RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18009
(277 letters)
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 152 bits (387), Expect = 1e-45
Identities = 57/81 (70%), Positives = 68/81 (83%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGEKQRVAIAR +LK P I+LLDEATSALDT TER IQ+AL V RTTI++AHRLS
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLS 197
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI++AD+I+V+ G IVERG+
Sbjct: 198 TIVNADKIIVLKDGRIVERGT 218
Score = 116 bits (292), Expect = 2e-31
Identities = 43/59 (72%), Positives = 51/59 (86%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG+GKSTI+RLLFRFYDV SG I ID Q+I+ V+ SLR+AIGVVPQDTVLFN++I
Sbjct: 33 VGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTI 91
Score = 60.3 bits (147), Expect = 8e-11
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
+EF NV+F+Y P R +LK++SFT+PAGK +A++ SG K I R L +
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKS--TILRLLFR 49
Score = 57.6 bits (140), Expect = 7e-10
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+EF NV+F+Y P R +LK++SFT+PAGK +A
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVA 31
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 138 bits (351), Expect = 8e-41
Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 64/171 (37%)
Query: 30 VEFRNVSFSYTP-ERAILKNISFTVP------------AGK-TLA--------------- 60
+EF+NVSFSY + +LK++S T+ +GK TL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 61 -----------------------------------LLSGGEKQRVAIARTLLKAPQIVLL 85
+LSGG++QR+AIAR LL+ P I++L
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILIL 120
Query: 86 DEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGE 136
DEATSALD +TE I AL + +T I++AHRLSTI AD I+V+ G
Sbjct: 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
Score = 96.3 bits (241), Expect = 2e-24
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKST+++LL R YD SG+I ID +++ + SLR+ I VPQD LF+ +I+
Sbjct: 34 VGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIR 93
Score = 46.6 bits (112), Expect = 2e-06
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
+EF+NVSFSY + +LK++S T+ G+ +A
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVA 32
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 138 bits (350), Expect = 6e-40
Identities = 49/81 (60%), Positives = 67/81 (82%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR+AIAR LL+ P+I+LLDEATSALD ++E+ +Q AL+R RTTI++AHRLS
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLS 199
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI +AD I V+ G++VE+G+
Sbjct: 200 TIRNADLIAVLQNGQVVEQGT 220
Score = 88.8 bits (221), Expect = 4e-21
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKST++ LL RFYD SG+I +D +I+ ++ LR IG+V Q+ VLF+ +I
Sbjct: 35 VGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94
Score = 50.6 bits (122), Expect = 1e-07
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 30 VEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
+EF+NVSF Y P+ ILK +S T+P GKT+AL+ SG K V
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV 46
Score = 48.3 bits (116), Expect = 9e-07
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 247 VEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+EF+NVSF Y P+ ILK +S T+P GKT+A
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVA 33
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 137 bits (347), Expect = 1e-39
Identities = 51/81 (62%), Positives = 69/81 (85%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+AIAR LLK P I++LDEATSALDT++ER +Q+AL R+ +RTT ++AHRLS
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLS 198
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI +AD I+V+ G+IVERG+
Sbjct: 199 TIENADRIVVLEDGKIVERGT 219
Score = 88.4 bits (220), Expect = 6e-21
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ G V+L VG SG+GKST++ L+ RFYDV+SG I ID +++ + ASLR+ IG+V
Sbjct: 25 IPAGE-TVAL--VGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81
Query: 198 PQDTVLFNNSIK 209
QD LFN+++
Sbjct: 82 SQDVFLFNDTVA 93
Score = 49.9 bits (120), Expect = 3e-07
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 30 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEK 67
VEF+NV+F Y +L++IS +PAG+T+AL+ SG K
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGK 41
Score = 46.1 bits (110), Expect = 6e-06
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
VEF+NV+F Y +L++IS +PAG+T+A
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVA 32
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 141 bits (358), Expect = 6e-39
Identities = 61/90 (67%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGEKQRVAIART+LK P I++LDEATSALDT TE+ IQ+AL V A RTT+++AHRLS
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
TII ADEI+V+ G IVERG+ LL G
Sbjct: 460 TIIDADEIIVLDNGRIVERGT-HEELLAAG 488
Score = 99.7 bits (249), Expect = 1e-23
Identities = 44/59 (74%), Positives = 53/59 (89%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SGAGKSTI+RLLFRFYDV SG I ID Q+I+ V+Q SLR+AIG+VPQDTVLFN++I
Sbjct: 295 VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353
Score = 75.1 bits (185), Expect = 2e-15
Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 146 SLLQVGQSGA-GKSTIIRLLFRFYDVESGDIFI-DNQNIKT-VSQASLRQAIGVVPQDTV 202
+L GQ+ + + VE G + + D N+ + Q S +P + +
Sbjct: 167 LVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLS-------IPLNFL 219
Query: 203 LFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPML-CVAQGAVEFRNVSFSYTPERA 261
F+ I++ DME MFDLL +V D P AP L V GAV F NVSF+Y P R
Sbjct: 220 GFSYR--EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 262 ILKNISFTVPAGKTLA 277
IL ISFT+P GKT+A
Sbjct: 278 ILNGISFTIPLGKTVA 293
Score = 68.2 bits (167), Expect = 5e-13
Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 1 MENMFDLLQETCDVIDIPQAPML-CVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTL 59
ME MFDLL +V D P AP L V GAV F NVSF+Y P R IL ISFT+P GKT+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 60 ALL--SGGEK 67
A++ SG K
Sbjct: 293 AIVGESGAGK 302
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 121 bits (306), Expect = 1e-33
Identities = 46/82 (56%), Positives = 66/82 (80%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LS GE+Q +AIAR +L+ P+I++LDEATS +DT+TE+ IQ AL ++ RT+II+AHRL
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRL 198
Query: 121 STIIHADEILVMHAGEIVERGS 142
STI +AD+ILV+ G+I+E G+
Sbjct: 199 STIKNADKILVLDDGKIIEEGT 220
Score = 94.2 bits (235), Expect = 4e-23
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +GAGK+T+I LL RFYD + G I ID +I+ +S+ SLR IGVV QDT LF+ +I
Sbjct: 35 VGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94
Score = 50.7 bits (122), Expect = 1e-07
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
G +EF NV+FSY ++ +LK+I+F++ G+T+A+
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAI 34
Score = 49.9 bits (120), Expect = 3e-07
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 245 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
G +EF NV+FSY ++ +LK+I+F++ G+T+A
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVA 33
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 126 bits (318), Expect = 5e-33
Identities = 53/89 (59%), Positives = 69/89 (77%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
P G+ LLSGG++QR+AIAR LLK I++LDEATSALD ++ER +Q+AL R+ RTT
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTT 521
Query: 114 IIVAHRLSTIIHADEILVMHAGEIVERGS 142
+++AHRLSTI AD I+VM G IVERG+
Sbjct: 522 LVIAHRLSTIEKADRIVVMDDGRIVERGT 550
Score = 67.0 bits (164), Expect = 1e-12
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKST++ L+ RFY+ +SG I +D ++ + ASLR+ + +V QD VLFN++I
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423
Query: 210 A 210
Sbjct: 424 N 424
Score = 47.0 bits (112), Expect = 6e-06
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 1 MENMFDLLQETCDVIDIPQAP-----MLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVP 54
M+ + ++D P + A+G VEFRNV+F Y +R L +IS +
Sbjct: 297 MQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIE 356
Query: 55 AGKTLALL--SGGEKQRVA 71
G+T+AL+ SG K +
Sbjct: 357 PGETVALVGRSGSGKSTLV 375
Score = 43.9 bits (104), Expect = 5e-05
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 218 MENMFDLLQETCDVIDIPQAP-----MLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVP 271
M+ + ++D P + A+G VEFRNV+F Y +R L +IS +
Sbjct: 297 MQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIE 356
Query: 272 AGKTLA 277
G+T+A
Sbjct: 357 PGETVA 362
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 125 bits (315), Expect = 2e-32
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 1/90 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGE+QR+AIAR LLK P I++LDEATSALD +TE +++AL+ + RTT I+AHRLS
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
T+ +AD ILV G +VE GS F L+ G
Sbjct: 532 TVRNADRILVFDNGRVVESGS-FDELVARG 560
Score = 80.0 bits (198), Expect = 7e-17
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG +GAGKST+I LL R +D +SG I ID +I+TV++ASLR+ I VV QD LFN SI
Sbjct: 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Score = 56.5 bits (137), Expect = 4e-09
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
+E F++ DV D P A L +GAVEF +VSFSY R ++++SF G+T+A
Sbjct: 306 LEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVA 365
Query: 61 L 61
+
Sbjct: 366 I 366
Score = 55.0 bits (133), Expect = 1e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 218 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E F++ DV D P A L +GAVEF +VSFSY R ++++SF G+T+A
Sbjct: 306 LEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVA 365
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 122 bits (309), Expect = 1e-31
Identities = 53/87 (60%), Positives = 72/87 (82%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
G+ LLSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+ + +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
+AHRLSTI ADEILV+ GEIVERG+
Sbjct: 535 IAHRLSTIEKADEILVVEDGEIVERGT 561
Score = 73.1 bits (180), Expect = 1e-14
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKSTI LL RFYD++ G+I +D +++ + ASLR + +V Q+ LFN++I
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433
Score = 54.3 bits (131), Expect = 2e-08
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 26 AQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
A+G +EFRNV+F+Y E L+NI+F +PAGKT+AL+ SG K +A
Sbjct: 338 AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386
Score = 50.8 bits (122), Expect = 3e-07
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 243 AQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLA 277
A+G +EFRNV+F+Y E L+NI+F +PAGKT+A
Sbjct: 338 AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVA 373
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 116 bits (292), Expect = 1e-31
Identities = 46/81 (56%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++ +CA RT II+AHRLS
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 122 TIIHADEILVMHAGEIVERGS 142
T+ +AD I+VM G IVE+GS
Sbjct: 199 TVKNADRIIVMEKGRIVEQGS 219
Score = 68.7 bits (168), Expect = 9e-14
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKST+ +L+ RFY E+G + +D ++ A LR+ +GVV Q+ VLFN SI+
Sbjct: 34 VGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93
Score = 32.1 bits (73), Expect = 0.26
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 30 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
+ F +V F Y P IL NIS + G+ + ++ SG K +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLT 45
Score = 31.3 bits (71), Expect = 0.45
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
+ F +V F Y P IL NIS + G+ +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVG 32
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 119 bits (301), Expect = 1e-30
Identities = 51/81 (62%), Positives = 66/81 (81%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+AIAR LL+ P I++LDEATSALDT+TE IQ AL ++ RTT+I+AHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI +AD I+V+ G IVERG+
Sbjct: 526 TIKNADRIIVLDNGRIVERGT 546
Score = 89.0 bits (221), Expect = 6e-20
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 9/80 (11%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
+ GE V VG SG+GKST+I+LL R YD SG+I ID +I+ +S S
Sbjct: 350 FSIEPGEKVAI---------VGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400
Query: 190 LRQAIGVVPQDTVLFNNSIK 209
LR+ IG+V QD +LF+ +I+
Sbjct: 401 LRKRIGIVSQDPLLFSGTIR 420
Score = 60.9 bits (148), Expect = 2e-10
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
+ +Q+ E +F+LL E +V D P G++EF NVSFSY ++ +L
Sbjct: 288 LGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPGKKPVL 345
Query: 264 KNISFTVPAGKTLA 277
K+ISF++ G+ +A
Sbjct: 346 KDISFSIEPGEKVA 359
Score = 57.1 bits (138), Expect = 3e-09
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
E +F+LL E +V D P G++EF NVSFSY ++ +LK+ISF++ G+ +A
Sbjct: 302 AERLFELLDEEPEVEDPPDPL--KDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVA 359
Query: 61 LLSGGEKQRVAIARTLLK 78
++ + + + LL+
Sbjct: 360 IVGPSGSGKSTLIKLLLR 377
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 119 bits (300), Expect = 3e-30
Identities = 49/83 (59%), Positives = 63/83 (75%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LSGG++QR+A+AR LL P+I+LLDEATSALD +TE I L ++ RT II+AHR
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR 667
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LSTI AD I+V+ G+IVE+GS
Sbjct: 668 LSTIRSADRIIVLDQGKIVEQGS 690
Score = 83.0 bits (206), Expect = 5e-18
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKST+++LL Y + G I +D ++ + ASLR+ +G V QD LF+ SI+
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 210 ---AIQKNFVDMENMFDLLQETCDVIDIPQAPM 239
A+ E + + Q I PM
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPM 597
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 27 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
QG +EF NVSF Y P+ +L+++S +P G+ +A++ SG K TLLK
Sbjct: 469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS------TLLK 517
Score = 40.7 bits (96), Expect = 6e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 210 AIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISF 268
Q+ V +E + D+L + L QG +EF NVSF Y P+ +L+++S
Sbjct: 435 DFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSL 494
Query: 269 TVPAGKTLA 277
+P G+ +A
Sbjct: 495 EIPPGEKVA 503
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 115 bits (291), Expect = 3e-29
Identities = 45/81 (55%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+AIAR +LK I+LLDEATSALD ++E+ +Q AL + RTT+I+AHRL+
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLA 536
Query: 122 TIIHADEILVMHAGEIVERGS 142
T++ AD I+VM G IV +G+
Sbjct: 537 TVLKADRIVVMDQGRIVAQGT 557
Score = 71.3 bits (175), Expect = 5e-14
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SGAGKST+ +LL RFYD +SG I +D +++ + A LR + +VPQD VLF S+
Sbjct: 372 VGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430
Score = 45.1 bits (107), Expect = 3e-05
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSY--TPERAILKNISFTVPAGK 57
E + +LLQ D+ L V +G +EF V+F+Y P++ L ++ TV G+
Sbjct: 308 AERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367
Query: 58 TLALL--SGGEK 67
T+AL+ SG K
Sbjct: 368 TVALVGPSGAGK 379
Score = 42.8 bits (101), Expect = 1e-04
