ 146 (277)
+.+..||||+||++|++++.|++...
T Consensus 1413 ~ti~~~DrIlvL~~G~ivE~g~p~~L 1438 (1490)
T TIGR01271 1413 EALLECQQFLVIEGSSVKQYDSIQKL 1438 (1490)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999987654
No 55
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.5e-25 Score=198.50 Aligned_cols=102 Identities=26% Similarity=0.486 Sum_probs=85.5
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev 123 (277)
+|+.+|+.-..++.++.|||||+|||.|||||+.+|++|+|||||+++|+..+..++++|+++++ ++|+++||||+..+
T Consensus 123 aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v 202 (254)
T COG1121 123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh
Confidence 34444444444444444999999999999999999999999999999999999999999999987 46888999999999
Q ss_pred cc-CceEEEeeCcEEEEecCceeee
Q psy18009 124 IH-ADEILVMHAGEIVERGSLFVSL 147 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~~~~ 147 (277)
.. +|+|+.| +++++..|++....
T Consensus 203 ~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 203 MAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HhhCCEEEEE-cCeeEeccChhhcc
Confidence 86 9999999 56677778765443
No 56
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3.7e-25 Score=197.39 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=80.4
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||++|++||||++.||++|++||||++|||.....+-++|+++++. .|+|+|||+++++.. |||+++|.||+++
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999874 589999999999997 9999999999999
Q ss_pred EecCceee
Q psy18009 139 ERGSLFVS 146 (277)
Q Consensus 139 ~~g~~~~~ 146 (277)
..|+..+.
T Consensus 226 ~~Gt~~el 233 (263)
T COG1127 226 AEGTPEEL 233 (263)
T ss_pred EeCCHHHH
Confidence 99987543
No 57
>KOG0057|consensus
Probab=99.92 E-value=5.2e-25 Score=214.28 Aligned_cols=121 Identities=48% Similarity=0.770 Sum_probs=114.3
Q ss_pred cCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------------------------------
Q psy18009 26 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------------------------------- 61 (277)
Q Consensus 26 ~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------------------------------- 61 (277)
-.+.|+|+||+|.|.+.+.+|+.+++++..|++|+.
T Consensus 348 ~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 467799999999998888899999999999999985
Q ss_pred ------------------------------------------------------------cCHHHHHHHHHHHHhccCCC
Q psy18009 62 ------------------------------------------------------------LSGGEKQRVAIARTLLKAPQ 81 (277)
Q Consensus 62 ------------------------------------------------------------LSgGqrQrv~IAral~~~p~ 81 (277)
|||||||||+||||+++||+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 99999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceee
Q psy18009 82 IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 82 ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~ 146 (277)
|++||||||+||.++...+++.+.....++|+|+|.|+++.+..||+|++|++|++.+.|++.+.
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHH
Confidence 99999999999999999999999997778899999999999999999999999999999987654
No 58
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=197.57 Aligned_cols=84 Identities=37% Similarity=0.577 Sum_probs=79.0
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||||||+|||||+++|++++-|||+|+|||.+.+.+++.|+++.+ +.|+|+.-|.++.+.. ||||+-|++|+++
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 999999999999999999999999999999999999999999999965 3588889999999986 9999999999999
Q ss_pred EecCcee
Q psy18009 139 ERGSLFV 145 (277)
Q Consensus 139 ~~g~~~~ 145 (277)
.+|+..+
T Consensus 228 fDg~~~e 234 (258)
T COG3638 228 FDGPASE 234 (258)
T ss_pred EeCChhh
Confidence 9998754
No 59
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=9.4e-25 Score=238.76 Aligned_cols=123 Identities=33% Similarity=0.545 Sum_probs=113.6
Q ss_pred ccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec------------------------------------------
Q psy18009 25 VAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------------------------------ 61 (277)
Q Consensus 25 ~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------------------------------ 61 (277)
+..|.|+|+||+|+|++. ..+|++++|++.+|++++.
T Consensus 1304 ~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred CCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 356889999999999764 4599999999999999874
Q ss_pred --------------------------------------------------------------cCHHHHHHHHHHHHhccC
Q psy18009 62 --------------------------------------------------------------LSGGEKQRVAIARTLLKA 79 (277)
Q Consensus 62 --------------------------------------------------------------LSgGqrQrv~IAral~~~ 79 (277)
||||||||++|||||+++
T Consensus 1384 ~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred hcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999995
Q ss_pred -CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceeee
Q psy18009 80 -PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSL 147 (277)
Q Consensus 80 -p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~~ 147 (277)
|+|||||||||+||+++.+.+.+.|++..+++|+|+|+||++.+..||+|+||++|++++.|++....
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 89999999999999999999999999988889999999999999999999999999999999876543
No 60
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.92 E-value=2e-24 Score=214.78 Aligned_cols=143 Identities=50% Similarity=0.737 Sum_probs=120.8
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++...... +. ....+.|+++||+|+|++ ++.+|+++++++.+|++++.
T Consensus 305 ~ri~~~l~~~~~~~~~~~-~~-~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 305 ESLFTLLDSPPEKDTGTR-AI-ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred HHHHHHHcCCCCCCCCCC-CC-CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 567777776655332211 11 123467999999999975 45699999999999998863
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 383 ~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~ 462 (571)
T TIGR02203 383 EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462 (571)
T ss_pred CCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccce
Confidence
Q ss_pred -------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 -------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 -------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||++||||++++|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+.+.+..||+|++|++
T Consensus 463 i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 8999999999999999999999999999999999999999999999888899999999988777999999999
Q ss_pred cEEEEecCceee
Q psy18009 135 GEIVERGSLFVS 146 (277)
Q Consensus 135 G~iv~~g~~~~~ 146 (277)
|++++.|++...
T Consensus 543 g~i~~~g~~~~l 554 (571)
T TIGR02203 543 GRIVERGTHNEL 554 (571)
T ss_pred CEEEeeCCHHHH
Confidence 999998886543
No 61
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=194.26 Aligned_cols=95 Identities=36% Similarity=0.533 Sum_probs=84.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ 121 (277)
+.|+.+|+.-..++++.+|||||||||+|||||+.+|++|+||||+++||+.++..+.+.+.++++. .|+++|||+++
T Consensus 113 ~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 4566777766677777779999999999999999999999999999999999999999999998753 69999999999
Q ss_pred hhcc-CceEEEeeC--cEEE
Q psy18009 122 TIIH-ADEILVMHA--GEIV 138 (277)
Q Consensus 122 ev~~-~Drv~vL~d--G~iv 138 (277)
|... +|||+||.+ |++.
T Consensus 193 EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 193 EAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHhhhCEEEEecCCCccee
Confidence 9986 999999998 4454
No 62
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.91 E-value=3.9e-24 Score=213.13 Aligned_cols=144 Identities=44% Similarity=0.702 Sum_probs=120.7
Q ss_pred ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCch--HHhhcccCcccccCCeeec-----------------
Q psy18009 2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTPE--RAILKNISFTVPAGKTLAL----------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~~--~~vL~~l~l~i~~~~~v~~----------------- 61 (277)
+|+.++++.+++.+..... ...++..+.|+|+||+|+|+.. +.+|+++++++.+|++++.
T Consensus 309 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 309 ERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred HHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5788888776553221111 1112234579999999999742 5699999999999998863
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 389 l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred ccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence
Q ss_pred --------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009 62 --------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 62 --------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
||||||||++||||++++|++||||||||+||+.+.+.+++.++++.++.|+|+|||+++.+..||||++|+
T Consensus 469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~ 548 (576)
T TIGR02204 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548 (576)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999977789999999998887899999999
Q ss_pred CcEEEEecCcee
Q psy18009 134 AGEIVERGSLFV 145 (277)
Q Consensus 134 dG~iv~~g~~~~ 145 (277)
+|++++.|++..
T Consensus 549 ~g~~~~~g~~~~ 560 (576)
T TIGR02204 549 QGRIVAQGTHAE 560 (576)
T ss_pred CCEEEeeecHHH
Confidence 999999888654
No 63
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=4e-24 Score=212.34 Aligned_cols=140 Identities=32% Similarity=0.486 Sum_probs=118.7
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++..+.. ......+.|+++|++|+|+. ...+|+++++++++|+.++.
T Consensus 292 ~ri~~~l~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 292 KRLNELLANYPSRDPAM---PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred HHHHHHHhCCccccCCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57888887765533211 11123467999999999975 35799999999999998764
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 369 ~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-cCceEEEEecCcchhccCceEEEeeC
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||++||||++++|++|||||||++||+++.+.+.+.++++. ++.|+|+|||+++.+..||+|++|++
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999986 45799999999987767999999999
Q ss_pred cEEEEecCce
Q psy18009 135 GEIVERGSLF 144 (277)
Q Consensus 135 G~iv~~g~~~ 144 (277)
|++++.|++.
T Consensus 529 G~i~~~g~~~ 538 (544)
T TIGR01842 529 GRIARFGERD 538 (544)
T ss_pred CEEEeeCCHH
Confidence 9999988754
No 64
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=3.8e-24 Score=213.78 Aligned_cols=143 Identities=38% Similarity=0.567 Sum_probs=121.4
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|+.++++.+++...... ......+.|+|+|++|+|+. +..+|+++++++.+|+.++.
T Consensus 288 ~ri~~ll~~~~~~~~~~~--~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 288 SRIRAMLAEAPVVKDGSE--PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred HHHHHHHcCCCcccCCCC--CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 578888877655332111 11123467999999999975 35699999999999998763
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 366 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~ 445 (569)
T PRK10789 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445 (569)
T ss_pred CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCccccee
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.++.|+|+|||+++.+..||++++|++|
T Consensus 446 ~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G 525 (569)
T PRK10789 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525 (569)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988778999999999988789999999999
Q ss_pred EEEEecCceee
Q psy18009 136 EIVERGSLFVS 146 (277)
Q Consensus 136 ~iv~~g~~~~~ 146 (277)
++++.|++...
T Consensus 526 ~i~~~g~~~~l 536 (569)
T PRK10789 526 HIAQRGNHDQL 536 (569)
T ss_pred EEEEecCHHHH
Confidence 99999886543
No 65
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=2e-24 Score=234.82 Aligned_cols=86 Identities=47% Similarity=0.735 Sum_probs=79.4
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh--cCceEEEEecCcchhccCceEEEeeC----c
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHA----G 135 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~--~~~tiIiIsH~l~ev~~~Drv~vL~d----G 135 (277)
||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.++. ++.|+|+|+||++.+..||+|+||++ |
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G 1438 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTG 1438 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999985 46799999999999989999999999 8
Q ss_pred EEE-EecCceeee
Q psy18009 136 EIV-ERGSLFVSL 147 (277)
Q Consensus 136 ~iv-~~g~~~~~~ 147 (277)
+++ +.|++.+..
T Consensus 1439 ~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1439 SFVQAHGTHEELL 1451 (1466)
T ss_pred CEEEEecCHHHHH
Confidence 965 788876543
No 66
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.4e-24 Score=191.01 Aligned_cols=84 Identities=36% Similarity=0.519 Sum_probs=80.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~ 140 (277)
||||||||++|||||+.+|+||+||||||+|||.+...+-++|.+|+++-|+||+||.|....+ +|+...+-.|++++.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999999988999999999999987 999999999999998
Q ss_pred cCcee
Q psy18009 141 GSLFV 145 (277)
Q Consensus 141 g~~~~ 145 (277)
|+...
T Consensus 230 g~T~~ 234 (253)
T COG1117 230 GPTDK 234 (253)
T ss_pred cCHHh
Confidence 87543
No 67
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=1.1e-23 Score=195.99 Aligned_cols=100 Identities=26% Similarity=0.465 Sum_probs=86.4
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev 123 (277)
+++.+++.-..++++..||+|||||++||+||+.+|++|||||||++||+.++..++++|+++++ +.|+|++||+++++
T Consensus 122 ~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~ 201 (306)
T PRK13537 122 LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 34444444444455555999999999999999999999999999999999999999999999976 45888899999999
Q ss_pred cc-CceEEEeeCcEEEEecCce
Q psy18009 124 IH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
.. ||||++|++|+++..|+..
T Consensus 202 ~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 202 ERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHhCCEEEEEECCEEEEECCHH
Confidence 86 9999999999999988754
No 68
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.2e-23 Score=178.43 Aligned_cols=109 Identities=32% Similarity=0.534 Sum_probs=93.6
Q ss_pred EEEeeeeeeeCchHHhhcccCcccccCCeeec------------------------------------------------
Q psy18009 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------------------------------------ 61 (277)
Q Consensus 30 i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------------------------------------ 61 (277)
|+++|++++|++ ..++++++|++.+|+.++.
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 356777777743 3577777777777775542
Q ss_pred ---cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009 62 ---LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGE 136 (277)
Q Consensus 62 ---LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~ 136 (277)
||+||+||++||||++.+|++|||||||++||+..++.+.+.++++.+ +.|+|++||+++++.. |||+++|++|+
T Consensus 80 ~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 159 (163)
T cd03216 80 VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159 (163)
T ss_pred EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 5688899999999886 99999999999
Q ss_pred EEE
Q psy18009 137 IVE 139 (277)
Q Consensus 137 iv~ 139 (277)
+++
T Consensus 160 i~~ 162 (163)
T cd03216 160 VVG 162 (163)
T ss_pred EEe
Confidence 864
No 69
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.8e-24 Score=186.14 Aligned_cols=86 Identities=37% Similarity=0.597 Sum_probs=80.6
Q ss_pred ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
.||-|+||||+|||||+.+|++++|||||++||..+...+.+.+++++. +.++|+.||.|+|+.. ||||++|.+|+++
T Consensus 133 ~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 3999999999999999999999999999999999999999999999987 5688999999999996 9999999999999
Q ss_pred EecCceee
Q psy18009 139 ERGSLFVS 146 (277)
Q Consensus 139 ~~g~~~~~ 146 (277)
..|+....
T Consensus 213 ~~gs~~~l 220 (245)
T COG4555 213 LEGSIEAL 220 (245)
T ss_pred EcCCHHHH
Confidence 98886543
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1e-23 Score=182.48 Aligned_cols=80 Identities=33% Similarity=0.549 Sum_probs=74.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
|||||||||+||||++.+|++||-||||.+|||....++++++.++...| |+++.||+.+.+.. -.|++.|++|+++.
T Consensus 138 LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999999998755 67779999999986 88999999999986
Q ss_pred ec
Q psy18009 140 RG 141 (277)
Q Consensus 140 ~g 141 (277)
+.
T Consensus 218 d~ 219 (223)
T COG2884 218 DE 219 (223)
T ss_pred cc
Confidence 53
No 71
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=195.55 Aligned_cols=85 Identities=34% Similarity=0.501 Sum_probs=80.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~ 140 (277)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999999887899999999999987 999999999999999
Q ss_pred cCceee
Q psy18009 141 GSLFVS 146 (277)
Q Consensus 141 g~~~~~ 146 (277)
|++...
T Consensus 306 g~~~~l 311 (329)
T PRK14257 306 GETKTI 311 (329)
T ss_pred CCHHHH
Confidence 886543
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=190.03 Aligned_cols=101 Identities=29% Similarity=0.452 Sum_probs=91.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|+|++||++++
T Consensus 121 ~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 121 EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred HHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 456777777667778888999999999999999999999999999999999999999999999965 4688899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|++++.|+..
T Consensus 201 ~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 201 AAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHhCCEEEEEECCEEEEECCHH
Confidence 976 9999999999999887753
No 73
>KOG0054|consensus
Probab=99.90 E-value=5.7e-23 Score=218.78 Aligned_cols=136 Identities=32% Similarity=0.507 Sum_probs=110.4
Q ss_pred ccHHHhhcccccccCCCCC-ccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec-----------------
Q psy18009 2 ENMFDLLQETCDVIDIPQA-PMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL----------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~----------------- 61 (277)
+|+-+++..+.. +..... .+.......|+++|.+|++.+ ..+.|+++++++..|+.++.
T Consensus 491 ~Ri~~fl~~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054|consen 491 KRLKEFLLSEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred HHHHHHhcCccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 466666665522 221111 122233456999999999975 34589999999999998864
Q ss_pred --------------------------------------------------------------------------cCHHHH
Q psy18009 62 --------------------------------------------------------------------------LSGGEK 67 (277)
Q Consensus 62 --------------------------------------------------------------------------LSgGqr 67 (277)
||||||
T Consensus 570 Em~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 570 EMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred CcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009 68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV 138 (277)
Q Consensus 68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv 138 (277)
|||++|||+++|++|++||.|+|++|.+..+.+++- ++.+.+++|+|++||.++.+..||.|++|+||++.
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999998765 55556678999999999999999999999999995
No 74
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=2.1e-23 Score=206.20 Aligned_cols=129 Identities=36% Similarity=0.609 Sum_probs=108.0
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCch-HHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~-~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
+|++++++.+++..+....+ ....+.|+|+||+|+|++. +.+|+++++++.+|++++.
T Consensus 295 ~ri~~ll~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 295 EALFAVLDAPRPLAGKAPVT--AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred HHHHHHhCCCcccCCCcCCC--CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57888887543322111111 1123579999999999754 4799999999999998863
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 373 ~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEe
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
||||||||++||||++++|++||||||||+||+.+.+.+++.++++.+++|+|+|||+++.+..||+|++|
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999999988778999999999998789999986
No 75
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=3.4e-23 Score=177.53 Aligned_cols=82 Identities=44% Similarity=0.626 Sum_probs=76.2
Q ss_pred eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV 138 (277)
Q Consensus 59 v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv 138 (277)
+..||+||+||++||||++.+|++|||||||++||+.+++.+++.|+++.++.|+|++||+++++..|||+++|++|+++
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~ 175 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKII 175 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 45599999999999999999999999999999999999999999999987667888999999998669999999999997
Q ss_pred Ee
Q psy18009 139 ER 140 (277)
Q Consensus 139 ~~ 140 (277)
+.
T Consensus 176 ~~ 177 (178)
T cd03247 176 MQ 177 (178)
T ss_pred ec
Confidence 64
No 76
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=5.3e-23 Score=179.98 Aligned_cols=84 Identities=43% Similarity=0.610 Sum_probs=77.3
Q ss_pred eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEE
Q psy18009 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV 138 (277)
Q Consensus 59 v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv 138 (277)
+..||+||+||++||||++.+|++|||||||++||+...+.+.+.|+++.++.|+|++||+++++..||++++|++|+++
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 34499999999999999999999999999999999999999999999987667889999999998679999999999998
Q ss_pred EecC
Q psy18009 139 ERGS 142 (277)
Q Consensus 139 ~~g~ 142 (277)
..|+
T Consensus 203 ~~g~ 206 (207)
T cd03369 203 EYDH 206 (207)
T ss_pred ecCC
Confidence 7654
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=197.52 Aligned_cols=102 Identities=26% Similarity=0.442 Sum_probs=93.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 117 ~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 117 EAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467778887778888899999999999999999999999999999999999999999999999865 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. |||+++|++|+++..|+...
T Consensus 197 ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 197 EAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 9986 99999999999999887654
No 78
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=3e-23 Score=190.57 Aligned_cols=85 Identities=31% Similarity=0.477 Sum_probs=80.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g 141 (277)
||+|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++..++|+|+|||+++++..||||++|++|++++.|
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g 218 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYD 218 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecC
Confidence 99999999999999999999999999999999999999999999987777999999999988779999999999999998
Q ss_pred Cceee
Q psy18009 142 SLFVS 146 (277)
Q Consensus 142 ~~~~~ 146 (277)
++...
T Consensus 219 ~~~~l 223 (275)
T cd03289 219 SIQKL 223 (275)
T ss_pred CHHHH
Confidence 87543
No 79
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.90 E-value=4.3e-23 Score=205.23 Aligned_cols=138 Identities=28% Similarity=0.398 Sum_probs=112.0
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec--------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL-------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~-------------------- 61 (277)
+|++++++.+++.+ .+.... .+..+.|+|+|++|+|++...+|+++++++++|++++.
T Consensus 297 ~ri~~l~~~~~~~~-~~~~~~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 297 NKLNKLALAPYKAE-FPRPQA-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred HHHHHHhccccccc-cccccc-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56777765443221 111111 11235799999999997555699999999999998763
Q ss_pred ---------------------------------------------------------------------------cCHHH
Q psy18009 62 ---------------------------------------------------------------------------LSGGE 66 (277)
Q Consensus 62 ---------------------------------------------------------------------------LSgGq 66 (277)
|||||
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq 454 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQ 454 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHH
Confidence 89999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh--cCceEEEEecCcchhccCceEEEeeCcEEEEec
Q psy18009 67 KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141 (277)
Q Consensus 67 rQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~--~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g 141 (277)
|||++||||++++|++||||||||+||+++.+.+.+.+.++. .++|+|+|||+++.+..||+|++|++|++++..
T Consensus 455 ~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 455 KKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999987653 357999999999877779999999999998753
No 80
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=3.1e-23 Score=195.75 Aligned_cols=84 Identities=32% Similarity=0.556 Sum_probs=78.8
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
||+|||||++||+||+.+|++|||||||++||+..+..++++|+++++ +.|+|++||+++++.. ||||++|++|+++.
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999975 4688889999999986 99999999999999
Q ss_pred ecCcee
Q psy18009 140 RGSLFV 145 (277)
Q Consensus 140 ~g~~~~ 145 (277)
.|+...
T Consensus 253 ~g~~~~ 258 (340)
T PRK13536 253 EGRPHA 258 (340)
T ss_pred EcCHHH
Confidence 887543
No 81
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.5e-23 Score=189.55 Aligned_cols=101 Identities=31% Similarity=0.417 Sum_probs=91.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|++||+++
T Consensus 124 ~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 356777777667778888999999999999999999999999999999999999999999999965 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|++++.|+..
T Consensus 204 ~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9985 9999999999999888754
No 82
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.89 E-value=4.8e-23 Score=177.05 Aligned_cols=116 Identities=31% Similarity=0.527 Sum_probs=97.4
Q ss_pred ccCceEEEeeeeeee-Cch---------HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCH
Q psy18009 25 VAQGAVEFRNVSFSY-TPE---------RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDT 94 (277)
Q Consensus 25 ~~~g~i~~~nvsf~Y-~~~---------~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~ 94 (277)
+..|.|.+++..... ... ..+++.+++....++.+..||+|||||++||||++.+|+++||||||++||+
T Consensus 51 ~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 51 PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 457888887654321 100 1157788887667888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEEEe
Q psy18009 95 KTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 95 ~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~ 140 (277)
.+++.+.+.|+++++ +.|+|++||+++++.. |||+++|++|+++..
T Consensus 131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999866 4688899999999976 999999999998754
No 83
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=8.2e-23 Score=203.70 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHH-HHHh-cCceEEEEecCcchhccCceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVC-ASRTTIIVAHRLSTIIHADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l-~~l~-~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~ 139 (277)
||||||||++||||++.+|++||||||||+||+++.+.+++.+ +.++ +++|+|+|||+++.+..||+|++|++|++++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 8999999999999999999999999999999999999998865 4454 4679999999998777799999999999986
Q ss_pred e
Q psy18009 140 R 140 (277)
Q Consensus 140 ~ 140 (277)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 4
No 84
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=3.6e-23 Score=195.56 Aligned_cols=102 Identities=34% Similarity=0.526 Sum_probs=94.6
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|+|||+++
T Consensus 123 e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 123 ELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 568899998888999999999999999999999999999999999999999999999999999965 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
.+.. |||+++|++|++++.|+...
T Consensus 203 ~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 203 VVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9986 99999999999999887543
No 85
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.1e-23 Score=181.28 Aligned_cols=98 Identities=38% Similarity=0.545 Sum_probs=89.5
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 468888887777888999999999999999999999999999999999999999999999999864 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEec
Q psy18009 122 TIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g 141 (277)
++.. |||+++|++|+++..|
T Consensus 193 ~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 193 EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 9986 9999999999997653
No 86
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.1e-23 Score=183.42 Aligned_cols=100 Identities=35% Similarity=0.477 Sum_probs=91.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++....++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 468888987677889999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. |||+++|++|+++..|+.
T Consensus 199 ~~~~~~d~v~~l~~G~i~~~g~~ 221 (235)
T cd03261 199 TAFAIADRIAVLYDGKIVAEGTP 221 (235)
T ss_pred HHHHhcCEEEEEECCeEEEecCH
Confidence 9986 999999999999987764
No 87
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=8.7e-23 Score=174.40 Aligned_cols=76 Identities=43% Similarity=0.717 Sum_probs=71.0
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeCcEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHAGEI 137 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~dG~i 137 (277)
||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++++..||++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 899999999999999999999999999999999999999999999865 4588889999998856999999999964
No 88
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=180.77 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=86.5
Q ss_pred hccc-CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009 46 LKNI-SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 123 (277)
Q Consensus 46 L~~l-~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev 123 (277)
++.+ ++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++++
T Consensus 121 l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (237)
T PRK11614 121 YELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA 200 (237)
T ss_pred HHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 4444 344345567778999999999999999999999999999999999999999999999865 56888899999999
Q ss_pred cc-CceEEEeeCcEEEEecCce
Q psy18009 124 IH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
.. |||+++|++|+++..|+..
T Consensus 201 ~~~~d~i~~l~~G~i~~~~~~~ 222 (237)
T PRK11614 201 LKLADRGYVLENGHVVLEDTGD 222 (237)
T ss_pred HhhCCEEEEEeCCEEEeeCCHH
Confidence 86 9999999999999887754
No 89
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=7.1e-23 Score=182.62 Aligned_cols=96 Identities=34% Similarity=0.514 Sum_probs=85.8
Q ss_pred HHhhcccCcccccC-CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFTVPAG-KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~i~~~-~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
..+++.+|+.-... .++..|||||||||+|||||+.+|++|+.||||++||.++.+.++++++++.+ +.|+|++||+
T Consensus 123 ~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 34677788875555 88999999999999999999999999999999999999999999999999965 3488889999
Q ss_pred cchhccCceEEEeeCcEEE
Q psy18009 120 LSTIIHADEILVMHAGEIV 138 (277)
Q Consensus 120 l~ev~~~Drv~vL~dG~iv 138 (277)
..-...|||++.|+||++.
T Consensus 203 ~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 203 PELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHhCCEEEEEeCCeee
Confidence 8888889999999999843
No 90
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.2e-22 Score=178.37 Aligned_cols=88 Identities=53% Similarity=0.792 Sum_probs=80.5
Q ss_pred CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
+..+..||+||||||+|||||+.+|++|||||||++||+.+++.+++.++++.++.|+|++||+++++..||++++|++|
T Consensus 134 ~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 44567899999999999999999999999999999999999999999999997666888999999998669999999999
Q ss_pred EEEEecCc
Q psy18009 136 EIVERGSL 143 (277)
Q Consensus 136 ~iv~~g~~ 143 (277)
+++..++.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 99876653
No 91
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=1.2e-22 Score=200.92 Aligned_cols=119 Identities=33% Similarity=0.534 Sum_probs=99.8
Q ss_pred ccHHHhhcccccccCCCC--CccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQ--APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+|+.++++.+++..+... ....++..+.|+|+||+|+|++.+.+|+++++++.+|++++.
T Consensus 305 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 305 ERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred HHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 578888877765332111 111222346799999999997655699999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 385 ~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i 464 (529)
T TIGR02868 385 LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVL 464 (529)
T ss_pred CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchh
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
||||||||++||||++++|++||||||||+||+++.+.+++.+.++.+++|+|+||||+
T Consensus 465 ge~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 465 GEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999988888999999985
No 92
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=9.3e-23 Score=188.88 Aligned_cols=103 Identities=31% Similarity=0.514 Sum_probs=94.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc--eEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~--tiIiIsH~l 120 (277)
.++|+.+++....++++..||+|||||+.||.||+.+|++|||||||++|||..+..+.++|+++++.+ |++++||.+
T Consensus 118 ~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 118 EELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred HHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 358999999876688999999999999999999999999999999999999999999999999998753 888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. ||||++|++|+++..|+...
T Consensus 198 ~e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 198 EEAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99997 99999999999999886543
No 93
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=9.8e-23 Score=178.63 Aligned_cols=99 Identities=27% Similarity=0.501 Sum_probs=90.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred HHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 34688888876678889999999999999999999999999999999999999999999999999877788899999999
Q ss_pred hcc-CceEEEeeCcEEEEec
Q psy18009 123 IIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g 141 (277)
+.. |||+++|++|+++..|
T Consensus 192 ~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 192 VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhCCEEEEEECCEEEecC
Confidence 986 9999999999998653
No 94
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=1e-22 Score=188.74 Aligned_cols=102 Identities=25% Similarity=0.467 Sum_probs=93.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++|+.+++.-..++++..|||||||||+||+||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 106 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred HHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 3578899998778999999999999999999999999999999999999999999999999999975 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 186 ~~~~~~d~v~~l~~G~i~~~g~~~ 209 (302)
T TIGR01188 186 EADKLCDRIAIIDHGRIIAEGTPE 209 (302)
T ss_pred HHHHhCCEEEEEECCEEEEECCHH
Confidence 9986 9999999999999887653
No 95
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.4e-22 Score=180.76 Aligned_cols=100 Identities=34% Similarity=0.517 Sum_probs=91.9
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++....++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 127 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred HHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468889998777889999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. ||++++|++|+++..++.
T Consensus 207 ~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 207 LAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHhCCEEEEEECCEEEeecCH
Confidence 9985 999999999999887664
No 96
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=2.9e-22 Score=176.70 Aligned_cols=87 Identities=39% Similarity=0.570 Sum_probs=80.8
Q ss_pred CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
++.+..||+|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++++..||++++|++|
T Consensus 134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (221)
T cd03244 134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213 (221)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 45778899999999999999999999999999999999999999999999987667889999999998779999999999
Q ss_pred EEEEecC
Q psy18009 136 EIVERGS 142 (277)
Q Consensus 136 ~iv~~g~ 142 (277)
+++..++
T Consensus 214 ~~~~~~~ 220 (221)
T cd03244 214 RVVEFDS 220 (221)
T ss_pred eEEecCC
Confidence 9987654
No 97
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=1.4e-22 Score=177.14 Aligned_cols=96 Identities=30% Similarity=0.536 Sum_probs=88.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.++|++||+++
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4578889998778889999999999999999999999999999999999999999999999999854 468889999999
Q ss_pred hhcc-CceEEEeeCcEEE
Q psy18009 122 TIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv 138 (277)
++.. ||++++|++|+++
T Consensus 188 ~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 188 FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCEEEEEECCEEC
Confidence 9986 9999999999874
No 98
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=6.2e-23 Score=189.27 Aligned_cols=104 Identities=36% Similarity=0.474 Sum_probs=97.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++|+.+||.-..+.++.+|||||||||.|||||+.+|+||+||||+|+|||--+.++.+.|.+|.+ ++|+|+|||+|
T Consensus 146 ~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL 225 (386)
T COG4175 146 LEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL 225 (386)
T ss_pred HHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 4679999999999999999999999999999999999999999999999999999999999999865 47999999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCceee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
+|... .|||.+|+||+++..|++.+.
T Consensus 226 dEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 226 DEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHhccceEEEecCCeEEEeCCHHHH
Confidence 99987 999999999999999986543
No 99
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.88 E-value=1.1e-22 Score=178.99 Aligned_cols=95 Identities=29% Similarity=0.475 Sum_probs=87.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 120 SAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3468889998777889999999999999999999999999999999999999999999999999865 468888999999
Q ss_pred hhcc-CceEEEeeCcEE
Q psy18009 122 TIIH-ADEILVMHAGEI 137 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~i 137 (277)
++.. ||++++|++|++
T Consensus 200 ~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 200 LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhCCEEEEEeCCcC
Confidence 9986 999999999974
No 100
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=1.9e-22 Score=179.46 Aligned_cols=101 Identities=24% Similarity=0.498 Sum_probs=92.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++ +.|+|++||+++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 204 (236)
T cd03219 125 EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD 204 (236)
T ss_pred HHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 3568888887777889999999999999999999999999999999999999999999999999874 568889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. ||++++|++|+++..++.
T Consensus 205 ~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 205 VVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHhCCEEEEEeCCEEEeecCH
Confidence 9986 999999999999887654
No 101
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.8e-22 Score=170.99 Aligned_cols=75 Identities=56% Similarity=0.830 Sum_probs=71.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
||+|||||++||||++.+|++|||||||++||+.+++.+.++++++.++.++|++||+++++..||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999976678889999999986799999999984
No 102
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.7e-22 Score=173.32 Aligned_cols=81 Identities=31% Similarity=0.470 Sum_probs=74.2
Q ss_pred ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch-hcc-CceEEEeeC-cE
Q psy18009 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST-IIH-ADEILVMHA-GE 136 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e-v~~-~Drv~vL~d-G~ 136 (277)
.||+||+||++||||++.+|++|||||||++||+.+++.+++.++++++ +.|+|++||++++ +.. |||+++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 5999999999999999999999999999999999999999999999875 4688889999984 655 999999999 99
Q ss_pred EEEec
Q psy18009 137 IVERG 141 (277)
Q Consensus 137 iv~~g 141 (277)
+++.|
T Consensus 188 i~~~g 192 (192)
T cd03232 188 TVYFG 192 (192)
T ss_pred EEeCC
Confidence 98754
No 103
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.9e-22 Score=178.06 Aligned_cols=100 Identities=33% Similarity=0.510 Sum_probs=90.4
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|++||+++
T Consensus 114 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 114 ELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred HHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 467888887667888999999999999999999999999999999999999999999999999853 468889999999
Q ss_pred hhcc-CceEEEee--CcEEEEecCc
Q psy18009 122 TIIH-ADEILVMH--AGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~--dG~iv~~g~~ 143 (277)
++.. ||++++|+ +|++++.++.
T Consensus 194 ~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 194 EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9886 99999999 7999876654
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=2.2e-22 Score=178.31 Aligned_cols=100 Identities=31% Similarity=0.464 Sum_probs=89.9
Q ss_pred HhhcccCcccccCCe--eeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKT--LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~--v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
++++.+++.-...+. +..||||||||++|||||+.+|++|||||||++||+..++.+.+.|++++++.|+|++||+++
T Consensus 122 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 201 (227)
T cd03260 122 EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ 201 (227)
T ss_pred HHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHH
Confidence 468888886555555 599999999999999999999999999999999999999999999999976678888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. |||+++|++|+++..|+.
T Consensus 202 ~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 202 QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHhCCEEEEEeCCEEEEecCc
Confidence 9986 999999999999987764
No 105
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=1.8e-22 Score=177.06 Aligned_cols=98 Identities=33% Similarity=0.528 Sum_probs=90.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467888888778889999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEec
Q psy18009 122 TIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g 141 (277)
++.. ||++++|++|++++.|
T Consensus 193 ~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 193 EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHhcCeEEEEECCEEEecC
Confidence 9986 9999999999998754
No 106
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=187.39 Aligned_cols=103 Identities=24% Similarity=0.465 Sum_probs=93.6
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++++.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|+|||++
T Consensus 146 ~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 146 AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 4568889996 568899999999999999999999999999999999999999999999999999975 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. ||||++|++|+++..|+...
T Consensus 226 ~~~~~~adrv~vl~~G~i~~~g~~~~ 251 (305)
T PRK13651 226 DNVLEWTKRTIFFKDGKIIKDGDTYD 251 (305)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99986 99999999999998887543
No 107
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=2e-22 Score=191.86 Aligned_cols=102 Identities=37% Similarity=0.542 Sum_probs=94.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++|+.+++....++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.+.++.+ +.|+|++||++
T Consensus 111 ~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~ 190 (363)
T TIGR01186 111 LELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL 190 (363)
T ss_pred HHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3578899998888999999999999999999999999999999999999999999999999999864 46899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||||++|++|+++..|++.
T Consensus 191 ~ea~~~~drI~vl~~G~iv~~g~~~ 215 (363)
T TIGR01186 191 DEAIRIGDRIVIMKAGEIVQVGTPD 215 (363)
T ss_pred HHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99886 9999999999999888754
No 108
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=2.5e-22 Score=180.43 Aligned_cols=101 Identities=33% Similarity=0.444 Sum_probs=91.9
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. ...++.+..||||||||++|||||+.+|++|||||||++||+.++..++++|++++++.|+|++||+
T Consensus 123 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~ 202 (247)
T TIGR00972 123 ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHN 202 (247)
T ss_pred HHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecC
Confidence 467788886 4567889999999999999999999999999999999999999999999999999776788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..++..
T Consensus 203 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 203 MQQAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999986 9999999999999877653
No 109
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-22 Score=177.02 Aligned_cols=99 Identities=37% Similarity=0.494 Sum_probs=90.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||++
T Consensus 113 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 113 DELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 3478888987667889999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEec
Q psy18009 121 STIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g 141 (277)
+++.. ||++++|++|+++..|
T Consensus 193 ~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 193 SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHhcCEEEEEECCEEEecC
Confidence 99986 9999999999997653
No 110
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=8e-23 Score=178.35 Aligned_cols=103 Identities=26% Similarity=0.426 Sum_probs=88.2
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchh
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev 123 (277)
+|++|++.--.+.+...||||||+|++|||||+.+|++++||||+|++||-+...+.++++.|++.+ .++|..|+..|-
T Consensus 123 LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 4444444444444444599999999999999999999999999999999999999999999999876 677788999998
Q ss_pred cc-CceEEEeeCcEEEEecCceeee
Q psy18009 124 IH-ADEILVMHAGEIVERGSLFVSL 147 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~~~~ 147 (277)
.. |||.+++.+|++.+.|++....
T Consensus 203 L~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 203 LDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HhhhheEEEEecCeEEecCCHHHHh
Confidence 86 9999999999999999876543
No 111
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.2e-22 Score=179.89 Aligned_cols=101 Identities=37% Similarity=0.541 Sum_probs=92.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred HHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 468888887677888999999999999999999999999999999999999999999999999865 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 199 ~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 199 EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHhCCEEEEEECCeEEEecCHH
Confidence 9886 9999999999999877653
No 112
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2e-22 Score=189.24 Aligned_cols=103 Identities=34% Similarity=0.505 Sum_probs=89.5
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ 121 (277)
++.+.++++-..++++..|||||||||+|||||+++|++++||||+|+||++-+..+...|+++.+. .|+|++|||..
T Consensus 116 eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 3455555555555555669999999999999999999999999999999999999999999998764 58899999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCceee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
|++. +|||.||++|++...|++.+.
T Consensus 196 EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 196 EAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHhhCCEEEEEeCCeeeecCChHHH
Confidence 9996 999999999999998886543
No 113
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.5e-22 Score=176.06 Aligned_cols=98 Identities=28% Similarity=0.429 Sum_probs=89.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||++
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 110 EVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3578888998777889999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEe
Q psy18009 121 STIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~ 140 (277)
+++.. |||+++|++|+++..
T Consensus 190 ~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 190 EDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHHHhhhCEEEEEECCEEeec
Confidence 99986 999999999998764
No 114
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=2.1e-22 Score=179.57 Aligned_cols=101 Identities=34% Similarity=0.508 Sum_probs=91.9
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 97 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 97 EHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468888888777889999999999999999999999999999999999999999999999999864 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 177 ~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 177 EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHhcCEEEEEeCCcEecccCce
Confidence 9986 9999999999999877543
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.87 E-value=2.4e-22 Score=177.20 Aligned_cols=95 Identities=32% Similarity=0.505 Sum_probs=87.4
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++....++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++
T Consensus 124 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 568888987777889999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhccCceEEEeeCcEEE
Q psy18009 122 TIIHADEILVMHAGEIV 138 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv 138 (277)
++..||++++|++|+++
T Consensus 204 ~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 204 LAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhhcCEEEEEeCCEec
Confidence 88669999999999875
No 116
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=2.7e-22 Score=179.27 Aligned_cols=102 Identities=36% Similarity=0.503 Sum_probs=92.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++....++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 127 LSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3468888998777889999999999999999999999999999999999999999999999999854 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|+++..|+..
T Consensus 207 ~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 207 DLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHhcCeEEEEECCEEEecCCHH
Confidence 99976 9999999999999877643
No 117
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=3.8e-22 Score=197.68 Aligned_cols=93 Identities=33% Similarity=0.508 Sum_probs=85.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
..+|..++++.. .++++.||||||.||+||+||..+|++|+|||||+.||..+..-|-+.|.+.. +|+|+||||-+.
T Consensus 136 ~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--gtviiVSHDR~F 212 (530)
T COG0488 136 EEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--GTVIVVSHDRYF 212 (530)
T ss_pred HHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--CcEEEEeCCHHH
Confidence 567889999876 89999999999999999999999999999999999999999999999998653 499999999999
Q ss_pred hcc-CceEEEeeCcEEE
Q psy18009 123 IIH-ADEILVMHAGEIV 138 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv 138 (277)
+-. |++|+.++.|++.
T Consensus 213 Ld~V~t~I~~ld~g~l~ 229 (530)
T COG0488 213 LDNVATHILELDRGKLT 229 (530)
T ss_pred HHHHhhheEEecCCcee
Confidence 987 9999999999886
No 118
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=2.4e-22 Score=191.25 Aligned_cols=102 Identities=31% Similarity=0.448 Sum_probs=94.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---CceEEEEecCc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~~tiIiIsH~l 120 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 120 ~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 120 DALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 468889998888999999999999999999999999999999999999999999999999999865 34888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. ||||++|++|+++..|++..
T Consensus 200 ~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 200 DDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99986 99999999999999888654
No 119
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3e-22 Score=171.03 Aligned_cols=76 Identities=36% Similarity=0.619 Sum_probs=71.5
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEI 137 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~i 137 (277)
||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++ .|+|++||+.+++.. ||++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999998654 588889999999986 999999999964
No 120
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.87 E-value=2.7e-22 Score=176.68 Aligned_cols=100 Identities=32% Similarity=0.482 Sum_probs=92.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 123 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev 123 (277)
++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+...+.+.+.|++++++.|+|++||+++++
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 195 (220)
T cd03263 116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEA 195 (220)
T ss_pred HHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 46788888766788899999999999999999999999999999999999999999999999998777889999999999
Q ss_pred cc-CceEEEeeCcEEEEecCc
Q psy18009 124 IH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~ 143 (277)
.. ||++++|++|+++..++.
T Consensus 196 ~~~~d~i~~l~~g~i~~~~~~ 216 (220)
T cd03263 196 EALCDRIAIMSDGKLRCIGSP 216 (220)
T ss_pred HHhcCEEEEEECCEEEecCCH
Confidence 86 999999999999987654
No 121
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=3.4e-22 Score=178.67 Aligned_cols=102 Identities=26% Similarity=0.499 Sum_probs=93.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.++++.+++.-..++.+..||+||+|||+||||++.+|++|||||||++||+..++.+.+.|+++.++.|+|++||++++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 45688889887778899999999999999999999999999999999999999999999999999777799999999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..++..
T Consensus 205 ~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 205 VRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHhCCEEEEEECCeEEeeCCHH
Confidence 986 9999999999999877643
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.3e-22 Score=184.52 Aligned_cols=101 Identities=30% Similarity=0.500 Sum_probs=91.8
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++|+.+++. ...++++..||+||||||+|||||+.+|++|||||||++||+.+...++++++++.+ +.|+|++||++
T Consensus 127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 127 EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred HHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467888986 456889999999999999999999999999999999999999999999999999965 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||||++|++|+++..|+..
T Consensus 207 ~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 207 EDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHH
Confidence 99986 9999999999999887643
No 123
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3e-22 Score=176.75 Aligned_cols=101 Identities=24% Similarity=0.480 Sum_probs=91.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..||||||||++||||++.+|++|||||||++||+..++.+.+.|+++.+ +.++|++||++
T Consensus 113 ~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 113 DELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3568888987667888999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. |||+++|++|+++..++.
T Consensus 193 ~~~~~~~d~i~~l~~G~i~~~~~~ 216 (220)
T cd03265 193 EEAEQLCDRVAIIDHGRIIAEGTP 216 (220)
T ss_pred HHHHHhCCEEEEEeCCEEEEeCCh
Confidence 99986 999999999999877653
No 124
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.87 E-value=8.3e-22 Score=171.55 Aligned_cols=80 Identities=38% Similarity=0.588 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc-hhcc-CceEEEeeCcEE
Q psy18009 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS-TIIH-ADEILVMHAGEI 137 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~-ev~~-~Drv~vL~dG~i 137 (277)
.||+||+||++|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++||+++ ++.. |||+++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 6999999999999999999999999999999999999999999999865 568889999997 5665 999999999998
Q ss_pred EEe
Q psy18009 138 VER 140 (277)
Q Consensus 138 v~~ 140 (277)
+..
T Consensus 191 ~~~ 193 (194)
T cd03213 191 IYF 193 (194)
T ss_pred Eec
Confidence 764
No 125
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=2.9e-22 Score=175.89 Aligned_cols=96 Identities=30% Similarity=0.554 Sum_probs=86.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 114 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3578888998777889999999999999999999999999999999999999999999999999874 468888999999
Q ss_pred hhcc-CceEEEeeCcEEEE
Q psy18009 122 TIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~ 139 (277)
++.. |||+++|++| +++
T Consensus 194 ~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 194 LVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred HHHHhcCEEEEEcCc-Eee
Confidence 9986 9999999886 444
No 126
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=3e-22 Score=185.68 Aligned_cols=101 Identities=30% Similarity=0.504 Sum_probs=92.6
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||++++
T Consensus 118 ~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred HHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 467888887777889999999999999999999999999999999999999999999999999965 4588899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..|+..
T Consensus 198 ~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 198 AERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHhCCEEEEEECCEEEEEcCHH
Confidence 986 9999999999999887754
No 127
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=3.1e-22 Score=176.90 Aligned_cols=98 Identities=37% Similarity=0.554 Sum_probs=88.2
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||++
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 466778884 456888999999999999999999999999999999999999999999999999865 56888999999
Q ss_pred chhcc-CceEEEeeCcEEEEec
Q psy18009 121 STIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g 141 (277)
+++.. ||++++|++|+++..|
T Consensus 207 ~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 207 GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCeEEEEeCCEEEecC
Confidence 99985 9999999999987643
No 128
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=188.00 Aligned_cols=103 Identities=27% Similarity=0.386 Sum_probs=92.6
Q ss_pred HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009 43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs 117 (277)
.++|+.+++.- ..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+ +.|+|+||
T Consensus 137 ~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~it 216 (330)
T PRK15093 137 IELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS 216 (330)
T ss_pred HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35688888863 24788999999999999999999999999999999999999999999999999975 45888899
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
|+++++.. ||||++|.+|++++.|+...
T Consensus 217 Hdl~~v~~~~dri~vm~~G~ive~g~~~~ 245 (330)
T PRK15093 217 HDLQMLSQWADKINVLYCGQTVETAPSKE 245 (330)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999986 99999999999999887543
No 129
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.9e-22 Score=183.76 Aligned_cols=102 Identities=31% Similarity=0.477 Sum_probs=92.5
Q ss_pred HHhhcccCcc--cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 43 RAILKNISFT--VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 43 ~~vL~~l~l~--i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
.++|+.+++. -..++++..||||||||++|||||+.+|++|||||||++||+..+..++++|+++.+ +.|+|++||
T Consensus 124 ~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 124 KRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203 (287)
T ss_pred HHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3578888986 457888999999999999999999999999999999999999999999999999965 458889999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecCce
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++++.. ||||++|++|+++..|+..
T Consensus 204 d~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 204 SMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred CHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999976 9999999999999887754
No 130
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.87 E-value=4.4e-22 Score=165.90 Aligned_cols=104 Identities=38% Similarity=0.621 Sum_probs=90.6
Q ss_pred EEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------cCHHHHHHH
Q psy18009 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------------------LSGGEKQRV 70 (277)
Q Consensus 30 i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~---------------------------------------LSgGqrQrv 70 (277)
++++|++++|.. ..+++++++++.+|+.++. ||+||+||+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv 79 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRL 79 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHH
Confidence 357788887753 3577888888888876542 999999999
Q ss_pred HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009 71 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGE 136 (277)
Q Consensus 71 ~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~ 136 (277)
+|||||+.+|+++||||||++||+.++..+.+.++++ +.|+|++||+++++.. ||++++|++|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999987 3688899999999986 99999999985
No 131
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=2.6e-22 Score=175.56 Aligned_cols=99 Identities=31% Similarity=0.472 Sum_probs=90.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++....++++..||+||||||+||||++.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred HHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4567888887777888999999999999999999999999999999999999999999999999875 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEec
Q psy18009 122 TIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g 141 (277)
++.. ||++++|++|+++..|
T Consensus 188 ~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 188 EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 9986 9999999999987653
No 132
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=8.2e-22 Score=178.46 Aligned_cols=84 Identities=36% Similarity=0.535 Sum_probs=78.4
Q ss_pred ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 140 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~ 140 (277)
.||+||+||++|||||+.+|++|||||||++||+...+.+++.++++.++.|+|++||+++++..|||+++|++|+++..
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 49999999999999999999999999999999999999999999998777789999999999878999999999999987
Q ss_pred cCce
Q psy18009 141 GSLF 144 (277)
Q Consensus 141 g~~~ 144 (277)
|+..
T Consensus 236 g~~~ 239 (257)
T cd03288 236 DTPE 239 (257)
T ss_pred CCHH
Confidence 7643
No 133
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=3.4e-22 Score=188.04 Aligned_cols=102 Identities=30% Similarity=0.497 Sum_probs=92.4
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++|+.+++. -..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+ +.|+|+|||+
T Consensus 142 ~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 142 KAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3568888884 346888999999999999999999999999999999999999999999999999965 4588899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. ||||++|.+|++++.|+..
T Consensus 222 l~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 222 LAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999986 9999999999999988754
No 134
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=2.8e-22 Score=176.40 Aligned_cols=98 Identities=26% Similarity=0.486 Sum_probs=89.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred HHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3468888887777889999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEe
Q psy18009 122 TIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~ 140 (277)
++.. |||+++|++|+++..
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 198 EVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHhcCEEEEEECCEEeec
Confidence 9986 999999999998764
No 135
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=191.12 Aligned_cols=85 Identities=38% Similarity=0.553 Sum_probs=78.9
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||||||+|||||+.+|++|+||||.|+||.+-++.+..-++++.+ +.|.|++||+-+|... +|||.||++|+|.
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee
Confidence 999999999999999999999999999999999999999999999865 3488889999999987 9999999999999
Q ss_pred EecCceee
Q psy18009 139 ERGSLFVS 146 (277)
Q Consensus 139 ~~g~~~~~ 146 (277)
..|++.+.
T Consensus 217 Q~gtP~ei 224 (352)
T COG3842 217 QVGTPEEI 224 (352)
T ss_pred ecCCHHHH
Confidence 98886543
No 136
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=3.8e-22 Score=177.11 Aligned_cols=100 Identities=26% Similarity=0.454 Sum_probs=91.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++++
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 116 ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567888888778889999999999999999999999999999999999999999999999999875 4588889999999
Q ss_pred hcc-CceEEEeeCcEEEEecCc
Q psy18009 123 IIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+.. |||+++|++|+++..++.
T Consensus 196 ~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 196 TLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHhCCEEEEEECCeEEEEeCH
Confidence 986 999999999999887654
No 137
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.5e-22 Score=187.50 Aligned_cols=103 Identities=29% Similarity=0.421 Sum_probs=92.4
Q ss_pred HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009 43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs 117 (277)
.++|+.+++.- ..++++..|||||||||+|||||+.+|++||+||||++||+..+..++++|+++++ +.|+|+||
T Consensus 132 ~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT 211 (326)
T PRK11022 132 IDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT 211 (326)
T ss_pred HHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35688889852 35788999999999999999999999999999999999999999999999999975 45888899
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
|+++++.. ||||+||.+|++++.|+...
T Consensus 212 Hdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 212 HDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999976 99999999999999887543
No 138
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.2e-22 Score=183.43 Aligned_cols=102 Identities=28% Similarity=0.462 Sum_probs=92.5
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++++.+++. ...++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++
T Consensus 126 ~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 126 LKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred HHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3468888986 567889999999999999999999999999999999999999999999999999975 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 206 ~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 206 DDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887654
No 139
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.87 E-value=8e-22 Score=172.27 Aligned_cols=84 Identities=31% Similarity=0.512 Sum_probs=77.8
Q ss_pred eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhc--cCceEEEeeCcE
Q psy18009 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTII--HADEILVMHAGE 136 (277)
Q Consensus 60 ~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~--~~Drv~vL~dG~ 136 (277)
..||+||+||++||||++.+|++|||||||++||+.+.+.++++++++++ +.|+|++||+++++. .|||+++|++|+
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 182 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGR 182 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999999875 568899999999987 599999999999
Q ss_pred EEEecCc
Q psy18009 137 IVERGSL 143 (277)
Q Consensus 137 iv~~g~~ 143 (277)
+++.+..
T Consensus 183 i~~~~~~ 189 (200)
T cd03217 183 IVKSGDK 189 (200)
T ss_pred EEEEccH
Confidence 9887643
No 140
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=4.8e-22 Score=217.16 Aligned_cols=139 Identities=27% Similarity=0.494 Sum_probs=114.7
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+|+.++++.+++..+. . +......+.|+|+|++|+|+. +..+|++++|++++|+.++.
T Consensus 589 ~Ri~~~L~~~~~~~~~-~-~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~ 666 (1495)
T PLN03232 589 QRIEELLLSEERILAQ-N-PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE 666 (1495)
T ss_pred HHHHHHHcCccccccc-c-CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6788888776543221 1 111122356999999999974 35689999999999998763
Q ss_pred --------------------------------------------------------------------------cCHHHH
Q psy18009 62 --------------------------------------------------------------------------LSGGEK 67 (277)
Q Consensus 62 --------------------------------------------------------------------------LSgGqr 67 (277)
||||||
T Consensus 667 ~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 667 LSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred CcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH-HHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009 68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142 (277)
Q Consensus 68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~-~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~ 142 (277)
||++||||++++|+|||||||||+||++..+.+++ +++.+.+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999988865 4666666789999999999887899999999999998775
No 141
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-22 Score=187.37 Aligned_cols=103 Identities=31% Similarity=0.515 Sum_probs=93.2
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++|+.+++. ...++++..|||||||||+|||||+.+|++||+||||++||...+..++++|+++++ +.|+|+|||+
T Consensus 135 ~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4568888985 356889999999999999999999999999999999999999999999999999965 4588889999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.+.. ||||++|.+|++++.|+...
T Consensus 215 l~~~~~~adrv~vm~~G~ive~g~~~~ 241 (327)
T PRK11308 215 LSVVEHIADEVMVMYLGRCVEKGTKEQ 241 (327)
T ss_pred HHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999986 99999999999999887543
No 142
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=3.8e-22 Score=184.99 Aligned_cols=103 Identities=24% Similarity=0.471 Sum_probs=95.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
..+++.+++.-..++++..||+|||||++||+||+.+|++|||||||++||+.+++.+++.+++++++.|+|++||++++
T Consensus 115 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~ 194 (301)
T TIGR03522 115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194 (301)
T ss_pred HHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 35788889987789999999999999999999999999999999999999999999999999999777788899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCcee
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+.. |||+++|++|+++..|+...
T Consensus 195 ~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 195 VEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHH
Confidence 987 99999999999998877543
No 143
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=4.7e-22 Score=178.59 Aligned_cols=101 Identities=36% Similarity=0.541 Sum_probs=91.9
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.++|++||++++
T Consensus 127 ~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred HHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467888887667888999999999999999999999999999999999999999999999999875 5688889999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..++..
T Consensus 207 ~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 207 ARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHhcCEEEEEECCEEEEeCCHH
Confidence 986 9999999999999877653
No 144
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.87 E-value=2.6e-22 Score=176.60 Aligned_cols=95 Identities=33% Similarity=0.501 Sum_probs=86.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 122 EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3578888887667888999999999999999999999999999999999999999999999999965 46888899999
Q ss_pred chhccCceEEEeeCcEE
Q psy18009 121 STIIHADEILVMHAGEI 137 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~i 137 (277)
+++..||++++|++|++
T Consensus 202 ~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 202 ELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHhhhcEEEEeeCCcC
Confidence 99867999999999974
No 145
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.3e-22 Score=182.92 Aligned_cols=102 Identities=27% Similarity=0.424 Sum_probs=92.1
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
++|+.+++. ...++.+..||||||||++|||||+.+|++|||||||++||+.++..+.++++++++ +.|+|++||+++
T Consensus 126 ~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 467888885 456889999999999999999999999999999999999999999999999999875 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. ||||++|++|+++..|+...
T Consensus 206 ~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 206 DVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9976 99999999999999887543
No 146
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=4.7e-22 Score=188.61 Aligned_cols=102 Identities=35% Similarity=0.519 Sum_probs=94.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 119 ~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 119 QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 478889998778899999999999999999999999999999999999999999999999999875 358889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. ||||++|++|+++..|+...
T Consensus 199 ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 199 EAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9987 99999999999999887643
No 147
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.5e-22 Score=188.65 Aligned_cols=102 Identities=29% Similarity=0.492 Sum_probs=94.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 119 ~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 478888988778899999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. ||||++|++|+++..|++..
T Consensus 199 e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 199 EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9986 99999999999999887654
No 148
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.6e-22 Score=189.65 Aligned_cols=103 Identities=32% Similarity=0.506 Sum_probs=94.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 115 ~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 3468889998778899999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. |||+++|++|+++..|+...
T Consensus 195 ~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 195 VEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99986 99999999999998887543
No 149
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.7e-22 Score=176.26 Aligned_cols=101 Identities=38% Similarity=0.583 Sum_probs=91.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3468888988777888999999999999999999999999999999999999999999999999864 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. ||++++|++|+++..++.
T Consensus 202 ~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 202 EVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHhCCEEEEEECCEEEEecCH
Confidence 99986 999999999999987654
No 150
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=185.57 Aligned_cols=101 Identities=32% Similarity=0.545 Sum_probs=91.8
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
++++.+++. -..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|+|||+++
T Consensus 158 ~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 158 FYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred HHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 467888885 457888999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|++.
T Consensus 238 ~~~~~adri~vl~~G~i~~~g~~~ 261 (320)
T PRK13631 238 HVLEVADEVIVMDKGKILKTGTPY 261 (320)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9875 9999999999999988764
No 151
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-22 Score=187.51 Aligned_cols=101 Identities=39% Similarity=0.601 Sum_probs=92.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++||+++
T Consensus 123 ~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 123 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468888988777889999999999999999999999999999999999999999999999999864 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 203 ~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 203 VVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9986 9999999999999888754
No 152
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=6.7e-22 Score=176.49 Aligned_cols=100 Identities=30% Similarity=0.561 Sum_probs=91.3
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++
T Consensus 115 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 115 ALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 467888887777889999999999999999999999999999999999999999999999999863 468888999999
Q ss_pred hhccCceEEEeeCcEEEEecCc
Q psy18009 122 TIIHADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~ 143 (277)
++..||++++|++|+++..++.
T Consensus 195 ~~~~~d~i~~l~~G~i~~~~~~ 216 (236)
T TIGR03864 195 EIEADDRLVVLHRGRVLADGAA 216 (236)
T ss_pred hHhhCCEEEEEeCCeEEEeCCH
Confidence 9867999999999999987764
No 153
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.5e-22 Score=176.26 Aligned_cols=101 Identities=33% Similarity=0.466 Sum_probs=91.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||||||||++||||++.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||++
T Consensus 127 ~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3578889997667888999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhccCceEEEeeCcEEEEecCc
Q psy18009 121 STIIHADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~g~~ 143 (277)
+++..+|++++|++|+++..++.
T Consensus 207 ~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 207 QLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHhhCEEEEEECCEEEEEecc
Confidence 99887789999999999876553
No 154
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=174.53 Aligned_cols=88 Identities=66% Similarity=0.914 Sum_probs=80.3
Q ss_pred CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+++++.|+|++||+++++..|||+++|++|
T Consensus 132 ~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g 211 (236)
T cd03253 132 GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211 (236)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 34567899999999999999999999999999999999999999999999987755888899999998679999999999
Q ss_pred EEEEecCc
Q psy18009 136 EIVERGSL 143 (277)
Q Consensus 136 ~iv~~g~~ 143 (277)
+++..++.
T Consensus 212 ~i~~~~~~ 219 (236)
T cd03253 212 RIVERGTH 219 (236)
T ss_pred EEEeeCCH
Confidence 99877654
No 155
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.6e-22 Score=178.37 Aligned_cols=100 Identities=34% Similarity=0.415 Sum_probs=88.9
Q ss_pred hhcccCc----ccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISF----TVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l----~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++ .-..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.++++|++++++.|+|++||++
T Consensus 130 ~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~ 209 (254)
T PRK14273 130 SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209 (254)
T ss_pred HHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4566665 234577889999999999999999999999999999999999999999999999997667888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 210 ~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 210 QQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99876 9999999999999887653
No 156
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.2e-22 Score=181.19 Aligned_cols=102 Identities=31% Similarity=0.447 Sum_probs=92.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||||||||++|||||+.+|++|||||||++||+.+++.+++.++++++ +.|+|++||++
T Consensus 122 ~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4578888998778889999999999999999999999999999999999999999999999999965 45888999999
Q ss_pred chhccCceEEEeeCcEEEEecCce
Q psy18009 121 STIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
+++..|||+++|++|+++..|+..
T Consensus 202 ~~~~~~dri~~l~~G~i~~~g~~~ 225 (279)
T PRK13650 202 DEVALSDRVLVMKNGQVESTSTPR 225 (279)
T ss_pred HHHHhCCEEEEEECCEEEEECCHH
Confidence 998569999999999999887653
No 157
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.87 E-value=7.3e-22 Score=169.98 Aligned_cols=76 Identities=32% Similarity=0.618 Sum_probs=71.8
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIH-ADEILVMHAGEI 137 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~-~Drv~vL~dG~i 137 (277)
||+|||||++||||++.+|++|||||||++||+.+++.+.+.++++.+ +.|+|++||+++++.. ||++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999865 4688899999999987 999999999974
No 158
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=6.1e-22 Score=176.24 Aligned_cols=101 Identities=33% Similarity=0.473 Sum_probs=90.6
Q ss_pred HhhcccCcc---cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 44 AILKNISFT---VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~---i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
++++.+++. -..++.+..||+||||||+||||++.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||
T Consensus 105 ~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 105 EALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred HHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 467778886 346788999999999999999999999999999999999999999999999999865 458889999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecCce
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++++.. |||+++|++|+++..|+..
T Consensus 185 ~~~~~~~~~d~i~~l~~G~i~~~~~~~ 211 (230)
T TIGR02770 185 DLGVVARIADEVAVMDDGRIVERGTVK 211 (230)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999986 9999999999999877653
No 159
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=4.6e-22 Score=174.21 Aligned_cols=93 Identities=38% Similarity=0.573 Sum_probs=85.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.++|++||++++
T Consensus 117 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~ 196 (211)
T cd03225 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196 (211)
T ss_pred HHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467888887667889999999999999999999999999999999999999999999999999875 4588889999999
Q ss_pred hcc-CceEEEeeCcE
Q psy18009 123 IIH-ADEILVMHAGE 136 (277)
Q Consensus 123 v~~-~Drv~vL~dG~ 136 (277)
+.. ||++++|++|+
T Consensus 197 ~~~~~d~i~~l~~G~ 211 (211)
T cd03225 197 LLELADRVIVLEDGK 211 (211)
T ss_pred HHHhCCEEEEEeCCC
Confidence 987 99999999984
No 160
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=5.3e-22 Score=188.26 Aligned_cols=103 Identities=34% Similarity=0.509 Sum_probs=94.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 116 ~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 116 AELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 3578889998888999999999999999999999999999999999999999999999999999865 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. |||+++|++|+++..|++..
T Consensus 196 ~ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 196 EEALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99986 99999999999999887644
No 161
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.5e-22 Score=180.47 Aligned_cols=101 Identities=36% Similarity=0.497 Sum_probs=92.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.+ +.|+|++||+++
T Consensus 143 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred HHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467888887677889999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..|+..
T Consensus 223 ~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 223 EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHH
Confidence 9876 9999999999999877653
No 162
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.87 E-value=6.6e-22 Score=185.98 Aligned_cols=102 Identities=31% Similarity=0.457 Sum_probs=90.8
Q ss_pred HhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 44 AILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
++|+.+++.- ..++.+..|||||+|||+|||||+.+|++||+||||++||+..+..+.++|+++++ +.|+|+|||
T Consensus 141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4677788752 23668899999999999999999999999999999999999999999999999975 458888999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++++.. |||++||.+|++++.|+...
T Consensus 221 dl~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 221 DLGVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred CHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999986 99999999999999987543
No 163
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=4.3e-22 Score=174.73 Aligned_cols=94 Identities=34% Similarity=0.538 Sum_probs=86.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3467888887677888999999999999999999999999999999999999999999999999865 568889999999
Q ss_pred hhcc-CceEEEeeCcE
Q psy18009 122 TIIH-ADEILVMHAGE 136 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~ 136 (277)
++.. ||++++|++|+
T Consensus 199 ~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 199 LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhcCEEEEecCCC
Confidence 9986 99999999984
No 164
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.5e-22 Score=173.77 Aligned_cols=97 Identities=23% Similarity=0.434 Sum_probs=88.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||++++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 111 EWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred HHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 467888887777888999999999999999999999999999999999999999999999999865 4688899999999
Q ss_pred hcc-CceEEEeeCcEEEEe
Q psy18009 123 IIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~ 140 (277)
+.. ||++++|++|+++..
T Consensus 191 ~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 191 VEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHhhhEEEEEeCCEEEec
Confidence 986 999999999998764
No 165
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3e-22 Score=184.06 Aligned_cols=104 Identities=33% Similarity=0.501 Sum_probs=95.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++|+-+.++-..++++.+|||||||||++||||+.+|++|+||||+++||.+-+..+.+.|+++.+ +.|+++|||+.
T Consensus 119 ~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 119 EELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 3468888888888889999999999999999999999999999999999999999999999999976 46899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCceee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
+|+.. ||||++|++|+|...|++.+.
T Consensus 199 eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 199 EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99997 999999999999988886543
No 166
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.6e-22 Score=169.31 Aligned_cols=75 Identities=44% Similarity=0.696 Sum_probs=70.9
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGE 136 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~ 136 (277)
||+|||||++|||||+.+|+++||||||++||+.+++.+.++|++++++ .|+|++||+++++.. ||++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999998764 688889999999986 99999999884
No 167
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=7.4e-22 Score=176.46 Aligned_cols=102 Identities=32% Similarity=0.512 Sum_probs=92.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus 118 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred HHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3578888987667889999999999999999999999999999999999999999999999999875 468888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 198 FAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHhCCEEEEEECCEEEeeCCHH
Confidence 9986 9999999999999877643
No 168
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=6.9e-22 Score=189.22 Aligned_cols=102 Identities=32% Similarity=0.464 Sum_probs=94.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+++.|.++.+ +.|+|+|||++
T Consensus 146 ~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 146 DEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3578899998888999999999999999999999999999999999999999999999999999865 46899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 226 ~e~~~l~DrI~vl~~G~iv~~g~~~ 250 (382)
T TIGR03415 226 DEALKIGNRIAIMEGGRIIQHGTPE 250 (382)
T ss_pred HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99976 9999999999999988754
No 169
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.9e-22 Score=179.53 Aligned_cols=101 Identities=29% Similarity=0.432 Sum_probs=92.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred HHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 467888887677888999999999999999999999999999999999999999999999999865 4688889999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..|+..
T Consensus 199 ~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 199 IYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHhCCEEEEEECCEEEEeCCHH
Confidence 976 9999999999999887653
No 170
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.5e-22 Score=178.00 Aligned_cols=101 Identities=32% Similarity=0.423 Sum_probs=89.9
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. -..++++..||+||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+
T Consensus 133 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~ 212 (258)
T PRK14268 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212 (258)
T ss_pred HHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence 366777662 2356788999999999999999999999999999999999999999999999999766788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..++..
T Consensus 213 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 213 MQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999986 9999999999999887653
No 171
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.86 E-value=1.2e-21 Score=166.69 Aligned_cols=77 Identities=43% Similarity=0.550 Sum_probs=69.6
Q ss_pred eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 58 TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 58 ~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
.+..||+|||||++||||++.+|++|||||||++||+..++.+.+.++++ +.|+|++||+++....||++++|++|.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 34569999999999999999999999999999999999999999999987 468999999987654599999998763
No 172
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.2e-22 Score=181.07 Aligned_cols=101 Identities=31% Similarity=0.549 Sum_probs=91.8
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++|+.+++. -..++.+..||||||||++|||||+.+|++|||||||++||+.++..+.++++++++ +.|+|++||++
T Consensus 127 ~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 568888986 457788999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 207 ~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 207 NEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHH
Confidence 99976 9999999999999887653
No 173
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-22 Score=177.54 Aligned_cols=101 Identities=22% Similarity=0.455 Sum_probs=92.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|.++++ +.|+|++||+++
T Consensus 136 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~ 215 (255)
T PRK11300 136 TWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK 215 (255)
T ss_pred HHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 457788887778899999999999999999999999999999999999999999999999999865 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..++..
T Consensus 216 ~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 216 LVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHhCCEEEEEECCeEEecCCHH
Confidence 9986 9999999999999877643
No 174
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=8.8e-22 Score=184.62 Aligned_cols=102 Identities=34% Similarity=0.478 Sum_probs=93.3
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468888888778889999999999999999999999999999999999999999999999999864 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. |||+++|++|+++..|+...
T Consensus 163 e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 163 EAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9986 99999999999998887543
No 175
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=177.44 Aligned_cols=102 Identities=31% Similarity=0.530 Sum_probs=92.2
Q ss_pred HHhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++++.+++... .++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.++|++||++
T Consensus 133 ~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 356888998754 4788999999999999999999999999999999999999999999999999975 56888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 213 ~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 213 GFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999877653
No 176
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=5e-22 Score=195.31 Aligned_cols=102 Identities=33% Similarity=0.480 Sum_probs=93.5
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l 120 (277)
++|+.+++.- ..++++.+|||||||||+|||||+.+|++||+|||||+||+.....+.++|+++.+. -|.|+|||||
T Consensus 411 ~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 411 ELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred HHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 3588888875 478899999999999999999999999999999999999999999999999999764 5888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+.+.. ||||.||++|++++.|+...
T Consensus 491 ~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 491 AVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHhhCceEEEEECCeEEEeCCHHH
Confidence 99997 99999999999999997543
No 177
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.86 E-value=1.1e-21 Score=172.63 Aligned_cols=100 Identities=32% Similarity=0.474 Sum_probs=91.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||+|||||++||||++.+|+++||||||++||+.+++.+++.|+++.+ +.|+|++||++
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 110 VDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3478888987667888999999999999999999999999999999999999999999999999864 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecC
Q psy18009 121 STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+++.. ||++++|++|++++.|+
T Consensus 190 ~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 190 SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhhcCeEEEEECCeEEEecC
Confidence 99886 99999999999988764
No 178
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=176.37 Aligned_cols=101 Identities=28% Similarity=0.428 Sum_probs=90.8
Q ss_pred HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++.. ..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 125 ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred HHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4577777742 357788999999999999999999999999999999999999999999999999766789999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|++++.|+..
T Consensus 205 ~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 205 MQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999976 9999999999999988754
No 179
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=9.4e-22 Score=179.33 Aligned_cols=101 Identities=24% Similarity=0.370 Sum_probs=91.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||+++
T Consensus 126 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 126 MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 357888887667888999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..|+..
T Consensus 206 ~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 206 EVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHhhCEEEEEECCEEEEeCCHH
Confidence 9986 9999999999999887654
No 180
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=176.57 Aligned_cols=100 Identities=30% Similarity=0.443 Sum_probs=88.7
Q ss_pred hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++.- ..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++
T Consensus 129 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~ 208 (253)
T PRK14242 129 SLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNM 208 (253)
T ss_pred HHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecH
Confidence 466666631 3467789999999999999999999999999999999999999999999999997667889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 209 ~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 209 QQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999877643
No 181
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=174.60 Aligned_cols=101 Identities=34% Similarity=0.505 Sum_probs=92.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 111 HAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3468888988778889999999999999999999999999999999999999999999999999854 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. |||+++|++|+++..|+.
T Consensus 191 ~~~~~~~d~i~~l~~g~i~~~g~~ 214 (232)
T PRK10771 191 EDAARIAPRSLVVADGRIAWDGPT 214 (232)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99986 999999999999987764
No 182
>PRK10908 cell division protein FtsE; Provisional
Probab=99.86 E-value=9.2e-22 Score=173.90 Aligned_cols=96 Identities=28% Similarity=0.426 Sum_probs=88.3
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.++|++||++++
T Consensus 120 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 120 AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred HHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 567888887677888999999999999999999999999999999999999999999999999865 4688889999999
Q ss_pred hcc-CceEEEeeCcEEEE
Q psy18009 123 IIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~ 139 (277)
+.. |||+++|++|+++.
T Consensus 200 ~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 200 ISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHhCCEEEEEECCEEcc
Confidence 986 99999999999864
No 183
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.86 E-value=9.1e-22 Score=188.06 Aligned_cols=102 Identities=34% Similarity=0.504 Sum_probs=93.9
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|+|||+++
T Consensus 127 ~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 127 EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred HHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468888998788999999999999999999999999999999999999999999999999999865 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. ||||++|++|+++..|+...
T Consensus 207 ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 207 EALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9986 99999999999999887543
No 184
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=9.4e-22 Score=176.17 Aligned_cols=101 Identities=34% Similarity=0.534 Sum_probs=91.3
Q ss_pred HHhhcccCccc--ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 43 RAILKNISFTV--PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 43 ~~vL~~l~l~i--~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
.++++.+++.. ..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.++|++||
T Consensus 115 ~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred HHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 35688888874 56888999999999999999999999999999999999999999999999999864 468888999
Q ss_pred Ccchhcc-CceEEEeeCcEEEEecCc
Q psy18009 119 RLSTIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++++.. ||++++|++|+++..++.
T Consensus 195 ~~~~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 195 DIDEAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred CHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999886 999999999999987764
No 185
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=178.23 Aligned_cols=101 Identities=34% Similarity=0.486 Sum_probs=92.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 115 ~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 115 LQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4578889998777889999999999999999999999999999999999999999999999999853 46889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. ||++++|++|+++..++.