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 218 MENMFDLLQETCDVIDIPQAPMLCV-AQGAVEFRNVSFSY--TPERAILKNISFTVPAGK 274
E + +LLQ D+ L V +G +EF V+F+Y P++ L ++ TV G+
Sbjct: 308 AERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367
Query: 275 TLA 277
T+A
Sbjct: 368 TVA 370
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 106 bits (267), Expect = 7e-28
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G++Q + +AR LL+ +I++LDEAT+++D +T+ IQ + T + +AHRL
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLD 199
Query: 122 TIIHADEILVMHAGEIVERGS 142
TII +D ILV+ G +VE S
Sbjct: 200 TIIDSDRILVLDKGRVVEFDS 220
Score = 74.5 bits (184), Expect = 5e-16
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG++G+GKS+++ LFR ++ SG I ID +I + LR I ++PQD VLF+ +I
Sbjct: 36 VGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTI 94
Score = 38.6 bits (91), Expect = 0.001
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 28 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL 61
G +EF+NVS Y P +LKNISF++ G+ + +
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGI 35
Score = 38.6 bits (91), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 245 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 277
G +EF+NVS Y P +LKNISF++ G+ +
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVG 34
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 112 bits (281), Expect = 8e-28
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 51 FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I + +C
Sbjct: 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642
Query: 111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
RT II+AHRLST+ D I+V+ G+I E G
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674
Score = 62.8 bits (153), Expect = 3e-11
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKST+ +LL R Y + G + +D ++ A LR+ +GVV Q+ VLF+ SI+
Sbjct: 489 VGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548
Score = 40.1 bits (94), Expect = 8e-04
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 13 DVIDIPQAP------MLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTLALL--S 63
D+++ P P L +GA+ F N+ F Y P+ +L N++ + G+ + ++ S
Sbjct: 433 DILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPS 492
Query: 64 GGEKQRVAIARTLLKAPQI--VLLDE 87
G K + L PQ VL+D
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDG 518
Score = 38.2 bits (89), Expect = 0.004
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 230 DVIDIPQAP------MLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTL 276
D+++ P P L +GA+ F N+ F Y P+ +L N++ + G+ +
Sbjct: 433 DILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFI 486
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 107 bits (270), Expect = 2e-26
Identities = 46/82 (56%), Positives = 61/82 (74%), Gaps = 4/82 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHRL 120
LSGG++QR+ IAR L++ P I++LDEATSALD +TE+ I L R C T IIVAHRL
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGC---TCIIVAHRL 672
Query: 121 STIIHADEILVMHAGEIVERGS 142
STI DEI+V+ G++V+RG+
Sbjct: 673 STIRDCDEIIVLERGKVVQRGT 694
Score = 52.6 bits (127), Expect = 9e-08
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKSTI +L+ Y SG+I D + + + L ++ +V QD LF +++
Sbjct: 511 VGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570
Score = 39.2 bits (92), Expect = 0.002
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 27 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
G VE RN++F Y+P E +++N S T+ G+ +AL+ SG K +A
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522
Score = 35.3 bits (82), Expect = 0.029
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 244 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
G VE RN++F Y+P E +++N S T+ G+ +A
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVA 509
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 107 bits (270), Expect = 2e-26
Identities = 42/90 (46%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L++ P+I+L DEATSALD +T+ + +L R+ +R I++AHRLS
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLS 646
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
TI +AD I V+ AG +V++G+ + L+
Sbjct: 647 TIRNADRIYVLDAGRVVQQGT-YDELMARE 675
Score = 58.0 bits (141), Expect = 1e-09
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
FV++ VG SG+GKST++RLL F ESG +F D Q++ + ++R+ +GVV Q+ L
Sbjct: 481 FVAI--VGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538
Query: 204 FNNSI 208
+ SI
Sbjct: 539 MSGSI 543
Score = 33.0 bits (76), Expect = 0.16
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 27 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLAL 61
GA+E V+F Y P+ IL ++S + G+ +A+
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAI 484
Score = 32.2 bits (74), Expect = 0.30
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 244 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 277
GA+E V+F Y P+ IL ++S + G+ +A
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVA 483
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 105 bits (263), Expect = 1e-25
Identities = 43/81 (53%), Positives = 62/81 (76%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G+KQ +A+AR L++ PQI++LDEAT+ +D+ TE+ IQ AL V T +++AHRLS
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI+ AD ILV+H G+ VE+G+
Sbjct: 537 TIVEADTILVLHRGQAVEQGT 557
Score = 57.4 bits (139), Expect = 2e-09
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
FV+L VG +G+GKST+ LL +Y + G+I +D + + ++S + LRQ + +V QD V+
Sbjct: 369 FVAL--VGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 204 FNNSIKA 210
++ A
Sbjct: 427 LADTFLA 433
Score = 38.5 bits (90), Expect = 0.003
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 25 VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
+ G ++ NVSF+Y + +L+NI+ +VP+ +AL
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVAL 372
Score = 37.8 bits (88), Expect = 0.005
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 211 IQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTV 270
+Q+ V E +F+L+ P+ G ++ NVSF+Y + +L+NI+ +V
Sbjct: 308 LQQAVVAGERVFELMDGPRQQYGNDDRPL---QSGRIDIDNVSFAYRDDNLVLQNINLSV 364
Query: 271 PA 272
P+
Sbjct: 365 PS 366
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 99.9 bits (249), Expect = 2e-25
Identities = 44/83 (53%), Positives = 62/83 (74%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
G+ + LSGG+KQRVAIAR L++ PQ+++LDEATSALD ++E+ +Q AL RT +
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203
Query: 115 IVAHRLSTIIHADEILVMHAGEI 137
++AHRLST+ AD+ILV+ G I
Sbjct: 204 VIAHRLSTVERADQILVLDGGRI 226
Score = 50.5 bits (121), Expect = 2e-07
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKST++ LL FY + G + +D + I L + +V Q+ VLF S++
Sbjct: 46 VGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105
Score = 45.2 bits (107), Expect = 1e-05
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQ- 81
+G V+F+NV+F+Y P+ +L+++SFT+ G+ AL+ SG K V PQ
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 82 -IVLLDE 87
VLLD
Sbjct: 69 GQVLLDG 75
Score = 39.8 bits (93), Expect = 7e-04
Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F+NV+F+Y P+ +L+++SFT+ G+ A
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTA 44
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 101 bits (253), Expect = 4e-24
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LS G+ QR+A+AR LL+ Q++LLDE T++LD +E+ + ALN +TT++V H+
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
L + D+I VM G+IV++G
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGD 566
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SGAGK++++ L F + G + I+ ++ + S R+ + V Q+ L + +++
Sbjct: 382 VGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 93.5 bits (233), Expect = 1e-23
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 25 VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
G + + P + + I + VP LSGG++QRVA+AR LL P ++L
Sbjct: 51 PTSGEILIDGKDIAKLPLEELRRRIGY-VPQ------LSGGQRQRVALARALLLNPDLLL 103
Query: 85 LDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIHA-DEILVMHAGE 136
LDE TS LD + + L + RT IIV H A D ++V+ G+
Sbjct: 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
Score = 59.2 bits (144), Expect = 6e-11
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
VG +G+GKST++R + SG+I ID ++I + LR+ IG VPQ
Sbjct: 31 VGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
Score = 32.2 bits (74), Expect = 0.13
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 248 EFRNVSFSYTPERAILKNISFTVPAGKTLA 277
E N+SF Y R L N+S T+ AG+ +A
Sbjct: 1 EIENLSFRY-GGRTALDNVSLTLKAGEIVA 29
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 99.0 bits (247), Expect = 2e-23
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
+LSGG+KQR++IAR LL +I++LD+A SA+D +TE I L + RT II AHRL
Sbjct: 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL 510
Query: 121 STIIHADEILVMHAGEIVERG 141
S + A EILVM G I +RG
Sbjct: 511 SALTEASEILVMQHGHIAQRG 531
Score = 47.8 bits (114), Expect = 3e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
G +G+GKST++ L+ R +DV GDI + + + S R + VV Q LF++++
Sbjct: 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 97.7 bits (244), Expect = 5e-23
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LSGG+ QR+A+AR LL ++LLDE T+ LD +TE+ I AL + +T +++ HR
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
L AD I+V+ G +VE+G+
Sbjct: 515 LEDAADADRIVVLDNGRLVEQGT 537
Score = 62.7 bits (153), Expect = 4e-11
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SGAGKST++ LL F G+I ++ +++ +S + R+ I V Q+ LF +I+
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412
Score = 29.9 bits (68), Expect = 1.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 26 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+ N+SF Y + L +++ T+ AG+ AL+
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALV 353
Score = 28.0 bits (63), Expect = 6.7
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 243 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+ N+SF Y + L +++ T+ AG+ A
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTA 351
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 97.3 bits (242), Expect = 9e-23
Identities = 46/90 (51%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGE+QR+AIAR +LK I++LDEATSALD +TE +++A++ + +RTT I+AHRLS
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLS 531
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVG 151
T+ +AD +L + G ++E+GS F L+Q
Sbjct: 532 TVRNADLVLFLDQGRLIEKGS-FQELIQKD 560
Score = 64.9 bits (158), Expect = 6e-12
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +GAGK+T+I LL R YD G I ID +I TV++ SLR++I V QD LFN SI+
Sbjct: 367 VGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426
Score = 42.6 bits (100), Expect = 1e-04
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
+E+ FDL + AP L +GAVEFR+++F + + ++SF AG+T+A
Sbjct: 306 LEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVA 365
Query: 61 LL 62
++
Sbjct: 366 IV 367
Score = 42.2 bits (99), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 218 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E+ FDL + AP L +GAVEFR+++F + + ++SF AG+T+A
Sbjct: 306 LEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVA 365
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 95.9 bits (239), Expect = 3e-22
Identities = 45/86 (52%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
G+ + LSGG+KQR+AIAR L++ P++++LDEATSALD + E+ +Q + +R ASRT ++
Sbjct: 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLL 669
Query: 116 VAHRLSTIIHADEILVMHAGEIVERG 141
+AHRLST+ AD+ILV+ G +VE G
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMG 695
Score = 57.4 bits (139), Expect = 2e-09
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKST+ LL Y G + +D + L + + +V Q+ VLF+ S++
Sbjct: 513 VGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572
Query: 210 ---AIQKNFVDMENMFDLLQETC 229
A E + +
Sbjct: 573 ENIAYGLTDTPDEEIMAAAKAAN 595
Score = 50.1 bits (120), Expect = 6e-07
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
+G +EF++VSFSY P+ +LK ++FT+ G+ +AL+ SG K VA
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Score = 44.7 bits (106), Expect = 3e-05
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G +EF++VSFSY P+ +LK ++FT+ G+ +A
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 91.5 bits (228), Expect = 3e-22
Identities = 37/80 (46%), Positives = 52/80 (65%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++Q VA+AR LL P I+LLDE TSA+D +E ++ L ++ +T II+ HR S
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS 200
Query: 122 TIIHADEILVMHAGEIVERG 141
+ D I+VM +G IV G
Sbjct: 201 LLDLVDRIIVMDSGRIVADG 220
Score = 66.8 bits (164), Expect = 3e-13
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G+ G+GKST+++LL Y SG + +D +I+ + A LR+ IG VPQD LF +++
Sbjct: 36 IGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95
Score = 42.6 bits (101), Expect = 7e-05
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 28 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
G +EFRNVSFSY E L N+S T+ AG+ +A++
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAII 36
Score = 40.3 bits (95), Expect = 4e-04
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 245 GAVEFRNVSFSYTP-ERAILKNISFTVPAG 273
G +EFRNVSFSY E L N+S T+ AG
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAG 30
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 89.6 bits (223), Expect = 5e-22
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRL 120
LSGG++QR+ +AR L P+I++LDE S LD + ER + A+ + A T I++AHR
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 121 STIIHADEILVMHAGEI 137
T+ AD ILV+ G +
Sbjct: 157 ETLASADRILVLEDGRV 173
Score = 52.6 bits (127), Expect = 2e-08
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
+G SG+GKST+ RL+ SG + +D +I L +G +PQD LF+ SI
Sbjct: 34 IGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSI 92
Score = 36.0 bits (84), Expect = 0.008
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 31 EFRNVSFSYT-PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
E NVSF Y E +L+N+SF++ G++LA++ SG K TL +
Sbjct: 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKS------TLARL 47
Score = 33.3 bits (77), Expect = 0.069
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 248 EFRNVSFSYT-PERAILKNISFTVPAGKTLA 277
E NVSF Y E +L+N+SF++ G++LA
Sbjct: 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLA 32
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 88.9 bits (221), Expect = 1e-21
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
SGGE+QR+A+AR LL+ IVLLDE T LD TER + S + V +T I + H L+
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLT 158
Query: 122 TIIHADEILVMHAGEIVERG 141
I H D+IL + G+I+ +G
Sbjct: 159 GIEHMDKILFLENGKIIMQG 178
Score = 51.9 bits (125), Expect = 3e-08
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
G+SG+GKST+++LL + G+I +D + + + +L I V+ Q LF+ ++
Sbjct: 35 GRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRPYLFDTTL 91
Score = 38.8 bits (91), Expect = 0.001
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 30 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
+ NVSFSY E+ +LKN+S + G+ +ALL SG K + + L +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 85 LDEATSALDTKTERNIQSALN 105
LD + K ++ S LN
Sbjct: 61 LDGVPVSDLEKALSSLISVLN 81
Score = 33.4 bits (77), Expect = 0.063