T Consensus 195 ~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 195 SEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHHHhCCEEEEEECCEEEeeccc
Confidence 99876 999999999999887654
No 186
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.86 E-value=8e-22 Score=172.85 Aligned_cols=94 Identities=30% Similarity=0.485 Sum_probs=86.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||++++
T Consensus 119 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 119 AALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred HHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467888887777888999999999999999999999999999999999999999999999999864 5688889999999
Q ss_pred hcc-CceEEEeeCcEE
Q psy18009 123 IIH-ADEILVMHAGEI 137 (277)
Q Consensus 123 v~~-~Drv~vL~dG~i 137 (277)
+.. ||++++|++|++
T Consensus 199 ~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 199 VDTTRHRVIALERGKL 214 (214)
T ss_pred HHHhCCEEEEEeCCcC
Confidence 986 999999999974
No 187
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.86 E-value=1.2e-21 Score=174.10 Aligned_cols=98 Identities=28% Similarity=0.343 Sum_probs=88.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~e 122 (277)
.+++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+.+++.+++.++++.++ .|+|++||++++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4567778877778899999999999999999999999999999999999999999999999998654 688889999999
Q ss_pred hcc-CceEEEeeCcEEEEec
Q psy18009 123 IIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g 141 (277)
+.. |||+++|++|+++..|
T Consensus 205 ~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 205 IKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHhCCEEEEEECCEEEecC
Confidence 986 9999999999997654
No 188
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=178.08 Aligned_cols=102 Identities=27% Similarity=0.425 Sum_probs=92.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++
T Consensus 129 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3578888987778889999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 209 ~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 209 NMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHhCCEEEEEECCeEEEecCHH
Confidence 99986 9999999999999877643
No 189
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=7e-22 Score=182.85 Aligned_cols=105 Identities=31% Similarity=0.438 Sum_probs=94.0
Q ss_pred HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009 43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs 117 (277)
.++|+.+++.- ..+.++.+|||||||||.||.||+.+|++||.||||++||.....+++++|+++++ +.++|+||
T Consensus 132 ~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT 211 (316)
T COG0444 132 IELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211 (316)
T ss_pred HHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45788888864 35778899999999999999999999999999999999999999999999999976 34777899
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCceeee
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSLFVSL 147 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~~~~ 147 (277)
||+.-+.. ||||.||..|++++.|+....+
T Consensus 212 HDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 212 HDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 99999987 9999999999999999865433
No 190
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=1.1e-21 Score=188.89 Aligned_cols=102 Identities=27% Similarity=0.455 Sum_probs=94.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++|+.+++.-..++++..||||||||++|||||+++|++|||||||++||+..+..++++|+++.+ +.|+|++||+++
T Consensus 121 ~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4578889998778899999999999999999999999999999999999999999999999999975 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 201 ~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 201 LAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHhCCEEEEEECCEEEEecCHH
Confidence 9986 9999999999999988754
No 191
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1.1e-21 Score=185.84 Aligned_cols=102 Identities=33% Similarity=0.565 Sum_probs=93.5
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 113 ~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 113 ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3578889998778899999999999999999999999999999999999999999999999999865 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 193 ~~~~~~~d~i~~l~~G~i~~~g~~~ 217 (354)
T TIGR02142 193 QEVLRLADRVVVLEDGRVAAAGPIA 217 (354)
T ss_pred HHHHHhCCEEEEEeCCEEEEECCHH
Confidence 99986 9999999999999887653
No 192
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=1.3e-21 Score=173.41 Aligned_cols=97 Identities=33% Similarity=0.472 Sum_probs=88.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++....++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||++
T Consensus 128 ~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3468888887667888999999999999999999999999999999999999999999999999854 45888999999
Q ss_pred chhccCceEEEeeCcEEEE
Q psy18009 121 STIIHADEILVMHAGEIVE 139 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~ 139 (277)
+++..||++++|++|++++
T Consensus 208 ~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 208 QLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHhCCEEEEEECCEEEe
Confidence 9886699999999999875
No 193
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=175.37 Aligned_cols=101 Identities=29% Similarity=0.380 Sum_probs=90.1
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++. -..++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 204 (250)
T PRK14247 125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF 204 (250)
T ss_pred HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456777764 2357788999999999999999999999999999999999999999999999999766788899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 205 ~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 205 PQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHhcCEEEEEECCeEEEECCHH
Confidence 999976 9999999999999877653
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=1.6e-21 Score=173.82 Aligned_cols=90 Identities=53% Similarity=0.806 Sum_probs=82.8
Q ss_pred cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeC
Q psy18009 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
.++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+++++..||++++|++
T Consensus 132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~ 211 (237)
T cd03252 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211 (237)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999766688899999999866999999999
Q ss_pred cEEEEecCce
Q psy18009 135 GEIVERGSLF 144 (277)
Q Consensus 135 G~iv~~g~~~ 144 (277)
|+++..++..
T Consensus 212 G~i~~~~~~~ 221 (237)
T cd03252 212 GRIVEQGSHD 221 (237)
T ss_pred CEEEEEcCHH
Confidence 9999877643
No 195
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=185.57 Aligned_cols=102 Identities=34% Similarity=0.542 Sum_probs=93.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|+|||++
T Consensus 110 ~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 110 DKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred HHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 3578889998778899999999999999999999999999999999999999999999999999865 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 190 ~~~~~~~d~i~~l~~G~i~~~g~~~ 214 (352)
T PRK11144 190 DEILRLADRVVVLEQGKVKAFGPLE 214 (352)
T ss_pred HHHHHhCCEEEEEeCCEEEEecCHH
Confidence 99986 9999999999999888754
No 196
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=1.1e-21 Score=172.84 Aligned_cols=100 Identities=28% Similarity=0.436 Sum_probs=89.2
Q ss_pred Hhhccc-CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNI-SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l-~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.+++.+ ++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 114 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred HHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 456666 466567888999999999999999999999999999999999999999999999999875 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. ||++++|++|+++..++.
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 194 FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHhccEEEEeeCCeEEEeCCH
Confidence 9986 999999999999877653
No 197
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=178.43 Aligned_cols=101 Identities=30% Similarity=0.444 Sum_probs=92.4
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.++..+++.++++++ +.|+|++||++++
T Consensus 119 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~ 198 (274)
T PRK13644 119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198 (274)
T ss_pred HHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 467888998778889999999999999999999999999999999999999999999999999875 4588889999999
Q ss_pred hccCceEEEeeCcEEEEecCce
Q psy18009 123 IIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~~Drv~vL~dG~iv~~g~~~ 144 (277)
+..|||+++|++|+++..|+..
T Consensus 199 ~~~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 199 LHDADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HhhCCEEEEEECCEEEEECCHH
Confidence 8669999999999999877653
No 198
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=1.4e-21 Score=176.69 Aligned_cols=101 Identities=30% Similarity=0.468 Sum_probs=91.4
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++++.+++.. ..++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||++
T Consensus 133 ~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 133 DWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 5678888863 56888999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|++++.|+..
T Consensus 213 ~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 213 AVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887654
No 199
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=8.8e-22 Score=169.74 Aligned_cols=103 Identities=32% Similarity=0.501 Sum_probs=96.5
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
...|.++|+....+.+++.||||||||++|||||+++|++++||||||+|||+-..++++.+++|.+. +|.+++||.|.
T Consensus 134 e~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 134 EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 34689999999999999999999999999999999999999999999999999999999999999875 69999999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
.... +.+|+.|.+|.+-+.|++..
T Consensus 214 FAR~Vss~v~fLh~G~iEE~G~P~q 238 (256)
T COG4598 214 FARDVSSHVIFLHQGKIEEEGPPEQ 238 (256)
T ss_pred HHHhhhhheEEeecceecccCChHH
Confidence 9998 99999999999999888754
No 200
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=175.55 Aligned_cols=101 Identities=28% Similarity=0.388 Sum_probs=89.9
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.++.|+|++||+
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 207 (253)
T PRK14267 128 WALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS 207 (253)
T ss_pred HHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECC
Confidence 356667763 2357788999999999999999999999999999999999999999999999999766789999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 208 PAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999986 9999999999999887653
No 201
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=178.46 Aligned_cols=102 Identities=34% Similarity=0.479 Sum_probs=92.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
..+++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++++++++ +.|+|++||++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 119 SSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 3467888888778889999999999999999999999999999999999999999999999999875 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 199 ~~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 199 DLVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHhCCEEEEEECCeEEEECCHH
Confidence 99976 9999999999999887654
No 202
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1e-21 Score=175.63 Aligned_cols=104 Identities=25% Similarity=0.467 Sum_probs=97.5
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l 120 (277)
..+|+.+++.-..+++.+.||+|||++++|||||+.+|++|+||||.|+|.+.+.+.+.+.|+++++. .|+++|.|+|
T Consensus 131 ~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 131 RELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred HHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999874 4788899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCceee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
+.++. ||||+||+.|+++++|++.+.
T Consensus 211 ~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 211 KLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHhhhccEEEeccCCcCcccCCHHHH
Confidence 99997 999999999999999987653
No 203
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=179.47 Aligned_cols=101 Identities=33% Similarity=0.553 Sum_probs=90.2
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.+++.+++. -..++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|++||++
T Consensus 132 ~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 457778883 456788999999999999999999999999999999999999999999999999864 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 212 ~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 212 DQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99886 9999999999999877643
No 204
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=174.25 Aligned_cols=101 Identities=36% Similarity=0.544 Sum_probs=91.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++....++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||++++
T Consensus 124 ~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 457788887677888999999999999999999999999999999999999999999999999875 4688889999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..++..
T Consensus 204 ~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 204 ARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHhcCEEEEEECCEEEEeCCHH
Confidence 986 9999999999999877643
No 205
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=1.7e-21 Score=175.43 Aligned_cols=102 Identities=34% Similarity=0.509 Sum_probs=92.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.++..+++.|+++.+ +.|+|++||++
T Consensus 128 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 3568888887667888999999999999999999999999999999999999999999999999865 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 208 GFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99976 9999999999999877653
No 206
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=177.74 Aligned_cols=101 Identities=36% Similarity=0.469 Sum_probs=93.1
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++.-..++++..||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++++ +.|+|++||++++
T Consensus 120 ~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 120 EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred HHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 478888987778889999999999999999999999999999999999999999999999999975 4688899999999
Q ss_pred hcc-CceEEEeeCcEEEEecCce
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+.. |||+++|++|+++..|+..
T Consensus 200 ~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 200 VPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHhCCEEEEEECCEEEEeCCHH
Confidence 986 9999999999999887754
No 207
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-21 Score=178.12 Aligned_cols=102 Identities=32% Similarity=0.506 Sum_probs=93.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
..+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||++
T Consensus 126 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 126 DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 3468888998778899999999999999999999999999999999999999999999999999964 45888999999
Q ss_pred chhccCceEEEeeCcEEEEecCce
Q psy18009 121 STIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
+++..|||+++|++|+++..|+..
T Consensus 206 ~~~~~~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 206 EEAVEADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred HHHhcCCEEEEEECCEEEEecCHH
Confidence 998779999999999999887654
No 208
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=1.2e-21 Score=171.52 Aligned_cols=95 Identities=34% Similarity=0.530 Sum_probs=86.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus 117 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred HHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3467788887677889999999999999999999999999999999999999999999999999975 468888999999
Q ss_pred hhcc-CceEEEeeCcEE
Q psy18009 122 TIIH-ADEILVMHAGEI 137 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~i 137 (277)
++.. ||++++|++|++
T Consensus 197 ~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 197 FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhCCEEEEEeCCcC
Confidence 9986 999999999974
No 209
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-21 Score=177.89 Aligned_cols=101 Identities=30% Similarity=0.444 Sum_probs=90.8
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
++++.+++. ...++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|++||+++
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 127 EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 456778886 356888999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..|+..
T Consensus 207 ~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 207 DVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9986 9999999999999877643
No 210
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=175.77 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=92.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....++.+..||+||+||++||||++.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||+++
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 120 NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3567888887777889999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..++..
T Consensus 200 ~~~~~~d~i~~l~~G~i~~~~~~~ 223 (255)
T PRK11231 200 QASRYCDHLVVLANGHVMAQGTPE 223 (255)
T ss_pred HHHHhcCEEEEEECCeEEEEcCHH
Confidence 9986 9999999999998877643
No 211
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-21 Score=178.19 Aligned_cols=102 Identities=35% Similarity=0.528 Sum_probs=93.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
..+++.+++....++++..||+|||||++|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|++||++
T Consensus 122 ~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 122 DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 4467888998788889999999999999999999999999999999999999999999999999975 45888899999
Q ss_pred chhccCceEEEeeCcEEEEecCce
Q psy18009 121 STIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
+++..|||+++|++|++++.|+..
T Consensus 202 ~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 202 DEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHcCCEEEEEECCEEEEECCHH
Confidence 998779999999999999887643
No 212
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=1.8e-21 Score=177.01 Aligned_cols=103 Identities=30% Similarity=0.444 Sum_probs=93.0
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++++.+++. ...++.+..||+||||||+|||||+.+|++|||||||++||+...+.+.+.|+++.+ +.|+|++||+
T Consensus 131 ~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 131 AELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3578888985 567888999999999999999999999999999999999999999999999999865 4688899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++++.. ||++++|++|+++..|+...
T Consensus 211 ~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 211 LRLVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHHHHhcEEEEEeCCEEEEECCHHH
Confidence 999986 99999999999998887643
No 213
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=174.80 Aligned_cols=100 Identities=28% Similarity=0.434 Sum_probs=89.7
Q ss_pred HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++.- ..+..+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4578888742 346678899999999999999999999999999999999999999999999999766789999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCc
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++++.. |||+++|++|+++..++.
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEEeCCH
Confidence 999986 999999999999987664
No 214
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=176.72 Aligned_cols=102 Identities=28% Similarity=0.399 Sum_probs=93.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++....++.+..||+|||||++||||++.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++||++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3578888988778899999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 205 ~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 205 NQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887653
No 215
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.8e-21 Score=177.05 Aligned_cols=100 Identities=30% Similarity=0.434 Sum_probs=88.5
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||||||||++|||||+.+|++|||||||++||+.+++.+.++|++++++.|+|++||++
T Consensus 144 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred HHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence 45566652 23567889999999999999999999999999999999999999999999999997767888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 224 ~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 224 QQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887643
No 216
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=174.72 Aligned_cols=100 Identities=32% Similarity=0.405 Sum_probs=88.6
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+||||||+|||||+.+|++|||||||++||+.+++.++++|+++.++.|+|++||++
T Consensus 128 ~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 128 SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred HHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence 45666652 23567888999999999999999999999999999999999999999999999987667899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 208 QQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887654
No 217
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=174.09 Aligned_cols=102 Identities=32% Similarity=0.461 Sum_probs=91.4
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
..+++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+
T Consensus 112 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred HHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3467888885 356788999999999999999999999999999999999999999999999999864 4688899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..++..
T Consensus 192 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 192 MEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999986 9999999999999877654
No 218
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=176.35 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=92.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||+||||||+|||||+.+|++|||||||++||+...+.+.+.|+++++ +.|+|++||++
T Consensus 134 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred HHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4578888987667889999999999999999999999999999999999999999999999999964 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 214 ~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 214 DYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99876 9999999999999887754
No 219
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.2e-21 Score=172.24 Aligned_cols=101 Identities=27% Similarity=0.518 Sum_probs=91.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++.-..+.++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+++
T Consensus 95 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 95 RDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3468888998777888999999999999999999999999999999999999999999999999875 458899999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||+++++ +|+++..|+..
T Consensus 175 ~~~~~~d~i~~l-~G~i~~~~~~~ 197 (223)
T TIGR03771 175 QAMATCDRVVLL-NGRVIADGTPQ 197 (223)
T ss_pred HHHHhCCEEEEE-CCEEEeecCHH
Confidence 9986 9999999 89999877654
No 220
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=2.1e-21 Score=175.46 Aligned_cols=102 Identities=29% Similarity=0.496 Sum_probs=93.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....++.+..||+|||||++||||++.+|+++||||||++||+.+.+.+.++|+++++ +.|+|++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 119 DRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3468888998778889999999999999999999999999999999999999999999999999975 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 199 ~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 199 LAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHhCCEEEEEeCCCEEEecCHH
Confidence 9976 9999999999999877653
No 221
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=173.91 Aligned_cols=101 Identities=33% Similarity=0.460 Sum_probs=90.7
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+
T Consensus 121 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 200 (246)
T PRK14269 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200 (246)
T ss_pred HHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 467888883 2356778899999999999999999999999999999999999999999999998776788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 201 MQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999986 9999999999999887654
No 222
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=174.61 Aligned_cols=101 Identities=33% Similarity=0.465 Sum_probs=89.9
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||+
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 205 (251)
T PRK14251 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205 (251)
T ss_pred HHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 356666763 3457788999999999999999999999999999999999999999999999999766789999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..++..
T Consensus 206 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 206 LQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999986 9999999999999877653
No 223
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=166.18 Aligned_cols=101 Identities=37% Similarity=0.572 Sum_probs=95.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ 121 (277)
.++|+++.+.-.+++.+-.|||||+|||+|||||+++|++|++||||++|||+-..++.++|++|...| |-+++||..+
T Consensus 123 ~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 467999999999999999999999999999999999999999999999999999999999999998755 8889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
.... +.||+.|++|+|++.|+.
T Consensus 203 va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 203 VARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHhhhhheEeeecCeeEeecch
Confidence 9887 999999999999998874
No 224
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=175.85 Aligned_cols=101 Identities=30% Similarity=0.395 Sum_probs=89.6
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|++++++.|+|++||+
T Consensus 135 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~ 214 (260)
T PRK10744 135 WALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214 (260)
T ss_pred HHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 456777762 2357788999999999999999999999999999999999999999999999999766788899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 215 ~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 215 MQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999976 9999999999999887653
No 225
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=1.9e-21 Score=172.59 Aligned_cols=101 Identities=30% Similarity=0.444 Sum_probs=89.6
Q ss_pred HhhcccC-cccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNIS-FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~-l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++++.++ +.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|.++++ +.|+|++||++
T Consensus 113 ~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 113 EIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 3566665 45556888999999999999999999999999999999999999999999999999875 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|+++..++..
T Consensus 193 ~~~~~~~d~v~~l~~g~i~~~~~~~ 217 (230)
T TIGR03410 193 DFARELADRYYVMERGRVVASGAGD 217 (230)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHH
Confidence 99986 9999999999999877653
No 226
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.3e-21 Score=186.68 Aligned_cols=101 Identities=36% Similarity=0.522 Sum_probs=92.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+++.|+++++ +.|+|++||+++
T Consensus 147 e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 147 DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 468889998778899999999999999999999999999999999999999999999999999864 468899999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..|+..
T Consensus 227 ~~~~~~Dri~vL~~G~i~~~g~~~ 250 (400)
T PRK10070 227 EAMRIGDRIAIMQNGEVVQVGTPD 250 (400)
T ss_pred HHHHhCCEEEEEECCEEEecCCHH
Confidence 9986 9999999999999877653
No 227
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=2.1e-21 Score=176.82 Aligned_cols=101 Identities=32% Similarity=0.520 Sum_probs=91.0
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++++.+++. ...+..+..||+||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 468888884 556778899999999999999999999999999999999999999999999999864 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 211 ~~~~~~~d~i~~l~~G~i~~~~~~~ 235 (267)
T PRK15112 211 GMMKHISDQVLVMHQGEVVERGSTA 235 (267)
T ss_pred HHHHHhcCEEEEEECCEEEecCCHH
Confidence 99986 9999999999999877643
No 228
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=2.1e-21 Score=171.68 Aligned_cols=101 Identities=29% Similarity=0.418 Sum_probs=92.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..+..+..||+||+||++||||++.+|++|||||||++||+.+++.+.++|+++++ +.++|++||+++
T Consensus 106 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 106 DEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred HHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4567888887667888999999999999999999999999999999999999999999999999865 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. |||+++|++|+++..++.
T Consensus 186 ~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 186 EVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHHHhcCEEEEEeCCEEEEecCh
Confidence 9976 999999999999987764
No 229
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=2.4e-21 Score=173.38 Aligned_cols=98 Identities=28% Similarity=0.437 Sum_probs=88.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.+ ++|+|++||+++
T Consensus 136 ~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 215 (236)
T cd03267 136 ELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215 (236)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 457778887667888999999999999999999999999999999999999999999999999864 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEec
Q psy18009 122 TIIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g 141 (277)
++.. ||++++|++|+++..|
T Consensus 216 ~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 216 DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHhCCEEEEEeCCEEEecC
Confidence 9886 9999999999997643
No 230
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=1.4e-21 Score=168.58 Aligned_cols=101 Identities=31% Similarity=0.479 Sum_probs=93.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ 121 (277)
.++..+|+.-...+.+..|||||||||++||+|+++-+||+||||+|+|||.-+.++..++.+++.+ .|+++|||..+
T Consensus 112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred HHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 4677888888888888999999999999999999999999999999999999999999999999863 49999999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. +||++++++|+|.+.|+..
T Consensus 192 Da~~ia~~~~fl~~Gri~~~g~~~ 215 (231)
T COG3840 192 DAARIADRVVFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHHHhhhceEEEeCCEEEeeccHH
Confidence 9987 9999999999999988754
No 231
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.1e-21 Score=171.45 Aligned_cols=94 Identities=55% Similarity=0.820 Sum_probs=84.7
Q ss_pred CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceE
Q psy18009 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI 129 (277)
Q Consensus 50 ~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv 129 (277)
++....+.++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++++..||++
T Consensus 127 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v 206 (234)
T cd03251 127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRI 206 (234)
T ss_pred CcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEE
Confidence 34444567788999999999999999999999999999999999999999999999997767888999999998779999
Q ss_pred EEeeCcEEEEecCc
Q psy18009 130 LVMHAGEIVERGSL 143 (277)
Q Consensus 130 ~vL~dG~iv~~g~~ 143 (277)
++|++|+++..++.
T Consensus 207 ~~l~~G~i~~~~~~ 220 (234)
T cd03251 207 VVLEDGKIVERGTH 220 (234)
T ss_pred EEecCCeEeeeCCH
Confidence 99999999887654
No 232
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-21 Score=173.23 Aligned_cols=102 Identities=22% Similarity=0.410 Sum_probs=91.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred HHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 3467888887667888999999999999999999999999999999999999999999999999875 468888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. ||++++|++|+++..++..
T Consensus 199 ~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 199 ETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHhcCEEEEEeCCeEEeeCCHH
Confidence 9986 9999999999999877653
No 233
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=2.6e-21 Score=174.20 Aligned_cols=101 Identities=31% Similarity=0.488 Sum_probs=91.1
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++++.+++. ...++.+..|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++.+ +.|+|++||+
T Consensus 129 ~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 129 HDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred HHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3467888886 467888999999999999999999999999999999999999999999999999854 4688899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCc
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++++.. |||+++|++|+++..++.
T Consensus 209 ~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 209 LGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHhcCEEEEEECCEEEEECCH
Confidence 999986 999999999999987764
No 234
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=3.8e-21 Score=211.13 Aligned_cols=139 Identities=32% Similarity=0.557 Sum_probs=113.1
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc--hHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~--~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+||.++++.+..... ++.+ .....+.|+|+|++|+|+. ...+|+++++++++|+.++.
T Consensus 589 ~RI~~~L~~~e~~~~-~~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~ 666 (1622)
T PLN03130 589 KRLEELLLAEERVLL-PNPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666 (1622)
T ss_pred HHHHHHHcCcccccc-cCCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578888876533211 1111 1112346999999999974 35689999999999997653
Q ss_pred --------------------------------------------------------------------------cCHHHH
Q psy18009 62 --------------------------------------------------------------------------LSGGEK 67 (277)
Q Consensus 62 --------------------------------------------------------------------------LSgGqr 67 (277)
||||||
T Consensus 667 ~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK 746 (1622)
T PLN03130 667 LPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746 (1622)
T ss_pred hccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence 999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009 68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142 (277)
Q Consensus 68 Qrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~-~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~ 142 (277)
|||+||||++++|+|||||||||+||++..+.++ +.++.+.+++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999998876 56676667789999999998887899999999999998775
No 235
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=175.42 Aligned_cols=101 Identities=33% Similarity=0.568 Sum_probs=90.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiIiIsH~l 120 (277)
.++++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+.+.|+++. + +.|+|++||++
T Consensus 110 ~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred HHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 356888888766788899999999999999999999999999999999999999999999999984 3 56888999999
Q ss_pred chhcc-CceEEEee--CcEEEEecCc
Q psy18009 121 STIIH-ADEILVMH--AGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~--dG~iv~~g~~ 143 (277)
+++.. |||+++|+ +|+++..++.
T Consensus 190 ~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 190 EEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99986 99999998 5999876543
No 236
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=2.9e-21 Score=174.47 Aligned_cols=102 Identities=28% Similarity=0.407 Sum_probs=90.5
Q ss_pred HHhhcccCccc---ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEe
Q psy18009 43 RAILKNISFTV---PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i---~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIs 117 (277)
.++++.+++.. ..++.+..||+||||||+|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|+|++|
T Consensus 119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 34677788764 24778899999999999999999999999999999999999999999999999864 46888999
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
|+++++.. |||+++|++|+++..++..
T Consensus 199 H~~~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 199 HDMGVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999986 9999999999999877653
No 237
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.85 E-value=2.7e-21 Score=170.32 Aligned_cols=83 Identities=43% Similarity=0.642 Sum_probs=76.6
Q ss_pred eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEE
Q psy18009 58 TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEI 137 (277)
Q Consensus 58 ~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~i 137 (277)
.+..||||||||++||||++.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+++++..||++++|++|++
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i 216 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeE
Confidence 45789999999999999999999999999999999999999999999999766788899999998745999999999998
Q ss_pred EEe
Q psy18009 138 VER 140 (277)
Q Consensus 138 v~~ 140 (277)
+..
T Consensus 217 ~~~ 219 (220)
T cd03245 217 VAD 219 (220)
T ss_pred eec
Confidence 764
No 238
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=3.3e-21 Score=172.03 Aligned_cols=102 Identities=27% Similarity=0.417 Sum_probs=89.4
Q ss_pred HHhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~ 119 (277)
..+++.+++. ...++++. .||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred HHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 3467778886 34567776 5999999999999999999999999999999999999999999999975 4688899999
Q ss_pred cchhcc--CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH--ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~--~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. ||++++|++|+++..|+..
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 204 QRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 999974 7999999999999877653
No 239
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.9e-21 Score=176.59 Aligned_cols=122 Identities=29% Similarity=0.395 Sum_probs=100.6
Q ss_pred ccCceEEEeeeeeee--C-----chHHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHH
Q psy18009 25 VAQGAVEFRNVSFSY--T-----PERAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96 (277)
Q Consensus 25 ~~~g~i~~~nvsf~Y--~-----~~~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~ 96 (277)
|+.|.|.|++-...- . .-.++|+.+|+.- ...+....|||||+||++|||||+.+|+++++|||+|+||...
T Consensus 65 pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi 144 (268)
T COG4608 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144 (268)
T ss_pred CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH
Confidence 456777777543211 0 1235677777753 5677778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEEEecCceee
Q psy18009 97 ERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 97 ~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
+.++..++.++++. -+.++|||++..+.. ||||.||..|++++.|+....
T Consensus 145 qaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence 99999999999763 488889999999997 999999999999998875443
No 240
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.3e-21 Score=176.51 Aligned_cols=101 Identities=34% Similarity=0.484 Sum_probs=91.5
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus 123 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 123 EALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467777887667888999999999999999999999999999999999999999999999999975 468889999999
Q ss_pred hhccCceEEEeeCcEEEEecCce
Q psy18009 122 TIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
++..|||+++|++|+++..|+..
T Consensus 203 ~~~~~d~i~~l~~G~i~~~g~~~ 225 (277)
T PRK13642 203 EAASSDRILVMKAGEIIKEAAPS 225 (277)
T ss_pred HHHhCCEEEEEECCEEEEeCCHH
Confidence 98679999999999999877653
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5e-21 Score=167.60 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=75.6
Q ss_pred cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE-ecCcchhcc-CceEE
Q psy18009 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV-AHRLSTIIH-ADEIL 130 (277)
Q Consensus 55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI-sH~l~ev~~-~Drv~ 130 (277)
.++++..||+||+||++|||||+.+|++|||||||++||+..++.+.++++++.+ +.++|++ +|+++++.. ||+++
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 4667788999999999999999999999999999999999999999999999865 3466665 455688876 99999
Q ss_pred EeeCcEEEEe
Q psy18009 131 VMHAGEIVER 140 (277)
Q Consensus 131 vL~dG~iv~~ 140 (277)
+|++|+++..
T Consensus 192 ~l~~G~i~~~ 201 (202)
T cd03233 192 VLYEGRQIYY 201 (202)
T ss_pred EEECCEEEec
Confidence 9999998764
No 242
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.2e-21 Score=174.88 Aligned_cols=101 Identities=37% Similarity=0.535 Sum_probs=91.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..+..+..||+|||||++||||++.+|++|||||||++||+.+++.+++.++++++ +.|+|++||+++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 467888887667888999999999999999999999999999999999999999999999999864 458888999999
Q ss_pred hhccCceEEEeeCcEEEEecCce
Q psy18009 122 TIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
++..|||+++|++|+++..|+..
T Consensus 205 ~~~~~d~i~~l~~G~i~~~g~~~ 227 (269)
T PRK13648 205 EAMEADHVIVMNKGTVYKEGTPT 227 (269)
T ss_pred HHhcCCEEEEEECCEEEEecCHH
Confidence 98779999999999999887653
No 243
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.9e-21 Score=184.74 Aligned_cols=102 Identities=32% Similarity=0.463 Sum_probs=93.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.++++.+ +.|+|++||+++
T Consensus 132 ~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 568888998778889999999999999999999999999999999999999999999999988754 458889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. |||+++|++|+++..|++..
T Consensus 212 ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 212 EAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 9986 99999999999999888654
No 244
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.8e-21 Score=190.58 Aligned_cols=102 Identities=25% Similarity=0.462 Sum_probs=92.7
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++++ +.|+|++||++
T Consensus 386 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 386 LESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred HHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 3578899995 467899999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 466 ~~~~~~~d~v~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 466 PEVLGLSDRVLVMHEGKLKGDLINH 490 (506)
T ss_pred HHHHHhCCEEEEEECCEEEEEeccc
Confidence 99986 9999999999998877553
No 245
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.9e-21 Score=173.14 Aligned_cols=101 Identities=31% Similarity=0.447 Sum_probs=89.6
Q ss_pred HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++.- ..+..+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||+
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~ 206 (252)
T PRK14256 127 SSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206 (252)
T ss_pred HHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence 4566777632 345678899999999999999999999999999999999999999999999999777788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 207 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 207 MQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999986 9999999999999887653
No 246
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=173.74 Aligned_cols=100 Identities=32% Similarity=0.470 Sum_probs=89.3
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+..+..+.+.|+++.++.|+|++||++
T Consensus 135 ~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 214 (259)
T PRK14274 135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNM 214 (259)
T ss_pred HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 45666663 13567889999999999999999999999999999999999999999999999997767899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 215 ~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 215 QQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHH
Confidence 99986 9999999999999887754
No 247
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=4.6e-21 Score=173.80 Aligned_cols=101 Identities=36% Similarity=0.560 Sum_probs=91.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHh-c-CceEE
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVC-A-SRTTI 114 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~-~-~~tiI 114 (277)
..+++.+++.-..++.+..|||||||||+|||||+ .+|++|||||||++||+..++.+.+.|+++. + +.|+|
T Consensus 116 ~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 195 (258)
T PRK13548 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVI 195 (258)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 34688889887778899999999999999999999 5999999999999999999999999999986 4 46888
Q ss_pred EEecCcchhcc-CceEEEeeCcEEEEecCc
Q psy18009 115 IVAHRLSTIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 115 iIsH~l~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++||+++++.. |||+++|++|+++..++.
T Consensus 196 i~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 196 VVLHDLNLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred EEECCHHHHHHhcCEEEEEECCEEEeeCCH
Confidence 99999999986 999999999999987764
No 248
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=4.7e-21 Score=170.85 Aligned_cols=98 Identities=29% Similarity=0.486 Sum_probs=87.8
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecC
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~ 119 (277)
..|+.+++.. ..++++..||||||||++|||||+.+| ++|||||||++||+..++.+++.++++++ +.|+|+|||+
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 4678888864 578899999999999999999999998 59999999999999999999999999865 4588889999
Q ss_pred cchhccCceEEEe------eCcEEEEec
Q psy18009 120 LSTIIHADEILVM------HAGEIVERG 141 (277)
Q Consensus 120 l~ev~~~Drv~vL------~dG~iv~~g 141 (277)
++++..|||+++| ++|++++.|
T Consensus 199 ~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 199 EDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9987569999999 899998764
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=172.81 Aligned_cols=101 Identities=30% Similarity=0.399 Sum_probs=89.8
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. -..++.+..||+|||||++||||++.+|++|||||||++||+.++..+.+.|+++.++.|+|++||+
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~ 205 (251)
T PRK14270 126 WALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205 (251)
T ss_pred HHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 356677652 2356788999999999999999999999999999999999999999999999998776788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..++..
T Consensus 206 ~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 206 MQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999886 9999999999999887654
No 250
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.6e-21 Score=176.13 Aligned_cols=101 Identities=34% Similarity=0.502 Sum_probs=92.4
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++++..||+||+||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++||+++
T Consensus 126 ~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 126 DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 468888988778889999999999999999999999999999999999999999999999999865 458888999999
Q ss_pred hhccCceEEEeeCcEEEEecCce
Q psy18009 122 TIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
++..|||+++|++|++++.|+..
T Consensus 206 ~~~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 206 EANMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHhCCEEEEEECCEEEEeCCHH
Confidence 98669999999999999887653
No 251
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=172.28 Aligned_cols=100 Identities=34% Similarity=0.467 Sum_probs=87.9
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. ...++++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.++.|+|++||++
T Consensus 126 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14240 126 SLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 34555542 23467889999999999999999999999999999999999999999999999997667889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 206 ~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (250)
T PRK14240 206 QQASRISDKTAFFLNGEIVEFGDTV 230 (250)
T ss_pred HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999877643
No 252
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.85 E-value=1.6e-20 Score=173.08 Aligned_cols=83 Identities=33% Similarity=0.565 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 140 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~ 140 (277)
||+|||||++|||||+.+|++|||||||++||+..++.+++. ++.++++.++|++||+++++..||++++|++|+++..
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 899999999999999999999999999999999999999885 4666666789999999999866999999999999988
Q ss_pred cCce
Q psy18009 141 GSLF 144 (277)
Q Consensus 141 g~~~ 144 (277)
|+..
T Consensus 240 g~~~ 243 (282)
T cd03291 240 GTFS 243 (282)
T ss_pred CCHH
Confidence 7754
No 253
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=174.56 Aligned_cols=101 Identities=27% Similarity=0.438 Sum_probs=90.2
Q ss_pred HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++.- ..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++.++.|+|++||+
T Consensus 142 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~ 221 (267)
T PRK14235 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHS 221 (267)
T ss_pred HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 4677778742 356788999999999999999999999999999999999999999999999999776788999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 222 ~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 222 MQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999976 9999999999999877643
No 254
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=173.54 Aligned_cols=100 Identities=29% Similarity=0.421 Sum_probs=88.8
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+||||||+|||||+.+|++|||||||++||+.++..+.++|++++++.|+|++||++
T Consensus 128 ~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~ 207 (258)
T PRK14241 128 SLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207 (258)
T ss_pred HHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46667762 24577889999999999999999999999999999999999999999999999997667889999999
Q ss_pred chhcc-CceEEEee------CcEEEEecCce
Q psy18009 121 STIIH-ADEILVMH------AGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~------dG~iv~~g~~~ 144 (277)
+++.. |||+++|+ +|++++.|+..
T Consensus 208 ~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 208 QQAARVSDQTAFFNLEATGKPGRLVEIDDTE 238 (258)
T ss_pred HHHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence 99986 99999997 79999887654
No 255
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.4e-21 Score=171.42 Aligned_cols=100 Identities=34% Similarity=0.531 Sum_probs=91.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
++++.+++.-..++++..||+||+||++||||++.+|+++||||||++||+.+++.+.+.++++.. +.|+|++||+++
T Consensus 112 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 112 EIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred HHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 467888888778889999999999999999999999999999999999999999999999999865 568889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. |||+++|++|+++..++.
T Consensus 192 ~~~~~~d~i~~l~~G~i~~~~~~ 214 (235)
T cd03299 192 EAWALADKVAIMLNGKLIQVGKP 214 (235)
T ss_pred HHHHhCCEEEEEECCEEEEecCH
Confidence 9986 999999999999987764
No 256
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=5e-21 Score=172.61 Aligned_cols=102 Identities=26% Similarity=0.511 Sum_probs=92.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc-------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEE
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTI 114 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~-------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiI 114 (277)
.++++.+++.-..++.+..||+|||||++|||||+. +|++|||||||++||+..++.+.++|+++++ +.|+|
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi 187 (248)
T PRK03695 108 NEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV 187 (248)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 457888898777788999999999999999999997 6799999999999999999999999999875 46888
Q ss_pred EEecCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009 115 IVAHRLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 115 iIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++||+++++.. ||++++|++|+++..|+..
T Consensus 188 ~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 188 MSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999986 9999999999999877643
No 257
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.9e-21 Score=172.32 Aligned_cols=90 Identities=33% Similarity=0.477 Sum_probs=83.6
Q ss_pred cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH 133 (277)
Q Consensus 55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~ 133 (277)
.++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.++|+++.++.|+|++||+++++.. |||+++|+
T Consensus 142 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14255 142 LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFL 221 (252)
T ss_pred HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 46778899999999999999999999999999999999999999999999999766789999999999986 99999999
Q ss_pred CcEEEEecCce
Q psy18009 134 AGEIVERGSLF 144 (277)
Q Consensus 134 dG~iv~~g~~~ 144 (277)
+|+++..++..
T Consensus 222 ~G~i~~~~~~~ 232 (252)
T PRK14255 222 TGNLIEFADTK 232 (252)
T ss_pred CCEEEEeCCHH
Confidence 99999877653
No 258
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.9e-21 Score=174.79 Aligned_cols=100 Identities=34% Similarity=0.539 Sum_probs=91.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ 121 (277)
++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+++.|+++++. .|+|++||+++
T Consensus 125 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred HHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 4578888887788899999999999999999999999999999999999999999999999998653 58888999999
Q ss_pred hhccCceEEEeeCcEEEEecCc
Q psy18009 122 TIIHADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~ 143 (277)
++..||++++|++|+++..|+.
T Consensus 205 ~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 205 EAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHhhCCEEEEEECCEEEEecCH
Confidence 9866999999999999887764
No 259
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.5e-21 Score=171.72 Aligned_cols=99 Identities=30% Similarity=0.442 Sum_probs=87.6
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.++|+++.++.|+|++||++
T Consensus 125 ~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 204 (249)
T PRK14253 125 SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSM 204 (249)
T ss_pred HHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 34555552 23466788999999999999999999999999999999999999999999999997777899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. |||+++|++|+++..|+.
T Consensus 205 ~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 205 QQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99986 999999999999987764
No 260
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.3e-21 Score=170.45 Aligned_cols=100 Identities=36% Similarity=0.534 Sum_probs=91.4
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcc
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ 121 (277)
.+++.+++.-..++.+..||+||+||++|||||+.+|+++||||||++||+.+++.+.+.++++++ +.|+|++||+++
T Consensus 113 ~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467888887777888999999999999999999999999999999999999999999999999875 568999999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCc
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
++.. |||+++|++|+++..++.
T Consensus 193 ~~~~~~d~i~~l~~G~~~~~~~~ 215 (232)
T cd03300 193 EALTMSDRIAVMNKGKIQQIGTP 215 (232)
T ss_pred HHHHhcCEEEEEECCEEEecCCH
Confidence 9986 999999999999887654
No 261
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.5e-21 Score=189.22 Aligned_cols=101 Identities=22% Similarity=0.413 Sum_probs=91.9
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+...+.+.++|+++++ +.|+|++||++
T Consensus 390 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 390 ENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred HHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3578899996 568999999999999999999999999999999999999999999999999999865 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCc
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
+++.. |||+++|++|+++..++.