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 247 VEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
+ NVSFSY E+ +LKN+S + G+ +A
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIA 32
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 88.7 bits (221), Expect = 4e-21
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L P++++ DE TSALD + I L ++ T + + H
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
L + AD + VM+AG+IVE G
Sbjct: 206 LGVVAKIADRVAVMYAGKIVEEG 228
Score = 50.6 bits (122), Expect = 2e-07
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQD 200
VG+SG+GKST+ R + SG I D +++ +S+ R+ I +V QD
Sbjct: 37 VGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD 90
Score = 32.1 bits (74), Expect = 0.20
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 30 VEFRNVSFSYTPERA---ILKNISFTVPAGKTLALL--SG 64
+E +N+S S+ L ++SF++ G+TL L+ SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESG 41
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 247 VEFRNVSFSYTPERA---ILKNISFTVPAGKTLA 277
+E +N+S S+ L ++SF++ G+TL
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLG 35
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 91.0 bits (227), Expect = 1e-20
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 62 LSGGEKQRVAIARTLLK-APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGGE++R+ IAR LL AP ++LLDE T LD +TER I L ++T +++ HRL
Sbjct: 476 LSGGEQRRLGIARALLHDAP-LLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL 534
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQ 149
+ + D I VM G+I+E+G+ LL
Sbjct: 535 TGLEQFDRICVMDNGQIIEQGT-HQELLA 562
Score = 73.3 bits (181), Expect = 1e-14
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G++G GKST+++LL R +D + G+I ++ Q I S+A+LRQAI VV Q LF+ +++
Sbjct: 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431
Score = 42.5 bits (101), Expect = 1e-04
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6 DLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
++ ++ +V P Q ++ NVSF+Y + +LK +S + AG+ +ALL
Sbjct: 316 EITEQKPEVT-FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALL 372
Score = 38.7 bits (91), Expect = 0.003
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 223 DLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
++ ++ +V P Q ++ NVSF+Y + +LK +S + AG+ +A
Sbjct: 316 EITEQKPEVT-FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 87.6 bits (218), Expect = 1e-20
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+KQRV IAR L P+++L DEATSALD +T ++I + L + T +++ H
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200
Query: 120 LSTI--IHADEILVMHAGEIVERGSLF 144
+ + I D + VM GE+VE G++
Sbjct: 201 MEVVKRI-CDRVAVMEKGEVVEEGTVE 226
Score = 49.5 bits (119), Expect = 4e-07
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQDTVLFNN 206
+G+SGAGKST+IR + SG + +D ++ +S LR+A IG++ Q L ++
Sbjct: 37 IGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 85.5 bits (212), Expect = 4e-20
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G++Q + +AR LLK P++++LDEAT+++D T+ IQ + + T + +AHRL
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185
Query: 122 TIIHADEILVMHAGEIVERGS 142
TII D+ILVM AGE+ E
Sbjct: 186 TIIDYDKILVMDAGEVKEYDH 206
Score = 76.3 bits (188), Expect = 1e-16
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG++GAGKST+I LFRF + E G I ID +I T+ LR ++ ++PQD LF+ +I
Sbjct: 40 VGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTI- 98
Query: 210 AIQKNFVDMENMFD 223
++ +D + +
Sbjct: 99 ---RSNLDPFDEYS 109
Score = 28.9 bits (65), Expect = 2.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 28 GAVEFRNVSFSYTPE-RAILKNISFTVPAG 56
G +E N+S Y P+ +LKN+SF V AG
Sbjct: 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG 34
Score = 28.9 bits (65), Expect = 2.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 245 GAVEFRNVSFSYTPE-RAILKNISFTVPAG 273
G +E N+S Y P+ +LKN+SF V AG
Sbjct: 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG 34
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 83.8 bits (208), Expect = 9e-20
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 41 PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
P +L+NI+ LSGG++QRVA+AR L P ++LLDE TSALD T R +
Sbjct: 89 PHLTVLENIAL---------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 101 QSALNRVCAS--RTTIIVAHRLSTIIH-ADEILVMHAGE 136
++ L + A T ++V H L AD ++V+ G+
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
Score = 52.6 bits (127), Expect = 2e-08
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS--LRQAIG 195
+E G V+LL G SG+GKST++R + + +SG I ID +++ + LR+ IG
Sbjct: 23 IEAGE-IVALL--GPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79
Query: 196 VVPQDTVLFNN 206
+V QD LF +
Sbjct: 80 MVFQDFALFPH 90
Score = 36.0 bits (84), Expect = 0.008
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
+E +NVS Y ++ +L ++S + AG+ +ALL SG K TLL+ I L+E
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKS------TLLRC--IAGLEE 51
Query: 88 ATS 90
S
Sbjct: 52 PDS 54
Score = 30.2 bits (69), Expect = 0.63
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E +NVS Y ++ +L ++S + AG+ +A
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVA 30
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 88.0 bits (219), Expect = 1e-19
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++Q VA+AR LL+ P I+LLDE TSA+D ++E + L R A +T ++V HR S
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661
Query: 122 TIIHADEILVMHAGEIV 138
+ D I+VM G IV
Sbjct: 662 LLDLVDRIIVMDNGRIV 678
Score = 65.7 bits (161), Expect = 4e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
G+ G+GKST+++LL Y G + +D +I+ + A LR+ IG VPQD LF +++
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556
Score = 41.4 bits (98), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 27 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
QG +EFRNVSF+Y E L N+S T+ G+ +A++
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 244 QGAVEFRNVSFSYTP-ERAILKNISFTVPAG 273
QG +EFRNVSF+Y E L N+S T+ G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPG 491
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 83.7 bits (208), Expect = 2e-19
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L + P ++LLDE SALD K ++ L + TTI V H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ AD I VM+ G IV+ G
Sbjct: 191 QEEALALADRIAVMNEGRIVQVG 213
Score = 52.1 bits (126), Expect = 4e-08
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE G F++LL G SG GK+T++RL+ +SG+I ID +++ V R+ IG+V
Sbjct: 23 VEPGE-FLALL--GPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMV 77
Query: 198 PQDTVLF 204
QD LF
Sbjct: 78 FQDYALF 84
Score = 31.7 bits (73), Expect = 0.27
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEK 67
+E + +S +Y RA L ++S TV G+ LALL SG K
Sbjct: 1 LELKGLSKTYGSVRA-LDDLSLTVEPGEFLALLGPSGCGK 39
Score = 27.5 bits (62), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E + +S +Y RA L ++S TV G+ LA
Sbjct: 1 LELKGLSKTYGSVRA-LDDLSLTVEPGEFLA 30
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 87.0 bits (216), Expect = 3e-19
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
P G+ A LSGG+ QR+A+AR L+ ++LLDE T+ LD +TE + AL + RT
Sbjct: 451 PIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV 510
Query: 114 IIVAHRLSTIIHADEILVM 132
++V HRL+ AD I+V+
Sbjct: 511 LLVTHRLALAALADRIVVL 529
Score = 57.3 bits (139), Expect = 2e-09
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SGAGKST++ LL F D G I ++ + S R I VPQ LF +I
Sbjct: 354 VGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413
Query: 210 A 210
Sbjct: 414 E 414
Score = 41.1 bits (97), Expect = 4e-04
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 18 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIART 75
+AP+ ++EF VS +Y R L+ +SFTVP G+ +AL+ SG K T
Sbjct: 310 GKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKS------T 363
Query: 76 LLKA 79
LL
Sbjct: 364 LLNL 367
Score = 37.7 bits (88), Expect = 0.005
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 235 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+AP+ ++EF VS +Y R L+ +SFTVP G+ +A
Sbjct: 310 GKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVA 352
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 82.1 bits (204), Expect = 4e-19
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 22 MLCVAQGAVEFRNVSFSYTPERAILKNISFTVP-----------AGKTLALLSGGEKQRV 70
+L + G + + + + + I++ VP A + LSGGE+QRV
Sbjct: 48 LLKPSSGEILLDGKDLASLSPKELARKIAY-VPQALELLGLAHLADRPFNELSGGERQRV 106
Query: 71 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLS-TIIHAD 127
+AR L + P I+LLDE TS LD + + L R+ R T ++V H L+ +AD
Sbjct: 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYAD 166
Query: 128 EILVMHAGEIVERG 141
++++ G IV +G
Sbjct: 167 RVILLKDGRIVAQG 180
Score = 56.7 bits (138), Expect = 7e-10
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E G V +L G +GAGKST+++ L SG+I +D +++ ++S L + I V
Sbjct: 22 IEAGE-IVGIL--GPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78
Query: 198 PQ 199
PQ
Sbjct: 79 PQ 80
Score = 37.8 bits (89), Expect = 0.002
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 31 EFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
E N+S Y R +L ++S ++ AG+ + +L
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGIL 31
Score = 34.7 bits (81), Expect = 0.024
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 248 EFRNVSFSYTPERAILKNISFTVPAGKTLA 277
E N+S Y R +L ++S ++ AG+ +
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVG 29
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 85.0 bits (211), Expect = 4e-19
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
A + A LSGG+KQRVAIAR L P+I+L DEATSALD +T ++I L + T
Sbjct: 135 ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT 194
Query: 113 TIIVAHRLSTI--IHADEILVMHAGEIVERGSLF 144
+++ H + + I D + V+ G +VE G++
Sbjct: 195 IVLITHEMEVVKRI-CDRVAVLDQGRLVEEGTVS 227
Score = 54.6 bits (132), Expect = 1e-08
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQ 199
+G SGAGKST++RL+ SG +F+D Q++ +S+A LRQ IG++ Q
Sbjct: 38 IGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90
Score = 27.6 bits (62), Expect = 7.9
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 30 VEFRNVSFSY----TPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIV 83
+E NVS ++ T L ++S +P G+ ++ SG K TLL+ I
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKS------TLLRL--IN 53
Query: 84 LLDEATS 90
LL+ TS
Sbjct: 54 LLERPTS 60
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 82.6 bits (205), Expect = 7e-19
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ +AR L P+++LLDE TSALD + I+ + + T +IV H +
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQ 201
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
AD + G +VE G
Sbjct: 202 QAARVADRTAFLLNGRLVEFGP 223
Score = 47.6 bits (114), Expect = 1e-06
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTV 202
+G SG GKST++RLL R D+ G++ +D ++I + LR+ +G+V Q
Sbjct: 32 IGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91
Query: 203 LFNNSI 208
F SI
Sbjct: 92 PFPGSI 97
Score = 34.1 bits (79), Expect = 0.048
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+E R+++ Y ++ LK+IS +P G+ AL+ SG
Sbjct: 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSG 36
Score = 32.2 bits (74), Expect = 0.21
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E R+++ Y ++ LK+IS +P G+ A
Sbjct: 1 IELRDLNVYYG-DKHALKDISLDIPKGEITA 30
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 85.1 bits (211), Expect = 1e-18
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGE++R+A+AR LL + LLDE T LD TER + + L +T ++V HRL
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534
Query: 122 TIIHADEILVMHAGEIVERG 141
+ D I+V+ G+I+E G
Sbjct: 535 GLERMDRIIVLDNGKIIEEG 554
Score = 58.9 bits (143), Expect = 6e-10
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
+G+SG+GKST+++LL +D + G I ++ I ++ + +LR+ I V+ Q LF+ ++
Sbjct: 370 LGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTL 428
Score = 38.9 bits (91), Expect = 0.002
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 14 VIDIPQAPM--------LCVAQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLALL-- 62
+ DI A+E RNVSF+Y + LKN + T+ G+ +A+L
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGR 372
Query: 63 SGGEKQRVA--IARTL-LKAPQIVLLDEATSALDTKTERNIQSALN 105
SG K + +A + I L ++LD + R S L
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418
Score = 35.8 bits (83), Expect = 0.024
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 231 VIDIPQAPM--------LCVAQGAVEFRNVSFSY-TPERAILKNISFTVPAGKTLA 277
+ DI A+E RNVSF+Y + LKN + T+ G+ +A
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVA 368
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 85.2 bits (211), Expect = 1e-18
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 17 IPQAPMLCVAQGAVEFRNVSFSY--------TPERAILKNISFTVPAGKTLALLSGGE-- 66
IPQAP+L G V F F+ + ERA LK++ G + GE
Sbjct: 1318 IPQAPVL--FSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375
Query: 67 ----KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122
+Q +++AR LL+ +I++LDEAT+A+D +T+ IQ + S T +I+AHRL+T
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435
Query: 123 IIHADEILVMHAGEIVE----------RGSLFVSLLQVGQSGAGKSTIIR-LLFRFYDVE 171
II D ILV+ AG +VE GS F ++Q +GA + +R L+F +
Sbjct: 1436 IIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ--STGAANAQYLRSLVFGGDEDR 1493
Query: 172 SGDIFIDNQNIKTVSQASLRQAI 194
+ + AS R A
Sbjct: 1494 LAREESKALDGQRKWLASSRWAA 1516
Score = 63.2 bits (154), Expect = 4e-11
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG++GAGKS+++ LFR ++E G I ID +I LR+ +G++PQ VLF+ +++
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Score = 55.5 bits (134), Expect = 1e-08
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
+SGG+KQRV++AR + + + D+ SALD R + + +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800
Query: 121 STIIHADEILVMHAGEIVERGS 142
+ D I+++H G I E G+
Sbjct: 801 HFLSQVDRIILVHEGMIKEEGT 822
Score = 32.8 bits (75), Expect = 0.20
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 181 NIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPML 240
NI ++ A LR A L NS+ A+++ + DL E VI+ + P
Sbjct: 1184 NITSLLTAVLRLA--------SLAENSLNAVER----VGTYIDLPSEAPLVIENNRPPPG 1231
Query: 241 CVAQGAVEFRNVSFSYTPE-RAILKNISFTV 270
+ G+++F +V Y PE +L +SF +
Sbjct: 1232 WPSSGSIKFEDVVLRYRPELPPVLHGLSFEI 1262
Score = 30.1 bits (68), Expect = 1.6
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 2 ENMFDLLQETCDVIDIPQAPMLCV----------AQGAVEFRNVSFSYTPE-RAILKNIS 50
EN + ++ ID+P L + + G+++F +V Y PE +L +S
Sbjct: 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 1259
Query: 51 FTV 53
F +
Sbjct: 1260 FEI 1262
Score = 28.6 bits (64), Expect = 4.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 21 PMLCVAQGAVEFRNVSFSYTP--ERAILKNISFTVPAGKTLALLSG-GE 66
P L A+ +N FS+ ER L NI+ VP G +A++ GE
Sbjct: 606 PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGE 654
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 81.0 bits (201), Expect = 2e-18
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L+ P+I+L DE T LD+KT + + L + R T I+V H
Sbjct: 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202
Query: 120 LSTIIHADEILVMHAGEIVE 139
+AD ++ + G+I E
Sbjct: 203 PELAKYADRVIELKDGKIEE 222
Score = 42.9 bits (102), Expect = 6e-05
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 23/107 (21%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQA 193
+E G FV++ VG SG+GKST++ LL SG++ I+ +++ +S+ L R+
Sbjct: 28 IEAGE-FVAI--VGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKK 84
Query: 194 IGVVPQD-------TVLFN---------NSIKAIQKNFVDMENMFDL 224
IG V Q+ TVL N S ++ ++ + L
Sbjct: 85 IGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGL 131
Score = 30.2 bits (69), Expect = 0.81
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 29 AVEFRNVSFSYT---PERAILKNISFTVPAGKTLALL--SG 64
+E +NVS Y + LK+++ + AG+ +A++ SG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSG 41
Score = 28.6 bits (65), Expect = 3.1
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 246 AVEFRNVSFSYT---PERAILKNISFTVPAGKTLA 277
+E +NVS Y + LK+++ + AG+ +A
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVA 35
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 80.2 bits (199), Expect = 3e-18
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGG+KQRVAIA L P I+LLDE T+ LD R + L ++ A TII+ H L
Sbjct: 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194
Query: 121 STII-HADEILVMHAGE 136
++ AD ++V+ G+
Sbjct: 195 DLLLELADRVIVLEDGK 211
Score = 55.2 bits (134), Expect = 4e-09
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+++G FV + VG +G+GKST++RLL SG++ +D +++ +S LR+ +G+V
Sbjct: 24 IKKGE-FVLI--VGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80
Query: 198 PQD 200
Q+
Sbjct: 81 FQN 83
Score = 40.1 bits (95), Expect = 5e-04
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 31 EFRNVSFSY-TPERAILKNISFTVPAGKTLALL 62
E +N+SFSY R L +IS T+ G+ + ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIV 33
Score = 37.8 bits (89), Expect = 0.003
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 248 EFRNVSFSY-TPERAILKNISFTVPAGKTLA 277
E +N+SFSY R L +IS T+ G+ +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVL 31
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 80.8 bits (200), Expect = 4e-18
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+KQRVAIA L P+I+LLDE T+ LD K R + L ++ T IIV H
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
L ++ +AD ++V+ G+I+ G
Sbjct: 199 LELVLEYADRVVVLDDGKILADGD 222
Score = 44.9 bits (107), Expect = 1e-05
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SGGEKQRVAIARTLLKAPQIVL 84
+E N+SF Y +A LK++S + G+ + L+ SG + L VL
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 85 LDEATSALDTKTERNIQSALNRV 107
+D LDT +E+++ +V
Sbjct: 63 VDG----LDTSSEKSLLELRQKV 81
Score = 42.6 bits (101), Expect = 9e-05
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV-SQASLRQAIGVVPQD 200
+G +G+GKST+++LL SG++ +D + + S LRQ +G+V Q+
Sbjct: 36 IGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQN 87
Score = 39.5 bits (93), Expect = 0.001
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E N+SF Y +A LK++S + G+ +
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVL 34
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 83.6 bits (207), Expect = 4e-18
Identities = 39/81 (48%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
+SGG+KQR+A+AR LL ++++LDE+TS LDT TE+ I + L + +T I VAHRLS
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLS 670
Query: 122 TIIHADEILVMHAGEIVERGS 142
+D+I+V+ G+I+E+GS
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGS 691
Score = 61.3 bits (149), Expect = 1e-10
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG+GKST+ +LL F+ SG+I ++ ++K + + +LRQ I +PQ+ +F+ SI
Sbjct: 506 VGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564
Score = 28.6 bits (64), Expect = 4.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 28 GAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL--LSGGEKQRVA 71
G + +VS+SY IL +IS T+ + +SG K +A
Sbjct: 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 83.5 bits (206), Expect = 5e-18
Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTT 113
G + LSGG+KQR++IAR +++ P+I++LDEATS+LD K+E +Q +N + +R T
Sbjct: 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633
Query: 114 IIVAHRLSTIIHADEILVM 132
II+AHRLSTI +A+ I V+
Sbjct: 634 IIIAHRLSTIRYANTIFVL 652
Score = 80.1 bits (197), Expect = 8e-17
Identities = 39/82 (47%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASR 111
P GK+L SGG+KQR+AIAR LL+ P+I+LLDEATS+LD+ +E+ I+ + + A +
Sbjct: 1354 PYGKSL---SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 112 TTIIVAHRLSTIIHADEILVMH 133
T I +AHR+++I +D+I+V +
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFN 1432
Score = 69.3 bits (169), Expect = 4e-13
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG GKSTI++L+ R YD GDI I D+ N+K ++ R IGVV QD +LF+NSI
Sbjct: 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476
Query: 209 KAIQK----NFVDMENMFDLLQE-TCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAI 262
K K + D+E + + E D + C A+ A + ++S + I
Sbjct: 477 KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535
Score = 43.5 bits (102), Expect = 1e-04
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 37/118 (31%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFI------------------DNQNI--KTVSQAS 189
VG++G+GKST++ LL RFYD+++ + + QN+ K V++ S
Sbjct: 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259
Query: 190 LRQAIGVVPQDTVLFNNSIKAI-------QKNFVDMENMFDLLQETCDVIDIPQAPML 240
L + G +D+ +F NS K + N D+ N+F + + Q PML
Sbjct: 1260 LTKE-GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI---------VSQEPML 1307
Score = 30.8 bits (69), Expect = 1.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 30 VEFRNVSFSYTPER--AILKNISFTVPAGKTLALL 62
++F+NV F Y + I K+++FT+ GKT A +
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFV 417
Score = 30.4 bits (68), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 247 VEFRNVSFSYTPER--AILKNISFTVPAGKTLA 277
++F+NV F Y + I K+++FT+ GKT A
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415
Score = 30.0 bits (67), Expect = 1.6
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 48/190 (25%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK------ 78
+G +E +V+F Y P I K+++F+ + KT A++ + + L++
Sbjct: 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 79 APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIV 138
IV +E T+ D E++ Q + + + + E
Sbjct: 1223 DHHIVFKNEHTN--DMTNEQDYQGDEEQ---------------------NVGMKNVNEF- 1258
Query: 139 ERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP 198
SL + G SG ST+ + SG I +D +I + LR +V
Sbjct: 1259 -------SLTKEGGSGE-DSTVFK--------NSGKILLDGVDICDYNLKDLRNLFSIVS 1302
Query: 199 QDTVLFNNSI 208
Q+ +LFN SI
Sbjct: 1303 QEPMLFNMSI 1312
Score = 27.7 bits (61), Expect = 8.0
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G +E +V+F Y P I K+++F+ + KT A
Sbjct: 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTA 1198
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 79.8 bits (198), Expect = 5e-18
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVA-HR 119
LSGG++QRVAIAR L P+I+L DE T LD++T + + L + TTI+V H
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200
Query: 120 LSTIIHADEILVMHAGEI 137
+AD I+ + G+I
Sbjct: 201 PELAEYADRIIELRDGKI 218
Score = 44.4 bits (106), Expect = 2e-05
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQA 193
+E+G FV++ VG SG+GKST++ +L SG++ +D +I +S+ L R+
Sbjct: 27 IEKGE-FVAI--VGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRH 83
Query: 194 IGVVPQD 200
IG V Q
Sbjct: 84 IGFVFQS 90
Score = 34.4 bits (80), Expect = 0.034
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 30 VEFRNVSFSYTP---ERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVL 84
+E +N+S +Y + LK +S ++ G+ +A++ SG K TLL +
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS------TLLN--ILGG 52
Query: 85 LDEATS 90
LD TS
Sbjct: 53 LDRPTS 58
Score = 29.8 bits (68), Expect = 1.4
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 247 VEFRNVSFSYTP---ERAILKNISFTVPAGKTLA 277
+E +N+S +Y + LK +S ++ G+ +A
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVA 34
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 81.9 bits (203), Expect = 1e-17
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L P++++LDE SALD + + + L + T + ++H
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L+ + + AD + VM+ G IVE G
Sbjct: 490 LAVVRYIADRVAVMYDGRIVEEGP 513
Score = 79.5 bits (197), Expect = 7e-17
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG +QRV IA L P++++ DE T+ALD T+ I L + + + H
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L + AD ++VM+ GEIVE G
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGP 238
Score = 42.6 bits (101), Expect = 1e-04
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 150 VGQSGAGKST----IIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQDT 201
VG+SG+GKST ++ LL + SG++ +D +++ +S+ +R+ I ++ QD
Sbjct: 41 VGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100
Query: 202 V-LFN 205
+ N
Sbjct: 101 MTSLN 105
Score = 41.4 bits (98), Expect = 4e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQD 200
VG+SG+GKST+ R+L SG I D Q++ LR+ I +V QD
Sbjct: 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Score = 33.7 bits (78), Expect = 0.089
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 18 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+P+L V VEF + ++++SF V G+ L ++ SG
Sbjct: 1 MMSPLLEVENLTVEFA----TDGGRVPAVRDVSFEVEPGEILGIVGESG 45
Score = 31.0 bits (71), Expect = 0.70
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 235 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+P+L V VEF + ++++SF V G+ L
Sbjct: 1 MMSPLLEVENLTVEFA----TDGGRVPAVRDVSFEVEPGEILG 39
Score = 28.7 bits (65), Expect = 3.8
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 15 IDIPQAPMLCVAQGAVEFRNVSFSYTPERAI----------LKNISFTVPAGKTLALL-- 62
I A+ + RN+S Y + + + ++SF + G+TL L+
Sbjct: 266 IIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGE 325
Query: 63 SGGEKQRVAIARTLL 77
SG K +AR L
Sbjct: 326 SGSGKS--TLARILA 338
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 79.6 bits (197), Expect = 1e-17
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QR+AIAR L+ P++++LDE TSALD + I + L + R T + ++H
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L+ + H D I VM G+IVE G
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGP 225
Score = 37.6 bits (88), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGVVPQD 200
VG+SG+GKST+ RLL SG I +D + + + + + +V QD
Sbjct: 39 VGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD 90
Score = 33.4 bits (77), Expect = 0.10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 29 AVEFRNVSFSY---TPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIV 83
+ RN+S Y L N+S + G+TL ++ SG K TL + +
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKS------TLARL--LA 54
Query: 84 LLDEATS 90
L++ +S
Sbjct: 55 GLEKPSS 61
Score = 29.9 bits (68), Expect = 1.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 246 AVEFRNVSFSY---TPERAILKNISFTVPAGKTLA 277
+ RN+S Y L N+S + G+TL
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLG 37
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 82.3 bits (203), Expect = 2e-17
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 17 IPQAPMLCVAQGAVEFRNVSFS--------YTPERAILKNISFTVPAGKTLALLSGGE-- 66
IPQ+P+L G V F FS ERA +K++ P G + GGE
Sbjct: 1315 IPQSPVL--FSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372
Query: 67 ----KQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLST 122
+Q +++AR LL+ +I++LDEAT+++D +T+ IQ + S T +++AHRL+T
Sbjct: 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432
Query: 123 IIHADEILVMHAGEIVERGS 142
II D+ILV+ +G+++E S
Sbjct: 1433 IIDCDKILVLSSGQVLEYDS 1452
Score = 56.5 bits (136), Expect = 5e-09
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG++GAGKS+++ LFR ++E G I ID+ ++ LR+ + ++PQ VLF+ +++
Sbjct: 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327
Score = 48.0 bits (114), Expect = 3e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
+SGG+KQRV++AR + I + D+ SALD + S + +T ++V ++L
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVG 151
+ D I+++ G I E G+ F L + G
Sbjct: 801 HFLPLMDRIILVSEGMIKEEGT-FAELSKSG 830
Score = 28.8 bits (64), Expect = 4.6
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 181 NIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPML 240
NI T+ LRQA NS+ ++++ + N DL E +I+ +
Sbjct: 1181 NITTLLSGVLRQASKA--------ENSLNSVER----VGNYIDLPSEATAIIENNRPVSG 1228
Query: 241 CVAQGAVEFRNVSFSYTPE-RAILKNISFTV 270
++G+++F +V Y P +L +SF V
Sbjct: 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFV 1259
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 78.8 bits (195), Expect = 3e-17
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 15/90 (16%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTI 114
LSGG++QR+ IAR L P++++ DE SALD + I Q L T
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG------LTY 163
Query: 115 I-VAHRLSTIIH-ADEILVMHAGEIVERGS 142
+ ++H LS + + +D I VM+ G+IVE G
Sbjct: 164 LFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
Score = 42.6 bits (101), Expect = 9e-05
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 194
VG+SG GKST+ RL+ + SG+I + ++I +S+ R+ +
Sbjct: 45 VGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERV 89
Score = 29.5 bits (67), Expect = 1.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 45 ILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDEATS 90
+ +SF++ G+TL L+ SG K + R +L L+E TS
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKS--TLGRLILG------LEEPTS 67
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 76.8 bits (190), Expect = 7e-17
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
+ + LSGG++QRV +AR L++ P ++LLDE + +D KT+ +I L + TI+
Sbjct: 128 RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILV 187
Query: 116 VAHRLSTII-HADEILVM 132
V H L ++ + D +L++
Sbjct: 188 VTHDLGLVLEYFDRVLLL 205
Score = 36.4 bits (85), Expect = 0.009
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 31 EFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
E +++ SY +L+++SF V G+ LA++ +G K TLLKA
Sbjct: 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKS------TLLKA 44
Score = 32.5 bits (75), Expect = 0.14
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 248 EFRNVSFSYTPERAILKNISFTVPAGKTLA 277
E +++ SY +L+++SF V G+ LA
Sbjct: 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLA 29
Score = 32.1 bits (74), Expect = 0.20
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V+ G F+++ VG +GAGKST+++ + SG I + + ++ R+ IG V
Sbjct: 22 VKPGE-FLAI--VGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE-----RKRIGYV 73
Query: 198 PQ 199
PQ
Sbjct: 74 PQ 75
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 78.1 bits (193), Expect = 8e-17
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG KQR++IA LL P++++LDE TS LD ++ R I L + T ++ H
Sbjct: 137 LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI 196
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
L D +++++ G+I+ G+
Sbjct: 197 LEEAEELCDRVIILNDGKIIAEGTP 221
Score = 52.3 bits (126), Expect = 6e-08
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE G +F LL G +GAGK+T++++L SG+I + ++ A +R+ IG V
Sbjct: 28 VEPGEIFG-LL--GPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYV 83
Query: 198 PQDTVLFNN 206
PQ+ L+
Sbjct: 84 PQEPSLYPE 92
Score = 38.8 bits (91), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E RN++ Y ++ L +SF V G+ LL
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLL 37