T Consensus 470 ~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 470 PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHhhCCEEEEEECCEEEEEecC
Confidence 99986 999999999999876543
No 262
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6e-21 Score=175.78 Aligned_cols=100 Identities=34% Similarity=0.469 Sum_probs=88.7
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||||||||++|||||+.+|++|||||||++||+...+.+.+.|+++..+.++|++||++
T Consensus 162 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~ 241 (286)
T PRK14275 162 SLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241 (286)
T ss_pred HHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 45556652 24567889999999999999999999999999999999999999999999999997667889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 242 ~~~~~~~d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 242 QQASRVSDYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887653
No 263
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.84 E-value=6.2e-21 Score=169.19 Aligned_cols=97 Identities=38% Similarity=0.623 Sum_probs=87.6
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc-ch
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL-ST 122 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l-~e 122 (277)
.|+.++++...++.+..||+||+||++|||||+.+|++|||||||++||+.++..+.+.++++++ +.|+|++||++ ++
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~ 206 (226)
T cd03234 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSD 206 (226)
T ss_pred HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Confidence 67778887667788999999999999999999999999999999999999999999999999865 45888899999 57
Q ss_pred hcc-CceEEEeeCcEEEEec
Q psy18009 123 IIH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g 141 (277)
+.. ||++++|++|++++.|
T Consensus 207 ~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 207 LFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCEEEEEeCCEEEecC
Confidence 876 9999999999998654
No 264
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.6e-21 Score=170.92 Aligned_cols=90 Identities=34% Similarity=0.505 Sum_probs=83.8
Q ss_pred cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH 133 (277)
Q Consensus 55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~ 133 (277)
.+.++..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||+++++.. |||+++|+
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14272 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFL 221 (252)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence 46778899999999999999999999999999999999999999999999999776788899999999986 99999999
Q ss_pred CcEEEEecCce
Q psy18009 134 AGEIVERGSLF 144 (277)
Q Consensus 134 dG~iv~~g~~~ 144 (277)
+|+++..|+..
T Consensus 222 ~G~i~~~~~~~ 232 (252)
T PRK14272 222 VGDLVEHGPTD 232 (252)
T ss_pred CCEEEEeCCHH
Confidence 99999887654
No 265
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.84 E-value=8.3e-21 Score=169.33 Aligned_cols=90 Identities=56% Similarity=0.811 Sum_probs=81.9
Q ss_pred ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 54 ~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
..+..+..||+||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++.++|++||+++++..||++++|+
T Consensus 132 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~ 211 (238)
T cd03249 132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQ 211 (238)
T ss_pred eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 34556788999999999999999999999999999999999999999999999875568889999999987799999999
Q ss_pred CcEEEEecCc
Q psy18009 134 AGEIVERGSL 143 (277)
Q Consensus 134 dG~iv~~g~~ 143 (277)
+|+++..++.
T Consensus 212 ~G~i~~~~~~ 221 (238)
T cd03249 212 NGQVVEQGTH 221 (238)
T ss_pred CCEEEEeCCH
Confidence 9999887654
No 266
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.84 E-value=5.1e-21 Score=200.03 Aligned_cols=97 Identities=29% Similarity=0.469 Sum_probs=87.9
Q ss_pred hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.|+.+|+. +..++++..|||||+|||+||++|+.+| ++|||||||++||+.+.+.|+++|+++++ +.|+|+|+|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 47778886 4579999999999999999999999997 99999999999999999999999999976 45888999999
Q ss_pred chhccCceEEEe------eCcEEEEec
Q psy18009 121 STIIHADEILVM------HAGEIVERG 141 (277)
Q Consensus 121 ~ev~~~Drv~vL------~dG~iv~~g 141 (277)
+++..||+|++| ++|+++..|
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g 578 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASG 578 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeecc
Confidence 998779999999 889998654
No 267
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.84 E-value=5e-21 Score=169.48 Aligned_cols=93 Identities=47% Similarity=0.754 Sum_probs=83.9
Q ss_pred hhccc--CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 45 ILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 45 vL~~l--~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.++.+ ++....++.+..||+||||||+|||||+.+|++|||||||++||+..++.+.+.++++.++.|+|++||++++
T Consensus 132 ~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 211 (226)
T cd03248 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211 (226)
T ss_pred HHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 35556 6666678889999999999999999999999999999999999999999999999998776788899999999
Q ss_pred hccCceEEEeeCcEE
Q psy18009 123 IIHADEILVMHAGEI 137 (277)
Q Consensus 123 v~~~Drv~vL~dG~i 137 (277)
+..||++++|++|++
T Consensus 212 ~~~~d~i~~l~~g~i 226 (226)
T cd03248 212 VERADQILVLDGGRI 226 (226)
T ss_pred HHhCCEEEEecCCcC
Confidence 866999999999964
No 268
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.2e-21 Score=171.06 Aligned_cols=100 Identities=38% Similarity=0.527 Sum_probs=88.6
Q ss_pred hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++.. ..++.+..||+|||||++|||||+.+|++|||||||++||+.++..+.+.|++++++.|+|++||++
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~ 205 (250)
T PRK14262 126 SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNI 205 (250)
T ss_pred HHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 455666532 2577888999999999999999999999999999999999999999999999997767888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 206 ~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 206 GQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99876 9999999999999887653
No 269
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=9.2e-21 Score=168.34 Aligned_cols=84 Identities=35% Similarity=0.505 Sum_probs=78.8
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
|||||||+++|||||+.+|++|+|||||.+|-|.-.+++++.|+++++. + ||+++.++...... +||.+||..|+++
T Consensus 137 LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999864 5 78889999999987 9999999999999
Q ss_pred EecCcee
Q psy18009 139 ERGSLFV 145 (277)
Q Consensus 139 ~~g~~~~ 145 (277)
.+|+...
T Consensus 217 ~~G~~~e 223 (237)
T COG0410 217 LSGTAAE 223 (237)
T ss_pred EecCHHH
Confidence 9987543
No 270
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.84 E-value=1e-20 Score=206.16 Aligned_cols=74 Identities=51% Similarity=0.785 Sum_probs=70.0
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhccCceEEEeeCc
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
||||||||++|||||+++|+|||||||||+||+...+.+.+.|+++.+ +.|+|+|||+++.+..||+|++|++|
T Consensus 580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999964 56999999999998779999999986
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5e-21 Score=193.53 Aligned_cols=102 Identities=28% Similarity=0.419 Sum_probs=93.0
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ +.|+|+|||++
T Consensus 445 ~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl 524 (623)
T PRK10261 445 WLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524 (623)
T ss_pred HHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578889995 457889999999999999999999999999999999999999999999999999965 45888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+++.. ||||++|++|++++.|+...
T Consensus 525 ~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 525 AVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99987 99999999999999887543
No 272
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.8e-21 Score=172.82 Aligned_cols=100 Identities=28% Similarity=0.386 Sum_probs=88.3
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++.++.|+|++||++
T Consensus 131 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~ 210 (264)
T PRK14243 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210 (264)
T ss_pred HHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45555552 23567888999999999999999999999999999999999999999999999997777899999999
Q ss_pred chhcc-CceEEEee---------CcEEEEecCce
Q psy18009 121 STIIH-ADEILVMH---------AGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~---------dG~iv~~g~~~ 144 (277)
+++.. |||+++|+ +|++++.|+..
T Consensus 211 ~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 211 QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred HHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 99986 99999998 79999887653
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=5.2e-21 Score=189.01 Aligned_cols=101 Identities=29% Similarity=0.450 Sum_probs=92.8
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++++ +.++|++||+++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 578889996 568999999999999999999999999999999999999999999999999999975 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++.. |||+++|++|+++..++..
T Consensus 465 ~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 465 EIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHhCCEEEEEECCEEEEEEccc
Confidence 9987 9999999999999877653
No 274
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.5e-21 Score=187.77 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=93.3
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++ +.|+|++||++
T Consensus 377 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 377 DRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred HHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 3578889994 568999999999999999999999999999999999999999999999999999976 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 457 ~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 457 PEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99986 9999999999999877654
No 275
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8e-21 Score=173.44 Aligned_cols=102 Identities=28% Similarity=0.466 Sum_probs=91.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++.-..++++..||||||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||+++
T Consensus 124 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred HHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3568889998778899999999999999999999999999999999999999999999999999875 458888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCcee
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++.. ||+++++ +|+++..|+...
T Consensus 204 ~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 204 SVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHhCCEEEEE-CCEEEeecCHHh
Confidence 9986 9999777 899998876543
No 276
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=5.4e-21 Score=189.51 Aligned_cols=101 Identities=30% Similarity=0.546 Sum_probs=92.0
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.++++|+++++ +.|+|+|||++
T Consensus 407 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 407 AVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 568888986 357889999999999999999999999999999999999999999999999999964 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|++++.|+..
T Consensus 487 ~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 487 HVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHhcCeEEEEECCEEEEEcCHH
Confidence 99986 9999999999999887653
No 277
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9e-21 Score=173.12 Aligned_cols=100 Identities=31% Similarity=0.425 Sum_probs=88.6
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+||||||+|||||+.+|++|||||||++||+.++..+.+.|++++++.|+|++||++
T Consensus 148 ~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~ 227 (272)
T PRK14236 148 SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNM 227 (272)
T ss_pred HHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCH
Confidence 45556663 13567889999999999999999999999999999999999999999999999997767889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 228 ~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 228 QQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHhhCCEEEEEECCEEEecCCHH
Confidence 99986 9999999999999877643
No 278
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.6e-21 Score=170.51 Aligned_cols=90 Identities=32% Similarity=0.448 Sum_probs=83.5
Q ss_pred cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEee
Q psy18009 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMH 133 (277)
Q Consensus 55 ~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~ 133 (277)
.++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.++|+++.++.|+|++||+++++.. ||++++|+
T Consensus 141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~ 220 (251)
T PRK14249 141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL 220 (251)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence 56778899999999999999999999999999999999999999999999999766789999999999987 99999999
Q ss_pred CcEEEEecCce
Q psy18009 134 AGEIVERGSLF 144 (277)
Q Consensus 134 dG~iv~~g~~~ 144 (277)
+|+++..++..
T Consensus 221 ~G~i~~~~~~~ 231 (251)
T PRK14249 221 TGDLVEYGRTG 231 (251)
T ss_pred CCeEEEeCCHH
Confidence 99999877653
No 279
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=9.3e-21 Score=173.61 Aligned_cols=102 Identities=30% Similarity=0.447 Sum_probs=92.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--Cc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCA--SR 111 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~---------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~ 111 (277)
..+|+.+++.-..++.+..||+||||||+|||||+ .+|++|||||||++||+.+++.+.++|+++.+ +.
T Consensus 127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 206 (272)
T PRK13547 127 WQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL 206 (272)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35788899987778899999999999999999999 59999999999999999999999999999865 45
Q ss_pred eEEEEecCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009 112 TTIIVAHRLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 112 tiIiIsH~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
|+|++||+++++.. ||++++|++|+++..++..
T Consensus 207 tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 207 GVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 88899999999986 9999999999999877643
No 280
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=172.13 Aligned_cols=100 Identities=29% Similarity=0.410 Sum_probs=89.2
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.++|+++.++.++|++||++
T Consensus 143 ~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 222 (267)
T PRK14237 143 SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNM 222 (267)
T ss_pred HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45666663 23577889999999999999999999999999999999999999999999999997667888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 223 ~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 223 QQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99976 9999999999999887754
No 281
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=1.2e-20 Score=169.74 Aligned_cols=101 Identities=26% Similarity=0.394 Sum_probs=89.2
Q ss_pred HhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
++|+.+++. -..++.+. .|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++.+ +.|+|++||++
T Consensus 132 ~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred HHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 467778885 34567776 5999999999999999999999999999999999999999999999865 56888999999
Q ss_pred chhcc--CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH--ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~--~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 212 ~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 212 RLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHhhhCCEEEEEeCCEEEEecChh
Confidence 99874 8999999999999887654
No 282
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=7.7e-21 Score=187.25 Aligned_cols=102 Identities=30% Similarity=0.523 Sum_probs=92.6
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.++|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+..++.+.++|+++.+ +.|+|++||++
T Consensus 376 ~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 376 SDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred HHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3578889994 568999999999999999999999999999999999999999999999999999975 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 456 ~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 456 PEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHhhCCEEEEEECCEEEEEeccc
Confidence 99986 9999999999998876643
No 283
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=171.19 Aligned_cols=102 Identities=29% Similarity=0.407 Sum_probs=90.0
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||+
T Consensus 129 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 208 (259)
T PRK14260 129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208 (259)
T ss_pred HHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356666662 3467788999999999999999999999999999999999999999999999999776799999999
Q ss_pred cchhcc-CceEEEee-----CcEEEEecCcee
Q psy18009 120 LSTIIH-ADEILVMH-----AGEIVERGSLFV 145 (277)
Q Consensus 120 l~ev~~-~Drv~vL~-----dG~iv~~g~~~~ 145 (277)
++++.. |||+++|+ +|+++..|+...
T Consensus 209 ~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 240 (259)
T PRK14260 209 MQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 (259)
T ss_pred HHHHHHhcCeEEEEeccCCCCceEEEeCCHHH
Confidence 999986 99999998 599998877543
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=8.1e-21 Score=186.84 Aligned_cols=100 Identities=23% Similarity=0.445 Sum_probs=91.0
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
..+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+++.++++++++++ +.|+|++||++
T Consensus 384 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 384 GSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred HHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 3578899996 357899999999999999999999999999999999999999999999999999865 45888899999
Q ss_pred chhcc-CceEEEeeCcEEEEecC
Q psy18009 121 STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+++.. |||+++|++|+++...+
T Consensus 464 ~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 464 AEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHhCCEEEEEECCEEEEEEc
Confidence 99986 99999999999987554
No 285
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1e-20 Score=170.58 Aligned_cols=100 Identities=31% Similarity=0.411 Sum_probs=88.5
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|+|++||++
T Consensus 129 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~ 208 (253)
T PRK14261 129 SLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNM 208 (253)
T ss_pred HHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCH
Confidence 45555552 23567888999999999999999999999999999999999999999999999997767899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|+++..|+..
T Consensus 209 ~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 209 QQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHhhCCEEEEEECCEEEEcCCHH
Confidence 99986 9999999999999877653
No 286
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.7e-21 Score=172.94 Aligned_cols=91 Identities=29% Similarity=0.399 Sum_probs=84.4
Q ss_pred ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEe
Q psy18009 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVM 132 (277)
Q Consensus 54 ~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL 132 (277)
..++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++.|+|++||+++++.. |||+++|
T Consensus 160 ~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 457788899999999999999999999999999999999999999999999999776788899999999986 9999999
Q ss_pred eCcEEEEecCce
Q psy18009 133 HAGEIVERGSLF 144 (277)
Q Consensus 133 ~dG~iv~~g~~~ 144 (277)
++|+++..|+..
T Consensus 240 ~~G~i~~~g~~~ 251 (271)
T PRK14238 240 LNGYVNEYDDTD 251 (271)
T ss_pred ECCEEEEeCCHH
Confidence 999999887653
No 287
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=172.93 Aligned_cols=101 Identities=28% Similarity=0.372 Sum_probs=88.6
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++++..||+||||||+|||||+.+|++|||||||++||+.+++.+.++|++++++.|+|++||++
T Consensus 141 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 141 SLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 35555542 23567888999999999999999999999999999999999999999999999997767889999999
Q ss_pred chhcc-CceEEEee---------CcEEEEecCcee
Q psy18009 121 STIIH-ADEILVMH---------AGEIVERGSLFV 145 (277)
Q Consensus 121 ~ev~~-~Drv~vL~---------dG~iv~~g~~~~ 145 (277)
+++.. |||+++|+ +|++++.|+...
T Consensus 221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 221 QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred HHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 99986 99999997 899998887643
No 288
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=1.1e-20 Score=172.45 Aligned_cols=103 Identities=28% Similarity=0.460 Sum_probs=92.2
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++++.+++. ...++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+
T Consensus 132 ~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 132 SEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred HHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 3567888885 457888999999999999999999999999999999999999999999999999865 4688899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCcee
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
++++.. ||++++|++|+++..|+...
T Consensus 212 ~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 212 LRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 999986 99999999999998876543
No 289
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=1.1e-20 Score=168.92 Aligned_cols=102 Identities=36% Similarity=0.519 Sum_probs=92.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||+||+||++|||||+.+|+++||||||++||+.+.+.+.+.++++++ ++|+|++||++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 112 EELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3567888887667888899999999999999999999999999999999999999999999999865 46899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|++++.++..
T Consensus 192 ~~~~~~~d~i~~l~~g~i~~~~~~~ 216 (237)
T TIGR00968 192 EEAMEVADRIVVMSNGKIEQIGSPD 216 (237)
T ss_pred HHHHhhcCEEEEEECCEEEEecCHH
Confidence 99886 9999999999999877643
No 290
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.7e-20 Score=165.16 Aligned_cols=97 Identities=31% Similarity=0.476 Sum_probs=84.4
Q ss_pred cCHHHHHHHHHHHHhcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEee
Q psy18009 62 LSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMH 133 (277)
Q Consensus 62 LSgGqrQrv~IAral~~------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~ 133 (277)
|||||||||.+||+|++ ++++|+||||||+||......++++.++++.+ +.++.|=|||+.... ||||++|.
T Consensus 136 LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~ 215 (259)
T COG4559 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH 215 (259)
T ss_pred cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee
Confidence 99999999999999985 45799999999999999999999999999765 577789999999875 99999999
Q ss_pred CcEEEEecCceeeehhcCCCCCchhHHHHHHhcc
Q psy18009 134 AGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRF 167 (277)
Q Consensus 134 dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl 167 (277)
+|++++.|++.+... .+.++..||.
T Consensus 216 ~Grv~a~g~p~~vlt---------~Etl~~vyg~ 240 (259)
T COG4559 216 QGRVIASGSPQDVLT---------DETLERVYGA 240 (259)
T ss_pred CCeEeecCCHHHhcC---------HHHHHHHhCC
Confidence 999999999865443 2455666665
No 291
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=1.5e-20 Score=168.47 Aligned_cols=101 Identities=26% Similarity=0.384 Sum_probs=86.3
Q ss_pred HhhcccCcc-cccCCeee-ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 44 AILKNISFT-VPAGKTLA-LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~-~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.+++.+++. ...++.+. .||+||||||+||||++.+|++|||||||++||+..++.+.+.++++++ ++|+|++||++
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 345666663 23445554 7999999999999999999999999999999999999999999999876 46888999999
Q ss_pred chhcc--CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH--ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~--~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|+++..|+..
T Consensus 206 ~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 206 RILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 99875 8999999999999877643
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=1.5e-20 Score=164.15 Aligned_cols=81 Identities=37% Similarity=0.596 Sum_probs=72.1
Q ss_pred CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH-HHHHHhc-CceEEEEecCcchhccCceEEEee
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS-ALNRVCA-SRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~-~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
++.+..||+|||||++|||||+.+|+++||||||++||+.+.+.+++ +++++.+ +.|+|++||+++++..||++++|+
T Consensus 122 ~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~ 201 (204)
T cd03250 122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLD 201 (204)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEe
Confidence 44567899999999999999999999999999999999999999998 5666654 468889999999887799999999
Q ss_pred CcE
Q psy18009 134 AGE 136 (277)
Q Consensus 134 dG~ 136 (277)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 984
No 293
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=172.56 Aligned_cols=100 Identities=33% Similarity=0.472 Sum_probs=89.3
Q ss_pred hhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++.- ..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+++.|++++++.|+|++||++
T Consensus 143 ~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 222 (276)
T PRK14271 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNL 222 (276)
T ss_pred HHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 466677642 2456788999999999999999999999999999999999999999999999997767899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..++..
T Consensus 223 ~~~~~~~dri~~l~~G~i~~~g~~~ 247 (276)
T PRK14271 223 AQAARISDRAALFFDGRLVEEGPTE 247 (276)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887754
No 294
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=171.77 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=86.2
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|++++++.|+|++||++
T Consensus 134 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~ 213 (269)
T PRK14259 134 SLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213 (269)
T ss_pred HHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46666552 23577888999999999999999999999999999999999999999999999997667889999999
Q ss_pred chhcc-CceEEEeeC-----------cEEEEecCc
Q psy18009 121 STIIH-ADEILVMHA-----------GEIVERGSL 143 (277)
Q Consensus 121 ~ev~~-~Drv~vL~d-----------G~iv~~g~~ 143 (277)
+++.. |||+++|++ |++++.|+.
T Consensus 214 ~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 214 QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred HHHHHhcCEEEEEeccccccccccccceEEEeCCH
Confidence 99986 999999997 556766654
No 295
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.3e-20 Score=196.71 Aligned_cols=98 Identities=29% Similarity=0.469 Sum_probs=87.1
Q ss_pred hhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCc
Q psy18009 45 ILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l 120 (277)
.|..+++.- ..++.+..|||||+|||+||++|+.+| ++|||||||++||+.+.+.|.++|+++++. .|+|+|+|++
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 356777763 478999999999999999999999986 899999999999999999999999999764 5888999999
Q ss_pred chhccCceEEEe------eCcEEEEecC
Q psy18009 121 STIIHADEILVM------HAGEIVERGS 142 (277)
Q Consensus 121 ~ev~~~Drv~vL------~dG~iv~~g~ 142 (277)
+++..||++++| ++|+++..|+
T Consensus 550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~g~ 577 (924)
T TIGR00630 550 ETIRAADYVIDIGPGAGIHGGEVVASGT 577 (924)
T ss_pred HHHhhCCEEEEecccccCCCCEEeeccC
Confidence 998779999999 8999986543
No 296
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=173.36 Aligned_cols=100 Identities=28% Similarity=0.457 Sum_probs=88.1
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. -..++++..||+||||||+|||||+.+|++|||||||++||+...+.+.++|+++++++|+|++||+
T Consensus 159 ~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~ 238 (285)
T PRK14254 159 ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238 (285)
T ss_pred HHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356667763 2457788999999999999999999999999999999999999999999999999776789999999
Q ss_pred cchhcc-CceEE-EeeCcEEEEecCc
Q psy18009 120 LSTIIH-ADEIL-VMHAGEIVERGSL 143 (277)
Q Consensus 120 l~ev~~-~Drv~-vL~dG~iv~~g~~ 143 (277)
++++.. |||++ +|++|+++..++.
T Consensus 239 ~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 239 MQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 999986 99975 5799999987764
No 297
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=168.72 Aligned_cols=100 Identities=31% Similarity=0.447 Sum_probs=88.8
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+.+...+.++|++++++.|+|++||++
T Consensus 126 ~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~ 205 (250)
T PRK14266 126 SLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205 (250)
T ss_pred HHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 45666652 22467788999999999999999999999999999999999999999999999997767899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++|+++..|+..
T Consensus 206 ~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 206 QQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHhhcCEEEEEECCeEEEeCCHH
Confidence 99987 9999999999999887754
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=6.1e-21 Score=180.78 Aligned_cols=105 Identities=30% Similarity=0.509 Sum_probs=95.1
Q ss_pred HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecC
Q psy18009 43 RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~ 119 (277)
.++|+.+|++. ..++++..+|||||||++||||++.+|++++||||||+||..-..++.++++.|.++ -+-++||||
T Consensus 407 ~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 407 IEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred HHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 45799999974 467889999999999999999999999999999999999999999999999999753 478899999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCceeee
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLFVSL 147 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~~~~ 147 (277)
|.-+.. ||+|+||++|+|++.|+....+
T Consensus 487 L~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 999997 9999999999999999865433
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=1.4e-20 Score=186.15 Aligned_cols=100 Identities=34% Similarity=0.523 Sum_probs=90.5
Q ss_pred HhhcccCccc-----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009 44 AILKNISFTV-----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 116 (277)
Q Consensus 44 ~vL~~l~l~i-----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI 116 (277)
.+|+.+++.. ..++++..|||||||||+|||||+.+|++|||||||++||+..++.+.+.|+++++ +.|+|+|
T Consensus 405 ~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 484 (520)
T TIGR03269 405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV 484 (520)
T ss_pred HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 4688888864 35789999999999999999999999999999999999999999999999999864 4688899
Q ss_pred ecCcchhcc-CceEEEeeCcEEEEecCc
Q psy18009 117 AHRLSTIIH-ADEILVMHAGEIVERGSL 143 (277)
Q Consensus 117 sH~l~ev~~-~Drv~vL~dG~iv~~g~~ 143 (277)
||+++++.. |||+++|++|+++..|+.
T Consensus 485 sHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 485 SHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999986 999999999999887654
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=2.7e-20 Score=160.65 Aligned_cols=98 Identities=26% Similarity=0.418 Sum_probs=87.7
Q ss_pred hHHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEe
Q psy18009 42 ERAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVA 117 (277)
Q Consensus 42 ~~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~--p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIs 117 (277)
..++|+.+++.- ..++++..||+|||||++||||++.+ |+++||||||++||+.+.+.+.+.++++++ +.++|++|
T Consensus 67 q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 67 QLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred HHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 367899999974 47889999999999999999999999 999999999999999999999999999875 56888999
Q ss_pred cCcchhccCceEEEeeCcEEEE
Q psy18009 118 HRLSTIIHADEILVMHAGEIVE 139 (277)
Q Consensus 118 H~l~ev~~~Drv~vL~dG~iv~ 139 (277)
|+++++..|||+++|++|....
T Consensus 147 H~~~~~~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 147 HNLDVLSSADWIIDFGPGSGKS 168 (176)
T ss_pred CCHHHHHhCCEEEEECCCCCCC
Confidence 9999875699999998765543
No 301
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.83 E-value=2.4e-20 Score=204.24 Aligned_cols=141 Identities=30% Similarity=0.462 Sum_probs=113.9
Q ss_pred ccHHHhhcccccccCCCCCccccc-cCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------ 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------ 61 (277)
+||.++++.+++...........+ ..+.|+++|++|+|+. .+.+|+++++++.+|+.++.
T Consensus 608 ~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~ 687 (1522)
T TIGR00957 608 KRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 687 (1522)
T ss_pred HHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578888876543211000111111 1247999999999974 35699999999999998763
Q ss_pred -------------------------------------------------------------------------cCHHHHH
Q psy18009 62 -------------------------------------------------------------------------LSGGEKQ 68 (277)
Q Consensus 62 -------------------------------------------------------------------------LSgGqrQ 68 (277)
|||||||
T Consensus 688 ~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq 767 (1522)
T TIGR00957 688 MDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767 (1522)
T ss_pred CccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH
Confidence 9999999
Q ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHH---HhcCceEEEEecCcchhccCceEEEeeCcEEEEecC
Q psy18009 69 RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR---VCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142 (277)
Q Consensus 69 rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~---l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~ 142 (277)
|++||||++.+|+++|||||||+||+...+.+++.+.. +.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCC
Confidence 99999999999999999999999999999999999864 345679999999999887899999999999997765
No 302
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=184.52 Aligned_cols=100 Identities=26% Similarity=0.453 Sum_probs=90.3
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
..+++.+++. -..++++..|||||||||+||||++.+|+||||||||++||+..++.++++++++.+ ++|+|++||++
T Consensus 372 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 372 QWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred HHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 3567888885 357999999999999999999999999999999999999999999999999999865 56899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecC
Q psy18009 121 STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+++.. |||+++|++|+++..++
T Consensus 452 ~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 452 PELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHhhCCEEEEEECCEEEEEEc
Confidence 99986 99999999999986544
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=169.31 Aligned_cols=101 Identities=30% Similarity=0.414 Sum_probs=88.4
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEec
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH 118 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH 118 (277)
+++.+++. -..++.+..||+|||||++|||||+.+|++|||||||++||+...+.+++.|+++++ +.|+|++||
T Consensus 130 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH 209 (261)
T PRK14258 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209 (261)
T ss_pred HHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45666652 235778899999999999999999999999999999999999999999999999853 568889999
Q ss_pred Ccchhcc-CceEEEeeC-----cEEEEecCcee
Q psy18009 119 RLSTIIH-ADEILVMHA-----GEIVERGSLFV 145 (277)
Q Consensus 119 ~l~ev~~-~Drv~vL~d-----G~iv~~g~~~~ 145 (277)
+++++.. |||+++|++ |+++..|+...
T Consensus 210 ~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 210 NLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred CHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 9999986 999999999 99998876543
No 304
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=169.31 Aligned_cols=101 Identities=30% Similarity=0.424 Sum_probs=89.1
Q ss_pred HhhcccCccc----ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTV----PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i----~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++.- ..++.+..||+||+||++|||||+.+|++|||||||++||+..++.+++.|++++++.|+|++||+
T Consensus 128 ~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~ 207 (261)
T PRK14263 128 HALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207 (261)
T ss_pred HHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4677777632 345677889999999999999999999999999999999999999999999999766688889999
Q ss_pred cchhcc-CceEEEee--------CcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMH--------AGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~--------dG~iv~~g~~~ 144 (277)
++++.. |||+++|+ +|++++.|+..
T Consensus 208 ~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 208 MQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred HHHHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence 999986 99999995 89999887754
No 305
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=169.41 Aligned_cols=100 Identities=34% Similarity=0.466 Sum_probs=88.0
Q ss_pred hhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 45 ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
+++.+++. -..++.+..||+||+||++|||||+.+|++|||||||++||+.+.+.+.+.|++++++.|+|++||++
T Consensus 141 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~ 220 (265)
T PRK14252 141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220 (265)
T ss_pred HHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCH
Confidence 45555542 23467788999999999999999999999999999999999999999999999997767899999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. |||+++|++|+++..|+..
T Consensus 221 ~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 221 QQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99986 9999999999999887653
No 306
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=1.7e-20 Score=169.53 Aligned_cols=94 Identities=32% Similarity=0.427 Sum_probs=85.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++....++.+..|||||||||+|||||+.+|+++||||||++||+..+..+.++|+++.+ +.++|++||++
T Consensus 97 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~ 176 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176 (246)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3467888887777889999999999999999999999999999999999999999999999999864 46889999999
Q ss_pred chhcc-CceEEEeeCcE
Q psy18009 121 STIIH-ADEILVMHAGE 136 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~ 136 (277)
+++.. |||+++|+++.
T Consensus 177 ~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 177 IMIDYLADRLIVFEGEP 193 (246)
T ss_pred HHHHHhCCEEEEEcCCC
Confidence 99986 99999996643
No 307
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=2.4e-20 Score=168.92 Aligned_cols=101 Identities=29% Similarity=0.461 Sum_probs=90.2
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
..+++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+..++.+++.|+++.+ +.|+|++||++
T Consensus 102 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 102 LPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred HHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4568888887777888999999999999999999999999999999999999999999999999865 46888999999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+++.. ||++++|++ +++..|+..
T Consensus 182 ~~i~~~~d~i~~l~~-~i~~~g~~~ 205 (251)
T PRK09544 182 HLVMAKTDEVLCLNH-HICCSGTPE 205 (251)
T ss_pred HHHHHhCCEEEEECC-ceEeeCCHH
Confidence 99986 999999965 688777653
No 308
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.82 E-value=3.1e-20 Score=179.81 Aligned_cols=143 Identities=35% Similarity=0.517 Sum_probs=120.5
Q ss_pred ccHHHhhcccccccCCCCCccccccCceEEEeeeeeeeCc-hHHhhcccCcccccCCeeec-------------------
Q psy18009 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLAL------------------- 61 (277)
Q Consensus 2 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~-~~~vL~~l~l~i~~~~~v~~------------------- 61 (277)
.|+.+++.+.|...+. -+++--.|.+.++++++-=|+ .+.++++++|.+.+|+-++.
T Consensus 310 ~Rl~~lL~~~p~~~~~---m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 310 KRLNELLAELPAAAER---MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred HHHHHHHHhCccccCC---CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc
Confidence 4677778887765432 112223688999999996443 36799999999999997764
Q ss_pred --------------------------------------------------------------------------------
Q psy18009 62 -------------------------------------------------------------------------------- 61 (277)
Q Consensus 62 -------------------------------------------------------------------------------- 61 (277)
T Consensus 387 ~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~i 466 (580)
T COG4618 387 PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466 (580)
T ss_pred ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence
Q ss_pred ------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeC
Q psy18009 62 ------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 62 ------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
||||||||+++||||+.+|.+++||||-|+||.+....+.+.|..+++ ++++|+|+||.+.+..+|+|++|++
T Consensus 467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~ 546 (580)
T COG4618 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD 546 (580)
T ss_pred CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC
Confidence 999999999999999999999999999999999999999999999976 4688889999999989999999999
Q ss_pred cEEEEecCceeee
Q psy18009 135 GEIVERGSLFVSL 147 (277)
Q Consensus 135 G~iv~~g~~~~~~ 147 (277)
|++...|+..+..
T Consensus 547 G~~~~FG~r~eVL 559 (580)
T COG4618 547 GRIAAFGPREEVL 559 (580)
T ss_pred ChHHhcCCHHHHH
Confidence 9999888765433
No 309
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=2.8e-20 Score=189.21 Aligned_cols=70 Identities=39% Similarity=0.488 Sum_probs=66.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEee
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMH 133 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~ 133 (277)
||||||||++||||++.+|+++||||||++||+...+.+.+.+++. +.|+|+|||+++.+..||++++|+
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 8999999999999999999999999999999999999999998874 678999999999987799999996
No 310
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=167.51 Aligned_cols=101 Identities=30% Similarity=0.461 Sum_probs=90.0
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++. -..++.+..||+|||||++|||||+.+|+++||||||++||+.+.+.+.+.+.++++++|+|++||+
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~ 211 (257)
T PRK14246 132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211 (257)
T ss_pred HHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 356667774 2356788999999999999999999999999999999999999999999999999777899999999
Q ss_pred cchhcc-CceEEEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+++|++|+++..|+..
T Consensus 212 ~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 212 PQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999976 9999999999999887654
No 311
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.82 E-value=3.2e-20 Score=163.97 Aligned_cols=95 Identities=38% Similarity=0.552 Sum_probs=85.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++.+++.-..++.+..||+|||||++|||||+.+|++|||||||++||+.+++.+.+.++++.+ ++|+|++||++
T Consensus 123 ~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 123 RAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4567888887777888999999999999999999999999999999999999999999999999864 56899999999
Q ss_pred chhccCceEEEeeCcEE
Q psy18009 121 STIIHADEILVMHAGEI 137 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~i 137 (277)
+....||++++|++|++
T Consensus 203 ~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHhhCCEEEEEECCEE
Confidence 85434999999999986
No 312
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.82 E-value=2.3e-20 Score=165.73 Aligned_cols=101 Identities=31% Similarity=0.474 Sum_probs=87.9
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecC
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~ 119 (277)
.++++.+++. ...++++..||+||+||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 118 LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3578888984 457889999999999999999999999999999999999999999999999999864 4588899999
Q ss_pred cchhccCceEEEee-CcEEEEecCc
Q psy18009 120 LSTIIHADEILVMH-AGEIVERGSL 143 (277)
Q Consensus 120 l~ev~~~Drv~vL~-dG~iv~~g~~ 143 (277)
++++..|||+++|+ ++..+++|.+
T Consensus 198 ~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 198 KDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred hHHHHhCCEEEEEecccchHhhhhh
Confidence 99986699999995 5555555554
No 313
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.82 E-value=4.5e-20 Score=168.48 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=89.9
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchh
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev 123 (277)
+++.+++....+..+..||+||+||++||||++.+|++|||||||++||+...+.+.+.+.++.+ ++|+|++||+++++
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i 206 (264)
T PRK13546 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQV 206 (264)
T ss_pred HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 46666777667788999999999999999999999999999999999999999999999999865 46888999999999
Q ss_pred cc-CceEEEeeCcEEEEecCce
Q psy18009 124 IH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
.. ||++++|++|+++..|+..
T Consensus 207 ~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 207 RQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHcCEEEEEECCEEEEeCCHH
Confidence 86 9999999999999877643
No 314
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.9e-20 Score=154.60 Aligned_cols=75 Identities=43% Similarity=0.668 Sum_probs=70.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc-CceEEEeeCcE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGE 136 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~-~Drv~vL~dG~ 136 (277)
||+||+||++|||+++.+|+++||||||++||+.+...+.+.+.++.+. .+++++||+++++.. ||++++|.+|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999999998664 688889999999987 89999999874
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=5.5e-20 Score=158.90 Aligned_cols=77 Identities=38% Similarity=0.534 Sum_probs=71.2
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-C-ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-S-RTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~-~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
||+|||||++||||++.+|+++||||||++||+.+++.+.+.++++.+ + .++|++||+++++.. ||++++|+++-.+
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999999999999999999999999999864 3 688899999999986 9999999887543
No 316
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.6e-20 Score=168.25 Aligned_cols=100 Identities=23% Similarity=0.406 Sum_probs=86.8
Q ss_pred hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcchhc
Q psy18009 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTII 124 (277)
Q Consensus 46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ev~ 124 (277)
|+++++.....+++..||-|.+|++-+..+++.+|+++|||||+|+|||-+.+.|-+.+.++++.| |+|++||+|+.+.
T Consensus 115 Ler~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vE 194 (300)
T COG4152 115 LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVE 194 (300)
T ss_pred HHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHH
Confidence 444444444444445599999999999999999999999999999999999999999999998765 7788999999999
Q ss_pred c-CceEEEeeCcEEEEecCcee
Q psy18009 125 H-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 125 ~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
. ||++++|++|+.|-.|+...
T Consensus 195 eLCD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 195 ELCDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred HHhhhhheecCCceEEeccHHH
Confidence 7 99999999999998887643
No 317
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=7.2e-20 Score=167.16 Aligned_cols=99 Identities=29% Similarity=0.501 Sum_probs=89.9
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~---p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH 118 (277)
.+|+.+++.- ..++++..|||||+||++||++|+.+ |+++||||||++||+...+.+.+.++++.+ +.|+|+|||
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4677888864 57999999999999999999999996 799999999999999999999999999876 468889999
Q ss_pred CcchhccCceEEEe------eCcEEEEecC
Q psy18009 119 RLSTIIHADEILVM------HAGEIVERGS 142 (277)
Q Consensus 119 ~l~ev~~~Drv~vL------~dG~iv~~g~ 142 (277)
+++++..||++++| ++|++++.|+
T Consensus 231 ~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 231 NLDVIKCADWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CHHHHHhCCEEEEecCCcCCCCCEEEEeCC
Confidence 99988779999999 8999998775
No 318
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.4e-20 Score=170.47 Aligned_cols=101 Identities=28% Similarity=0.451 Sum_probs=88.3
Q ss_pred HhhcccCcc----cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~----i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
.+++.+++. -..++.+..||+||||||+|||||+.+|++|||||||++||+.....+.++|++++++.|+|++||+
T Consensus 179 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~ 258 (305)
T PRK14264 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258 (305)
T ss_pred HHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 356666662 2346778999999999999999999999999999999999999999999999999777788899999
Q ss_pred cchhcc-CceE-EEeeCcEEEEecCce
Q psy18009 120 LSTIIH-ADEI-LVMHAGEIVERGSLF 144 (277)
Q Consensus 120 l~ev~~-~Drv-~vL~dG~iv~~g~~~ 144 (277)
++++.. |||+ ++|++|+++..|+..