Score = 35.0 bits (81), Expect = 0.034
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E RN++ Y ++ L +SF V G+
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFG 35
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 78.5 bits (194), Expect = 1e-16
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L+ P+++LLDE SALD K ++ L + T + V H
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ +D I VM+ G I + G+
Sbjct: 197 QEEALAMSDRIAVMNDGRIEQVGT 220
Score = 53.8 bits (130), Expect = 2e-08
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+++G FV+LL G SG GK+T++R++ F SG+I +D ++I V ++ IG+V
Sbjct: 28 IKKGE-FVTLL--GPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMV 82
Query: 198 PQDTVLF 204
Q LF
Sbjct: 83 FQSYALF 89
Score = 34.6 bits (80), Expect = 0.045
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 26 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+ A+E RNVS S+ A + +IS + G+ + LL SG
Sbjct: 2 PKPALEIRNVSKSFGDFTA-VDDISLDIKKGEFVTLLGPSG 41
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 243 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+ A+E RNVS S+ A + +IS + G+ +
Sbjct: 2 PKPALEIRNVSKSFGDFTA-VDDISLDIKKGEFVT 35
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 75.8 bits (187), Expect = 3e-16
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII-VAHR 119
LSGGE+QRVAIAR L+ P+I+LLDE SALD +T+ ++ L ++ T++ V H
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
Query: 120 LSTI-IHADEILVMHAGEIVERGSL 143
AD++ +M G++++ G
Sbjct: 190 FEEAWALADKVAIMLNGKLIQVGKP 214
Score = 48.5 bits (116), Expect = 9e-07
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VERG FV L G +G+GKS ++ + F +SG I ++ ++I + ++ I V
Sbjct: 22 VERGDYFVIL---GPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYV 76
Query: 198 PQDTVLFNNSIKAIQKN 214
PQ+ LF + + KN
Sbjct: 77 PQNYALFPH--MTVYKN 91
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 74.8 bits (185), Expect = 3e-16
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCA-SRTTIIVAHR 119
LSGG+KQR+++AR + I LLD+ SA+D R+I ++ + + ++T I+V H+
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187
Query: 120 LSTIIHADEILVMHAGE 136
L + HAD+I+V+ G
Sbjct: 188 LQLLPHADQIVVLDNGR 204
Score = 34.0 bits (79), Expect = 0.049
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 30 VEFRNVSFSYTPERA----ILKNISFTVPAGK 57
+ + SF++ LK+I+ VP G+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGE 32
Score = 34.0 bits (79), Expect = 0.049
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 247 VEFRNVSFSYTPERA----ILKNISFTVPAGK 274
+ + SF++ LK+I+ VP G+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGE 32
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 73.7 bits (182), Expect = 3e-16
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGGE+QR+A AR LL P+ V LDEATSALD ++E + L + T+I V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHRP 148
Query: 121 STIIHADEIL 130
S D +L
Sbjct: 149 SLWKFHDRVL 158
Score = 29.4 bits (67), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 30 VEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
+E N+S TP+ R +LK++SF + G L + SG K +L +A
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGK------SSLFRA 46
Score = 29.0 bits (66), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQA------SL 190
++ G LL G SG GKS++ R L + SG I + + +++ + Q +L
Sbjct: 24 IKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL 80
Query: 191 RQAIGVVPQDTVL 203
R+ + + P D VL
Sbjct: 81 REQL-IYPWDDVL 92
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 247 VEFRNVSFSYTPE-RAILKNISFTVPAGKTL 276
+E N+S TP+ R +LK++SF + G L
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRL 30
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 76.8 bits (190), Expect = 4e-16
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTII 115
A LSGG+KQRVAIAR L P+++L DEATSALD T R+I L + +R T ++
Sbjct: 139 AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI--NRELGLTIVL 196
Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGSLF 144
+ H + + D + V+ AG +VE+G++
Sbjct: 197 ITHEMDVVKRICDRVAVIDAGRLVEQGTVS 226
Score = 46.3 bits (111), Expect = 8e-06
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 138 VERGSLF-VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA--- 193
+ G +F V +G SGAGKST+IR + SG + +D Q++ +S+ LR+A
Sbjct: 28 IPAGEIFGV----IGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83
Query: 194 IGVVPQ 199
IG++ Q
Sbjct: 84 IGMIFQ 89
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 74.1 bits (183), Expect = 4e-16
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
LSGGE++RV+IA L+ P ++ LDE TS LD+ + + S L R+ RT I H+
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171
Query: 121 STIIHA--DEILVMHAGEIVERG 141
S+ I D++L++ G ++ G
Sbjct: 172 SSEIFELFDKLLLLSQGRVIYFG 194
Score = 40.6 bits (96), Expect = 3e-04
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 151 GQSGAGKSTIIRLL--FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
G SGAGKST++ L R SG++ I+ + + + S R+ IG VPQD +L
Sbjct: 42 GPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILH 94
Score = 27.9 bits (63), Expect = 5.2
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 30 VEFRNVSFSYTPE-----RAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
+ FRN++ + + +LKN+S G+ A++ SG K TLL A
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKS------TLLNA 54
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 75.7 bits (187), Expect = 6e-16
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG +QRV IA L P++++ DE T+ALD + I L + + T I++ H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
L + AD + VM+AG IVE G
Sbjct: 214 LGVVAEIADRVAVMYAGRIVEEGP 237
Score = 42.9 bits (102), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 150 VGQSGAGKST----IIRLL-FRFYDVESGDIFIDNQNIKTVSQASLRQ----AIGVVPQD 200
VG+SG+GKS I+ LL + G+I D +++ ++S+ LR+ I ++ QD
Sbjct: 37 VGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96
Score = 27.5 bits (62), Expect = 8.5
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 34 NVSFSYTPERAI--LKNISFTVPAGKTLALLSGGE 66
+VSF T + + +SF + G+ L ++ GE
Sbjct: 8 SVSF-PTDAGVVKAVDGVSFELKKGEILGIV--GE 39
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 73.2 bits (181), Expect = 7e-16
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGG KQR+A+A+ LL P++++LDE TS LD ++ R L + TI+++ H L
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 121 STIIH-ADEILVMHAGEI 137
D + +++ G I
Sbjct: 156 EEAERLCDRVAILNNGRI 173
Score = 53.2 bits (129), Expect = 1e-08
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE+G LL G +GAGK+T+I+++ +SG+I + ++IK +++ IG +
Sbjct: 23 VEKGE-IYGLL--GPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEVKRRIGYL 78
Query: 198 PQDTVLFNN 206
P++ L+ N
Sbjct: 79 PEEPSLYEN 87
Score = 37.8 bits (89), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E RN+S Y ++ L +IS TV G+ LL
Sbjct: 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLL 32
Score = 33.9 bits (79), Expect = 0.043
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E RN+S Y ++ L +IS TV G+
Sbjct: 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYG 30
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 72.8 bits (180), Expect = 8e-16
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 54/162 (33%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL---------------------------- 61
+E R ++ + +A L +S +V G+ AL
Sbjct: 1 LELRGITKRFGGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59
Query: 62 -----------------------LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 98
LS GE+Q V IAR L + ++++LDE T+AL
Sbjct: 60 DGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 99 NIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 138
+ + R+ A +I ++HRL + AD + V+ G +V
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
Score = 44.3 bits (106), Expect = 1e-05
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QA 188
L + GE+ +LL G++GAGKST++++L Y +SG+I +D + + S +
Sbjct: 21 LSVRRGEVH-------ALL--GENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD 71
Query: 189 SLRQAIGVVPQ 199
+ R I +V Q
Sbjct: 72 ARRAGIAMVYQ 82
Score = 27.8 bits (63), Expect = 4.6
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E R ++ + +A L +S +V G+ A
Sbjct: 1 LELRGITKRFGGVKA-LDGVSLSVRRGEVHA 30
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 73.1 bits (180), Expect = 1e-15
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGEKQRVA+AR L P+++LLDE SALD + L ++ + I V H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
LS + AD I+VM G + G
Sbjct: 192 LSEAEYLADRIVVMEDGRLQYIG 214
Score = 33.4 bits (77), Expect = 0.069
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFID-------NQNIKTVSQASLRQAIGVVPQDTV 202
G SGAGKST++R + + G I ++ + I Q ++ IG+V Q
Sbjct: 29 FGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQ---QRKIGLVFQQYA 85
Query: 203 LF 204
LF
Sbjct: 86 LF 87
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 74.3 bits (183), Expect = 1e-15
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
LSGG+KQRVAIA L P+I++ DE+TS LD K +R I+ + R +T I + H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
+ I AD+++V G+++ +G
Sbjct: 203 MDEAILADKVIVFSEGKLIAQGK 225
Score = 39.6 bits (93), Expect = 8e-04
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 27 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLALL 62
++ NVSFSY E LKN+SF + G+ +A+L
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAIL 41
Score = 38.0 bits (89), Expect = 0.003
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 244 QGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
++ NVSFSY E LKN+SF + G+ +A
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVA 39
Score = 38.0 bits (89), Expect = 0.003
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQ 199
+G +G+GKSTI ++L +SG+I ID T+S+ +L++ IG++ Q
Sbjct: 41 LGHNGSGKSTISKILTGLLKPQSGEIKIDG---ITISKENLKEIRKKIGIIFQ 90
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 74.9 bits (185), Expect = 2e-15
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTII-VAHR 119
LSGGEKQRVAI R LL AP+++L+DE ++LD +R + L R+ I+ V+H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
L I+ AD ++V+ G++ G L
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPL 213
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 72.6 bits (179), Expect = 3e-15
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L++ P+++L DE ++LD + R + L R+ T I+ H+
Sbjct: 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
+ +AD I+ + G IV G
Sbjct: 205 VDLAREYADRIVGLKDGRIVFDGP 228
Score = 47.2 bits (113), Expect = 2e-06
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---I 194
+ G FV+L+ G SGAGKST++R L + SG + ID +I + +LRQ I
Sbjct: 24 INPGE-FVALI--GPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80
Query: 195 GVVPQD 200
G++ Q
Sbjct: 81 GMIFQQ 86
Score = 32.2 bits (74), Expect = 0.19
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 31 EFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK---------A 79
E N+S +Y + LK++S ++ G+ +AL+ SG K TLL+ +
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKS------TLLRCLNGLVEPTS 55
Query: 80 PQIVLLDEATSALDTKTERNIQS 102
+++ + L K R ++
Sbjct: 56 GSVLIDGTDINKLKGKALRQLRR 78
Score = 29.1 bits (66), Expect = 2.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 248 EFRNVSFSYTPERAILKNISFTVPAGKTLA 277
E N+S +Y + LK++S ++ G+ +A
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVA 31
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 72.1 bits (178), Expect = 4e-15
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG +QRVA+AR L P ++LLDE SALD T +Q L + T ++V H
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
Query: 120 LSTIIH-ADEILVMHA--GEIVER 140
+ + AD ++V+ A G IV
Sbjct: 192 IDEAVFLADRVVVLSARPGRIVAE 215
Score = 48.6 bits (117), Expect = 7e-07
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE G FV+L VG SG GKST++R++ SG++ +D + + G V
Sbjct: 27 VEEGE-FVAL--VGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYV 78
Query: 198 PQDTVLF 204
Q L
Sbjct: 79 FQQDALL 85
Score = 33.2 bits (77), Expect = 0.097
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 30 VEFRNVSFSY---TPERAILKNISFTVPAGKTLALL--SG 64
+E RNVS +Y L++IS +V G+ +AL+ SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSG 40
Score = 29.7 bits (68), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 247 VEFRNVSFSY---TPERAILKNISFTVPAGKTLA 277
+E RNVS +Y L++IS +V G+ +A
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVA 34
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 72.5 bits (179), Expect = 4e-15
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG++QRVAIAR L P+++L DE TSALD + + + + T IIV H +
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
AD ++ M G+I+E G
Sbjct: 197 GFAREVADRVIFMDQGKIIEEGP 219
Score = 46.7 bits (112), Expect = 3e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLF 204
+G SG+GKST++R L + +SG I +D +++ LR+ +G+V Q LF
Sbjct: 34 IGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
Score = 30.6 bits (70), Expect = 0.79
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
+E +N+S S+ + +LK IS +V G+ + ++ SG K TLL+ + L+E
Sbjct: 3 IEIKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKS------TLLRC--LNGLEE 53
Query: 88 ATS 90
S
Sbjct: 54 PDS 56
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 72.6 bits (178), Expect = 4e-15
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++LLDE TSALD + I+ L + + T +IV H +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206
Query: 122 TIIH-ADEILVMHAGEIVERG 141
I AD I M+ GE++E G
Sbjct: 207 QAIRIADYIAFMYRGELIEYG 227
Score = 34.5 bits (79), Expect = 0.034
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 150 VGQSGAGKSTIIRLLFRFYD------VESGDIFIDNQNI--KTVSQASLRQAIGVVPQDT 201
+G SG GK+T++R + R D VE G I+ Q+I + R+ +G+V Q
Sbjct: 35 IGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93
Query: 202 VLFNNSI 208
F SI
Sbjct: 94 TPFPMSI 100
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 72.5 bits (178), Expect = 6e-15
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+KQRVAIA L P +++LDEATS LD +N+ + +V + T I + H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 120 LSTIIHADEILVMHAGEIVERG 141
LS + AD ++VM+ G + + G
Sbjct: 203 LSEAMEADHVIVMNKGTVYKEG 224
Score = 42.0 bits (99), Expect = 1e-04
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
VG +G+GKSTI +L+ V+SG+IF +NQ I + LR+ IG+V Q+
Sbjct: 41 VGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN 91
Score = 33.6 bits (77), Expect = 0.088
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 30 VEFRNVSFSYTPERAI-LKNISFTVPAGK 57
+ F+NVSF Y + + LK++SF +P G+
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQ 36
Score = 33.6 bits (77), Expect = 0.088
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 247 VEFRNVSFSYTPERAI-LKNISFTVPAGK 274
+ F+NVSF Y + + LK++SF +P G+
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQ 36
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 73.5 bits (181), Expect = 1e-14
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-T 112
P G TL SGG++QR+A+AR L P++V+LDE S LD + E+ + +A+ + A T
Sbjct: 450 PGGATL---SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506
Query: 113 TIIVAHRLSTIIHADEILVMHAGEI 137
+++ HR S + D+ILV+ G I
Sbjct: 507 VVVITHRPSLLGCVDKILVLQDGRI 531
Score = 43.5 bits (103), Expect = 7e-05
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G SG+GKST+ RL+ + SG + +D ++K + + + IG +PQD LF ++
Sbjct: 350 IGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409
Query: 210 A 210
Sbjct: 410 E 410
Score = 31.9 bits (73), Expect = 0.32
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 3 NMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTLAL 61
+ + +P+ +G + NV+ + L+ ISF++ AG+ LA+
Sbjct: 296 ELLANYPSRDPAMPLPEP------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAI 349
Query: 62 L--SGGEKQRVAIARTLL 77
+ SG K +AR ++
Sbjct: 350 IGPSGSGKS--TLARLIV 365
Score = 31.9 bits (73), Expect = 0.34
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 192 QAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRN 251
AIG Q F+ + +A ++ + + + +P+ +G + N
Sbjct: 276 GAIGGWKQ----FSGARQAYKR----LNELLANYPSRDPAMPLPEP------EGHLSVEN 321
Query: 252 VSFSYTPERA-ILKNISFTVPAGKTLA 277
V+ + L+ ISF++ AG+ LA
Sbjct: 322 VTIVPPGGKKPTLRGISFSLQAGEALA 348
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 71.4 bits (176), Expect = 1e-14
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
A + + LSGGE+QRV IAR L + I+LLDE TS LD + + L + + T
Sbjct: 132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191
Query: 113 TIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
++V H L+ +AD ++++ G+IV +G+
Sbjct: 192 VVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
Score = 54.1 bits (131), Expect = 1e-08
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ +G +L G +G+GKST+++ L +SG++ +D ++I ++S L + + V
Sbjct: 25 IPKGE-ITGIL--GPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81
Query: 198 PQDTVLFNN 206
PQ
Sbjct: 82 PQSPSAPFG 90
Score = 41.4 bits (98), Expect = 2e-04
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SGGEKQRV--AIARTL-LKAPQ 81
+E N+SF Y + IL ++SF++P G+ +L SG K + +A L K+ +
Sbjct: 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSG--KSTLLKCLAGLLKPKSGE 58
Query: 82 IVLLDEATSALDTK 95
++L + ++L K
Sbjct: 59 VLLDGKDIASLSPK 72
Score = 37.9 bits (89), Expect = 0.003
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E N+SF Y + IL ++SF++P G+
Sbjct: 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITG 32
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 72.3 bits (178), Expect = 2e-14
Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LSGGE+QR+A AR LL P+ V LDEATSALD +TE + L T I V HR
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Score = 36.1 bits (84), Expect = 0.016
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 68 QRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHAD 127
R+A R L+A Q +DT+ ++ + I + LS
Sbjct: 357 LRLAEFRQALEAAQ----------MDTEKPARTGRRIDFDDNADHGITL-ENLSLRTPDG 405
Query: 128 EILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVS 186
+ L+ V G LL G+SGAGK++++R L + SG I + + + +
Sbjct: 406 QTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLP 462
Query: 187 QA------SLRQAI 194
Q +LR+A+
Sbjct: 463 QRPYLPQGTLREAL 476
Score = 28.4 bits (64), Expect = 4.6
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 176 FIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIP 235
FIDN + +A+L + F +++A Q D + I
Sbjct: 342 FIDNYDAIADWRATLLRLAE--------FRQALEAAQM---------DTEKPARTGRRID 384
Query: 236 QAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTL 276
A + N+S + +L ++F V G+ L
Sbjct: 385 FD---DNADHGITLENLSLRTPDGQTLLSELNFEVRPGERL 422
Score = 28.0 bits (63), Expect = 5.9
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 24 CVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
A + N+S + +L ++F V G+ L + SG K +LL+A
Sbjct: 387 DNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGK------TSLLRA 438
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 70.0 bits (172), Expect = 2e-14
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
A + + LSGG++QRVAIAR L+ P+++LLDE ALD K +++Q L R+ T
Sbjct: 124 ANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT 183
Query: 113 TIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
+ V H + +D I VM+ G+I + G+
Sbjct: 184 FVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
Score = 46.1 bits (110), Expect = 5e-06
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
++ G F +LL G SG GK+T++RL+ F SG+I +D ++I + R + V
Sbjct: 23 IKEGE-FFTLL--GPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRP-VNTV 77
Query: 198 PQDTVLFNN 206
Q+ LF +
Sbjct: 78 FQNYALFPH 86
Score = 28.4 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+E NVS Y A L +S + G+ LL SG
Sbjct: 1 IELENVSKFYGGFVA-LDGVSLDIKEGEFFTLLGPSG 36
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 71.6 bits (176), Expect = 3e-14
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
LSGG++QRVA+AR L P+++LLDE ALD K + ++ L R R TT+ V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL-RKLHDRLGVTTVFVTH 196
Query: 119 RLS-TIIHADEILVMHAGEIVERGS 142
+ AD ++V++ G I + G
Sbjct: 197 DQEEALELADRVVVLNQGRIEQVGP 221
Score = 45.8 bits (109), Expect = 9e-06
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGV 196
++ G L V+LL G SGAGKST++R++ ++G I ++ + + VS ++R +G
Sbjct: 25 IKSGEL-VALL--GPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81
Query: 197 VPQDTVLF 204
V Q LF
Sbjct: 82 VFQHYALF 89
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 69.7 bits (171), Expect = 3e-14
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
S G +Q+VAIAR L+ P ++LLDE T+ LD R ++ + ++ A I+ + H +
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196
Query: 121 STIIH-ADEILVMHAGEIVERG 141
+ D ++V+H G +V G
Sbjct: 197 QEVERLCDRVVVLHRGRVVYEG 218
Score = 30.0 bits (68), Expect = 0.94
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLF 204
G +GAGK+T +R+L + ++G +D V + A R+ +G V T L+
Sbjct: 38 GPNGAGKTTTLRMLAGLLEPDAGFATVD--GFDVVKEPAEARRRLGFVSDSTGLY 90
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 71.9 bits (177), Expect = 3e-14
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
SGG++QR+AIAR L+ P+++LLDE TSALD + + L + + + ++H L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 121 STI-IHADEILVMHAGEIVERGS 142
+ + ++VM G+IVE+G
Sbjct: 488 AVVRALCHRVIVMRDGKIVEQGP 510
Score = 57.3 bits (139), Expect = 3e-09
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTI 114
LSGG++QRV IA L P +++ DE T+ALD + + +Q+ L +
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-----MAIL 212
Query: 115 IVAHRLSTIIH-ADEILVMHAGEIVERGS 142
+ H L + AD + VM GEIVE G+
Sbjct: 213 FITHDLGIVRKFADRVYVMQHGEIVETGT 241
Score = 35.7 bits (83), Expect = 0.022
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQD 200
VG+SG+GKST+ L R G+I D Q+I +S+ LR+ + VV QD
Sbjct: 319 VGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371
Score = 29.6 bits (67), Expect = 2.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 33 RNVSFSYTPE---RAILKNISFTVPAGKTLALL--SGGEK 67
RN+S ++ E +K ISF + AG+TLAL+ SG K
Sbjct: 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGK 49
Score = 28.8 bits (65), Expect = 3.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 150 VGQSGAGKS----TIIRLLFRFYDVE-SGDIFIDNQNIKTVSQASLRQAIG 195
VG+SG+GKS +I+ LL SG I D +++ S+ LR G
Sbjct: 42 VGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRG 92
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 69.9 bits (172), Expect = 4e-14
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG +QRVAIAR L P+++LLDE ALD T +Q L R+ +T ++V H
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
Query: 120 LSTIIH-ADEILVMHAG 135
+ ++ AD ++V+
Sbjct: 191 VDEAVYLADRVVVLSNR 207
Score = 47.6 bits (114), Expect = 2e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE+G FV++ +G SG GKST++RL+ SG++ +D + + IG V
Sbjct: 26 VEKGE-FVAI--LGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT-----GPGPDIGYV 77
Query: 198 PQDTVLF 204
Q+ L
Sbjct: 78 FQEDALL 84
Score = 34.1 bits (79), Expect = 0.054
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
+E VS S+ +L++I+ +V G+ +A+L SG K TLL+
Sbjct: 3 LLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKS------TLLRL 48
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E VS S+ +L++I+ +V G+ +A
Sbjct: 3 LLEIEGVSKSF-GGVEVLEDINLSVEKGEFVA 33
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 70.0 bits (172), Expect = 4e-14
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L++ P+I+L DE ++LD ++ + + L + T I+ H+
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
+ +AD I+ + AG IV G
Sbjct: 208 VDLAKKYADRIIGLKAGRIVFDGP 231
Score = 47.2 bits (113), Expect = 2e-06
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L ++ GE V++ +G SGAGKST++R L D SG+I + I +
Sbjct: 25 LEINQGE-------MVAI--IGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 190 LR----------QAIGVVPQDTVLFN 205
LR Q +VP+ +VL N
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLEN 101
Score = 30.7 bits (70), Expect = 0.66
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
+E +N+S +Y LK+++ + G+ +A++ SG K TLL++
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKS------TLLRS 49
Score = 28.0 bits (63), Expect = 4.8
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAG 273
+E +N+S +Y LK+++ + G
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQG 30
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 69.3 bits (170), Expect = 4e-14
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 6/81 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
LSGG+KQRVAIAR L+ P++VL DE T+ALD+K+ R++ + ++ + T +IV H
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
Query: 119 -RLSTIIHADEILVMHAGEIV 138
R+ + AD I+ M G+++
Sbjct: 202 NRILDV--ADRIVHMEDGKLL 220
Score = 31.5 bits (72), Expect = 0.33
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L ++ GEIV + G SG+GK+T++ L+ V+ G + + Q + S+
Sbjct: 26 LEINPGEIV---------ILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE 76
Query: 190 L---RQAIGVVPQ 199
L R+ IG + Q
Sbjct: 77 LVQLRRNIGYIFQ 89
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 68.8 bits (169), Expect = 5e-14
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT-ERNIQSALNRVCASRTTIIVAHRL 120
LSGGE+QRVA+AR +LK P ++L DE T +LD K + + L +T IIV H
Sbjct: 135 LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194
Query: 121 STIIHADEIL 130
AD ++
Sbjct: 195 EVAKQADRVI 204
Score = 39.9 bits (94), Expect = 5e-04
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQAS--LRQAIGVVPQD----- 200
+G+SG+GKST++ ++ +SG ++++ Q + +AS R+ +G + Q+
Sbjct: 30 IGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIE 89
Query: 201 --TVLFNNSI--KAIQKNFVDMENM 221
TV N + K + + +
Sbjct: 90 NETVEENLDLGLKYKKLSKKEKREK 114
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 71.2 bits (175), Expect = 6e-14
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH 118
A LSGG++QR+A+AR L P +V+LDE S LD++ E + +A+ A T +++AH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 119 RLSTIIHADEILVMHAGEI 137
R S + D+ILV+ G I
Sbjct: 531 RPSALASVDKILVLQDGRI 549
Score = 46.1 bits (110), Expect = 1e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G SG+GKST+ RLL + SG + +D +++ + L + IG +PQD LF+ +I
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427
Query: 210 A 210
Sbjct: 428 E 428
Score = 30.3 bits (69), Expect = 1.0
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
+ + L + + +P AP QGA+ ++ + ++ ILK ISF + AG+ L
Sbjct: 312 LNELLAELPAAAERMPLP-AP-----QGALSVERLTAAPPGQKKPILKGISFALQAGEAL 365
Query: 60 ALL--SGGEKQRVAIARTLL 77
++ SG K +AR L+
Sbjct: 366 GIIGPSGSGKS--TLARLLV 383
Score = 30.3 bits (69), Expect = 1.0
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 192 QAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRN 251
AI Q F + ++ ++ + + L + + +P AP QGA+
Sbjct: 294 LAIANWKQ----FVAARQSYKR----LNELLAELPAAAERMPLP-AP-----QGALSVER 339
Query: 252 VSFSYTP-ERAILKNISFTVPAGKTLA 277
++ + ++ ILK ISF + AG+ L
Sbjct: 340 LTAAPPGQKKPILKGISFALQAGEALG 366
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 70.4 bits (173), Expect = 6e-14
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII-VAHR 119
LSGGEKQRVAI R LL AP+++L+DE ++LD +R I L R+ I+ V+H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
L ++ AD ++V+ G++ G L
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPL 213
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI----KTVSQASLRQAIGVVPQDTVLF 204
G SG+GK+++I ++ + G I ++ + + K + ++ IG V QD LF
Sbjct: 31 GPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 70.5 bits (173), Expect = 7e-14
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
LSGGEKQRVAI R LL +P+++L+DE +ALD + I L R+ A + V+H
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
L ++ AD ++V+ G + G +
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAGPI 216
Score = 31.6 bits (72), Expect = 0.37
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQDTVLF 204
G+SG+GK+T+IRL+ + G+I ++ + + + ++ IG V Q+ LF
Sbjct: 30 GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLF 87
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 68.9 bits (169), Expect = 9e-14
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVAIAR L + P ++L DE ++LD KT + + L R+ T II H+
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
+ +AD I+ + AGEIV G+
Sbjct: 206 VDLAKKYADRIVGLKAGEIVFDGA 229
Score = 49.2 bits (118), Expect = 5e-07
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD 200
FV+++ G SGAGKST++R + R + SG I ++ +I + LR+ IG++ Q
Sbjct: 30 FVAII--GPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87
Query: 201 TVLFNNS 207
L
Sbjct: 88 YNLIERL 94
Score = 27.3 bits (61), Expect = 9.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLAL--LSGGEKQRVAIARTLLK 78
+E N+S Y + LKNI+ + G+ +A+ SG K TLL+
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKS------TLLR 46
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 68.8 bits (168), Expect = 1e-13
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 42 ERAILKNISFTVPAGKTLALLSGGE------KQRVAIARTLLKAPQIVLLDEATSALDTK 95
E A LKN+ ++P G + GGE +Q +AR ++ I+++DEAT+++D
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 96 TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVE 139
TE +Q + A RT + +AHR+STI+ AD +LV+ G +VE
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234
Score = 44.9 bits (106), Expect = 1e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
G++G+GKS++ FR D+ G I ID +I + +LR + ++ QD +LF+ SI+
Sbjct: 54 GRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIR 112
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 68.3 bits (167), Expect = 1e-13
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
LSGG++QRVA+AR L PQ++LLDE ALD K + ++S L ++ TT+ V H
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ AD I+VM G+I + GS
Sbjct: 191 QEEAMEVADRIVVMSNGKIEQIGS 214
Score = 38.2 bits (89), Expect = 0.002
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR-QAIGV 196
V GSL V+LL G SG+GKST++R++ +SG I ++ Q+ ++ R + IG
Sbjct: 23 VPTGSL-VALL--GPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD---ATRVHARDRKIGF 76
Query: 197 VPQDTVLF 204
V Q LF
Sbjct: 77 VFQHYALF 84
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 68.8 bits (169), Expect = 2e-13
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L++ P++ LLDE S LD K ++S + ++ TTI V H
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193
Query: 120 L---STIIHADEILVMHAGEIVERGS 142
T+ AD I+VM+ G I + G+
Sbjct: 194 QVEAMTL--ADRIVVMNDGRIQQVGT 217
Score = 44.6 bits (106), Expect = 3e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E G FV L +G SG GKST++R++ + SG+I ID +++ + R I +V
Sbjct: 26 IEDGE-FVVL--LGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEKRG-IAMV 80