T Consensus 259 ~~~i~~~~d~i~~~l~~G~i~~~g~~~ 285 (305)
T PRK14264 259 MQQAARISDQTAVFLTGGELVEYDDTD 285 (305)
T ss_pred HHHHHHhcCEEEEEecCCEEEEeCCHH
Confidence 999986 9996 578999999887653
No 319
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.81 E-value=6.5e-20 Score=180.94 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=90.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+++.+++....++++..||||||||++|||||+.+|++|||||||++||+..++.+++.|+++++ ++|+|++||++++
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 357778887777889999999999999999999999999999999999999999999999999865 4688899999999
Q ss_pred hcc-CceEEEeeCcEEEEecC
Q psy18009 123 IIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~ 142 (277)
+.. |||+++|++|+++..|+
T Consensus 206 i~~l~DrIivL~~GkIv~~G~ 226 (549)
T PRK13545 206 VKSFCTKALWLHYGQVKEYGD 226 (549)
T ss_pred HHHhCCEEEEEECCEEEEECC
Confidence 986 99999999999998775
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.81 E-value=6.6e-20 Score=162.01 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=85.9
Q ss_pred cccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-
Q psy18009 47 KNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH- 125 (277)
Q Consensus 47 ~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~- 125 (277)
+.++++...++++..||+|||||++||||++.+|+++||||||+++|+.+.+.+.+.+.+..++.++|++||+++++..
T Consensus 90 ~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~ 169 (213)
T PRK15177 90 QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEH 169 (213)
T ss_pred HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHh
Confidence 4455655567889999999999999999999999999999999999999999999988654445678889999999986
Q ss_pred CceEEEeeCcEEEEecCce
Q psy18009 126 ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 126 ~Drv~vL~dG~iv~~g~~~ 144 (277)
||++++|++|+++..++..
T Consensus 170 ~d~i~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 170 CHAFGVLLHGKITMCEDLA 188 (213)
T ss_pred cCeeEEEECCeEEEeCCHH
Confidence 9999999999999877653
No 321
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.81 E-value=6.9e-20 Score=159.66 Aligned_cols=90 Identities=33% Similarity=0.547 Sum_probs=81.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++
T Consensus 116 ~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 116 KEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3468888988778889999999999999999999999999999999999999999999999999865 468888999998
Q ss_pred hhccCceEEEe
Q psy18009 122 TIIHADEILVM 132 (277)
Q Consensus 122 ev~~~Drv~vL 132 (277)
.+..||++++|
T Consensus 196 ~~~~~d~i~~l 206 (206)
T TIGR03608 196 VAKQADRVIEL 206 (206)
T ss_pred HHhhcCEEEeC
Confidence 66559999875
No 322
>KOG0927|consensus
Probab=99.81 E-value=1.9e-19 Score=175.27 Aligned_cols=76 Identities=29% Similarity=0.452 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
||||+|.|+++||+|..+|.+|+|||||++||..+..-|-+.|.+.... ++|+++|.-+.+.. |..|+.|+.++.+
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccccee
Confidence 9999999999999999999999999999999999999999888876433 78889999999987 9999999999965
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.81 E-value=6.3e-20 Score=180.12 Aligned_cols=98 Identities=19% Similarity=0.317 Sum_probs=89.0
Q ss_pred HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecC
Q psy18009 43 RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHR 119 (277)
Q Consensus 43 ~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~ 119 (277)
.++++.+++.. ..++++..|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++++++ + |+|++||+
T Consensus 382 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 382 QQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred HHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 35788899976 678899999999999999999999999999999999999999999999999999754 3 58889999
Q ss_pred cchhc-c-CceEEEeeCcEEEEe
Q psy18009 120 LSTII-H-ADEILVMHAGEIVER 140 (277)
Q Consensus 120 l~ev~-~-~Drv~vL~dG~iv~~ 140 (277)
++++. . |||+++|++|+++..
T Consensus 462 ~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 462 AEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhhhheeEEEecCCceEEe
Confidence 99996 3 899999999998764
No 324
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.8e-20 Score=169.45 Aligned_cols=102 Identities=33% Similarity=0.541 Sum_probs=94.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l 120 (277)
..+.+-+|+....++++..|||||||||+|+|||+..|++|+||||.|+||..-+.+++..+++|.++ --++++||.+
T Consensus 110 d~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~ 189 (352)
T COG4148 110 DQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189 (352)
T ss_pred HHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH
Confidence 45788899999999999999999999999999999999999999999999999999999999999875 3678899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+|+.. ||+|++|++|++.+.|...
T Consensus 190 ~Ev~RLAd~vV~le~GkV~A~g~~e 214 (352)
T COG4148 190 DEVLRLADRVVVLENGKVKASGPLE 214 (352)
T ss_pred HHHHhhhheEEEecCCeEEecCcHH
Confidence 99997 9999999999999988743
No 325
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=2.8e-19 Score=194.98 Aligned_cols=98 Identities=29% Similarity=0.464 Sum_probs=85.3
Q ss_pred hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCc
Q psy18009 45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP--QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120 (277)
Q Consensus 45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p--~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l 120 (277)
.|..+++. +..++.+..|||||+|||+||+||+.+| ++|||||||++||+.+.+.|+++|+++++ +.|+|+|+|++
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 35667887 3478999999999999999999999999 89999999999999999999999999976 45888999999
Q ss_pred chhccCceEEEee------CcEEEEecC
Q psy18009 121 STIIHADEILVMH------AGEIVERGS 142 (277)
Q Consensus 121 ~ev~~~Drv~vL~------dG~iv~~g~ 142 (277)
+.+..|||+++|+ +|+++..|+
T Consensus 539 ~vi~~aDrVi~L~pGag~~gG~Iv~~G~ 566 (1809)
T PRK00635 539 QMISLADRIIDIGPGAGIFGGEVLFNGS 566 (1809)
T ss_pred HHHHhCCEEEEEcCCcccCCCEEEEecC
Confidence 8443499999996 778876543
No 326
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.2e-19 Score=159.09 Aligned_cols=81 Identities=35% Similarity=0.575 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--c-eEEEEecCcchhcc-CceEEEeeCcEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--R-TTIIVAHRLSTIIH-ADEILVMHAGEI 137 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~-tiIiIsH~l~ev~~-~Drv~vL~dG~i 137 (277)
||-||||||-|||||+.+|++|||||||++||...++.+.+.+.++... + ++|+|||+.+|+.. .++++.|++|++
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v 251 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEV 251 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCce
Confidence 9999999999999999999999999999999999999999999999753 3 78889999999986 899999999999
Q ss_pred EEecC
Q psy18009 138 VERGS 142 (277)
Q Consensus 138 v~~g~ 142 (277)
+..|.
T Consensus 252 ~~~g~ 256 (257)
T COG1119 252 VAQGK 256 (257)
T ss_pred eeccc
Confidence 87653
No 327
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.7e-19 Score=157.24 Aligned_cols=95 Identities=34% Similarity=0.532 Sum_probs=79.2
Q ss_pred cCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-
Q psy18009 49 ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH- 125 (277)
Q Consensus 49 l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~- 125 (277)
+|+.-..++.+-.|||||||||.|||||+.+|++|+||||+++||.-+++++.+++-++++ +..+++|||+++|...
T Consensus 120 VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred hCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 3333333334444999999999999999999999999999999999999999999999875 3578889999999876
Q ss_pred CceEEEee--CcEEEEecCc
Q psy18009 126 ADEILVMH--AGEIVERGSL 143 (277)
Q Consensus 126 ~Drv~vL~--dG~iv~~g~~ 143 (277)
++|++||. .|++++.-++
T Consensus 200 atrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 200 ATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hheeEEecCCCceeeEecCC
Confidence 99999997 6888875443
No 328
>PLN03073 ABC transporter F family; Provisional
Probab=99.80 E-value=2.2e-19 Score=184.15 Aligned_cols=113 Identities=31% Similarity=0.530 Sum_probs=100.8
Q ss_pred ceEEEeeeeeeeCchHHhhcccCcccccCCeeec----------------------------------------------
Q psy18009 28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------------------------- 61 (277)
Q Consensus 28 g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~---------------------------------------------- 61 (277)
.+++++|++|+|++...+|++++|++.+|+.++.
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~ 586 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLD 586 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCC
Confidence 4799999999996444689999999999997753
Q ss_pred -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009 62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100 (277)
Q Consensus 62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l 100 (277)
|||||||||+|||||+.+|++|||||||++||+.+.+.+
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l 666 (718)
T PLN03073 587 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL 666 (718)
T ss_pred cchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEE-EecC
Q psy18009 101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIV-ERGS 142 (277)
Q Consensus 101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv-~~g~ 142 (277)
.+.+.+. ++|+|+|||+++++.. |||+++|++|+++ ..|+
T Consensus 667 ~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~ 708 (718)
T PLN03073 667 IQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGT 708 (718)
T ss_pred HHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 8888775 4699999999999986 9999999999997 4443
No 329
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=1.9e-19 Score=158.65 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=83.3
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++.-..++++..||+|||||++||||++.+|++|||||||++||+..++.+.+.++++++ ++|+|++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 3467888887667889999999999999999999999999999999999999999999999998865 468888999999
Q ss_pred hhcc-CceEEEeeC
Q psy18009 122 TIIH-ADEILVMHA 134 (277)
Q Consensus 122 ev~~-~Drv~vL~d 134 (277)
++.. |||+++|+.
T Consensus 199 ~~~~~~~~i~~l~~ 212 (214)
T PRK13543 199 AAPPVRTRMLTLEA 212 (214)
T ss_pred hhhhhcceEEEEee
Confidence 9986 999999864
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.80 E-value=1.5e-19 Score=181.81 Aligned_cols=99 Identities=32% Similarity=0.487 Sum_probs=89.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++|+.+++.-..++++..|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++.+ ++|+|+|||++
T Consensus 435 ~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4578888988778999999999999999999999999999999999999999999999999999965 46889999999
Q ss_pred chhcc-CceEEEeeCcEEEEecC
Q psy18009 121 STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+++.. |||+++|+ |++...|.
T Consensus 515 ~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEEEEc-Ccceeeee
Confidence 99986 99999995 47766555
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-19 Score=178.70 Aligned_cols=99 Identities=26% Similarity=0.472 Sum_probs=89.1
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
..+|+.+++. ...++++..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++ ++|+|++||+++
T Consensus 419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~ 496 (530)
T PRK15064 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDRE 496 (530)
T ss_pred HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 3578888884 4678899999999999999999999999999999999999999999999999987 468999999999
Q ss_pred hhcc-CceEEEeeCcEEE-EecCc
Q psy18009 122 TIIH-ADEILVMHAGEIV-ERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv-~~g~~ 143 (277)
++.. |||+++|++|+++ ..|+.
T Consensus 497 ~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 497 FVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHhCCEEEEEECCeEEEcCCCH
Confidence 9986 9999999999997 55543
No 332
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=2.6e-19 Score=195.26 Aligned_cols=98 Identities=32% Similarity=0.507 Sum_probs=87.1
Q ss_pred hhcccCccc-ccCCeeeccCHHHHHHHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecC
Q psy18009 45 ILKNISFTV-PAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR 119 (277)
Q Consensus 45 vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~---~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~ 119 (277)
+|+.+++.- ..++++..|||||+||++||+||+ .+|++|||||||++||+.+.+.++++|+++++. .|+|+|||+
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd 871 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN 871 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 577788864 479999999999999999999997 699999999999999999999999999999764 588889999
Q ss_pred cchhccCceEEEee------CcEEEEecC
Q psy18009 120 LSTIIHADEILVMH------AGEIVERGS 142 (277)
Q Consensus 120 l~ev~~~Drv~vL~------dG~iv~~g~ 142 (277)
++++..||++++|+ +|+++..|+
T Consensus 872 l~~i~~aDrVi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 872 MHVVKVADYVLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred HHHHHhCCEEEEEccCCCCCCCEEEEeCC
Confidence 99995599999996 788876553
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=2.2e-19 Score=163.21 Aligned_cols=96 Identities=27% Similarity=0.394 Sum_probs=86.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++.+..||+|||||++||||++.+|+++||||||++||+.....+++.++++++ +.++|++||+++
T Consensus 121 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~ 200 (255)
T cd03236 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA 200 (255)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4578888987777889999999999999999999999999999999999999999999999999975 468889999999
Q ss_pred hhcc-CceEEEeeCcEEEE
Q psy18009 122 TIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~ 139 (277)
++.. ||++++| +|++.+
T Consensus 201 ~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 201 VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred HHHHhCCEEEEE-CCCCCc
Confidence 9986 9999999 455644
No 334
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=3.5e-19 Score=155.82 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=81.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++.-..++++..||+|||||++||||++.+|+++||||||++||+.+++.+.++|+++++ ++|+|++||+++
T Consensus 111 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 111 WEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 3578889997667889999999999999999999999999999999999999999999999999865 468889999999
Q ss_pred hhcc-CceEEEe
Q psy18009 122 TIIH-ADEILVM 132 (277)
Q Consensus 122 ev~~-~Drv~vL 132 (277)
++.. .+|++++
T Consensus 191 ~i~~~~~~~~~~ 202 (204)
T PRK13538 191 PVASDKVRKLRL 202 (204)
T ss_pred hhccCCceEEec
Confidence 9976 6788776
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.9e-19 Score=157.03 Aligned_cols=126 Identities=26% Similarity=0.395 Sum_probs=101.8
Q ss_pred hhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcch
Q psy18009 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLST 122 (277)
Q Consensus 45 vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~e 122 (277)
+++-++++-..++....||||||||.-||..++++.++++||||..+||....-.+++.++++.+ ++|++++-|+...
T Consensus 119 aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 119 AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred HHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH
Confidence 44455555555555556999999999999999999999999999999999999999999999976 4699999999999
Q ss_pred hcc-CceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHHhccccCceeEEEECCEec
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~ 182 (277)
... +|.|+-|++|+++..|++..... ++.++-|+-. +-.-..++|+.+
T Consensus 199 AS~YsD~IVAlK~G~vv~~G~~~eii~---------~~~L~eiydm---~i~v~~i~g~kI 247 (252)
T COG4604 199 ASCYSDHIVALKNGKVVKQGSPDEIIQ---------PEILSEIYDM---DIPVEEINGKKI 247 (252)
T ss_pred HHhhhhheeeecCCEEEecCCHHHhcC---------HHHHHHHhcC---CceeEEeCCcEE
Confidence 986 99999999999999999866543 3455555543 334456666654
No 336
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.78 E-value=4.7e-19 Score=154.75 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=82.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.+.|+++++ ++|+|++||+..
T Consensus 107 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 107 EEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 4578888998777889999999999999999999999999999999999999999999999999865 568889999998
Q ss_pred hhcc-CceEEEe
Q psy18009 122 TIIH-ADEILVM 132 (277)
Q Consensus 122 ev~~-~Drv~vL 132 (277)
++.. |++++++
T Consensus 187 ~~~~~~~~~~~~ 198 (201)
T cd03231 187 GLSEAGARELDL 198 (201)
T ss_pred hhhhccceeEec
Confidence 8876 9999887
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.5e-19 Score=180.62 Aligned_cols=99 Identities=27% Similarity=0.464 Sum_probs=89.2
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
..+|+.++|. ...++++..|||||||||+||++|+.+|++|||||||++||+.+.+.+.+.|+++ ++|+|+|||+++
T Consensus 411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~ 488 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRH 488 (638)
T ss_pred HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence 3567888885 3578899999999999999999999999999999999999999999999999987 469999999999
Q ss_pred hhcc-CceEEEeeCcEEE-EecCc
Q psy18009 122 TIIH-ADEILVMHAGEIV-ERGSL 143 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv-~~g~~ 143 (277)
++.. |||+++|++|+++ ..|+.
T Consensus 489 ~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 489 LLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred HHHHhCCEEEEEECCEEEEcCCCH
Confidence 9986 9999999999997 55554
No 338
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=3.2e-19 Score=152.83 Aligned_cols=98 Identities=32% Similarity=0.454 Sum_probs=89.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-Cc-eEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SR-TTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~-tiIiIsH~l 120 (277)
+..|+.+|+.-....++++|||||||||+||||++..|++|+-||||.+||..+.+++.+++-.+.. .+ |.|++||+.
T Consensus 128 ~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 128 KALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 5678999999999999999999999999999999999999999999999999999999999988865 35 666799999
Q ss_pred chhccCceEEEeeCcEEEEe
Q psy18009 121 STIIHADEILVMHAGEIVER 140 (277)
Q Consensus 121 ~ev~~~Drv~vL~dG~iv~~ 140 (277)
.....|+|.+-|++|+++.+
T Consensus 208 ~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 208 QLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhhhheeeeecceeccC
Confidence 88888999999999999753
No 339
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=4.2e-19 Score=196.44 Aligned_cols=99 Identities=25% Similarity=0.420 Sum_probs=93.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 123 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev 123 (277)
++|+.+++....++++..|||||||||+||+||+.+|++|||||||++||+.+++.+.++|+++++++|+|++||+++++
T Consensus 1044 ~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea 1123 (2272)
T TIGR01257 1044 AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEA 1123 (2272)
T ss_pred HHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 46888999888899999999999999999999999999999999999999999999999999997767899999999999
Q ss_pred cc-CceEEEeeCcEEEEecC
Q psy18009 124 IH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g~ 142 (277)
.. ||||++|++|+++..|+
T Consensus 1124 ~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1124 DLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred HHhCCEEEEEECCEEEEecC
Confidence 86 99999999999998776
No 340
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.78 E-value=4e-19 Score=157.09 Aligned_cols=89 Identities=28% Similarity=0.338 Sum_probs=79.8
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.+++.+++.. ..+.++..||+|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++++ +.|+|++||+++
T Consensus 131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4678888864 34678999999999999999999999999999999999999999999999999875 458889999999
Q ss_pred hhcc-CceEEEe
Q psy18009 122 TIIH-ADEILVM 132 (277)
Q Consensus 122 ev~~-~Drv~vL 132 (277)
++.. |||++.+
T Consensus 211 ~~~~~~d~i~~~ 222 (224)
T TIGR02324 211 VRELVADRVMDV 222 (224)
T ss_pred HHHHhcceeEec
Confidence 8875 9999876
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=1e-18 Score=191.13 Aligned_cols=81 Identities=35% Similarity=0.596 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEe
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 140 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~ 140 (277)
|||||||||+||||++.+|+++||||||++||+...+.+++. ++.+.++.|+|++||+++.+..||+|++|++|+++..
T Consensus 549 LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999974 6777777899999999999877999999999999877
Q ss_pred cC
Q psy18009 141 GS 142 (277)
Q Consensus 141 g~ 142 (277)
|+
T Consensus 629 g~ 630 (1490)
T TIGR01271 629 GT 630 (1490)
T ss_pred cC
Confidence 65
No 342
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=8e-19 Score=154.71 Aligned_cols=81 Identities=37% Similarity=0.573 Sum_probs=72.9
Q ss_pred CCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH--HHHHHhc-CceEEEEecCcchhccCceEEEe
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS--ALNRVCA-SRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~--~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
++++..||+|||||++||||++.+|++|||||||++||+.+.+.+.+ +++.+++ +.|+|++||+++++..||++++|
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l 214 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAM 214 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEe
Confidence 45788999999999999999999999999999999999999999998 6776655 46888999999988669999999
Q ss_pred eCcE
Q psy18009 133 HAGE 136 (277)
Q Consensus 133 ~dG~ 136 (277)
++|.
T Consensus 215 ~~G~ 218 (218)
T cd03290 215 KDGS 218 (218)
T ss_pred cCCC
Confidence 9883
No 343
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.77 E-value=8.6e-19 Score=194.02 Aligned_cols=102 Identities=21% Similarity=0.400 Sum_probs=94.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++|+.+++....++++..||||||||++||+||+.+|+||||||||++||+..++.+++.|+++++ +.|+|++||++++
T Consensus 2053 ~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257 2053 WSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 467888998778999999999999999999999999999999999999999999999999999865 4588889999999
Q ss_pred hcc-CceEEEeeCcEEEEecCcee
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+.. |||+++|++|+++..|+...
T Consensus 2133 ~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2133 CEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHhCCEEEEEECCEEEEECCHHH
Confidence 987 99999999999999887643
No 344
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.77 E-value=7.4e-19 Score=151.81 Aligned_cols=80 Identities=33% Similarity=0.458 Sum_probs=72.9
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
++++.+++....++++..||+|||||++|||||+.+|++|||||||++||+..++.+.++|+++++ +.|+|++||++++
T Consensus 110 ~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 110 EALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 467888887778889999999999999999999999999999999999999999999999999865 4588889999876
Q ss_pred h
Q psy18009 123 I 123 (277)
Q Consensus 123 v 123 (277)
+
T Consensus 190 ~ 190 (190)
T TIGR01166 190 A 190 (190)
T ss_pred C
Confidence 3
No 345
>PLN03211 ABC transporter G-25; Provisional
Probab=99.77 E-value=1.4e-18 Score=176.87 Aligned_cols=101 Identities=27% Similarity=0.442 Sum_probs=88.9
Q ss_pred HhhcccCcccccCC-----eeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEe
Q psy18009 44 AILKNISFTVPAGK-----TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVA 117 (277)
Q Consensus 44 ~vL~~l~l~i~~~~-----~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIs 117 (277)
++++.+++....++ .+..||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++++ +.|+|+++
T Consensus 184 ~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~s 263 (659)
T PLN03211 184 SVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSM 263 (659)
T ss_pred HHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46788888654443 4567999999999999999999999999999999999999999999999975 56888999
Q ss_pred cCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009 118 HRLS-TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 118 H~l~-ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
|+++ ++.. +|++++|++|+++..|+..
T Consensus 264 H~~~~~i~~~~D~iilL~~G~iv~~G~~~ 292 (659)
T PLN03211 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGS 292 (659)
T ss_pred cCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence 9998 4766 9999999999999988754
No 346
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=1.5e-18 Score=152.21 Aligned_cols=90 Identities=28% Similarity=0.299 Sum_probs=80.8
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....+.++..||+|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++++ +.|+|++||+++
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 109 AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4578888887667888999999999999999999999999999999999999999999999999865 468888999999
Q ss_pred hhccCceEEEee
Q psy18009 122 TIIHADEILVMH 133 (277)
Q Consensus 122 ev~~~Drv~vL~ 133 (277)
++.. |+++.+.
T Consensus 189 ~~~~-~~~~~~~ 199 (207)
T PRK13539 189 GLPG-ARELDLG 199 (207)
T ss_pred hhcc-CcEEeec
Confidence 9887 8887773
No 347
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=2.2e-18 Score=171.88 Aligned_cols=95 Identities=31% Similarity=0.454 Sum_probs=85.4
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
+.+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+...+.+.+.|+++. +++|+|||+++
T Consensus 424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~ 501 (552)
T TIGR03719 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRW 501 (552)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence 3578888985 35688999999999999999999999999999999999999999999999999984 58889999999
Q ss_pred hhcc-CceEEEeeC-cEEEE
Q psy18009 122 TIIH-ADEILVMHA-GEIVE 139 (277)
Q Consensus 122 ev~~-~Drv~vL~d-G~iv~ 139 (277)
++.. |||+++|++ |+++.
T Consensus 502 ~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 502 FLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred HHHHhCCEEEEEECCCeEEE
Confidence 9986 999999987 57653
No 348
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.75 E-value=3.6e-18 Score=173.56 Aligned_cols=102 Identities=30% Similarity=0.490 Sum_probs=92.6
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++.-..++.+..||+||+||++|||||+.+|++|||||||++||+.+.+.+.++++++++ +.|+|++||+++
T Consensus 126 ~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred HHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 3467888888778889999999999999999999999999999999999999999999999999875 468888999999
Q ss_pred hhccCceEEEeeCcEEEEecCce
Q psy18009 122 TIIHADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~~Drv~vL~dG~iv~~g~~~ 144 (277)
.+..|||+++|++|++++.|+..
T Consensus 206 ~~~~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 206 VAAQAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHhCCEEEEEECCEEEeecCcc
Confidence 87669999999999999877644
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=3.1e-18 Score=173.08 Aligned_cols=102 Identities=29% Similarity=0.452 Sum_probs=91.6
Q ss_pred HHhhcccCcccccCCeee------ccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEE
Q psy18009 43 RAILKNISFTVPAGKTLA------LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII 115 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~------~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIi 115 (277)
.++++.+++....++.++ .|||||||||+||++|+.+|++++|||||++||+.++..+.+.++++++ +.|+|+
T Consensus 142 ~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~ 221 (617)
T TIGR00955 142 DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221 (617)
T ss_pred HHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 457888999776777777 4999999999999999999999999999999999999999999999976 468888
Q ss_pred EecCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009 116 VAHRLS-TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 116 IsH~l~-ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
++|+++ ++.. +|++++|.+|+++..|+..
T Consensus 222 ~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPD 252 (617)
T ss_pred EeCCCCHHHHHHhceEEEeeCCeEEEECCHH
Confidence 999996 6765 9999999999999998864
No 350
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=3.4e-18 Score=170.76 Aligned_cols=95 Identities=29% Similarity=0.449 Sum_probs=85.5
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
+.+|+.+++. ...++++..|||||||||+||||++.+|++|||||||++||+..++.+.+.|+++. +++|+|||+++
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 503 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRW 503 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHH
Confidence 3578888885 35688999999999999999999999999999999999999999999999999874 58889999999
Q ss_pred hhcc-CceEEEeeC-cEEEE
Q psy18009 122 TIIH-ADEILVMHA-GEIVE 139 (277)
Q Consensus 122 ev~~-~Drv~vL~d-G~iv~ 139 (277)
++.. |||+++|++ |++..
T Consensus 504 ~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 504 FLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred HHHHhCCEEEEEECCCeEEE
Confidence 9986 999999986 77763
No 351
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.7e-18 Score=150.87 Aligned_cols=103 Identities=26% Similarity=0.453 Sum_probs=97.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcch
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~e 122 (277)
.++|.-+++....+...+.||.|||||++|+..++++|++|+||||+|+++.++.+..-++++.++..+++++|.|||..
T Consensus 129 de~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~F 208 (249)
T COG4674 129 DELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGF 208 (249)
T ss_pred HHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHH
Confidence 45788889988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-CceEEEeeCcEEEEecCcee
Q psy18009 123 IIH-ADEILVMHAGEIVERGSLFV 145 (277)
Q Consensus 123 v~~-~Drv~vL~dG~iv~~g~~~~ 145 (277)
+.. +++|+||..|.+.++|+...
T Consensus 209 vr~~A~~VTVlh~G~VL~EGsld~ 232 (249)
T COG4674 209 VREIADKVTVLHEGSVLAEGSLDE 232 (249)
T ss_pred HHHhhheeEEEeccceeecccHHH
Confidence 997 99999999999999998643
No 352
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.74 E-value=5.7e-18 Score=147.32 Aligned_cols=88 Identities=25% Similarity=0.279 Sum_probs=76.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....++++..||+|||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+..
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 3467888887777889999999999999999999999999999999999999999999999999854 468888999974
Q ss_pred hhccCceEEE
Q psy18009 122 TIIHADEILV 131 (277)
Q Consensus 122 ev~~~Drv~v 131 (277)
.+ .|+|++.
T Consensus 189 ~~-~~~~~~~ 197 (198)
T TIGR01189 189 GL-VEARELR 197 (198)
T ss_pred cc-cceEEee
Confidence 43 3566654
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.74 E-value=4.6e-18 Score=172.29 Aligned_cols=95 Identities=28% Similarity=0.445 Sum_probs=85.5
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ 121 (277)
..+|+.+++. ...++++..|||||||||+|||||+.+|++|||||||++||+.+.+.+.++++++ ++|+|+|||+++
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~ 498 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQ 498 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHH
Confidence 3457777875 3578889999999999999999999999999999999999999999999999887 569999999999
Q ss_pred hhcc-CceEEEee-CcEEEE
Q psy18009 122 TIIH-ADEILVMH-AGEIVE 139 (277)
Q Consensus 122 ev~~-~Drv~vL~-dG~iv~ 139 (277)
++.. ||++++|+ +|++..
T Consensus 499 ~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 499 FVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred HHHHhcCEEEEEeCCCeEEE
Confidence 9986 99999998 899875
No 354
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=8.3e-18 Score=161.48 Aligned_cols=91 Identities=26% Similarity=0.443 Sum_probs=83.9
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++.+.++++--.++.+..|||||.||++||.++++++++++||||||-||..++-..-++++++.+ +.++|+|.|+|.
T Consensus 195 devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 195 DEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred HHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 4577888888888999999999999999999999999999999999999999999999999999987 478999999999
Q ss_pred hhcc-CceEEEee
Q psy18009 122 TIIH-ADEILVMH 133 (277)
Q Consensus 122 ev~~-~Drv~vL~ 133 (277)
-+-. +|-|.++-
T Consensus 275 vLD~lsD~vhI~Y 287 (591)
T COG1245 275 VLDYLSDFVHILY 287 (591)
T ss_pred HHHHhhheeEEEe
Confidence 8876 99998884
No 355
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=6e-18 Score=146.98 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=78.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
..+++.+++....++.+..||+|||||++||||++.+|++|||||||++||+.+++.+.+.+++..+ +.|+|++||+++
T Consensus 105 ~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 105 YAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 3467888887667888999999999999999999999999999999999999999999999987644 468888999999
Q ss_pred hhccCceEE
Q psy18009 122 TIIHADEIL 130 (277)
Q Consensus 122 ev~~~Drv~ 130 (277)
++..+|.+.
T Consensus 185 ~i~~~~~~~ 193 (195)
T PRK13541 185 SIKSAQILQ 193 (195)
T ss_pred ccchhheec
Confidence 998888763
No 356
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=8.1e-18 Score=164.59 Aligned_cols=97 Identities=27% Similarity=0.528 Sum_probs=88.1
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS 121 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ 121 (277)
...+.+++. ..++.++..||||.||+|.|||.|+.+|++|||||||.|+|.-++.+++++|+++.++| ++|+||-+|+
T Consensus 383 ~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp 462 (500)
T COG1129 383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP 462 (500)
T ss_pred HHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 346677775 35678899999999999999999999999999999999999999999999999998764 7888999999
Q ss_pred hhcc-CceEEEeeCcEEEEe
Q psy18009 122 TIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~ 140 (277)
|+.. ||||+||++|+++..
T Consensus 463 Ell~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 463 ELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred HHHhhCCEEEEEECCEEEEE
Confidence 9996 999999999999874
No 357
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=7.8e-18 Score=146.84 Aligned_cols=88 Identities=24% Similarity=0.270 Sum_probs=77.7
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ 121 (277)
.++++.+++....+.++..||+||+||++||||++.+|++|||||||++||+.+++.+.+.|+++++ +.|+|++||+..
T Consensus 109 ~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 109 TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 4577888886556788899999999999999999999999999999999999999999999999865 468888999988
Q ss_pred hhccCceEE
Q psy18009 122 TIIHADEIL 130 (277)
Q Consensus 122 ev~~~Drv~ 130 (277)
.+..||.-.
T Consensus 189 ~~~~~d~~~ 197 (200)
T PRK13540 189 PLNKADYEE 197 (200)
T ss_pred hccccchhh
Confidence 887788654
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=152.00 Aligned_cols=84 Identities=31% Similarity=0.537 Sum_probs=78.9
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
||-|||.|++||.+|+++|+||+|||||-+||...+..+.+.+++..+ +.|+++.||.++.+.. ||||++|+.|+++
T Consensus 157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence 999999999999999999999999999999999999999999999865 4688889999999987 9999999999999
Q ss_pred EecCcee
Q psy18009 139 ERGSLFV 145 (277)
Q Consensus 139 ~~g~~~~ 145 (277)
.+|+...
T Consensus 237 ~dg~l~~ 243 (325)
T COG4586 237 FDGTLAQ 243 (325)
T ss_pred ecccHHH
Confidence 9988643
No 359
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.72 E-value=2.2e-17 Score=145.69 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=79.4
Q ss_pred cccCcccccCCeeeccCHHHHHHHHHHHHhcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEE
Q psy18009 47 KNISFTVPAGKTLALLSGGEKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTII 115 (277)
Q Consensus 47 ~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~----------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIi 115 (277)
...++.-..++++..||+||+||++||||++. +|+++||||||++||+...+.+.+.++++++ +.|+|+
T Consensus 109 ~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~ 188 (213)
T cd03279 109 PQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGV 188 (213)
T ss_pred hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 33445555678889999999999999999985 5789999999999999999999999999976 568889
Q ss_pred EecCcchhcc-CceEEEeeCcEE
Q psy18009 116 VAHRLSTIIH-ADEILVMHAGEI 137 (277)
Q Consensus 116 IsH~l~ev~~-~Drv~vL~dG~i 137 (277)
|||+++++.. ||+++++++|..
T Consensus 189 itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 189 ISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred EECchHHHHhhCcEEEEEecCCC
Confidence 9999998886 999999999853
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=3.2e-17 Score=178.38 Aligned_cols=101 Identities=25% Similarity=0.433 Sum_probs=90.2
Q ss_pred HHhhcccCcccccCCeee----ccCHHHHHHHHHHHHhccCCC-EEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEE
Q psy18009 43 RAILKNISFTVPAGKTLA----LLSGGEKQRVAIARTLLKAPQ-IVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIV 116 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~----~LSgGqrQrv~IAral~~~p~-ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiI 116 (277)
.++++.+++.-..++.++ .||||||||++||++|+.+|+ +|+|||||++||+.++..+.+.|+++++ +.|+|++
T Consensus 879 ~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t 958 (1394)
T TIGR00956 879 EEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCT 958 (1394)
T ss_pred HHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 357888898877788887 699999999999999999997 9999999999999999999999999965 4688889
Q ss_pred ecCcchh-cc-CceEEEeeCc-EEEEecCc
Q psy18009 117 AHRLSTI-IH-ADEILVMHAG-EIVERGSL 143 (277)
Q Consensus 117 sH~l~ev-~~-~Drv~vL~dG-~iv~~g~~ 143 (277)
+|+++.. .. +||+++|++| ++++.|+.
T Consensus 959 ~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 959 IHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred ecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999974 44 9999999997 99998875
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=4.5e-17 Score=177.56 Aligned_cols=100 Identities=26% Similarity=0.467 Sum_probs=88.9
Q ss_pred HhhcccCcccccCCee-----eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEe
Q psy18009 44 AILKNISFTVPAGKTL-----ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVA 117 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v-----~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIs 117 (277)
++++.+++.-..++.+ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++. .|+|+++
T Consensus 997 ~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~ 1076 (1470)
T PLN03140 997 EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1076 (1470)
T ss_pred HHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4788888876677776 479999999999999999999999999999999999999999999999764 5888899
Q ss_pred cCcc-hhcc-CceEEEeeC-cEEEEecCc
Q psy18009 118 HRLS-TIIH-ADEILVMHA-GEIVERGSL 143 (277)
Q Consensus 118 H~l~-ev~~-~Drv~vL~d-G~iv~~g~~ 143 (277)
|+++ ++.. ||++++|++ |+++..|+.
T Consensus 1077 Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1077 HQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred CCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 9998 4655 999999996 899988775
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3e-17 Score=141.24 Aligned_cols=82 Identities=35% Similarity=0.603 Sum_probs=76.5
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
+|||+|||+.|||-|+..|++++|||||.+||..-..+++++++.|..+ -+++|+||++.-+.. +||..||++|+++
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVV 231 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEe
Confidence 8999999999999999999999999999999999999999999999653 488899999999986 9999999999999
Q ss_pred EecCc
Q psy18009 139 ERGSL 143 (277)
Q Consensus 139 ~~g~~ 143 (277)
+.|-.
T Consensus 232 e~GLT 236 (258)
T COG4107 232 ESGLT 236 (258)
T ss_pred ccccc
Confidence 87753
No 363
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.70 E-value=7.1e-17 Score=141.38 Aligned_cols=89 Identities=27% Similarity=0.375 Sum_probs=76.4
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEec
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH 118 (277)
.++++. .-..++++..||+|||||++||++++ .+|+++||||||++||+...+.+.+.|+++.++.++|++||
T Consensus 98 ~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH 174 (197)
T cd03278 98 SEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITH 174 (197)
T ss_pred HHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 345555 33457788999999999999999986 46799999999999999999999999999977778889999
Q ss_pred CcchhccCceEEEeeC
Q psy18009 119 RLSTIIHADEILVMHA 134 (277)
Q Consensus 119 ~l~ev~~~Drv~vL~d 134 (277)
+++++..||+++.+..
T Consensus 175 ~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 175 RKGTMEAADRLYGVTM 190 (197)
T ss_pred CHHHHhhcceEEEEEe
Confidence 9998756999998863
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.69 E-value=5.9e-17 Score=176.36 Aligned_cols=99 Identities=23% Similarity=0.328 Sum_probs=87.4
Q ss_pred HhhcccCcccccCCee-----eccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009 44 AILKNISFTVPAGKTL-----ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 116 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v-----~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI 116 (277)
.+|+.+++....++++ ..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++.+ +.|+|++
T Consensus 187 ~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3678889976666665 46999999999999999999999999999999999999999999999975 4588889
Q ss_pred ecCc-chhcc-CceEEEeeCcEEEEecC
Q psy18009 117 AHRL-STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 117 sH~l-~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+|+. +++.. +|++++|.+|+++..|+
T Consensus 267 ~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 267 IYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred ecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 9997 56776 99999999999997765
No 365
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=8.8e-17 Score=140.89 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=78.0
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc---Cc-eEEE
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCA---SR-TTII 115 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~---~~-tiIi 115 (277)
++|+. .....+++..||+|||||++||+|+ +.+|+++||||||++||+.....+.+.|.++.. ++ ++|+
T Consensus 95 ~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii 171 (198)
T cd03276 95 SFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI 171 (198)
T ss_pred HHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 34554 4556788999999999999999999 589999999999999999999999999998753 33 6777
Q ss_pred EecCcchhccCceEEEeeCcE
Q psy18009 116 VAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 116 IsH~l~ev~~~Drv~vL~dG~ 136 (277)
+||+++++..+|||.||+.++
T Consensus 172 ~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 172 TPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred ECCcccccccccceeEEEecC
Confidence 999999999899999999853
No 366
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.68 E-value=1.2e-16 Score=167.50 Aligned_cols=102 Identities=32% Similarity=0.501 Sum_probs=91.3
Q ss_pred HhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009 44 AILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH 118 (277)
..|+.+++. ...++++..|||||+||+.||++|+.+| +++||||||++||+.+.+.+++.|+++.+ +.|+|+|+|
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH 891 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEH 891 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 356677886 3578999999999999999999999999 99999999999999999999999999975 458899999
Q ss_pred CcchhccCceEEEe------eCcEEEEecCcee
Q psy18009 119 RLSTIIHADEILVM------HAGEIVERGSLFV 145 (277)
Q Consensus 119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~~ 145 (277)
+++.+..||++++| ++|+++..|+...