Query: 198 PQDTVLFNN 206
Q+ L+ +
Sbjct: 81 FQNYALYPH 89
Score = 30.7 bits (70), Expect = 0.78
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLD 86
+E +NV S+ +LK+++ + G+ + LL SG K TLL+ I L+
Sbjct: 3 ELELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKS------TLLRM--IAGLE 53
Query: 87 EATS 90
E TS
Sbjct: 54 EPTS 57
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 67.7 bits (166), Expect = 2e-13
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++LLDE TSALD I+ + + T +IV H +
Sbjct: 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQ 204
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
+D + GE+VE G
Sbjct: 205 QAARISDRTAFFYDGELVEYGP 226
Score = 41.9 bits (99), Expect = 1e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST++R L R D V G + D Q+I K + LR+ +G+V Q
Sbjct: 33 IGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92
Query: 203 LFNNSI 208
F SI
Sbjct: 93 PFPMSI 98
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 67.5 bits (165), Expect = 3e-13
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 5 FDLLQETCDVIDIPQAPMLC--VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
F+L + ++ +AP+L +A+ E R + +L + A A L
Sbjct: 96 FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME--------LLDMVGLADKADHMPAQL 147
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
SGG++QRVAIAR L P+++L DE TSALD + + + + R+ + T ++V H +
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207
Query: 121 STIIH--ADEILVMHAGEIVERG 141
AD + G IVE+G
Sbjct: 208 G-FAREFADRVCFFDKGRIVEQG 229
Score = 30.6 bits (69), Expect = 0.77
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-------TVSQAS------LRQAIGV 196
+G SG+GKSTI+R+L ++ G I ++ + + + A +R IG+
Sbjct: 32 IGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91
Query: 197 VPQDTVLF 204
V Q LF
Sbjct: 92 VFQSFNLF 99
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 67.7 bits (166), Expect = 3e-13
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+KQRVAIA L P I++LDEATS LD + R + + ++ + T + + H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200
Query: 120 LSTIIHADEILVMHAGEIVERG 141
L AD ++VM+ GEI+E G
Sbjct: 201 LDEAAQADRVIVMNKGEILEEG 222
Score = 35.8 bits (83), Expect = 0.018
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQASLRQAIGVVPQD 200
VG +G+GKST+ +LL E+G I + + +TV +R+ +G+V Q+
Sbjct: 39 VGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD--VRRQVGMVFQN 89
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 67.1 bits (164), Expect = 3e-13
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
S G KQ+VAIAR L+ P I++LDE TS LD +T R + ++ R I +H +
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193
Query: 121 STIIH-ADEILVMHAGEIVERGSL 143
+ D ++V+H GE+V GS+
Sbjct: 194 QEVEALCDRVIVLHKGEVVLEGSI 217
Score = 37.8 bits (88), Expect = 0.003
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGV 196
E G + L G++GAGK+T++R++ +SG + ID + TV S +R+ IGV
Sbjct: 25 AEEGEITGLL---GENGAGKTTLLRMIATLLIPDSGKVTIDGVD--TVRDPSFVRRKIGV 79
Query: 197 VPQDTVLF 204
+ + L+
Sbjct: 80 LFGERGLY 87
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 68.8 bits (168), Expect = 4e-13
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G++Q V +AR LL+ +I++LDEAT+A+D +T+ IQS + T + +AHRL+
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI+ ++V+ GE+ E G+
Sbjct: 1482 TIMDYTRVIVLDKGEVAEFGA 1502
Score = 58.0 bits (140), Expect = 2e-09
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
LSGG+KQRV++AR + I L D+ SA+D ++I + V ++T I+V H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQ 149
+S + D I+VM G+I E GS + LLQ
Sbjct: 821 GISYLPQVDVIIVMSGGKISEMGS-YQELLQ 850
Score = 55.3 bits (133), Expect = 1e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG++GAGKS++ LFR + G+I ID NI + LR I ++PQD VLF+ S++
Sbjct: 1318 VGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377
Score = 27.6 bits (61), Expect = 10.0
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 28 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL 62
G VEFRN Y + +L++I+ T+ G+ + ++
Sbjct: 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIV 1318
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 66.1 bits (162), Expect = 5e-13
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVA+ R +++ P++ L+DE S LD K +++ L R+ TTI V H
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190
Query: 119 RLSTIIHADEILVMHAGEIVERG 141
++ + AD I VM+ G+I + G
Sbjct: 191 QVEAMTMADRIAVMNDGQIQQIG 213
Score = 36.8 bits (86), Expect = 0.006
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178
+ G V L G SG GK+T +R++ + SG I+I
Sbjct: 23 IADGEFVVLL---GPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 68.2 bits (167), Expect = 5e-13
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LSGGE+QR+A+AR LL I+LLDE T LD +T + L + RT +++ H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
Query: 120 L 120
L
Sbjct: 530 L 530
Score = 52.4 bits (126), Expect = 1e-07
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
+G SG+GKST++ L D G++ +D + ++ Q +R+ + V QD LF+ ++
Sbjct: 367 LGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTV 425
Score = 32.7 bits (75), Expect = 0.20
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 18 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIART 75
P A + + + +E R++S Y +L +S +P G+ +A+L SG K + T
Sbjct: 323 PAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKS--TLLAT 380
Query: 76 LLKA-----PQIVLLDEATSALDTKTERNIQSALN 105
L ++ L S+LD R S
Sbjct: 381 LAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCA 415
Score = 29.3 bits (66), Expect = 2.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 235 PQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
P A + + + +E R++S Y +L +S +P G+ +A
Sbjct: 323 PAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVA 365
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 66.6 bits (163), Expect = 5e-13
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L++ I+LLDE SALD + + ++++C R T ++V H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
AD ++ + G I +GS
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGST 214
Score = 32.3 bits (74), Expect = 0.17
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 181
+G SGAGKST++ L+ F SG+I I+ +
Sbjct: 31 LGPSGAGKSTLLNLIAGFETPASGEILINGVD 62
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 66.1 bits (162), Expect = 5e-13
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTT 113
A K + LSGG ++RV IA+ L+ P I+++DE T+ LD + ER ++ L+ + R
Sbjct: 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFRNLLSELGEDRIV 182
Query: 114 IIVAHRLSTI-IHADEILVMHAGEIVERG 141
I+ H + + +++ V++ G++V G
Sbjct: 183 ILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +GAGK+T++R+L SG I ID Q++ Q LR+ IG +PQ+
Sbjct: 31 LGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLPQE 80
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 66.6 bits (163), Expect = 6e-13
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
LSGG++QRVA+AR L P+++LLDE ALD K + ++ L R+ TT+ V H
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ AD ++VM+ G I + G+
Sbjct: 197 QEEALEVADRVVVMNKGRIEQVGT 220
Score = 37.7 bits (88), Expect = 0.004
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ-AIGV 196
+ G L V+LL G SG+GK+T++RL+ +SG I ++ + +++ +G
Sbjct: 25 IPSGEL-VALL--GPSGSGKTTLLRLIAGLERPDSGTILFGGED---ATDVPVQERNVGF 78
Query: 197 VPQDTVLF 204
V Q LF
Sbjct: 79 VFQHYALF 86
Score = 28.5 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK-------- 78
++E RNVS + A L ++S +P+G+ +ALL SG K TLL+
Sbjct: 2 SIEVRNVSKRFGDFVA-LDDVSLDIPSGELVALLGPSGSGKT------TLLRLIAGLERP 54
Query: 79 -APQIVLLDEATSALDTKTERNI 100
+ I+ E + + + ERN+
Sbjct: 55 DSGTILFGGEDATDVPVQ-ERNV 76
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 65.9 bits (161), Expect = 8e-13
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
K +A LSGGEKQR+++ R L P+++LLDE TSALD + N+ ++R + +
Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVL 192
Query: 116 -VAHRLSTIIHADEILVM--HAGEIVE 139
V H I HAD+++ + HAGE+ E
Sbjct: 193 WVTHDKDEINHADKVITLQPHAGEMQE 219
Score = 40.1 bits (94), Expect = 6e-04
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 207
L G SG GKST+++++ SG + + ++I T+ RQ + Q LF ++
Sbjct: 37 LITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96
Query: 208 I 208
+
Sbjct: 97 V 97
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 65.6 bits (161), Expect = 8e-13
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT-IIVAHRL 120
LSGG++QRVAIAR L P+++L DE TSALD + + + + T ++V H +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195
Query: 121 STIIH-ADEILVMHAGEI 137
AD ++ M G I
Sbjct: 196 GFAREVADRVIFMDDGRI 213
Score = 47.1 bits (113), Expect = 2e-06
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA- 188
L + GE+V + +G SG+GKST++R + + +SG I ID + +
Sbjct: 21 LTVKKGEVV---------VIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 189 -SLRQAIGVVPQDTVLFNN 206
LRQ +G+V Q LF +
Sbjct: 72 NELRQKVGMVFQQFNLFPH 90
Score = 27.1 bits (61), Expect = 7.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
+E +N+ S+ + +LK I TV G+ + ++ SG K TLL+ I LL+E
Sbjct: 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKS------TLLRC--INLLEE 51
Query: 88 ATS 90
S
Sbjct: 52 PDS 54
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 66.0 bits (162), Expect = 9e-13
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD----TKTERNIQSALNRVCASRTTIIVA 117
LSGG K+RVA+AR L P+++L DE T+ LD + I+S L + T+I+V
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS-LKKELGL-TSIMVT 194
Query: 118 HRLSTIIH-ADEILVMHAGEIVERGS 142
H L T AD I V++ G+IV G+
Sbjct: 195 HDLDTAFAIADRIAVLYDGKIVAEGT 220
Score = 49.8 bits (120), Expect = 3e-07
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
+ L + GEI L +G SG+GKST++RL+ +SG++ ID +
Sbjct: 12 GRTVLKGVDLDVRRGEI---------LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
Query: 181 NIKTVSQA---SLRQAIGVVPQDTVLFN 205
+I +S+A LR+ +G++ Q LF+
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFD 90
Score = 42.5 bits (101), Expect = 9e-05
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLDE 87
+E R ++ S+ R +LK + V G+ LA++ SG K TLL+ IV L
Sbjct: 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKS------TLLR--LIVGLLR 51
Query: 88 ATS 90
S
Sbjct: 52 PDS 54
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E R ++ S+ R +LK + V G+ LA
Sbjct: 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILA 30
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 65.8 bits (161), Expect = 9e-13
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 15/102 (14%)
Query: 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 105
L++++ T G + +SGGE++RV+IA LL P++++LDE TS LD+ T N+ S L+
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 106 RVCASRTTIIVAHRLSTIIHA---------DEILVMHAGEIV 138
++ +I+ IH D IL++ +GEIV
Sbjct: 188 QLARRNRIVILT------IHQPRSDLFRLFDRILLLSSGEIV 223
Score = 28.8 bits (65), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 42 ERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
IL ++S V +G+ +A+L SG K TLL A
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGK------TTLLDA 52
Score = 27.6 bits (62), Expect = 6.7
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 151 GQSGAGKSTIIRLL---FRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
G SG+GK+T++ + SG I + Q K ++ + V QD +L
Sbjct: 40 GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDIL 92
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 66.5 bits (163), Expect = 1e-12
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTIIVA 117
LSGG++QRVAIAR ++ P+++LLDE+ SALD K + +Q+ L + R T + V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL--QRKLGITFVFVT 202
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
H + + +D I+VM G I + G+
Sbjct: 203 HDQEEALTMSDRIVVMRDGRIEQDGT 228
Score = 41.5 bits (98), Expect = 3e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
F++LL G SG GK+T++RL+ F +SG I +D Q+I V A R + V Q L
Sbjct: 42 FLTLL--GPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRH-VNTVFQSYAL 97
Query: 204 F 204
F
Sbjct: 98 F 98
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 65.6 bits (161), Expect = 1e-12
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 62 LSGGEKQRVAIARTLL------KAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TT 113
LSGGE+QRV +AR L P+ +LLDE TSALD + ++ ++ R
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 114 IIVAHRLS-TIIHADEILVMHAGEIVERGS 142
I+V H L+ +AD I+++H G +V G+
Sbjct: 195 IVVLHDLNLAARYADRIVLLHQGRLVADGT 224
Score = 38.6 bits (91), Expect = 0.002
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
+G +GAGKST++R L +SG++ ++ + + S A L + V+PQ + L
Sbjct: 34 LGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87
Score = 29.7 bits (68), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 16/61 (26%)
Query: 21 PMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
ML RN+S R +L ++S T+ G+ +A+L +G K TLL+
Sbjct: 1 AMLEA-------RNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKS------TLLR 46
Query: 79 A 79
A
Sbjct: 47 A 47
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 66.1 bits (161), Expect = 2e-12
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 5/86 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
LSGG+KQRVAIAR L P+++L DEATSALD T ++I L NR T +++ H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199
Query: 119 RLSTIIH-ADEILVMHAGEIVERGSL 143
+ + D + V+ GE++E+G++
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTV 225
Score = 38.7 bits (90), Expect = 0.002
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ 199
+G SGAGKST+IR + SG + +D Q++ T+S + L R+ IG++ Q
Sbjct: 37 IGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 66.4 bits (163), Expect = 2e-12
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
R +L + + + LS ++Q V IAR L ++++LDE T+AL K +
Sbjct: 127 RELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 103 ALNRVCASRTTII-VAHRLSTII-HADEILVMHAGEIV 138
+ R+ A II ++HRL + AD I V+ G +V
Sbjct: 187 LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 54.8 bits (133), Expect = 1e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG +Q+V +AR L P++++LDE T +D + I + + A I++ +S
Sbjct: 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM---IS 458
Query: 122 T----IIH-ADEILVMHAGEIV 138
+ ++ +D ILVM G IV
Sbjct: 459 SELPELLGLSDRILVMREGRIV 480
Score = 47.1 bits (113), Expect = 5e-06
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 26/98 (26%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L + GE+ +L +G++GAGKST++++L Y +SG+I ID K V+ +S
Sbjct: 29 LTVRPGEVH-------AL--LGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSS 76
Query: 190 LRQA----IGVVPQDTVLFNN-SIKAIQKNFVDMENMF 222
R A I V Q+ L N S+ EN+F
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSV---------AENIF 105
Score = 32.9 bits (76), Expect = 0.20
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 133 HAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLR 191
AGEI+ G L+ GAG++ + R LF SG+I +D + ++ S + +++
Sbjct: 283 RAGEIL--G--IAGLV-----GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 192 QAIGVVPQD 200
I VP+D
Sbjct: 334 AGIAYVPED 342
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGE 66
+E R +S S+ +A L +S TV G+ ALL GE
Sbjct: 9 LELRGISKSFGGVKA-LDGVSLTVRPGEVHALL--GE 42
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 65.6 bits (160), Expect = 2e-12