T Consensus 892 ~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 892 NLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred CHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99998779999999 7999999887643
No 367
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.68 E-value=1.3e-16 Score=144.06 Aligned_cols=90 Identities=23% Similarity=0.394 Sum_probs=77.3
Q ss_pred HHhhcccCcccc--------------------cCCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHH
Q psy18009 43 RAILKNISFTVP--------------------AGKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTER 98 (277)
Q Consensus 43 ~~vL~~l~l~i~--------------------~~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~ 98 (277)
..+|+.+++.++ .++++..||+|||||++||+||+ .+|+++||||||++||+.+.+
T Consensus 128 ~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~ 207 (251)
T cd03273 128 QDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQ 207 (251)
T ss_pred HHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHH
Confidence 357888888643 34678899999999999999998 578999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecCcchhc-cCceEEEee
Q psy18009 99 NIQSALNRVCASRTTIIVAHRLSTII-HADEILVMH 133 (277)
Q Consensus 99 ~l~~~l~~l~~~~tiIiIsH~l~ev~-~~Drv~vL~ 133 (277)
.+++.+++++++.++|+|||+ .++. .|||++-++
T Consensus 208 ~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 208 NIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 999999999776688999999 5555 599998764
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=1.1e-16 Score=175.62 Aligned_cols=93 Identities=27% Similarity=0.444 Sum_probs=80.2
Q ss_pred CcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHhcCceEEEEecCcchhccCce
Q psy18009 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA-LNRVCASRTTIIVAHRLSTIIHADE 128 (277)
Q Consensus 50 ~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~-l~~l~~~~tiIiIsH~l~ev~~~Dr 128 (277)
|+.-..+++...|||||||||+||||++.+|++|||||||++||+...+.+++. +....++.|+|++||+++.+..||+
T Consensus 771 g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ 850 (1560)
T PTZ00243 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADY 850 (1560)
T ss_pred cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence 344445778889999999999999999999999999999999999998888764 3444456799999999999877999
Q ss_pred EEEeeCcEEEEecC
Q psy18009 129 ILVMHAGEIVERGS 142 (277)
Q Consensus 129 v~vL~dG~iv~~g~ 142 (277)
|++|++|+++..|+
T Consensus 851 ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 851 VVALGDGRVEFSGS 864 (1560)
T ss_pred EEEEECCEEEEecC
Confidence 99999999987665
No 369
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=2.4e-16 Score=164.88 Aligned_cols=101 Identities=30% Similarity=0.476 Sum_probs=90.1
Q ss_pred HhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhcc---CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEec
Q psy18009 44 AILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH 118 (277)
Q Consensus 44 ~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~---~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH 118 (277)
.+|+.+++.- ..++++..|||||+||+.||++|+. +|+++||||||++||+...+.+.+.|+++.+ +.|+|+|+|
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H 889 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEH 889 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4677788863 5789999999999999999999997 5999999999999999999999999999975 458889999
Q ss_pred CcchhccCceEEEe------eCcEEEEecCce
Q psy18009 119 RLSTIIHADEILVM------HAGEIVERGSLF 144 (277)
Q Consensus 119 ~l~ev~~~Drv~vL------~dG~iv~~g~~~ 144 (277)
+++.+..||++++| ++|+++..|+..
T Consensus 890 ~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 890 NLDVIKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred CHHHHHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 99988779999999 799999887653
No 370
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.65 E-value=3.9e-16 Score=138.25 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=77.8
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
++++.+++.-..++++..||+|||||++||+|++. +|+++||||||++||+.+.+.+.+.++++.+++++|++||+
T Consensus 110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~ 189 (212)
T cd03274 110 EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR 189 (212)
T ss_pred cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 45566777666677889999999999999999974 57999999999999999999999999999877899999999
Q ss_pred cchhcc-CceEEEeeC
Q psy18009 120 LSTIIH-ADEILVMHA 134 (277)
Q Consensus 120 l~ev~~-~Drv~vL~d 134 (277)
. ++.. |||+++|..
T Consensus 190 ~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 190 N-NMFELADRLVGIYK 204 (212)
T ss_pred H-HHHHhCCEEEEEEe
Confidence 4 5554 999999853
No 371
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=5.9e-16 Score=139.63 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.6
Q ss_pred eeeccCHHHHHHHHHHHHhccC----CCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEe
Q psy18009 58 TLALLSGGEKQRVAIARTLLKA----PQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVM 132 (277)
Q Consensus 58 ~v~~LSgGqrQrv~IAral~~~----p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL 132 (277)
++..||+|||||++||++++.+ |+++||||||++||+.....+.+.|+++++ +.++|+|||+.+.+..|||+++|
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 3578999999999999999865 899999999999999999999999999976 45888899996655559999988
Q ss_pred e
Q psy18009 133 H 133 (277)
Q Consensus 133 ~ 133 (277)
.
T Consensus 232 ~ 232 (247)
T cd03275 232 Y 232 (247)
T ss_pred E
Confidence 5
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.64 E-value=6.6e-16 Score=138.00 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=66.0
Q ss_pred CCeeeccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEE
Q psy18009 56 GKTLALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEIL 130 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~ 130 (277)
++++..||+|||||++||||++. +|+++||||||++||+...+.+.+.++++.++.++|+++|+ .++.. ||+++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~~~~d~i~ 231 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELLEVADKFY 231 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHhhCCEEE
Confidence 46788899999999999999973 68999999999999999999999999999765455556676 55655 99999
Q ss_pred Eee
Q psy18009 131 VMH 133 (277)
Q Consensus 131 vL~ 133 (277)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 984
No 373
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=4.4e-16 Score=137.63 Aligned_cols=97 Identities=29% Similarity=0.527 Sum_probs=86.8
Q ss_pred Hhhcc--cCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecC
Q psy18009 44 AILKN--ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119 (277)
Q Consensus 44 ~vL~~--l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~tiIiIsH~ 119 (277)
+-|.. +||+-..+.+++.|||||||-++++.|.+..|+||+|||=||+|||...+.+++.-.+..++ -|.++|||.
T Consensus 129 ~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 129 ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred HHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence 34554 45677789999999999999999999999999999999999999999999999999998543 499999999
Q ss_pred cchhcc-CceEEEeeCcEEEEe
Q psy18009 120 LSTIIH-ADEILVMHAGEIVER 140 (277)
Q Consensus 120 l~ev~~-~Drv~vL~dG~iv~~ 140 (277)
|+.... .+|.++|++|+|+.+
T Consensus 209 m~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 209 MEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHhhCCeEEEEeCCeEEEE
Confidence 999875 999999999999965
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.63 E-value=2.9e-16 Score=171.26 Aligned_cols=99 Identities=22% Similarity=0.422 Sum_probs=87.4
Q ss_pred HhhcccCcccccC-----CeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEE
Q psy18009 44 AILKNISFTVPAG-----KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIV 116 (277)
Q Consensus 44 ~vL~~l~l~i~~~-----~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiI 116 (277)
.+|+.+|++...+ +.+..|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++.+ +.|+|++
T Consensus 314 ~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 314 YTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393 (1470)
T ss_pred HHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788899976554 45567999999999999999999999999999999999999999999999964 4588889
Q ss_pred ecCc-chhcc-CceEEEeeCcEEEEecC
Q psy18009 117 AHRL-STIIH-ADEILVMHAGEIVERGS 142 (277)
Q Consensus 117 sH~l-~ev~~-~Drv~vL~dG~iv~~g~ 142 (277)
+|+. +++.. +|+|++|.+|+++..|+
T Consensus 394 ~Hqp~~~i~~lfD~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 394 LLQPAPETFDLFDDIILLSEGQIVYQGP 421 (1470)
T ss_pred ecCCCHHHHHHhheEEEeeCceEEEeCC
Confidence 9997 57776 99999999999998776
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.63 E-value=7.3e-16 Score=135.61 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCeeeccCHHHHHH------HHHHHHhccCCCEEEEecCCCCCCHHHHH-HHHHHHHHHhc--CceEEEEecCcchhccC
Q psy18009 56 GKTLALLSGGEKQR------VAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCA--SRTTIIVAHRLSTIIHA 126 (277)
Q Consensus 56 ~~~v~~LSgGqrQr------v~IAral~~~p~ilILDEPTa~LD~~~~~-~l~~~l~~l~~--~~tiIiIsH~l~ev~~~ 126 (277)
++.+..||+||+|| ++||||++.+|+++||||||++||+...+ .+.+.++++++ +.++|++||+++.+..|
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 55788999999996 78999999999999999999999999999 99999999976 45889999998876669
Q ss_pred ceEEEeeC
Q psy18009 127 DEILVMHA 134 (277)
Q Consensus 127 Drv~vL~d 134 (277)
|++++|++
T Consensus 190 d~i~~l~~ 197 (204)
T cd03240 190 DHIYRVEK 197 (204)
T ss_pred CEEEEEee
Confidence 99999964
No 376
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3e-15 Score=133.28 Aligned_cols=82 Identities=32% Similarity=0.514 Sum_probs=76.5
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhcc--CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH--ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~--~Drv~vL~dG~iv 138 (277)
+|||||+|.+|+.+++.+|++.|||||-|+||..+.+.+.+.+..+++. .++++|||.-.-+.. .|+|.||-+|+|+
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999999999875 588889999776654 7999999999999
Q ss_pred EecCc
Q psy18009 139 ERGSL 143 (277)
Q Consensus 139 ~~g~~ 143 (277)
..|.+
T Consensus 225 ~sG~~ 229 (251)
T COG0396 225 KSGDP 229 (251)
T ss_pred ecCCH
Confidence 99987
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=9.5e-16 Score=152.26 Aligned_cols=110 Identities=35% Similarity=0.571 Sum_probs=100.8
Q ss_pred CceEEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------------
Q psy18009 27 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------------------------------- 61 (277)
Q Consensus 27 ~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------------------------------- 61 (277)
+-.++++|+++.|.+.+.++++++|.+.+|++++.
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~ 398 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELD 398 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcC
Confidence 45799999999997667899999999999999874
Q ss_pred -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009 62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100 (277)
Q Consensus 62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l 100 (277)
||||||-|+.+|+.++.+|.+|||||||+.||..+.+.|
T Consensus 399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
-+.|... .||+|+||||-..+.. |++++++.+ .+..
T Consensus 479 e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~ 515 (530)
T COG0488 479 EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEE 515 (530)
T ss_pred HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeE
Confidence 9999875 5899999999999987 999999998 5543
No 378
>KOG0062|consensus
Probab=99.63 E-value=8.3e-17 Score=156.28 Aligned_cols=91 Identities=30% Similarity=0.420 Sum_probs=81.1
Q ss_pred hhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchh
Q psy18009 45 ILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTI 123 (277)
Q Consensus 45 vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev 123 (277)
+|..+||+-+ .-++++.||||.|-|+++||||..+|++|+|||||+.||..+..-|-.-|..+. .|+|+|||+-.++
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FL 258 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFL 258 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHH
Confidence 7889999754 566889999999999999999999999999999999999999999988888765 7999999999888
Q ss_pred cc-CceEEEeeCcEE
Q psy18009 124 IH-ADEILVMHAGEI 137 (277)
Q Consensus 124 ~~-~Drv~vL~dG~i 137 (277)
-. |.-|+.+++=++
T Consensus 259 n~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 259 NTVCTDIIHLENLKL 273 (582)
T ss_pred HHHHHHHHHHhhhhh
Confidence 87 988888877555
No 379
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=6.5e-16 Score=132.17 Aligned_cols=109 Identities=35% Similarity=0.551 Sum_probs=91.8
Q ss_pred EEeeeeeeeC-----ch----HHhhcccCccc-ccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009 31 EFRNVSFSYT-----PE----RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100 (277)
Q Consensus 31 ~~~nvsf~Y~-----~~----~~vL~~l~l~i-~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l 100 (277)
.-+|+-|.|. .+ ...|+++++.. ...+.+..|||||+||++|+|-|..-|+||+||||||+||+.+++.+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 3578888872 11 34678888853 46778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cC-ceEEEEecCcchhc-cCceEEEeeCcEEEE
Q psy18009 101 QSALNRVC-AS-RTTIIVAHRLSTII-HADEILVMHAGEIVE 139 (277)
Q Consensus 101 ~~~l~~l~-~~-~tiIiIsH~l~ev~-~~Drv~vL~dG~iv~ 139 (277)
-++|.++. ++ ..+++|||+-++.. .+|+++-+.+|++-+
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999986 44 57888999999966 599999999997643
No 380
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=4.4e-16 Score=133.53 Aligned_cols=71 Identities=32% Similarity=0.499 Sum_probs=65.1
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEE-EecCcchhc-c-CceEEEee
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRLSTII-H-ADEILVMH 133 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIi-IsH~l~ev~-~-~Drv~vL~ 133 (277)
+||||||||.|||.++.|-+||+||||||+||..+++.+.++|++.+..|+.|+ |-|+ +++. . |||++-+.
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~ 226 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVS 226 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeecc
Confidence 899999999999999999999999999999999999999999999988887777 9998 5565 4 99998774
No 381
>KOG0059|consensus
Probab=99.59 E-value=1.9e-15 Score=158.49 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=96.0
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCcc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLS 121 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l~ 121 (277)
..+|+.+++....+++++.+|||+|+|+.+|-|++-+|++++|||||+|+||.+++.+++++.++++++ .+|++||.|+
T Consensus 680 ~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 680 EKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred HHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 457888999999999999999999999999999999999999999999999999999999999998876 8888999999
Q ss_pred hhcc-CceEEEeeCcEEEEecCce
Q psy18009 122 TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 122 ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
|... |||+.+|.+|++...|+..
T Consensus 760 E~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 760 EAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred HHHHHhhhhheeecCeeEEecChH
Confidence 9997 9999999999999988754
No 382
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=2e-14 Score=128.98 Aligned_cols=84 Identities=27% Similarity=0.364 Sum_probs=79.0
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH-hcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l-~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
+|-||+-|++.+-|...+|+|||+||..|..|+.-.+...+.+.++ .++.|+|++||+++.+.. |||+++|++|++..
T Consensus 148 YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 8999999999999999999999999999999999999999999999 456788889999999997 99999999999999
Q ss_pred ecCcee
Q psy18009 140 RGSLFV 145 (277)
Q Consensus 140 ~g~~~~ 145 (277)
.|++..
T Consensus 228 ~G~~~~ 233 (249)
T COG1134 228 EGSPEE 233 (249)
T ss_pred cCCHHH
Confidence 988654
No 383
>KOG0062|consensus
Probab=99.56 E-value=1.3e-14 Score=141.15 Aligned_cols=76 Identities=32% Similarity=0.515 Sum_probs=71.8
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
||||||-||++|.....+|.+|+|||||+.||..+...|-+.|+.+ +|.||+|||+.+.+.. |+.+++.+||++..
T Consensus 483 LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 483 LSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999999999999999998876 5789999999999987 99999999999875
No 384
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=9.4e-15 Score=129.57 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=69.3
Q ss_pred CCeeeccCHHHHHHHHHHHHh----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC--c-eEEEEecCcchhcc-Cc
Q psy18009 56 GKTLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--R-TTIIVAHRLSTIIH-AD 127 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral----~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~--~-tiIiIsH~l~ev~~-~D 127 (277)
...+..||+||||++.+++++ +.+|+++||||||++||+.....+++.+.++.+. + ++|++||++.++.. ||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 445678999999999887655 4799999999999999999999999999998654 3 68889999988764 55
Q ss_pred --eEEEeeCcEE
Q psy18009 128 --EILVMHAGEI 137 (277)
Q Consensus 128 --rv~vL~dG~i 137 (277)
+|++|.+|+-
T Consensus 201 ~~~v~~l~~g~~ 212 (213)
T cd03277 201 KMTVLCVYNGPH 212 (213)
T ss_pred ceEEEEEecCcc
Confidence 8888888863
No 385
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.55 E-value=8.7e-15 Score=126.96 Aligned_cols=85 Identities=39% Similarity=0.604 Sum_probs=78.7
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEecCcchhcc-CceEEEeeCcEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVAHRLSTIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIsH~l~ev~~-~Drv~vL~dG~iv 138 (277)
||.|||||||+||||..+|+|+|.||+.++||..-+-++..++-+|.+. | +-|+++.++.-+.. +|.|+||+.|+++
T Consensus 150 la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 9999999999999999999999999999999999999999999999764 4 67779999999997 9999999999999
Q ss_pred EecCceee
Q psy18009 139 ERGSLFVS 146 (277)
Q Consensus 139 ~~g~~~~~ 146 (277)
+.|+....
T Consensus 230 E~G~t~~v 237 (267)
T COG4167 230 ERGSTADV 237 (267)
T ss_pred ecCChhhh
Confidence 99986543
No 386
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.55 E-value=2.4e-14 Score=123.67 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=67.5
Q ss_pred eccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceEEEeeC
Q psy18009 60 ALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 60 ~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
..||+||+||++||++++ .+|+++|||||+++||+...+.+.+.+.++.+. .++|++||+.+.+..+||++.+..
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 339999999999999996 699999999999999999999999999998765 688889999887767999999864
No 387
>KOG0061|consensus
Probab=99.54 E-value=8.2e-15 Score=148.21 Aligned_cols=102 Identities=34% Similarity=0.520 Sum_probs=91.3
Q ss_pred HHhhcccCcccccCCeeec-----cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEE
Q psy18009 43 RAILKNISFTVPAGKTLAL-----LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIV 116 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~-----LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiI 116 (277)
+++++.+|+.--.++.++. +|||||+||+||.-|+.||.||+|||||++||...+..+.+.|++++++| |||++
T Consensus 147 ~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 147 EEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred HHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 4578999999778888875 99999999999999999999999999999999999999999999997654 67777
Q ss_pred ecCcc-hhcc-CceEEEeeCcEEEEecCce
Q psy18009 117 AHRLS-TIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 117 sH~l~-ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
=|... ++.. .|++++|..|++++.|+..
T Consensus 227 IHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred EeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 79875 5666 9999999999999999754
No 388
>KOG0927|consensus
Probab=99.50 E-value=1.6e-14 Score=141.18 Aligned_cols=109 Identities=34% Similarity=0.575 Sum_probs=100.2
Q ss_pred eEEEeeeeeeeCchHHhhcccCcccccCCeeec-----------------------------------------------
Q psy18009 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLAL----------------------------------------------- 61 (277)
Q Consensus 29 ~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~----------------------------------------------- 61 (277)
.|.|.|++|.|+++..++++++|.++++.+++.
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCc
Confidence 478999999998777899999999999998864
Q ss_pred -----------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHH
Q psy18009 62 -----------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100 (277)
Q Consensus 62 -----------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l 100 (277)
||+|||.||..|+.++..|.+|+|||||++||.+....+
T Consensus 469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~l 548 (614)
T KOG0927|consen 469 DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL 548 (614)
T ss_pred chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEecCcchhcc-CceEEEeeCcEEEE
Q psy18009 101 QSALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139 (277)
Q Consensus 101 ~~~l~~l~~~~tiIiIsH~l~ev~~-~Drv~vL~dG~iv~ 139 (277)
.+.|.++ .|++|++||++..+.. ++++++..+|.+..
T Consensus 549 aeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 549 AEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred HHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999875 5789999999999987 99999999988764
No 389
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=4.9e-14 Score=129.24 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=68.5
Q ss_pred ccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcE
Q psy18009 61 LLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~ 136 (277)
.||+||+||+++|++++. +|+++||||||++||+.....+.+.++++.++.++|++||+++....||++++|.+|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999987654 9999999999999999999999999999977778999999988554599999998864
Q ss_pred E
Q psy18009 137 I 137 (277)
Q Consensus 137 i 137 (277)
.
T Consensus 250 ~ 250 (276)
T cd03241 250 E 250 (276)
T ss_pred C
Confidence 3
No 390
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=8.2e-14 Score=141.41 Aligned_cols=98 Identities=31% Similarity=0.488 Sum_probs=85.1
Q ss_pred hcccCcc-cccCCeeeccCHHHHHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcc
Q psy18009 46 LKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLS 121 (277)
Q Consensus 46 L~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~--p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ 121 (277)
|-++||. ..+++..++|||||.||+-+|.-+-.+ -=+++||||+.+|-+...++|.+.|++|++. .|+|+|.|+-+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 4456664 557778889999999999999999765 4589999999999999999999999999985 59999999999
Q ss_pred hhccCceEEEe------eCcEEEEecCc
Q psy18009 122 TIIHADEILVM------HAGEIVERGSL 143 (277)
Q Consensus 122 ev~~~Drv~vL------~dG~iv~~g~~ 143 (277)
.+..||+|+-| ..|+|++.|++
T Consensus 545 ti~~AD~iIDiGPgAG~~GGeIv~~Gtp 572 (935)
T COG0178 545 TIRAADHIIDIGPGAGEHGGEIVAEGTP 572 (935)
T ss_pred HHhhcCEEEeeCCCCCcCCCEEEEccCH
Confidence 99999999998 46889988863
No 391
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.48 E-value=1.3e-13 Score=138.28 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=83.4
Q ss_pred eccCHHHHHHHHHHHHhccC----CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCc
Q psy18009 60 ALLSGGEKQRVAIARTLLKA----PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAG 135 (277)
Q Consensus 60 ~~LSgGqrQrv~IAral~~~----p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG 135 (277)
..|||||+||++||++++.. |++|||||||++||+.....+.+.|+++.++.++|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 57999999999999999875 69999999999999999999999999998777899999999877669999999987
Q ss_pred EEEEecCceeeehhcCCCCCch-hHHHHHHhccc
Q psy18009 136 EIVERGSLFVSLLQVGQSGAGK-STIIRLLFRFY 168 (277)
Q Consensus 136 ~iv~~g~~~~~~~~~G~~GsGk-ttL~~~l~Gl~ 168 (277)
.. .+.....+. .+++-.| .+++|+|.|..
T Consensus 519 ~~--~~~t~s~i~--~L~~~~r~~EiArml~G~~ 548 (563)
T TIGR00634 519 GL--DGRTATRVR--PLSGEERVAELARMLAGLE 548 (563)
T ss_pred cC--CCcEEEEEE--ECCccHHHHHHHHHhCCCC
Confidence 52 221111111 1344444 45888887753
No 392
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.8e-13 Score=139.02 Aligned_cols=103 Identities=32% Similarity=0.483 Sum_probs=93.2
Q ss_pred hhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecC
Q psy18009 45 ILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAP---QIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHR 119 (277)
Q Consensus 45 vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p---~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~ 119 (277)
.|.++||. +..|++..+|||||.|||-+|+-|.+.. -++||||||.+|-....+.|+++|.+|.++ .|+|+|.|+
T Consensus 805 tL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN 884 (935)
T COG0178 805 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN 884 (935)
T ss_pred HHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 57788885 8899999999999999999999999877 899999999999999999999999999875 599999999
Q ss_pred cchhccCceEEEe------eCcEEEEecCceeee
Q psy18009 120 LSTIIHADEILVM------HAGEIVERGSLFVSL 147 (277)
Q Consensus 120 l~ev~~~Drv~vL------~dG~iv~~g~~~~~~ 147 (277)
|+-+..||.|+-| +.|+|++.|++....
T Consensus 885 LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 885 LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred cceEeecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 9999999999998 467899999876543
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=132.82 Aligned_cols=91 Identities=30% Similarity=0.455 Sum_probs=83.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc--CceEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~--~~tiIiIsH~l 120 (277)
.++++-++++--.++.+..|||||.|||+||.+|.+++++++||||+|-||.+.+-..-+.|++..+ +.|.++|.|++
T Consensus 437 ~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 437 TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 3577788888888899999999999999999999999999999999999999999999999999865 46899999999
Q ss_pred chhcc-CceEEEee
Q psy18009 121 STIIH-ADEILVMH 133 (277)
Q Consensus 121 ~ev~~-~Drv~vL~ 133 (277)
-.+-. +||++|+.
T Consensus 517 ~~~dyvsDr~ivF~ 530 (591)
T COG1245 517 YMIDYVSDRLIVFE 530 (591)
T ss_pred ehhhhhhceEEEEe
Confidence 98876 99999884
No 394
>KOG0066|consensus
Probab=99.45 E-value=2.5e-13 Score=130.58 Aligned_cols=106 Identities=29% Similarity=0.560 Sum_probs=92.1
Q ss_pred eEEEeeeeeeeCchHHhhcccCcccccCCeeec-----------------------------------------------
Q psy18009 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLAL----------------------------------------------- 61 (277)
Q Consensus 29 ~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~----------------------------------------------- 61 (277)
.+-+.||+|.|+...++++.++|-++.+.+++.
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~ 665 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG 665 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc
Confidence 356899999999888999999999999988764
Q ss_pred ---------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Q psy18009 62 ---------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102 (277)
Q Consensus 62 ---------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~ 102 (277)
|||||+-||++|-.-+..|+||||||||.+||.++...|-+
T Consensus 666 Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaE 745 (807)
T KOG0066|consen 666 EETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAE 745 (807)
T ss_pred ccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecCcchhcc--CceEEEeeCcEE
Q psy18009 103 ALNRVCASRTTIIVAHRLSTIIH--ADEILVMHAGEI 137 (277)
Q Consensus 103 ~l~~l~~~~tiIiIsH~l~ev~~--~Drv~vL~dG~i 137 (277)
.|.+. .|.+|++||+-..+.. | ..+|+.+-.|
T Consensus 746 AIney--~GgVi~VsHDeRLi~eT~C-~LwVvE~Q~i 779 (807)
T KOG0066|consen 746 AINEY--NGGVIMVSHDERLIVETDC-NLWVVENQGI 779 (807)
T ss_pred HHHhc--cCcEEEEecccceeeecCc-eEEEEccCCh
Confidence 99886 4788999999888875 5 4555554433
No 395
>PRK10869 recombination and repair protein; Provisional
Probab=99.45 E-value=3.4e-13 Score=134.99 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=85.4
Q ss_pred ccCCee----eccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhcc
Q psy18009 54 PAGKTL----ALLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIH 125 (277)
Q Consensus 54 ~~~~~v----~~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~ 125 (277)
.+|++. ..|||||+|||+||++++. +|+++|||||+++||......+.+.|+++.++.++|+|||++..+..
T Consensus 419 n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ 498 (553)
T PRK10869 419 NPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC 498 (553)
T ss_pred CCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 345544 3699999999999999996 68999999999999999999999999999877789999999987756
Q ss_pred CceEEEeeCcEEEEecCceeeehhcCCCCCch-hHHHHHHhccc
Q psy18009 126 ADEILVMHAGEIVERGSLFVSLLQVGQSGAGK-STIIRLLFRFY 168 (277)
Q Consensus 126 ~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGk-ttL~~~l~Gl~ 168 (277)
||+.+++.++.. .+.....+. -+++-+| .+++|+|.|..
T Consensus 499 ad~~~~v~k~~~--~~~t~s~i~--~L~~~~R~~EiARMl~G~~ 538 (553)
T PRK10869 499 GHQHFFVSKETD--GGMTETHMQ--PLDKKARLQELARLLGGSE 538 (553)
T ss_pred CCEEEEEecccc--CCeeeEEEE--ECChhHHHHHHHHHhCCCC
Confidence 999999987642 111111111 1344444 35888887753
No 396
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.44 E-value=3.7e-13 Score=134.44 Aligned_cols=103 Identities=37% Similarity=0.527 Sum_probs=91.6
Q ss_pred CceEEEeeeeeeeCchHHhhcccCcccccCCeeec---------------------------------------------
Q psy18009 27 QGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--------------------------------------------- 61 (277)
Q Consensus 27 ~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~--------------------------------------------- 61 (277)
...|+|+|++..-+++...++++++.+.+|+.+-.
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~ 469 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ 469 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence 46799999999988778899999999999997642
Q ss_pred ----------------------------------------------cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHH
Q psy18009 62 ----------------------------------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95 (277)
Q Consensus 62 ----------------------------------------------LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~ 95 (277)
||+|||||+++||.++++|++++|||.|++||+.
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceEEEEecCcchhccCceE
Q psy18009 96 TERNIQSALNRVCASRTTIIVAHRLSTIIHADEI 129 (277)
Q Consensus 96 ~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv 129 (277)
....+++.+++-..+.|+|-|+|+-......++.
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhh
Confidence 9999999999987888888899997666543333
No 397
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=114.64 Aligned_cols=90 Identities=31% Similarity=0.419 Sum_probs=77.1
Q ss_pred HHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHH-HHhcCc-eEEEEecCc
Q psy18009 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASR-TTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~-~l~~~~-tiIiIsH~l 120 (277)
..+|++.+++-..++-+.+||||||-||++-|+|+..|+.++||||+|.||..-+.++.+.+- ++...+ -+|.+||++
T Consensus 116 ~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 357888888888888888999999999999999999999999999999999999999888864 444444 678899999
Q ss_pred chhccCceEEEe
Q psy18009 121 STIIHADEILVM 132 (277)
Q Consensus 121 ~ev~~~Drv~vL 132 (277)
+.+....||+-|
T Consensus 196 ~DvpagsrVie~ 207 (213)
T COG4136 196 QDVPAGSRVIEM 207 (213)
T ss_pred ccCCCCCeeeee
Confidence 999876676654
No 398
>KOG0066|consensus
Probab=99.42 E-value=4.6e-14 Score=135.52 Aligned_cols=95 Identities=26% Similarity=0.419 Sum_probs=82.4
Q ss_pred hHHhhcccCcccc-cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCc
Q psy18009 42 ERAILKNISFTVP-AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120 (277)
Q Consensus 42 ~~~vL~~l~l~i~-~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l 120 (277)
.+.+|..+||+-. ..++...+|||.|-||++||||...|-+|.|||||..||-...--|-..|..++ .|.+|+||+-
T Consensus 392 ARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQ 469 (807)
T KOG0066|consen 392 ARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQ 469 (807)
T ss_pred HHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEeccc
Confidence 4678999999754 455667799999999999999999999999999999999998887777777664 4889999999
Q ss_pred chhcc-CceEEEeeCcEEE
Q psy18009 121 STIIH-ADEILVMHAGEIV 138 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv 138 (277)
.++-. |..|+.|++-++.
T Consensus 470 gFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 470 GFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred chHHHHHHHHhhhhhhhhh
Confidence 99987 9999999887764
No 399
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.7e-13 Score=116.81 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=79.5
Q ss_pred EEeeeeeeeC---c-----hHHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHH
Q psy18009 31 EFRNVSFSYT---P-----ERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102 (277)
Q Consensus 31 ~~~nvsf~Y~---~-----~~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~ 102 (277)
.++|+.|--. . -.++|+.+|+.-..+.+++.||.|||+||+|||-++..++++||||||++||.+....+-.
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~ 171 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence 4788888311 1 1568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-ceEEEEecCcchh
Q psy18009 103 ALNRVCAS-RTTIIVAHRLSTI 123 (277)
Q Consensus 103 ~l~~l~~~-~tiIiIsH~l~ev 123 (277)
++.....+ |.||..||..--+
T Consensus 172 l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHhcCCCEEEEecCCccCC
Confidence 99988765 5666699975433
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.42 E-value=3.9e-13 Score=113.89 Aligned_cols=74 Identities=26% Similarity=0.354 Sum_probs=66.8
Q ss_pred ccCHHHHHHHHHHHHhcc----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcchhccCceEEEeeC
Q psy18009 61 LLSGGEKQRVAIARTLLK----APQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLSTIIHADEILVMHA 134 (277)
Q Consensus 61 ~LSgGqrQrv~IAral~~----~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~ev~~~Drv~vL~d 134 (277)
.||+||+||++||++|.. +|+++|||||++++|+.+...+.+.+.++.. +.++|++||+.+....+|++++|..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 499999999999999986 7899999999999999999999999988754 4588889999998877999999864
No 401
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.42 E-value=2.5e-13 Score=135.13 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=74.2
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhc----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHHHhcCce
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLL----------KAPQIVLLDEAT-SALDTKTERNIQSALNRVCASRT 112 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~----------~~p~ilILDEPT-a~LD~~~~~~l~~~l~~l~~~~t 112 (277)
..++..|.. ...+..|||||+||++||+||+ .+|++||||||| ++||+.....+.+.|.++ ++.+
T Consensus 454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~ 529 (562)
T PHA02562 454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTN 529 (562)
T ss_pred hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCe
Confidence 344545542 2357889999999999999987 599999999998 789999999999999998 5668
Q ss_pred EEEEecCcchhccCceEEEeeC-cEE
Q psy18009 113 TIIVAHRLSTIIHADEILVMHA-GEI 137 (277)
Q Consensus 113 iIiIsH~l~ev~~~Drv~vL~d-G~i 137 (277)
+|+|||+......|||+++|.+ |..
T Consensus 530 iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 530 VFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred EEEEECchhchhhhhcEEEEEEECCe
Confidence 8999999665556999999986 543
No 402
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=131.49 Aligned_cols=102 Identities=23% Similarity=0.380 Sum_probs=92.3
Q ss_pred HHhhcccCcc-cccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEEEecCc
Q psy18009 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL 120 (277)
Q Consensus 43 ~~vL~~l~l~-i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIiIsH~l 120 (277)
..+++++++. -.+..+++.||||.+||+-+||-|.++|++||+.+||-+||..+.+.+.+.|.+.+++| .+++||-+|
T Consensus 384 ~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL 463 (501)
T COG3845 384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL 463 (501)
T ss_pred HHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH
Confidence 4578888886 56788899999999999999999999999999999999999999999999999998765 677899999
Q ss_pred chhcc-CceEEEeeCcEEEEecCce
Q psy18009 121 STIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 121 ~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
+|+.. ||||.||.+|+++...+..
T Consensus 464 DEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 464 DEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred HHHHHhhheeeeeeCCceecccccc
Confidence 99997 9999999999998765543
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.39 E-value=4.2e-13 Score=117.29 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=77.4
Q ss_pred hcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHH-HHHHHHhc-CceEEEEecCcchh
Q psy18009 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-SALNRVCA-SRTTIIVAHRLSTI 123 (277)
Q Consensus 46 L~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~-~~l~~l~~-~~tiIiIsH~l~ev 123 (277)
+..++..-...+.++.+|+|++|++.|++++ .+|++++||||+++||+.+...+. .+++.+.+ +.++|++||+ .++
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l 153 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GEL 153 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHH
Confidence 4455555555666788999999999999885 799999999999999999999986 57788765 4588889998 455
Q ss_pred cc-CceEEEeeCcEEEEec
Q psy18009 124 IH-ADEILVMHAGEIVERG 141 (277)
Q Consensus 124 ~~-~Drv~vL~dG~iv~~g 141 (277)
.. ||++.+|++|++..++
T Consensus 154 ~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 154 KAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHhcCCCeEEEEEEEec
Confidence 54 9999999999998664
No 404
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=1.5e-13 Score=118.47 Aligned_cols=103 Identities=25% Similarity=0.453 Sum_probs=90.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhcc-------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCc-eEEE
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCASR-TTII 115 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~-------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~-tiIi 115 (277)
.+.+.++++.+.++.+..|||||.|||-+|...+. ..++||+|||-++||......+.+++.+++..| ++|+
T Consensus 108 ~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vim 187 (248)
T COG4138 108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187 (248)
T ss_pred HHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEE
Confidence 35667888888999999999999999999988764 348999999999999999999999999998765 8888
Q ss_pred EecCcchhcc-CceEEEeeCcEEEEecCceee
Q psy18009 116 VAHRLSTIIH-ADEILVMHAGEIVERGSLFVS 146 (277)
Q Consensus 116 IsH~l~ev~~-~Drv~vL~dG~iv~~g~~~~~ 146 (277)
.+||++.-.. +|+++.|..|++...|...+.
T Consensus 188 s~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 188 SSHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred eccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 9999998765 999999999999998876543
No 405
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1.5e-12 Score=138.87 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=73.5
Q ss_pred ccCCeeeccCHHHHHHHHHHHHhcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcch
Q psy18009 54 PAGKTLALLSGGEKQRVAIARTLLK----------APQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLST 122 (277)
Q Consensus 54 ~~~~~v~~LSgGqrQrv~IAral~~----------~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~e 122 (277)
...+++..|||||+++|+||+||+. +|++|||||||++||+.....+++.|..+... .+|+||||.++.
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 3445788999999999999999986 79999999999999999999999999999764 578889999999
Q ss_pred hcc-CceEEEeeCc
Q psy18009 123 IIH-ADEILVMHAG 135 (277)
Q Consensus 123 v~~-~Drv~vL~dG 135 (277)
... ||+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 886 9999999764
No 406
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.34 E-value=6.9e-12 Score=109.96 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=65.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. ..++++++|+||++.++ ..++...-. . -.+..
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER 112 (214)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHH
Confidence 379999999999999999999999999999998875442 23567899999997554 345543211 1 13444
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 113 ~~~~~~~~~l~~~~l~ 128 (214)
T TIGR02673 113 EIQRRVGAALRQVGLE 128 (214)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 5567788999999885
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.9e-12 Score=118.35 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=71.5
Q ss_pred cCcccccCCeeeccCHHHHHHHHHHHHhc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecC
Q psy18009 49 ISFTVPAGKTLALLSGGEKQRVAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119 (277)
Q Consensus 49 l~l~i~~~~~v~~LSgGqrQrv~IAral~---------~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~ 119 (277)
+.+.++..+.+..||+||||+++||++|+ .+|+++||||||++||+...+.+++.++++. .+++++|+
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~ 247 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD 247 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence 34444555566679999999999999985 7999999999999999999999999998763 56777887
Q ss_pred cchhcc-C---ceEEEeeCcEE
Q psy18009 120 LSTIIH-A---DEILVMHAGEI 137 (277)
Q Consensus 120 l~ev~~-~---Drv~vL~dG~i 137 (277)
.+++.. | ++++.+++|++
T Consensus 248 ~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 248 LADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred chhccchhccCccEEEEeCcEE
Confidence 777765 6 78999999986
No 408
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=9.7e-12 Score=114.85 Aligned_cols=86 Identities=26% Similarity=0.396 Sum_probs=67.3
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccC----CcHHHHhcceEEEcCCc--hhhHHhHHHH-hhc----ccCh
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----VSQASLRQAIGVVPQDT--VLFNNSIKAI-QKN----FVDM 218 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~----~~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~----~~~~ 218 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++.. ......+++|+||||++ .+++.++... ..+ .++.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~ 118 (290)
T PRK13634 39 IGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118 (290)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCH
Confidence 79999999999999999999999999999998853 22445677899999986 5666666432 111 2455
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
....+.+.++++.+++.
T Consensus 119 ~~~~~~~~~~l~~~gL~ 135 (290)
T PRK13634 119 EDAKQKAREMIELVGLP 135 (290)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 66667889999999985
No 409
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=8.9e-12 Score=111.03 Aligned_cols=87 Identities=26% Similarity=0.504 Sum_probs=65.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHhh------cccCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQK------NFVDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~~------~~~~~ 218 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. ...+++|+|+||++.++. .++...-. ...+.
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 110 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE 110 (235)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCH
Confidence 479999999999999999999999999999998865443 446778999999965443 35543211 11344
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
+...+.+.++++.+++.
T Consensus 111 ~~~~~~~~~~l~~~~l~ 127 (235)
T cd03261 111 EEIREIVLEKLEAVGLR 127 (235)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 45566788899999884
No 410
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=8.5e-12 Score=113.93 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=66.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~ 222 (277)
.|+||||||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++ .+++.|+...-. . ..+.+...
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 120 (271)
T PRK13632 41 LGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK 120 (271)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHH
Confidence 7999999999999999999999999999999987555556677899999997 345566643211 1 13444455
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++++++.
T Consensus 121 ~~~~~~l~~~~l~ 133 (271)
T PRK13632 121 DIIDDLAKKVGME 133 (271)
T ss_pred HHHHHHHHHcCCH
Confidence 6788899999884
No 411
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=8e-12 Score=114.72 Aligned_cols=86 Identities=26% Similarity=0.439 Sum_probs=68.3
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~ 222 (277)
+|+||||||||+++|+|+.+|.+|+|+++|+++...+...++++++|+||++ .++..++...-. . -++.+...
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~ 118 (279)
T PRK13650 39 IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK 118 (279)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH
Confidence 7999999999999999999999999999999987666666777899999996 345555543211 1 14555667
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 119 ~~~~~~l~~~gL~ 131 (279)
T PRK13650 119 ERVNEALELVGMQ 131 (279)
T ss_pred HHHHHHHHHCCCH
Confidence 7889999999985
No 412
>PRK10908 cell division protein FtsE; Provisional
Probab=99.32 E-value=9.1e-12 Score=110.03 Aligned_cols=87 Identities=23% Similarity=0.402 Sum_probs=64.3
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchh-hHHhHHHHhh-c--c--cChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVL-FNNSIKAIQK-N--F--VDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~-~n~~~~~~~~-~--~--~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+.. ..+++++|+||++.+ ++.++...-. . + .+..
T Consensus 33 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGD 112 (222)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHH
Confidence 3799999999999999999999999999999988654422 256789999999743 4555543211 1 1 2344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
+..+.+.++++.+++.
T Consensus 113 ~~~~~~~~~l~~~~l~ 128 (222)
T PRK10908 113 DIRRRVSAALDKVGLL 128 (222)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 4456678899999885
No 413
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.32 E-value=1.1e-11 Score=117.41 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=65.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMEN 220 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~ 220 (277)
+|+||||||||+++|+|+.+|++|+|+++|+++...+.. ..+++|+|+||++.++ +.|+... ... -.+.++
T Consensus 37 iG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 116 (343)
T TIGR02314 37 IGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE 116 (343)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHH
Confidence 799999999999999999999999999999998765533 3577899999996444 3444321 111 134556
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
.++.+.++++.+++.
T Consensus 117 ~~~~v~e~l~~vgL~ 131 (343)
T TIGR02314 117 IKRKVTELLALVGLG 131 (343)
T ss_pred HHHHHHHHHHHcCCc
Confidence 667788999999885
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.32 E-value=1.2e-11 Score=108.82 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=64.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. ...+++++|+||++.++ +.++... ... -.+..
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPR 113 (216)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHH
Confidence 379999999999999999999999999999998865432 23567899999997443 3455432 111 12334
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 114 ~~~~~~~~~l~~~~l~ 129 (216)
T TIGR00960 114 DANERVSAALEKVGLE 129 (216)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 4556788899999885
No 415
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.2e-11 Score=113.26 Aligned_cols=86 Identities=23% Similarity=0.393 Sum_probs=67.5
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh----c-ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK----N-FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~----~-~~~~~~~~ 222 (277)
+|.||||||||+++|+|+.+|++|+|.++|+++...+...++++++|+||++ .+++.++...-. . -.+.....
T Consensus 36 ~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 115 (277)
T PRK13652 36 IGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVA 115 (277)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHH
Confidence 7999999999999999999999999999999887655556677899999996 355556543211 1 14555566
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.++++++.+++.
T Consensus 116 ~~~~~~l~~~~l~ 128 (277)
T PRK13652 116 HRVSSALHMLGLE 128 (277)
T ss_pred HHHHHHHHHCCCh
Confidence 7788999999885
No 416
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.3e-11 Score=113.50 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=67.5
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~ 222 (277)
+|+||+|||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++ .+++.++...-. . -...+...
T Consensus 39 ~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 118 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMV 118 (279)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHH
Confidence 7999999999999999999999999999999987666666677899999997 455666643211 1 13445556
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 119 ~~~~~~l~~~gL~ 131 (279)
T PRK13635 119 ERVDQALRQVGME 131 (279)
T ss_pred HHHHHHHHHcCCh
Confidence 6788899988874
No 417
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.31 E-value=1.8e-11 Score=107.62 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=64.8
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHHhh---c--ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAIQK---N--FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~~~---~--~~~~~~~~ 222 (277)
..|.||||||||+++|+|+.+|++|+|.++|+++.. .....+++++|+||++.++. .++...-. . -.+.....
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 114 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT 114 (218)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH
Confidence 379999999999999999999999999999998864 33455678999999975444 45543211 1 12344556
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 115 ~~~~~~l~~~~l~ 127 (218)
T cd03266 115 ARLEELADRLGME 127 (218)
T ss_pred HHHHHHHHHcCCH
Confidence 7788999999884
No 418
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.6e-11 Score=113.13 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=66.9
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHH-hhc----ccCh
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAI-QKN----FVDM 218 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~-~~~----~~~~ 218 (277)
+|+||||||||+++|+|+.+|++|+|+++|+++... ....++++|+||||++ .++..++... ..+ .++.
T Consensus 39 ~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~ 118 (286)
T PRK13646 39 VGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNL 118 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCH
Confidence 799999999999999999999999999999988642 2345677899999986 4665565432 111 2455
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
+...+.+.++++.+++.
T Consensus 119 ~~~~~~~~~~l~~~gL~ 135 (286)
T PRK13646 119 DEVKNYAHRLLMDLGFS 135 (286)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56677889999999985
No 419
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.4e-11 Score=112.75 Aligned_cols=86 Identities=17% Similarity=0.310 Sum_probs=67.3
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCch--hhHHhHHHHhh----c-ccChHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTV--LFNNSIKAIQK----N-FVDMENM 221 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~~--~~n~~~~~~~~----~-~~~~~~~ 221 (277)
+|+||||||||+++|+|+.+|.+|+|+++|.++...+ ...++++|+|+||++. +++.++...-. . ..+.++.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (274)
T PRK13644 34 IGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI 113 (274)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHH
Confidence 7999999999999999999999999999999886544 3556778999999963 55666643211 1 2455566
Q ss_pred HHHHHHHHHhcCCC
Q psy18009 222 FDLLQETCDVIDIP 235 (277)
Q Consensus 222 ~~~~~~~~~~l~I~ 235 (277)
.+.++++++.+++.
T Consensus 114 ~~~~~~~l~~~gl~ 127 (274)
T PRK13644 114 RKRVDRALAEIGLE 127 (274)
T ss_pred HHHHHHHHHHCCCH
Confidence 67788999999985
No 420
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.4e-11 Score=113.64 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=66.2
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccC----CcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccCh
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT----VSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDM 218 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~----~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~ 218 (277)
+|+||||||||+++|+|+.+|++|+|+++|.++.. ......+++|+||||++ .+++.++...-. + -++.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~ 117 (288)
T PRK13643 38 IGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK 117 (288)
T ss_pred ECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCH
Confidence 79999999999999999999999999999999853 22445677899999987 566666643211 1 1344
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
....+.+.++++.+++.
T Consensus 118 ~~~~~~~~~~l~~~~L~ 134 (288)
T PRK13643 118 EKAEKIAAEKLEMVGLA 134 (288)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 55567788999999884
No 421
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.7e-11 Score=109.74 Aligned_cols=88 Identities=27% Similarity=0.481 Sum_probs=67.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh---cc--cChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK---NF--VDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~---~~--~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++........+++++|+||++.++ ..|+...-. .+ .+.+...
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 111 (242)
T cd03295 32 LIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR 111 (242)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 47999999999999999999999999999999887655555667899999997544 345532211 11 2344556
Q ss_pred HHHHHHHHhcCCCC
Q psy18009 223 DLLQETCDVIDIPQ 236 (277)
Q Consensus 223 ~~~~~~~~~l~I~~ 236 (277)
+.+.++++.+++..
T Consensus 112 ~~~~~~l~~l~l~~ 125 (242)
T cd03295 112 ERADELLALVGLDP 125 (242)
T ss_pred HHHHHHHHHcCCCc
Confidence 67889999999864
No 422
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.7e-11 Score=113.07 Aligned_cols=86 Identities=26% Similarity=0.435 Sum_probs=67.2
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMEN 220 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~ 220 (277)
+|+||||||||+++|+|+.+|.+|+|+++|+++...+ ...+++.|+||||++ .+++.++...-. . -++.++
T Consensus 39 ~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 118 (287)
T PRK13637 39 IGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118 (287)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHH
Confidence 7999999999999999999999999999999987543 345677899999986 455566643211 1 145556
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.++++++.+++.
T Consensus 119 ~~~~~~~~l~~~gL~ 133 (287)
T PRK13637 119 IENRVKRAMNIVGLD 133 (287)
T ss_pred HHHHHHHHHHHcCCC
Confidence 667889999999985
No 423
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.30 E-value=1.9e-11 Score=106.91 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=64.3
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhH-HhHHHHhh----c--ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFN-NSIKAIQK----N--FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n-~~~~~~~~----~--~~~~~ 219 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++... .....+++|+|+||++.++. .++...-. . -.+..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 110 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA 110 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHH
Confidence 4799999999999999999999999999999988532 23455778999999975443 45532211 0 12334
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 111 ~~~~~~~~~l~~~~l~ 126 (213)
T cd03262 111 EAEERALELLEKVGLA 126 (213)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 4556788899999885
No 424
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.3e-11 Score=114.21 Aligned_cols=86 Identities=22% Similarity=0.261 Sum_probs=66.4
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----------------cHHHHhcceEEEcCCc--hhhHHhHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----------------SQASLRQAIGVVPQDT--VLFNNSIKAI 211 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----------------~~~~~~~~i~~vpqd~--~~~n~~~~~~ 211 (277)
+|.||||||||+++|+|+.+|.+|+|+++|.++... ....+++.|+||||++ .+++.++...
T Consensus 58 ~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en 137 (320)
T PRK13631 58 IGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 (320)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHH
Confidence 799999999999999999999999999999887532 2345677899999987 4666666432
Q ss_pred -hhc----ccChHHHHHHHHHHHHhcCCC
Q psy18009 212 -QKN----FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 212 -~~~----~~~~~~~~~~~~~~~~~l~I~ 235 (277)
..+ -.+.....+.+.++++.+++.
T Consensus 138 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 111 134555667889999999985
No 425
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=9.9e-13 Score=116.47 Aligned_cols=102 Identities=27% Similarity=0.393 Sum_probs=88.6
Q ss_pred HHhhcccCcccc---cCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-c-eEEEEe
Q psy18009 43 RAILKNISFTVP---AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-R-TTIIVA 117 (277)
Q Consensus 43 ~~vL~~l~l~i~---~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~-tiIiIs 117 (277)
-++|+++|+... ...+...|.-||-|+|.||.|++.+|++||-||||.++++.+..++|+++.++.+. + +++++|
T Consensus 137 IeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s 216 (330)
T COG4170 137 IELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS 216 (330)
T ss_pred HHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEc
Confidence 357899998632 34467789999999999999999999999999999999999999999999999763 4 566699
Q ss_pred cCcchhcc-CceEEEeeCcEEEEecCce
Q psy18009 118 HRLSTIIH-ADEILVMHAGEIVERGSLF 144 (277)
Q Consensus 118 H~l~ev~~-~Drv~vL~dG~iv~~g~~~ 144 (277)
|++..+.. ||++.||-=|+-++.+...
T Consensus 217 ~Dl~~is~W~d~i~VlYCGQ~~ESa~~e 244 (330)
T COG4170 217 HDLQMISQWADKINVLYCGQTVESAPSE 244 (330)
T ss_pred ccHHHHHHHhhheEEEEecccccccchh
Confidence 99999986 9999999999988876643
No 426
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.29 E-value=1.3e-11 Score=109.69 Aligned_cols=86 Identities=20% Similarity=0.394 Sum_probs=65.5
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhh---cccChHHHHHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQK---NFVDMENMFDLLQ 226 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~---~~~~~~~~~~~~~ 226 (277)
.|+||||||||+++|+|+.+|++|+|.++|.++...++...+++|+|+||++.++..++...-. .+...+...+.+.
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~ 118 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL 118 (225)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHH
Confidence 7999999999999999999999999999999887666555677899999997666555543211 1111223345677
Q ss_pred HHHHhcCCC
Q psy18009 227 ETCDVIDIP 235 (277)
Q Consensus 227 ~~~~~l~I~ 235 (277)
++++.+++.
T Consensus 119 ~~l~~~~l~ 127 (225)
T PRK10247 119 DDLERFALP 127 (225)
T ss_pred HHHHHcCCC
Confidence 899999885
No 427
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.7e-11 Score=109.92 Aligned_cols=87 Identities=33% Similarity=0.444 Sum_probs=65.1
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhc-ccChHHHHHHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKN-FVDMENMFDLLQE 227 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~-~~~~~~~~~~~~~ 227 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+...++++++|+||++.++..++...-.. ........+.+.+
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 113 (241)
T PRK14250 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY 113 (241)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHH
Confidence 379999999999999999999999999999998876555566778999999987766555432111 0001122456778
Q ss_pred HHHhcCCC
Q psy18009 228 TCDVIDIP 235 (277)
Q Consensus 228 ~~~~l~I~ 235 (277)
+++.+++.
T Consensus 114 ~l~~~~l~ 121 (241)
T PRK14250 114 YLSIVGLN 121 (241)
T ss_pred HHHHcCCC
Confidence 89998884
No 428
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2.3e-11 Score=108.11 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=65.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhhH-HhHHHH-hhc----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+.. ..+++|+|+||++.++. .|+... ... -.+.+
T Consensus 36 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA 115 (233)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHH
Confidence 4799999999999999999999999999999988654432 34678999999975553 455432 111 12344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 116 ~~~~~~~~~l~~~~l~ 131 (233)
T cd03258 116 EIEERVLELLELVGLE 131 (233)
T ss_pred HHHHHHHHHHHHCCCh
Confidence 4566788999999885
No 429
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.3e-11 Score=107.35 Aligned_cols=86 Identities=26% Similarity=0.313 Sum_probs=64.0
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---H-hcceEEEcCCchhh-HHhHHHHhh-----cccChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L-RQAIGVVPQDTVLF-NNSIKAIQK-----NFVDME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~-~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~ 219 (277)
.|+||||||||+++|+|+.+|++|+|+++|+++...+... . +++|+|+||++.++ +.|+...-. .-.+.+
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 120 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA 120 (233)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 7999999999999999999999999999999987655332 2 36799999996433 335433211 112344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 121 ~~~~~~~~~l~~~gl~ 136 (233)
T PRK11629 121 EINSRALEMLAAVGLE 136 (233)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 5567788999999985
No 430
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.28 E-value=1.9e-11 Score=108.28 Aligned_cols=87 Identities=28% Similarity=0.400 Sum_probs=65.2
Q ss_pred hcCCCCCchhHHHHHHhccc-----cCceeEEEECCEeccCCc--HHHHhcceEEEcCCchhhHHhHHHHhh------cc
Q psy18009 149 QVGQSGAGKSTIIRLLFRFY-----DVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLFNNSIKAIQK------NF 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~-----~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~n~~~~~~~~------~~ 215 (277)
.+|+||||||||+++|+|+. +|.+|+|.++|+++...+ ....+++++|+||++.+++.|+...-. +.
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~ 110 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI 110 (227)
T ss_pred EECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCC
Confidence 47999999999999999999 899999999999886544 345567899999997666666643211 11
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.+.....+.+.++++.+++.
T Consensus 111 ~~~~~~~~~~~~~l~~~~l~ 130 (227)
T cd03260 111 KLKEELDERVEEALRKAALW 130 (227)
T ss_pred CcHHHHHHHHHHHHHHcCCC
Confidence 11122456778889998885
No 431
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.6e-11 Score=114.72 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=65.1
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCchhhH-HhHHHH-hhc----ccChHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDMEN 220 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~~ 220 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++...+.. ..+++|+|+||++.++. .++... ... -.+.+.
T Consensus 37 iG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~ 116 (343)
T PRK11153 37 IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAE 116 (343)
T ss_pred ECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHH
Confidence 799999999999999999999999999999998765533 34678999999965443 455322 111 134445
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.+.++++.+++.
T Consensus 117 ~~~~~~~~l~~~gL~ 131 (343)
T PRK11153 117 IKARVTELLELVGLS 131 (343)
T ss_pred HHHHHHHHHHHcCCc
Confidence 567788999999885
No 432
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.28 E-value=2.3e-11 Score=106.91 Aligned_cols=87 Identities=25% Similarity=0.323 Sum_probs=63.8
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH----HHhcceEEEcCCchhh-HHhHHHHhh-c--c--cCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA----SLRQAIGVVPQDTVLF-NNSIKAIQK-N--F--VDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~----~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~--~~~ 218 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...++. ..+++++|+||++.++ +.++...-. . + .+.
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 114 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK 114 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH
Confidence 4799999999999999999999999999999988654422 2356799999997544 346543211 1 1 223
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
....+.+.++++.+++.
T Consensus 115 ~~~~~~~~~~l~~~~l~ 131 (218)
T cd03255 115 KERRERAEELLERVGLG 131 (218)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34456788899999885
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=1.8e-11 Score=108.55 Aligned_cols=87 Identities=26% Similarity=0.403 Sum_probs=77.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC-cHHHHhcceEEEcCC-------chhhHHhHHHHhhcccChHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQAIGVVPQD-------TVLFNNSIKAIQKNFVDMEN 220 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~~i~~vpqd-------~~~~n~~~~~~~~~~~~~~~ 220 (277)
.+|++|||||||+|+|.||.++++|+|+++|..+... ....+|+.+|+|||+ .++.|++++-.+-.-.++..
T Consensus 33 iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~e 112 (240)
T COG1126 33 IIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE 112 (240)
T ss_pred EECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHH
Confidence 4799999999999999999999999999999877543 466789999999998 47888888877667789999
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
.++.|.++.++.++.
T Consensus 113 A~~~A~~lL~~VGL~ 127 (240)
T COG1126 113 AREKALELLEKVGLA 127 (240)
T ss_pred HHHHHHHHHHHcCch
Confidence 999999999999987
No 434
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.27 E-value=3.4e-11 Score=105.47 Aligned_cols=87 Identities=28% Similarity=0.383 Sum_probs=64.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHH-hhc----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAI-QKN----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~-~~~----~~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...++ ...+++++|+||++.++. .++... ... -.+.+
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 111 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR 111 (214)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHH
Confidence 479999999999999999999999999999998865442 235678999999975443 455322 111 12344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 112 ~~~~~~~~~l~~~~l~ 127 (214)
T cd03292 112 EIRKRVPAALELVGLS 127 (214)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 4556778899998874
No 435
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.27 E-value=1.7e-11 Score=107.87 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=64.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|.++... ....+++++|+||++.++ +.++...-. . -.+..+..
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 111 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIK 111 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 4799999999999999999999999999999987643 244566799999997555 455543211 1 12334445
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 112 ~~~~~~l~~~~l~ 124 (220)
T cd03263 112 EEVELLLRVLGLT 124 (220)
T ss_pred HHHHHHHHHcCCH
Confidence 6788899998884
No 436
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.2e-11 Score=105.77 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=63.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c--c--cChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N--F--VDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~--~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. .+++++|+||++.++ +.++...-. . . .+.....
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 108 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR 108 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH
Confidence 479999999999999999999999999999998864332 346799999996433 345543211 1 1 2344556
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 109 ~~~~~~l~~~~l~ 121 (213)
T cd03259 109 ARVRELLELVGLE 121 (213)
T ss_pred HHHHHHHHHcCCh
Confidence 6788999999885
No 437
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.27 E-value=2.6e-11 Score=108.26 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=63.5
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhh-HHhHHHHhh-c---------
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLF-NNSIKAIQK-N--------- 214 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--------- 214 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. ..++++++|+||++.++ +.|+...-. .
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 112 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWR 112 (243)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchh
Confidence 379999999999999999999999999999998865442 23567899999996443 345543211 1
Q ss_pred -cc--ChHHHHHHHHHHHHhcCCC
Q psy18009 215 -FV--DMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 215 -~~--~~~~~~~~~~~~~~~l~I~ 235 (277)
+. ..+...+.+.++++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~ 136 (243)
T TIGR02315 113 SLLGRFSEEDKERALSALERVGLA 136 (243)
T ss_pred hhhccccHHHHHHHHHHHHHcCcH
Confidence 11 1234456778889999884
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=99.27 E-value=1e-11 Score=129.81 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=66.9
Q ss_pred CeeeccCHHHHH------HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC-ceEEEEecCcchhccCceE
Q psy18009 57 KTLALLSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHADEI 129 (277)
Q Consensus 57 ~~v~~LSgGqrQ------rv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~-~tiIiIsH~l~ev~~~Drv 129 (277)
.++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+... .++|+|||+.+....||++
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~ 863 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYV 863 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeE
Confidence 467889999999 455666888999999999999999999999999999987654 5888999998644459999
Q ss_pred EEeeC
Q psy18009 130 LVMHA 134 (277)
Q Consensus 130 ~vL~d 134 (277)
++|+.
T Consensus 864 ~~l~~ 868 (880)
T PRK03918 864 IRVSL 868 (880)
T ss_pred EEEEe
Confidence 99973
No 439
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.2e-11 Score=108.53 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=63.9
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc---HHHHhcceEEEcCCchhh-HHhHHHH-hhc---------
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAIGVVPQDTVLF-NNSIKAI-QKN--------- 214 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~---~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~--------- 214 (277)
.+|+||||||||+++|+|+.+|++|+|+++|+++...+ ....+++++|+||++.++ +.++... ...
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 111 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111 (241)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhh
Confidence 47999999999999999999999999999999887654 344567899999996443 3555422 110
Q ss_pred -cc--ChHHHHHHHHHHHHhcCCC
Q psy18009 215 -FV--DMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 215 -~~--~~~~~~~~~~~~~~~l~I~ 235 (277)
+. ......+.+.++++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~ 135 (241)
T cd03256 112 SLFGLFPKEEKQRALAALERVGLL 135 (241)
T ss_pred hhcccCcHHHHHHHHHHHHHcCCh
Confidence 11 1234456678889999885
No 440
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.26 E-value=8.5e-12 Score=113.65 Aligned_cols=87 Identities=21% Similarity=0.460 Sum_probs=69.8
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH------h-hcccC--h
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI------Q-KNFVD--M 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~------~-~~~~~--~ 218 (277)
.+|+||||||||+++|+|+.+|.+|+|+++|+++...++..+++.++||||.+ .-++.+|..+ + .+|.. .
T Consensus 33 iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~ 112 (258)
T COG1120 33 ILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112 (258)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCC
Confidence 47999999999999999999999999999999999999999999999999984 5556666432 1 13333 3
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
++..+.+.+.++.+++.
T Consensus 113 ~~D~~~v~~aL~~~~~~ 129 (258)
T COG1120 113 KEDEEIVEEALELLGLE 129 (258)
T ss_pred HhHHHHHHHHHHHhCcH
Confidence 44445688888888875
No 441
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.26 E-value=4.3e-11 Score=107.51 Aligned_cols=87 Identities=29% Similarity=0.413 Sum_probs=65.0
Q ss_pred hcCCCCCchhHHHHHHhccccCc-----eeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHHh------hcc
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAIQ------KNF 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~-----~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~~------~~~ 215 (277)
.+|.||||||||+++|.|+.+|. +|+|.++|+++... .....+++|+|+||++.++..++...- .++
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~ 111 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGI 111 (247)
T ss_pred EECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCC
Confidence 37999999999999999999987 99999999988642 234556789999999755544543211 122
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.+.....+.+.++++.+++.
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~ 131 (247)
T TIGR00972 112 KDKKELDEIVEESLKKAALW 131 (247)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 33445566788899999885
No 442
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.26 E-value=3.9e-11 Score=106.75 Aligned_cols=87 Identities=22% Similarity=0.325 Sum_probs=64.1
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh------cc---c-
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK------NF---V- 216 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~------~~---~- 216 (277)
..|+||||||||+++|+|+.+|.+|+|.++|+++...+... .+++++|+||++.++. .|+...-. .. .
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~ 110 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL 110 (236)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc
Confidence 47999999999999999999999999999999887655433 3567999999964433 35542211 10 0
Q ss_pred -----ChHHHHHHHHHHHHhcCCC
Q psy18009 217 -----DMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 217 -----~~~~~~~~~~~~~~~l~I~ 235 (277)
+.....+.+.++++.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~ 134 (236)
T cd03219 111 ARARREEREARERAEELLERVGLA 134 (236)
T ss_pred ccccccHHHHHHHHHHHHHHcCcc
Confidence 2334456788999999885
No 443
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4e-11 Score=110.08 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=65.1
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-HHHHhcceEEEcCCch--hhHHhHHHH-hhc----ccChHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQDTV--LFNNSIKAI-QKN----FVDMENM 221 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~vpqd~~--~~n~~~~~~-~~~----~~~~~~~ 221 (277)
+|.||||||||+++|+|+.+|++|+|.++|.++...+ ....+++|+|+||++. +++.++... ... -++....
T Consensus 42 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ 121 (280)
T PRK13633 42 LGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHH
Confidence 7999999999999999999999999999999886433 3456778999999973 455455322 111 1344455
Q ss_pred HHHHHHHHHhcCCC
Q psy18009 222 FDLLQETCDVIDIP 235 (277)
Q Consensus 222 ~~~~~~~~~~l~I~ 235 (277)
.+.++++++.+++.
T Consensus 122 ~~~~~~~l~~~gL~ 135 (280)
T PRK13633 122 RERVDESLKKVGMY 135 (280)
T ss_pred HHHHHHHHHHCCCH
Confidence 67788999999885
No 444
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.25 E-value=5.6e-11 Score=105.30 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=63.0
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH----HhcceEEEcCCchhhH-HhHHHHh-hc----ccChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS----LRQAIGVVPQDTVLFN-NSIKAIQ-KN----FVDME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~----~~~~i~~vpqd~~~~n-~~~~~~~-~~----~~~~~ 219 (277)
.|+||||||||+++|+|+.+|++|+|.++|+++...+... .+++++|+||++.++. .++...- .. -.+..
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~ 121 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR 121 (228)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHH
Confidence 7999999999999999999999999999999887655332 2357999999964432 3443221 10 12334
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 122 ~~~~~~~~~l~~~~l~ 137 (228)
T PRK10584 122 QSRNGAKALLEQLGLG 137 (228)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 4567788999999885
No 445
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6e-11 Score=108.00 Aligned_cols=137 Identities=25% Similarity=0.397 Sum_probs=95.1
Q ss_pred HHhhcccccccCCCCCccccccCceEEEeeeeeeeCchHHhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEE
Q psy18009 5 FDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84 (277)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~nvsf~Y~~~~~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilI 84 (277)
..+++++.++.+.+.++. .+++++|++++|+ +..+|++++|++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~------------------------ 51 (268)
T PRK14248 2 VQMVREKIEIAPFPEAKE-----HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTA------------------------ 51 (268)
T ss_pred hhHHhhHhhcccCCCCCC-----ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEE------------------------
Confidence 457788888776554443 3699999999995 3558888888777665532
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEEeeCcEEEEecCceeeehhcCCCCCchhHHHHHH
Q psy18009 85 LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLL 164 (277)
Q Consensus 85 LDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~vL~dG~iv~~g~~~~~~~~~G~~GsGkttL~~~l 164 (277)
.+|.||||||||+++|
T Consensus 52 ----------------------------------------------------------------i~G~nGsGKSTLl~~l 67 (268)
T PRK14248 52 ----------------------------------------------------------------LIGPSGCGKSTFLRSI 67 (268)
T ss_pred ----------------------------------------------------------------EECCCCCCHHHHHHHH
Confidence 2799999999999999
Q ss_pred hcccc-----CceeEEEECCEeccCCc--HHHHhcceEEEcCCchhhHHhHHHH-hhc--c--c-ChHHHHHHHHHHHHh
Q psy18009 165 FRFYD-----VESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLFNNSIKAI-QKN--F--V-DMENMFDLLQETCDV 231 (277)
Q Consensus 165 ~Gl~~-----~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~n~~~~~~-~~~--~--~-~~~~~~~~~~~~~~~ 231 (277)
+|+.+ |++|+|.++|+++...+ ....+++|+|+||++.+++.++... ... + . ......+.+.+.++.
T Consensus 68 ~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (268)
T PRK14248 68 NRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTK 147 (268)
T ss_pred HhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99864 68999999999886422 3345678999999976665554321 111 1 1 112234556667777
Q ss_pred cCCC
Q psy18009 232 IDIP 235 (277)
Q Consensus 232 l~I~ 235 (277)
+++.
T Consensus 148 ~~l~ 151 (268)
T PRK14248 148 AALW 151 (268)
T ss_pred cCCC
Confidence 7663
No 446
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=3.8e-11 Score=109.98 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=64.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC--cHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~ 219 (277)
.+|+||||||||+++|+|+.++.+|+|.++|+++... +....++.|+|+||++ .+++.++...-. + -...+
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~ 112 (275)
T PRK13639 33 LLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE 112 (275)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHH
Confidence 3799999999999999999999999999999988532 2345677899999996 345555533211 1 12334
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 113 ~~~~~~~~~l~~~~L~ 128 (275)
T PRK13639 113 EVEKRVKEALKAVGME 128 (275)
T ss_pred HHHHHHHHHHHHCCCc
Confidence 4456788999999985
No 447
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.25 E-value=2.7e-11 Score=117.06 Aligned_cols=86 Identities=22% Similarity=0.430 Sum_probs=67.8
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhh-------cccC--hH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQK-------NFVD--ME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~-------~~~~--~~ 219 (277)
+|+||||||||+++|+|+.+|.+|+|+++|+++...++..++++|+||||++.+ ++.++...-. ..+. .+
T Consensus 35 iGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~ 114 (402)
T PRK09536 35 VGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE 114 (402)
T ss_pred ECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCH
Confidence 799999999999999999999999999999999877777778889999999743 5666643211 1112 34
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.++++++.+++.
T Consensus 115 ~~~~~v~~~le~vgl~ 130 (402)
T PRK09536 115 TDRAAVERAMERTGVA 130 (402)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 4567788999999884
No 448
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.25 E-value=4.9e-11 Score=106.59 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=64.5
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--HHHHhcceEEEcCCchhh-HHhHHHHhh-c-----ccChH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--QASLRQAIGVVPQDTVLF-NNSIKAIQK-N-----FVDME 219 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~-----~~~~~ 219 (277)
.+|+||||||||+++|+|+.+|++|+|+++|+++...+ ....+++++|+||++.++ ..++...-. . -.+..
T Consensus 32 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 111 (240)
T PRK09493 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE 111 (240)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHH
Confidence 47999999999999999999999999999999886532 344567899999996433 345532211 1 12344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 112 ~~~~~~~~~l~~~gl~ 127 (240)
T PRK09493 112 EAEKQARELLAKVGLA 127 (240)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 4556788999999885
No 449
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=3.2e-11 Score=107.78 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=62.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c--c------cCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N--F------VDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~--~------~~~ 218 (277)
.+|+||||||||+++|+|+.+|++|+|+++|+++...+. .+++++|+||++.++ +.|+...-. . . .+.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 110 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPE 110 (239)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCH
Confidence 379999999999999999999999999999998764332 246799999997554 356543211 1 1 123
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
....+.+.++++.+++.
T Consensus 111 ~~~~~~~~~~l~~~~l~ 127 (239)
T cd03296 111 AEIRAKVHELLKLVQLD 127 (239)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 33456678889999874
No 450
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.2e-11 Score=109.12 Aligned_cols=86 Identities=33% Similarity=0.470 Sum_probs=64.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch--hhHHhHHHH-hhc----ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNSIKAI-QKN----FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~--~~n~~~~~~-~~~----~~~~~~~~ 222 (277)
.|+||||||||+++|+|+.+|.+|+|+++|+++...+...++++|+|+||++. +++.++... ... -...+...
T Consensus 41 ~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 120 (269)
T PRK13648 41 VGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHH
Confidence 79999999999999999999999999999999876665667788999999973 444444221 111 12334445
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 121 ~~~~~~l~~~~l~ 133 (269)
T PRK13648 121 RRVSEALKQVDML 133 (269)
T ss_pred HHHHHHHHHcCCc
Confidence 6678889998875
No 451
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=4.2e-11 Score=107.07 Aligned_cols=87 Identities=26% Similarity=0.407 Sum_probs=64.9
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH-HHHhcceEEEcCCchhhH-HhHHHHhhc------ccChHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFN-NSIKAIQKN------FVDMEN 220 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~vpqd~~~~n-~~~~~~~~~------~~~~~~ 220 (277)
..|+||||||||+++|+|+.+|++|+|.++|.++...++ ...+++++|+||++.++. .++...-.. -.+..+
T Consensus 34 l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (241)
T PRK10895 34 LLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ 113 (241)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHH
Confidence 379999999999999999999999999999998876554 334678999999964443 455322110 123445
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.+.++++.+++.
T Consensus 114 ~~~~~~~~l~~~~l~ 128 (241)
T PRK10895 114 REDRANELMEEFHIE 128 (241)
T ss_pred HHHHHHHHHHHcCCH
Confidence 567788999999875
No 452
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.25 E-value=3.4e-11 Score=106.05 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=63.8
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH---H-hcceEEEcCCchhh-HHhHHHHhh-----cccCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---L-RQAIGVVPQDTVLF-NNSIKAIQK-----NFVDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~---~-~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~ 218 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+... . +++|+|+||++.++ +.++...-. .-.+.
T Consensus 36 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 115 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV 115 (221)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCH
Confidence 47999999999999999999999999999999886554322 2 36799999996544 345543211 11233
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
.+..+.+.++++.+++.
T Consensus 116 ~~~~~~~~~~l~~~~l~ 132 (221)
T TIGR02211 116 KEAKERAYEMLEKVGLE 132 (221)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 44456778999999885
No 453
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.6e-11 Score=109.87 Aligned_cols=86 Identities=19% Similarity=0.336 Sum_probs=66.2
Q ss_pred cCCCCCchhHHHHHHhccccCce---eEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-----cccChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-----NFVDME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-----~~~~~~ 219 (277)
+|+||||||||+++|+|+.+|.. |+|.++|+++........+++|+|+||++ .+++.++...-. .-.+..
T Consensus 39 ~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~ 118 (282)
T PRK13640 39 IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRP 118 (282)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHH
Confidence 79999999999999999999876 89999999987655555677899999997 355666643211 113344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
+..+.+.++++.+++.
T Consensus 119 ~~~~~~~~~l~~~~L~ 134 (282)
T PRK13640 119 EMIKIVRDVLADVGML 134 (282)
T ss_pred HHHHHHHHHHHHCCCh
Confidence 5556788999999985
No 454
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.24 E-value=6.8e-11 Score=107.56 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=63.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHH---HHhcceEEEcCCch--h-hHHhHHHH-h---hc--ccC
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQDTV--L-FNNSIKAI-Q---KN--FVD 217 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~i~~vpqd~~--~-~n~~~~~~-~---~~--~~~ 217 (277)
.|+||||||||+++|+|+.+|.+|+|.++|+++...+.. ..+++|+|+||++. + .+.++... . .. -++
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 122 (265)
T TIGR02769 43 LGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122 (265)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCC
Confidence 799999999999999999999999999999988754432 34677999999962 2 23454321 1 11 133
Q ss_pred hHHHHHHHHHHHHhcCCC
Q psy18009 218 MENMFDLLQETCDVIDIP 235 (277)
Q Consensus 218 ~~~~~~~~~~~~~~l~I~ 235 (277)
.....+.+.++++.+++.
T Consensus 123 ~~~~~~~~~~~l~~~gl~ 140 (265)
T TIGR02769 123 ESEQKARIAELLDMVGLR 140 (265)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 445567788999999885
No 455
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=4.5e-11 Score=109.58 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=65.8
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc--hhhHHhHHHHhh-c----ccChHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-~----~~~~~~~~ 222 (277)
+|.||||||||+++|+|+.+|.+|+|.++|+++...+....+++|+|+||++ .+++.++...-. + -.......
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~ 118 (277)
T PRK13642 39 IGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI 118 (277)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHH
Confidence 7999999999999999999999999999999887655556678899999996 355556643211 1 12334445
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.++++++.+++.
T Consensus 119 ~~~~~~l~~~~l~ 131 (277)
T PRK13642 119 KRVDEALLAVNML 131 (277)
T ss_pred HHHHHHHHHCCCH
Confidence 6778888888874
No 456
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.24 E-value=5.2e-11 Score=113.22 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=66.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c----ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N----FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~----~~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...++. +++|+||||++.+| +.|+...-. + -.+.+..+
T Consensus 35 l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~ 112 (353)
T TIGR03265 35 LLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA 112 (353)
T ss_pred EECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH
Confidence 3799999999999999999999999999999998755543 56899999997555 456643211 1 13445567
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.++++++.+++.
T Consensus 113 ~~~~~~l~~l~L~ 125 (353)
T TIGR03265 113 ERVAELLDLVGLP 125 (353)
T ss_pred HHHHHHHHHcCCC
Confidence 7899999999985
No 457
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=5.4e-11 Score=109.63 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=65.2
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHHhh-----cccCh
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAIQK-----NFVDM 218 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~~~-----~~~~~ 218 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++... .....+++|+|+||++ .+++.++...-. .....
T Consensus 39 iG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 118 (287)
T PRK13641 39 VGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSE 118 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCH
Confidence 799999999999999999999999999999988532 2344567899999996 355555543211 12344
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
+...+.++++++.+++.
T Consensus 119 ~~~~~~~~~~l~~~gL~ 135 (287)
T PRK13641 119 DEAKEKALKWLKKVGLS 135 (287)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 55566789999999885
No 458
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.4e-11 Score=104.50 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=64.1
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHH-h---hc-ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAI-Q---KN-FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~-~---~~-~~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|.++... ....+++++|+||++.++. .++... . .. -.+.+...
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 109 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERR 109 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHH
Confidence 4799999999999999999999999999999987542 3345678999999964433 454321 1 11 13344556
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 110 ~~~~~~l~~~~l~ 122 (220)
T cd03265 110 ERIDELLDFVGLL 122 (220)
T ss_pred HHHHHHHHHcCCH
Confidence 7789999999985
No 459
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.24 E-value=6.2e-11 Score=110.04 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=62.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-----cccChHHHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-----NFVDMENMFD 223 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~~~~~ 223 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++... ....+++|+|+||++.++ +.|+...-. .-.+.+...+
T Consensus 36 ~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 114 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA 114 (303)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHH
Confidence 799999999999999999999999999999987543 344567899999996443 345532211 0134444456
Q ss_pred HHHHHHHhcCCC
Q psy18009 224 LLQETCDVIDIP 235 (277)
Q Consensus 224 ~~~~~~~~l~I~ 235 (277)
.++++++.+++.
T Consensus 115 ~~~~ll~~~~l~ 126 (303)
T TIGR01288 115 VIPSLLEFARLE 126 (303)
T ss_pred HHHHHHHHCCCh
Confidence 677888888874
No 460
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.24 E-value=5.7e-11 Score=108.36 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=63.0
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHh-h---c--ccChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQ-K---N--FVDME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~-~---~--~~~~~ 219 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++...+. ..++++|+|+||++.++. .++...- . . ..+..
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 118 (269)
T PRK11831 39 MGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP 118 (269)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHH
Confidence 79999999999999999999999999999998865443 234667999999964443 3553221 1 1 12344
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 119 ~~~~~~~~~l~~~gl~ 134 (269)
T PRK11831 119 LLHSTVMMKLEAVGLR 134 (269)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 4456677888998885
No 461
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.24 E-value=7.2e-11 Score=106.72 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=63.5
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----------c---HHHHhcceEEEcCCchhhH-HhHHHH-hh-
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----------S---QASLRQAIGVVPQDTVLFN-NSIKAI-QK- 213 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----------~---~~~~~~~i~~vpqd~~~~n-~~~~~~-~~- 213 (277)
+|.||||||||+++|+|+.++++|+|+++|.++... . ....+++++|+||++.++. .++... ..
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~ 116 (257)
T PRK10619 37 IGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 116 (257)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHH
Confidence 799999999999999999999999999999987531 1 2345678999999964432 344322 11
Q ss_pred --cc--cChHHHHHHHHHHHHhcCCCC
Q psy18009 214 --NF--VDMENMFDLLQETCDVIDIPQ 236 (277)
Q Consensus 214 --~~--~~~~~~~~~~~~~~~~l~I~~ 236 (277)
.+ .+.....+.+.++++++++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 117 PIQVLGLSKQEARERAVKYLAKVGIDE 143 (257)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCCh
Confidence 11 334455677889999999864
No 462
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.24 E-value=7.6e-11 Score=105.84 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=63.5
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc--------HHHHhcceEEEcCCchhh-HHhHHHH-h-----h
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS--------QASLRQAIGVVPQDTVLF-NNSIKAI-Q-----K 213 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~--------~~~~~~~i~~vpqd~~~~-n~~~~~~-~-----~ 213 (277)
.+|+||||||||+++|+|+.++++|+|.++|+++...+ ....+++++|+||++.++ +.++... . .
T Consensus 34 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999999999999999886421 234567899999996444 3444321 1 0
Q ss_pred cccChHHHHHHHHHHHHhcCCC
Q psy18009 214 NFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
.-.+.....+.+.++++.+++.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gl~ 135 (250)
T PRK11264 114 KGEPKEEATARARELLAKVGLA 135 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc
Confidence 1133444556788899999885
No 463
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.24 E-value=4.7e-11 Score=106.52 Aligned_cols=87 Identities=23% Similarity=0.426 Sum_probs=64.0
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhh-c--c--cChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQK-N--F--VDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~-~--~--~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|.++...+... .+.++|+||++.+ ++.++...-. . . .+.++..
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~ 110 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR 110 (236)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH
Confidence 47999999999999999999999999999999886544333 3579999999643 4455532211 1 1 2334456
Q ss_pred HHHHHHHHhcCCCC
Q psy18009 223 DLLQETCDVIDIPQ 236 (277)
Q Consensus 223 ~~~~~~~~~l~I~~ 236 (277)
+.+.++++.+++..
T Consensus 111 ~~~~~~l~~~gl~~ 124 (236)
T TIGR03864 111 ERIAALLARLGLAE 124 (236)
T ss_pred HHHHHHHHHcCChh
Confidence 67889999998863
No 464
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.23 E-value=1.3e-11 Score=131.16 Aligned_cols=78 Identities=28% Similarity=0.421 Sum_probs=69.1
Q ss_pred CCeeeccCHHHHHHHHHHHHhc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCcchhccCceEEE
Q psy18009 56 GKTLALLSGGEKQRVAIARTLL----KAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILV 131 (277)
Q Consensus 56 ~~~v~~LSgGqrQrv~IAral~----~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~~~tiIiIsH~l~ev~~~Drv~v 131 (277)
...+..|||||+|+++||++++ .+|+++||||||++||+.....+.++|+.+.+..++|+|||++..+..||+++.
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence 3567889999999999999984 678999999999999999999999999999777788899999987656999976
Q ss_pred ee
Q psy18009 132 MH 133 (277)
Q Consensus 132 L~ 133 (277)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 53
No 465
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.23 E-value=7.8e-11 Score=107.35 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=63.4
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch---hhHHhHHHH-h----hc-ccChHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV---LFNNSIKAI-Q----KN-FVDMEN 220 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~---~~n~~~~~~-~----~~-~~~~~~ 220 (277)
+|+||||||||+++|+|+.+|.+|+|.++|.++........+++|+|+||++. ..+.++... . .. -.....
T Consensus 45 ~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 124 (267)
T PRK15112 45 IGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124 (267)
T ss_pred EcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHH
Confidence 79999999999999999999999999999998865444455568999999973 222333221 1 11 123445
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.+.++++.+++.
T Consensus 125 ~~~~~~~~l~~~~l~ 139 (267)
T PRK15112 125 REKQIIETLRQVGLL 139 (267)
T ss_pred HHHHHHHHHHHcCCC
Confidence 556788999999984
No 466
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.5e-11 Score=107.39 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=65.1
Q ss_pred hcCCCCCchhHHHHHHhcccc---CceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhh------ccc-Ch
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYD---VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQK------NFV-DM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~------~~~-~~ 218 (277)
.+|+||||||||+++|+|+.+ |.+|+|.++|+++...+....+++|+|+||++.+++.++...-. ++. +.
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~ 112 (246)
T PRK14269 33 LIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNK 112 (246)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccCh
Confidence 379999999999999999974 68999999999987655556677899999997666655543211 122 22
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
+...+.+.++++.+++.
T Consensus 113 ~~~~~~~~~~l~~~~l~ 129 (246)
T PRK14269 113 DEEEALVVDCLQKVGLF 129 (246)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34555678889998884
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.23 E-value=4.9e-11 Score=104.98 Aligned_cols=86 Identities=28% Similarity=0.523 Sum_probs=61.3
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHHHhhcccChHHHHHHHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQET 228 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 228 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+....+++++|+||++.++..++...-....... ..+.+.++
T Consensus 35 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~-~~~~~~~~ 113 (220)
T cd03245 35 IIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA-DDERILRA 113 (220)
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCC-CHHHHHHH
Confidence 37999999999999999999999999999999886555555667899999998766656543211111111 12334556
Q ss_pred HHhcCCC
Q psy18009 229 CDVIDIP 235 (277)
Q Consensus 229 ~~~l~I~ 235 (277)
++.+++.
T Consensus 114 l~~~~l~ 120 (220)
T cd03245 114 AELAGVT 120 (220)
T ss_pred HHHcCcH
Confidence 6666653
No 468
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.23 E-value=6.3e-11 Score=103.82 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=63.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~~ 222 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+.. +++++|+||++.++ +.++... ... -....+..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 108 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEID 108 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHH
Confidence 4799999999999999999999999999999988644322 35799999996544 3455322 111 13445556
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++.+++.
T Consensus 109 ~~~~~~l~~~~l~ 121 (213)
T cd03301 109 ERVREVAELLQIE 121 (213)
T ss_pred HHHHHHHHHcCCH
Confidence 7788899999885
No 469
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.23 E-value=6.5e-11 Score=107.39 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=65.4
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHH-hhc----ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAI-QKN----FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~-~~~----~~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|.+|+|.++|.++...+...++++++|+||++.+ ++.++... ... ..+.+...
T Consensus 33 i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 112 (258)
T PRK13548 33 ILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD 112 (258)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH
Confidence 3799999999999999999999999999999988765655566789999999643 55555432 111 11233445
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.++++++.+++.
T Consensus 113 ~~~~~~l~~~~l~ 125 (258)
T PRK13548 113 ALVAAALAQVDLA 125 (258)
T ss_pred HHHHHHHHHcCCH
Confidence 6678899998885
No 470
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.23 E-value=5.4e-11 Score=108.19 Aligned_cols=86 Identities=19% Similarity=0.387 Sum_probs=64.0
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-c------cc--ChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-N------FV--DME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-~------~~--~~~ 219 (277)
+|+||||||||+++|+|+.++++|+|.++|+++...+...++++|+|+||++.++ +.++...-. . +. ..+
T Consensus 39 ~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 118 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK 118 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCH
Confidence 7999999999999999999999999999999887655556667899999997443 445533211 1 11 113
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 119 ~~~~~~~~~l~~~~l~ 134 (265)
T PRK10253 119 EDEEAVTKAMQATGIT 134 (265)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 3455678899988885
No 471
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.9e-11 Score=116.48 Aligned_cols=79 Identities=32% Similarity=0.449 Sum_probs=70.8
Q ss_pred cCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHH-HHhcC-ceEEEEecCcchhccCceEEEeeCcEEEE
Q psy18009 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCAS-RTTIIVAHRLSTIIHADEILVMHAGEIVE 139 (277)
Q Consensus 62 LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~-~l~~~-~tiIiIsH~l~ev~~~Drv~vL~dG~iv~ 139 (277)
||-|||+|+++--|++-+.+|++|||=-|.-||.-++.+++.+- .++++ +|++.||||-.....|||++.|++|++++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999999988765 45665 57777999977777799999999999987
Q ss_pred e
Q psy18009 140 R 140 (277)
Q Consensus 140 ~ 140 (277)
.
T Consensus 529 ~ 529 (546)
T COG4615 529 L 529 (546)
T ss_pred c
Confidence 4
No 472
>PRK01156 chromosome segregation protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=127.06 Aligned_cols=76 Identities=28% Similarity=0.388 Sum_probs=66.2
Q ss_pred eeeccCHHHHHHHHH------HHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHH-hc-C--ceEEEEecCcchhccCc
Q psy18009 58 TLALLSGGEKQRVAI------ARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CA-S--RTTIIVAHRLSTIIHAD 127 (277)
Q Consensus 58 ~v~~LSgGqrQrv~I------Aral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l-~~-~--~tiIiIsH~l~ev~~~D 127 (277)
.+..|||||+++++| |++++.+|++++|||||++||+.....+.+++... .. + .++|+|||+.+.+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 59999999999999999999999999999999864 33 2 26888999998775699
Q ss_pred eEEEee
Q psy18009 128 EILVMH 133 (277)
Q Consensus 128 rv~vL~ 133 (277)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 473
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.22 E-value=7.7e-11 Score=104.55 Aligned_cols=87 Identities=24% Similarity=0.402 Sum_probs=63.4
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh-c----ccChHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK-N----FVDMENM 221 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~-~----~~~~~~~ 221 (277)
.+|+||||||||+++|+|+.+|++|+|+++|+++...+... .+++++|+||++.++. .++...-. . -......
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 110 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKER 110 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHH
Confidence 47999999999999999999999999999999887655433 3567999999964443 35532211 0 1223334
Q ss_pred HHHHHHHHHhcCCC
Q psy18009 222 FDLLQETCDVIDIP 235 (277)
Q Consensus 222 ~~~~~~~~~~l~I~ 235 (277)
.+.++++++.+++.
T Consensus 111 ~~~~~~~l~~~~l~ 124 (232)
T cd03218 111 EEKLEELLEEFHIT 124 (232)
T ss_pred HHHHHHHHHHcCCh
Confidence 55678899999875
No 474
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7e-11 Score=107.81 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=61.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccC--CcHHHHhcceEEEcCCch--hhHHhHHH-Hhhc----ccChHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTV--LFNNSIKA-IQKN----FVDMEN 220 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~--~~n~~~~~-~~~~----~~~~~~ 220 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++.. ......+++|+|+||++. ++..++.. +... -.+.++
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 112 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE 112 (271)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHH
Confidence 79999999999999999999999999999998853 223455678999999963 33333321 1111 123444
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.+.++++.+++.
T Consensus 113 ~~~~~~~~l~~~~l~ 127 (271)
T PRK13638 113 ITRRVDEALTLVDAQ 127 (271)
T ss_pred HHHHHHHHHHHcCCH
Confidence 456677888888874
No 475
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=3.5e-11 Score=104.88 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=61.6
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchh-hHHhHHHHhhcccChHHHHHHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL-FNNSIKAIQKNFVDMENMFDLLQE 227 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~-~n~~~~~~~~~~~~~~~~~~~~~~ 227 (277)
.+|+||||||||+++|+|+.+|++|+|+++|+++.. .....++.++|+||++.+ ++.++...-............+.+
T Consensus 32 l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~ 110 (200)
T PRK13540 32 LKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITE 110 (200)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHH
Confidence 379999999999999999999999999999998764 234456789999998644 345554321111001112346788
Q ss_pred HHHhcCCC
Q psy18009 228 TCDVIDIP 235 (277)
Q Consensus 228 ~~~~l~I~ 235 (277)
+++.+++.
T Consensus 111 ~l~~~~l~ 118 (200)
T PRK13540 111 LCRLFSLE 118 (200)
T ss_pred HHHHcCCc
Confidence 89988874
No 476
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7.1e-11 Score=108.15 Aligned_cols=87 Identities=28% Similarity=0.382 Sum_probs=64.9
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC----cHHHHhcceEEEcCCc--hhhHHhHHHHhh----c-ccC
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV----SQASLRQAIGVVPQDT--VLFNNSIKAIQK----N-FVD 217 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~vpqd~--~~~n~~~~~~~~----~-~~~ 217 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++... .....++.|+|+||++ .+++.++...-. . -.+
T Consensus 38 l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~ 117 (280)
T PRK13649 38 FIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVS 117 (280)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCC
Confidence 3799999999999999999999999999999988642 2345667899999996 455555543211 1 134
Q ss_pred hHHHHHHHHHHHHhcCCC
Q psy18009 218 MENMFDLLQETCDVIDIP 235 (277)
Q Consensus 218 ~~~~~~~~~~~~~~l~I~ 235 (277)
.+...+.++++++.+++.
T Consensus 118 ~~~~~~~~~~~l~~~~l~ 135 (280)
T PRK13649 118 QEEAEALAREKLALVGIS 135 (280)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 445566778889998885
No 477
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.22 E-value=2e-11 Score=108.71 Aligned_cols=62 Identities=45% Similarity=0.770 Sum_probs=53.5
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA 210 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~ 210 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+....+++|+|+||++.+++.|+..
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 33 IVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 47999999999999999999999999999999887655555677899999998777777643
No 478
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.22 E-value=1e-10 Score=103.28 Aligned_cols=87 Identities=25% Similarity=0.321 Sum_probs=60.4
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCch--h-hHHhHHHH-hh---cc-cC
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTV--L-FNNSIKAI-QK---NF-VD 217 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~--~-~n~~~~~~-~~---~~-~~ 217 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...+. ...+++++|+||++. + .+.++... .. .+ ..
T Consensus 36 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~ 115 (228)
T cd03257 36 LVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115 (228)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC
Confidence 379999999999999999999999999999998875442 345678999999972 2 23455322 11 11 11
Q ss_pred -hHHH-HHHHHHHHHhcCCC
Q psy18009 218 -MENM-FDLLQETCDVIDIP 235 (277)
Q Consensus 218 -~~~~-~~~~~~~~~~l~I~ 235 (277)
.... ...+.++++.+++.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~ 135 (228)
T cd03257 116 SKKEARKEAVLLLLVGVGLP 135 (228)
T ss_pred cHHHHHHHHHHHHHHHCCCC
Confidence 1122 22235788888874
No 479
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.22 E-value=3.2e-11 Score=106.76 Aligned_cols=61 Identities=36% Similarity=0.661 Sum_probs=52.6
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhHHhHHH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA 210 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n~~~~~ 210 (277)
+|+||||||||+++|+|+.+|.+|+|.++|+++........+++++|+||++.++..++..
T Consensus 46 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 46 VGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred ECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 7999999999999999999999999999999886555555677899999998777766643
No 480
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.22 E-value=7e-11 Score=111.48 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=70.3
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH-----hhcccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI-----QKNFVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~-----~~~~~~~~~~~ 222 (277)
.+|++|||||||+|+|+|+++|++|+|.++|++++..++.. ++||||||+. .+.++||... +..-+.+....
T Consensus 34 llGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~ 111 (338)
T COG3839 34 LLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID 111 (338)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHH
Confidence 48999999999999999999999999999999999877755 6899999995 3444566432 33346777888
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+++..+.|+|.
T Consensus 112 ~rV~eva~~L~l~ 124 (338)
T COG3839 112 KRVKEVAKLLGLE 124 (338)
T ss_pred HHHHHHHHHcCCh
Confidence 8999999999987
No 481
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=104.95 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=61.8
Q ss_pred cCCCCCchhHHHHHHhcccc--C---ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhH-HhHHHH-hh-----cc
Q psy18009 150 VGQSGAGKSTIIRLLFRFYD--V---ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFN-NSIKAI-QK-----NF 215 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~--~---~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n-~~~~~~-~~-----~~ 215 (277)
+|+||||||||+++|+|+.+ | ++|+|+++|+++... ....++++|+|+||++.++. .++... .. +.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 115 (252)
T PRK14256 36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR 115 (252)
T ss_pred ECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC
Confidence 79999999999999999986 3 589999999988642 23456778999999965443 455321 11 11
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.+.....+.+.++++.+++.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~ 135 (252)
T PRK14256 116 VNRSEADEIVESSLKRVALW 135 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCc
Confidence 23344456678888898874
No 482
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.21 E-value=6.5e-11 Score=109.88 Aligned_cols=87 Identities=16% Similarity=0.410 Sum_probs=66.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh----cc-cChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK----NF-VDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~----~~-~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++.. ....++++++|+||++.++ +.++...-. .+ .+.++..
T Consensus 33 l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 111 (301)
T TIGR03522 33 FLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK 111 (301)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 479999999999999999999999999999998865 3345677899999997544 446553311 11 3445556
Q ss_pred HHHHHHHHhcCCCC
Q psy18009 223 DLLQETCDVIDIPQ 236 (277)
Q Consensus 223 ~~~~~~~~~l~I~~ 236 (277)
+.++++++.+++..
T Consensus 112 ~~~~~~l~~~gl~~ 125 (301)
T TIGR03522 112 QRVEEMIELVGLRP 125 (301)
T ss_pred HHHHHHHHHCCCch
Confidence 67899999998863
No 483
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.21 E-value=1.1e-10 Score=103.20 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=66.1
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcH---HHHhcceEEEcCCchhhH-HhHHHHhh------cccCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAIGVVPQDTVLFN-NSIKAIQK------NFVDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~i~~vpqd~~~~n-~~~~~~~~------~~~~~ 218 (277)
..|.||||||||+++|+|+.++++|+|.++|+++...++ ...+++|+|+||++.++. .++...-. .-+..
T Consensus 36 I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~ 115 (220)
T TIGR02982 36 LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSY 115 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCH
Confidence 479999999999999999999999999999998865442 245678999999975544 45542211 11345
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
++..+.+.++++++++.
T Consensus 116 ~~~~~~~~~~l~~~~l~ 132 (220)
T TIGR02982 116 QEARERARAMLEAVGLG 132 (220)
T ss_pred HHHHHHHHHHHHHcCCh
Confidence 55667789999999985
No 484
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.9e-11 Score=107.70 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=62.4
Q ss_pred cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHH-h-----hcc-
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAI-Q-----KNF- 215 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~-~-----~~~- 215 (277)
+|+||||||||+++|+|+.++ ++|+|+++|+++... .....+++|+|+||++.++..++... . .++
T Consensus 51 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~ 130 (267)
T PRK14235 51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLA 130 (267)
T ss_pred ECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccc
Confidence 799999999999999999874 799999999988642 23456678999999975554444321 1 111
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.+.....+.+.++++.+++.
T Consensus 131 ~~~~~~~~~~~~~l~~~~l~ 150 (267)
T PRK14235 131 RSKAELDEIVETSLRKAGLW 150 (267)
T ss_pred cchHHHHHHHHHHHHHcCCc
Confidence 12334456778899998884
No 485
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.7e-11 Score=109.51 Aligned_cols=86 Identities=24% Similarity=0.278 Sum_probs=65.0
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccC------------------------CcHHHHhcceEEEcCCc--hh
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT------------------------VSQASLRQAIGVVPQDT--VL 203 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~------------------------~~~~~~~~~i~~vpqd~--~~ 203 (277)
+|+||||||||+++|+|+.+|++|+|+++|++... .....++++|+||||++ .+
T Consensus 39 iG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l 118 (305)
T PRK13651 39 IGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL 118 (305)
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccc
Confidence 79999999999999999999999999999876531 12345678899999985 56
Q ss_pred hHHhHHHHhh-c----ccChHHHHHHHHHHHHhcCCC
Q psy18009 204 FNNSIKAIQK-N----FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 204 ~n~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~I~ 235 (277)
++.++...-. + -++.....+.+.++++.+++.
T Consensus 119 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 6656643211 1 134556677889999999985
No 486
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.1e-10 Score=110.99 Aligned_cols=85 Identities=28% Similarity=0.407 Sum_probs=66.3
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHH-hhc----ccChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAI-QKN----FVDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~-~~~----~~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|++|+|.++|+++...++ .+++|+||||++.+| +.|+... ..+ -.+.....
T Consensus 37 llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~ 114 (351)
T PRK11432 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERK 114 (351)
T ss_pred EECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHH
Confidence 379999999999999999999999999999999876553 246899999997555 4566432 111 24455567
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.++++++.+++.
T Consensus 115 ~~v~~~l~~~gl~ 127 (351)
T PRK11432 115 QRVKEALELVDLA 127 (351)
T ss_pred HHHHHHHHHcCCc
Confidence 7889999999985
No 487
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=104.33 Aligned_cols=85 Identities=28% Similarity=0.407 Sum_probs=61.8
Q ss_pred cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCC--cHHHHhcceEEEcCCchhhHHhHHHH-h-----hccc
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTV--SQASLRQAIGVVPQDTVLFNNSIKAI-Q-----KNFV 216 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~--~~~~~~~~i~~vpqd~~~~n~~~~~~-~-----~~~~ 216 (277)
+|.||||||||+++|+|+.++ .+|+|+++|+++... .....+++|+|+||++.+++.++... . .++.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~ 118 (254)
T PRK14273 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTK 118 (254)
T ss_pred ECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCC
Confidence 799999999999999999986 489999999987532 23456778999999976555555432 1 1122
Q ss_pred ChHHHHHHHHHHHHhcCC
Q psy18009 217 DMENMFDLLQETCDVIDI 234 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~l~I 234 (277)
+.....+.+.++++.+++
T Consensus 119 ~~~~~~~~~~~~l~~~~l 136 (254)
T PRK14273 119 DKKKLDEIVEQSLKKSAL 136 (254)
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 334456667778888776
No 488
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=103.86 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=64.3
Q ss_pred hcCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHHHhh------cc-
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKAIQK------NF- 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~~~~------~~- 215 (277)
..|+||||||||+++|+|+.++ .+|+|.++|+++...+...++++|+|+||++. +++.|+...-. .+
T Consensus 34 i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 113 (250)
T PRK14247 34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV 113 (250)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc
Confidence 3799999999999999999874 69999999998876565567788999999974 34455543211 11
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.+.+...+.+.++++.+++.
T Consensus 114 ~~~~~~~~~~~~~l~~~~l~ 133 (250)
T PRK14247 114 KSKKELQERVRWALEKAQLW 133 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 23344456678889998873
No 489
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.5e-10 Score=103.54 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=63.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCC------cHHHHhcceEEEcCCchhh-HHhHHHHhh----cc--
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV------SQASLRQAIGVVPQDTVLF-NNSIKAIQK----NF-- 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~------~~~~~~~~i~~vpqd~~~~-n~~~~~~~~----~~-- 215 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++... .....+++|+|+||++.++ ..++...-. .+
T Consensus 33 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~ 112 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG 112 (242)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999999987421 1234567899999997554 345543211 11
Q ss_pred cChHHHHHHHHHHHHhcCCC
Q psy18009 216 VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~I~ 235 (277)
.......+.+.++++.+++.
T Consensus 113 ~~~~~~~~~~~~~l~~~gl~ 132 (242)
T PRK11124 113 LSKDQALARAEKLLERLRLK 132 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCh
Confidence 22334456788899999885
No 490
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.19 E-value=1.4e-10 Score=110.65 Aligned_cols=85 Identities=16% Similarity=0.378 Sum_probs=65.6
Q ss_pred hcCCCCCchhHHHHHHhccccCce--eEEEECCEeccCCcHHHHhcceEEEcCCchhh-HHhHHHHhh-----cccChHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVES--GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF-NNSIKAIQK-----NFVDMEN 220 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~--G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~-n~~~~~~~~-----~~~~~~~ 220 (277)
.+|+||||||||+++|+|+.+|++ |+|.++|+++...++ .+++|+||||++.+| +.|+...-. .-.+...
T Consensus 36 llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~ 113 (362)
T TIGR03258 36 LIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD 113 (362)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHH
Confidence 379999999999999999999999 999999999865444 356899999997544 446543211 1134555
Q ss_pred HHHHHHHHHHhcCCC
Q psy18009 221 MFDLLQETCDVIDIP 235 (277)
Q Consensus 221 ~~~~~~~~~~~l~I~ 235 (277)
..+.++++++.+++.
T Consensus 114 ~~~~v~~~l~~~gL~ 128 (362)
T TIGR03258 114 IAERVADALKLVGLG 128 (362)
T ss_pred HHHHHHHHHHhcCCC
Confidence 667889999999985
No 491
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.19 E-value=1.6e-10 Score=104.16 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=63.4
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCc-------------HHHHhcceEEEcCCchhh-HHhHHHHhh-
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-------------QASLRQAIGVVPQDTVLF-NNSIKAIQK- 213 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~-------------~~~~~~~i~~vpqd~~~~-n~~~~~~~~- 213 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+ ....+++++|+||++.++ +.++...-.
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~ 110 (252)
T TIGR03005 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE 110 (252)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH
Confidence 47999999999999999999999999999999885432 124567899999996443 345532211
Q ss_pred c-----ccChHHHHHHHHHHHHhcCCC
Q psy18009 214 N-----FVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 214 ~-----~~~~~~~~~~~~~~~~~l~I~ 235 (277)
. -++.....+.+.++++.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~gl~ 137 (252)
T TIGR03005 111 APVLVLGMARAEAEKRAMELLDMVGLA 137 (252)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence 0 123444556778899999885
No 492
>KOG0063|consensus
Probab=99.19 E-value=6.7e-11 Score=113.63 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=76.7
Q ss_pred HhhcccCcccccCCeeeccCHHHHHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc-CceEEEEecCcch
Q psy18009 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRLST 122 (277)
Q Consensus 44 ~vL~~l~l~i~~~~~v~~LSgGqrQrv~IAral~~~p~ilILDEPTa~LD~~~~~~l~~~l~~l~~-~~tiIiIsH~l~e 122 (277)
.+.+.+.|+--.++-+..||||+-||.+||.+.+.++++++||||.+.||...+-..-..|+.+.. ..=+|+|.|+++-
T Consensus 196 ~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 196 EVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred HHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence 345555555556666778999999999999999999999999999999999999999999999865 4678889999998
Q ss_pred hcc-CceEEEee
Q psy18009 123 IIH-ADEILVMH 133 (277)
Q Consensus 123 v~~-~Drv~vL~ 133 (277)
+-. +|-+-+|-
T Consensus 276 LDylSDFiCcLY 287 (592)
T KOG0063|consen 276 LDYLSDFICCLY 287 (592)
T ss_pred HHhhhcceeEEe
Confidence 875 88887774
No 493
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.19 E-value=1.5e-10 Score=104.73 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=60.7
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEe-----ccCCcHHH----HhcceEEEcCCch---hhHHhHH-HH-----
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN-----IKTVSQAS----LRQAIGVVPQDTV---LFNNSIK-AI----- 211 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~-----~~~~~~~~----~~~~i~~vpqd~~---~~n~~~~-~~----- 211 (277)
.|+||||||||+++|+|+.+|++|+|.++|++ +...+... .+++++|+||++. ..+.++. .+
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 117 (258)
T PRK11701 38 VGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLM 117 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHH
Confidence 79999999999999999999999999999998 65444322 3567999999962 2222221 11
Q ss_pred hhcccChHHHHHHHHHHHHhcCCC
Q psy18009 212 QKNFVDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~I~ 235 (277)
.....+.+...+.+.++++.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 118 AVGARHYGDIRATAGDWLERVEID 141 (258)
T ss_pred HhccCcHHHHHHHHHHHHHHcCCC
Confidence 111123334456778999999985
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.1e-10 Score=102.99 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=61.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCchhhH-HhHHHHhh-c--c--cChHHHH
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN-NSIKAIQK-N--F--VDMENMF 222 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~~~n-~~~~~~~~-~--~--~~~~~~~ 222 (277)
.+|+||||||||+++|+|+.+|.+|+|.++|+++.. .++.++|+||++.++. .++...-. . + .+.+...
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 109 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR 109 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHH
Confidence 479999999999999999999999999999998752 2467999999965443 45532211 1 1 2334456
Q ss_pred HHHHHHHHhcCCC
Q psy18009 223 DLLQETCDVIDIP 235 (277)
Q Consensus 223 ~~~~~~~~~l~I~ 235 (277)
+.+.++++++++.
T Consensus 110 ~~~~~~l~~~~l~ 122 (220)
T cd03293 110 ERAEELLELVGLS 122 (220)
T ss_pred HHHHHHHHHcCCh
Confidence 6788999999885
No 495
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.1e-10 Score=106.16 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=63.2
Q ss_pred cCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCch-hhHHhHHHH-hhc------cc--ChH
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV-LFNNSIKAI-QKN------FV--DME 219 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~~-~~n~~~~~~-~~~------~~--~~~ 219 (277)
+|+||||||||+++|+|+.+|++|+|.++|+++...+...++++|+|+||++. ++..++... ... +. ...
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 122 (265)
T PRK10575 43 IGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA 122 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCH
Confidence 79999999999999999999999999999998866555566778999999853 333455322 111 11 122
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18009 220 NMFDLLQETCDVIDIP 235 (277)
Q Consensus 220 ~~~~~~~~~~~~l~I~ 235 (277)
...+.+.++++.+++.
T Consensus 123 ~~~~~~~~~l~~~~l~ 138 (265)
T PRK10575 123 ADREKVEEAISLVGLK 138 (265)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 3455678888998884
No 496
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.8e-10 Score=104.39 Aligned_cols=85 Identities=31% Similarity=0.419 Sum_probs=62.6
Q ss_pred cCCCCCchhHHHHHHhcccc-----CceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHhh-c-----cc
Q psy18009 150 VGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQK-N-----FV 216 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~~-~-----~~ 216 (277)
+|+||||||||+++|+|+.+ |++|+|.++|+++.. .....++++|+|+||++.++..++...-. . ..
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~ 124 (260)
T PRK10744 45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 124 (260)
T ss_pred ECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCC
Confidence 79999999999999999986 478999999998853 23445677899999997665555543211 1 13
Q ss_pred ChHHHHHHHHHHHHhcCC
Q psy18009 217 DMENMFDLLQETCDVIDI 234 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~l~I 234 (277)
+.....+.+.++++.+++
T Consensus 125 ~~~~~~~~~~~~l~~~~l 142 (260)
T PRK10744 125 SRAEMDERVEWALTKAAL 142 (260)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 344445677888888876
No 497
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.7e-10 Score=105.37 Aligned_cols=85 Identities=28% Similarity=0.424 Sum_probs=60.4
Q ss_pred cCCCCCchhHHHHHHhcccc-----CceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHhh-c--ccC-h
Q psy18009 150 VGQSGAGKSTIIRLLFRFYD-----VESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQK-N--FVD-M 218 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~~-~--~~~-~ 218 (277)
+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..+...+++|+|+||++.++..|+...-. . +-. .
T Consensus 45 ~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~ 124 (269)
T PRK14259 45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYT 124 (269)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCc
Confidence 79999999999999999987 589999999998753 23455677899999998666555543211 1 000 1
Q ss_pred HHHHHHHHHHHHhcCC
Q psy18009 219 ENMFDLLQETCDVIDI 234 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I 234 (277)
....+.+.++++.+++
T Consensus 125 ~~~~~~~~~~l~~~~l 140 (269)
T PRK14259 125 GDMDELVERSLRKAAV 140 (269)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 2334556777887765
No 498
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.18 E-value=1.3e-10 Score=103.87 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=63.7
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHH-HhcceEEEcCCchhhH-HhHHHHhh-c------c----
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLFN-NSIKAIQK-N------F---- 215 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~i~~vpqd~~~~n-~~~~~~~~-~------~---- 215 (277)
..|+||||||||+++|+|+.+|++|+|.++|+++...+... .+++++|+||++.++. .++...-. . +
T Consensus 33 l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~ 112 (242)
T TIGR03411 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASL 112 (242)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccccccc
Confidence 37999999999999999999999999999999886655433 4567999999964443 35542111 0 0
Q ss_pred --cChHHHHHHHHHHHHhcCCC
Q psy18009 216 --VDMENMFDLLQETCDVIDIP 235 (277)
Q Consensus 216 --~~~~~~~~~~~~~~~~l~I~ 235 (277)
...+...+.++++++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~ 134 (242)
T TIGR03411 113 FFRLSAEEKDRIEEVLETIGLA 134 (242)
T ss_pred ccccHHHHHHHHHHHHHHcCCc
Confidence 12234556788999999885
No 499
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.18 E-value=1e-10 Score=105.74 Aligned_cols=87 Identities=17% Similarity=0.323 Sum_probs=64.2
Q ss_pred hcCCCCCchhHHHHHHhccccCceeEEEECCEeccCCcHHHHhcceEEEcCCc-hhhHHhHHHH-hhc------c--cCh
Q psy18009 149 QVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT-VLFNNSIKAI-QKN------F--VDM 218 (277)
Q Consensus 149 ~~G~~GsGkttL~~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~vpqd~-~~~n~~~~~~-~~~------~--~~~ 218 (277)
.+|+||||||||+++|+|+.++++|+|.++|+++...+...++++++|+||++ ..+..++... ... + ...
T Consensus 32 i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 111 (256)
T TIGR03873 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDS 111 (256)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCC
Confidence 37999999999999999999999999999999987666666667899999996 2333444322 111 1 122
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy18009 219 ENMFDLLQETCDVIDIP 235 (277)
Q Consensus 219 ~~~~~~~~~~~~~l~I~ 235 (277)
.+..+.+.++++.+++.
T Consensus 112 ~~~~~~~~~~l~~~~l~ 128 (256)
T TIGR03873 112 PHDAAVVDRALARTELS 128 (256)
T ss_pred HHHHHHHHHHHHHcCcH
Confidence 33445678899998884
No 500
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.3e-10 Score=102.87 Aligned_cols=85 Identities=28% Similarity=0.462 Sum_probs=60.4
Q ss_pred cCCCCCchhHHHHHHhccccC-----ceeEEEECCEeccC--CcHHHHhcceEEEcCCchhhHHhHHHHh------hccc
Q psy18009 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLFNNSIKAIQ------KNFV 216 (277)
Q Consensus 150 ~G~~GsGkttL~~~l~Gl~~~-----~~G~i~~~g~~~~~--~~~~~~~~~i~~vpqd~~~~n~~~~~~~------~~~~ 216 (277)
+|+||||||||+++|+|+.++ .+|+|.++|+++.. ......+++|+|+||++.+++.++...- .++.
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~ 114 (250)
T PRK14240 35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIK 114 (250)
T ss_pred ECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC
Confidence 799999999999999998763 58999999998864 2334567789999999765555543211 1122
Q ss_pred ChHHHHHHHHHHHHhcCC
Q psy18009 217 DMENMFDLLQETCDVIDI 234 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~l~I 234 (277)
+.+...+.+.++++.+++
T Consensus 115 ~~~~~~~~~~~~l~~~~l 132 (250)
T PRK14240 115 DKKKLDEIVEKSLKGAAL 132 (250)
T ss_pred CHHHHHHHHHHHHHHcCC
Confidence 233345667777888775
Done!