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L+ P+I+LLDE SALD K +Q L + T + V H
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
Query: 120 LS-TIIHADEILVMHAGEIVERGS 142
+ +D I +M G+I + G+
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGT 184
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G SG GK+T++RLL F +SG I +D +++ V + I +V Q LF
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV--PPHLRHINMVFQSYALF 54
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 65.8 bits (161), Expect = 2e-12
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG++QRV +AR L P I+L+DE ALD T + +Q + + +T + V H
Sbjct: 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ + AD I VM AGEIV+ +
Sbjct: 196 IDEALKLADRIAVMDAGEIVQYDT 219
Score = 56.2 bits (136), Expect = 4e-09
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E G V +G SG+GK+T ++++ R + SG+I ID ++I + LR+ IG V
Sbjct: 24 IEEGEFLVL---IGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80
Query: 198 PQDTVLFNN 206
Q LF +
Sbjct: 81 IQQIGLFPH 89
Score = 32.7 bits (75), Expect = 0.19
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
+EF NVS Y + + +++ T+ G+ L L+ SG K T LK
Sbjct: 2 IEFENVSKRYGN-KKAVDDVNLTIEEGEFLVLIGPSGSGKT------TTLK 45
Score = 29.6 bits (67), Expect = 1.5
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+EF NVS Y + + +++ T+ G
Sbjct: 2 IEFENVSKRYGN-KKAVDDVNLTIEEG 27
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 65.0 bits (159), Expect = 2e-12
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 28/134 (20%)
Query: 36 SFSYTPERAILKNISFT-----VP-------AGKTLAL-------------LSGGEKQRV 70
SF+ P R +L+N++F VP A + L L LSGG +QRV
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169
Query: 71 AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHRLSTIIH-AD 127
+AR L P I+L+DEA SALD R +Q L R+ A +T + + H L + D
Sbjct: 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229
Query: 128 EILVMHAGEIVERG 141
I +M G +V+ G
Sbjct: 230 RIAIMKDGRLVQVG 243
Score = 56.5 bits (137), Expect = 2e-09
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 14/79 (17%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
V G +FV + G SG+GKST++R + R + SG + ID Q+I +S+ LR
Sbjct: 47 VREGEIFVIM---GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 192 -----QAIGVVPQDTVLFN 205
Q+ ++P TVL N
Sbjct: 104 ISMVFQSFALLPHRTVLEN 122
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 65.1 bits (159), Expect = 2e-12
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTERNIQSALNRVC 108
AG+ LSGGE+QRV +AR L + V LDE TSALD + + ++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 109 ASRTTII-VAHRLS-TIIHADEILVMHAGEIVERGS 142
++ V H L+ +AD I+++H G ++ GS
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
+G +GAGKST+++ L +SG++ ++ + + L + V+PQ++ L
Sbjct: 33 LGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSL 86
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 64.8 bits (158), Expect = 3e-12
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 25 VAQGAVEFRNVSFSYTPE-----RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKA 79
VA G + R++ +P L + A + ++ LSGGE+QRV +AR L +
Sbjct: 96 VALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155
Query: 80 PQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRLS-TIIHADEILVMHAGEI 137
P+++LLDE T+ LD + + + + + A+ T++ A H L+ + D ++V+ G +
Sbjct: 156 PKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215
Query: 138 VERG 141
V G
Sbjct: 216 VAAG 219
Score = 29.4 bits (66), Expect = 1.6
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +G+GKST++RLL ++G + + ++ +S+ + + + +V QD
Sbjct: 33 LGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQD 83
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 64.2 bits (157), Expect = 3e-12
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
+L + A + L+GG ++RV IAR LL P ++LLDE T LD + I +
Sbjct: 114 AELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITA 173
Query: 103 ALNRVCASRTTIIV--AHRLSTIIHADEILVMHAGEIVERGS 142
+ + + ++ H + I D ++V+H G ++ G+
Sbjct: 174 HVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGA 215
Score = 45.7 bits (109), Expect = 8e-06
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V G FV+LL G +GAGKST+ LL R Y + G I + +++ +A+L + +GVV
Sbjct: 24 VRPGR-FVALL--GPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR-LGVV 79
Query: 198 PQ 199
Q
Sbjct: 80 FQ 81
Score = 33.4 bits (77), Expect = 0.076
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
A+E +SF Y RA L ++SFTV G+ +ALL
Sbjct: 1 ALEVAGLSFRYGARRA-LDDVSFTVRPGRFVALL 33
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAG 273
A+E +SF Y RA L ++SFTV G
Sbjct: 1 ALEVAGLSFRYGARRA-LDDVSFTVRPG 27
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 64.8 bits (158), Expect = 4e-12
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
A LSGG+KQRVAIA L P+I++LDE+TS LD + I + ++ T I +
Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201
Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
H + AD++LV+ G+++ +GS
Sbjct: 202 HDIDEANMADQVLVLDDGKLLAQGS 226
Score = 35.2 bits (81), Expect = 0.028
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 29 AVEFRNVSFSYT-PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTL 76
VEF++VSF+Y ++ L +ISF++P G AL+ + I++ +
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLI 53
Score = 33.6 bits (77), Expect = 0.085
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 246 AVEFRNVSFSYT-PERAILKNISFTVPAG 273
VEF++VSF+Y ++ L +ISF++P G
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRG 33
Score = 27.1 bits (60), Expect = 9.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRL---LFRFYDVESGDIFIDNQNIKTVSQASLRQAI 194
+ RGS + +L +G +G+GKSTI +L L D + I +D + + +R+ +
Sbjct: 30 IPRGS-WTAL--IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKV 86
Query: 195 GVVPQD 200
G+V Q+
Sbjct: 87 GIVFQN 92
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 65.1 bits (159), Expect = 4e-12
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 13/89 (14%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
LSGG++QRVA+AR L +P ++LLDE SALD + TE R +Q L TTI
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-----VTTI 189
Query: 115 IVAH-RLSTIIHADEILVMHAGEIVERGS 142
+V H + + AD I+VM+ G I + G+
Sbjct: 190 MVTHDQEEALSMADRIVVMNHGVIEQVGT 218
Score = 34.6 bits (80), Expect = 0.048
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
FV LL G SG GK+T++R++ +G I+ ++I + ++ G+V Q L
Sbjct: 32 FVCLL--GPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYAL 87
Query: 204 FNN 206
F N
Sbjct: 88 FPN 90
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 63.7 bits (155), Expect = 4e-12
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTI 114
K + LSGGEKQR+A+ R L P+I+LLDE TSALD +RNI+ ++R + +
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Query: 115 IVAH-RLSTIIHADEILVMHAGEIVER 140
+ H + I HAD+++ + G E
Sbjct: 189 WITHDKDQAIRHADKVITLQPGHAGEM 215
Score = 41.8 bits (98), Expect = 1e-04
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 126 ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
D ++ + V G + G SG GKST+++++ SG + + +++ T+
Sbjct: 14 GDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 186 SQASLRQAIGVVPQDTVLFNNSI 208
+ RQ + Q LF +++
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTV 93
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 64.0 bits (156), Expect = 4e-12
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRVCASRTTIIVAH 118
LSGGE+QRVA+AR P ++ DE T LD T I ALNR + T ++V H
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT-TLVLVTH 205
Query: 119 RLSTIIHADEILVMHAGEIVER 140
D L + +G +VE
Sbjct: 206 DPQLAARCDRQLRLRSGRLVED 227
Score = 37.4 bits (87), Expect = 0.004
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 110 SRTTIIVAHRLSTII--HADEILVMHAGEI-VERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
II H LS + E+ ++ E+ V+RG ++ VG SG+GKST++ +L
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAG 58
Query: 167 FYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDTVLFNN 206
D SG++ + Q + + + A+LR + +G V Q L N
Sbjct: 59 LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 64.2 bits (157), Expect = 4e-12
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 120
LSGG+KQRV +AR L + P ++LLDE + +D ++ I L +T ++V H L
Sbjct: 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199
Query: 121 STII-HADEILVMH 133
++ + D ++ ++
Sbjct: 200 GLVMAYFDRVICLN 213
Score = 41.4 bits (98), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE+G +L +G +GAGKST+++ + SG+I I + ++ + R IG V
Sbjct: 27 VEKGE-ITAL--IGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR---KRRKRLRIGYV 80
Query: 198 PQ 199
PQ
Sbjct: 81 PQ 82
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
+E N++ SY L++IS +V G+ AL+ +G K TLLKA
Sbjct: 4 MIEVENLTVSYGNRPV-LEDISLSVEKGEITALIGPNGAGKS------TLLKA 49
Score = 35.7 bits (83), Expect = 0.016
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E N++ SY L++IS +V G+ A
Sbjct: 4 MIEVENLTVSYGNRPV-LEDISLSVEKGEITA 34
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 64.0 bits (156), Expect = 6e-12
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
LLSGG+KQRVAIA L P+ ++ DE T+ LD R + + + + T I++ H
Sbjct: 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
+ + AD I+VM +G++V G+
Sbjct: 204 YMEEAVEADRIIVMDSGKVVMEGT 227
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 64.5 bits (157), Expect = 6e-12
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG +QRV +AR L P I+L+DEA SALD ++Q L ++ A+ +T + + H
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L I D I++M AGEIV+ G+
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGT 213
Score = 49.5 bits (118), Expect = 7e-07
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
+ +G +FV + G SG+GKST +R+L R + +G IFID +NI S LR
Sbjct: 16 IAKGEIFVIM---GLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 192 -----QAIGVVPQDTVLFNNS 207
Q + P T+L N S
Sbjct: 73 IGMVFQQFALFPHMTILQNTS 93
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 62.9 bits (153), Expect = 7e-12
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE+QRVA+AR L++ ++LLDE +ALD + + + A T ++V H+
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
A ++ + G I +G
Sbjct: 189 PEDAKRLAQRVVFLDNGRIAAQG 211
Score = 33.6 bits (77), Expect = 0.074
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
VG SG+GKST++ L+ F +SG + I+ ++ A + + ++ Q+ LF
Sbjct: 30 VGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRPVSMLFQENNLF 82
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 63.0 bits (154), Expect = 7e-12
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE+QRVAIAR ++ +P ++L DE T LD I L R+ TT+IVA H L
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197
Query: 121 STI 123
S +
Sbjct: 198 SLV 200
Score = 45.7 bits (109), Expect = 6e-06
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAI 194
+ +G F+ L G SGAGK+T+++LL+ G + I +++ + LR+ I
Sbjct: 25 IRKGE-FLFL--TGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81
Query: 195 GVVPQD 200
GVV QD
Sbjct: 82 GVVFQD 87
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
+EF NVS +Y A L ++S + G+ L L SG K TLLK
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKT------TLLK 46
Score = 37.6 bits (88), Expect = 0.003
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+EF NVS +Y A L ++S + G
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKG 28
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 63.6 bits (155), Expect = 7e-12
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG++QRVAIAR L P+++L DE TSALD + + + + ++ RT +IV H +
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
Query: 121 STIIH-ADEILVMHAGEIVERG 141
S AD + M G IVE+G
Sbjct: 205 SFARDVADRAIFMDQGRIVEQG 226
Score = 29.7 bits (67), Expect = 1.4
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFID-----NQNIKTVSQASLRQAIGVVPQ 199
+G SG+GK+T++R + E+ GDI ID +Q + Q LRQ +G V Q
Sbjct: 35 IGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ--LRQHVGFVFQ 92
Query: 200 DTVLF 204
+ LF
Sbjct: 93 NFNLF 97
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 62.8 bits (153), Expect = 8e-12
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI---QSALNRVCASRTT-IIVA 117
LSGGE+QRVAIAR L+ P +VL DE T LD + I LNR T+ ++V
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR--ELNTSFLVVT 199
Query: 118 HRLSTIIHADEILVMHAGEIVE 139
H L D +L M G++
Sbjct: 200 HDLELAKKLDRVLEMKDGQLFN 221
Score = 36.6 bits (85), Expect = 0.008
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQ 199
VG SG+GKST++ LL + SG++ + Q++ +S A LR + +G + Q
Sbjct: 37 VGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQ 90
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 63.3 bits (155), Expect = 9e-12
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
LSGG++QR+ IAR L P+++L+DE TSALD + I+ + + T +IV H
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209
Query: 119 ---RLSTIIHADEILVMHAGEIVERGS 142
R+S D + GE+VE G
Sbjct: 210 QAARVS-----DYTAFFYLGELVEFGP 231
Score = 44.8 bits (107), Expect = 1e-05
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 151 GQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTVL 203
G SG GKST++R L R D+ G++ +D +NI V LR+ +G+V Q
Sbjct: 40 GPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99
Query: 204 FNNSI 208
F SI
Sbjct: 100 FPMSI 104
Score = 32.1 bits (74), Expect = 0.26
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 25 VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+ A+E R+++ Y + A LK+I+ +P K AL+ SG
Sbjct: 3 MKIPAIEVRDLNLYYGDKHA-LKDINLDIPKNKVTALIGPSG 43
Score = 29.8 bits (68), Expect = 1.4
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 242 VAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+ A+E R+++ Y + A LK+I+ +P K A
Sbjct: 3 MKIPAIEVRDLNLYYGDKHA-LKDINLDIPKNKVTA 37
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 62.8 bits (154), Expect = 9e-12
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGGE+Q +AIAR L+ P+++LLDE + L K I A+ + TI+ V
Sbjct: 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192
Query: 121 STII-HADEILVMHAGEIVERGS 142
+ AD V+ G +V G+
Sbjct: 193 RFALEIADRAYVLERGRVVLEGT 215
Score = 38.2 bits (90), Expect = 0.002
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-KTVSQASLRQAIGV 196
V G V+LL G++GAGK+T+++ + SG I D ++I R IG
Sbjct: 23 VPEGE-IVALL--GRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79
Query: 197 VPQDTVLF 204
VP+ +F
Sbjct: 80 VPEGRRIF 87
Score = 27.8 bits (63), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 45 ILKNISFTVPAGKTLALL 62
IL +S TVP G+ +ALL
Sbjct: 15 ILFGVSLTVPEGEIVALL 32
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 62.4 bits (152), Expect = 1e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 17/109 (15%)
Query: 32 FRNVSFS----YTPERAILKNISFTVP----AGKTLAL---LSGGEKQRVAIARTLLKAP 80
+ NV+F+ P R I K + + + K AL LSGGE+QRVAIAR ++ +P
Sbjct: 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155
Query: 81 QIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEI 129
I++ DE T LD T I + L ++ + TT++VA HA E+
Sbjct: 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVA------THAKEL 198
Score = 45.9 bits (109), Expect = 6e-06
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI---KTVSQASLRQAI 194
+ G FV L VG SGAGKST+++L+++ SG I ++ Q++ + + LR+ I
Sbjct: 24 ISAGE-FVFL--VGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80
Query: 195 GVVPQDTVLFNN 206
GVV QD L +
Sbjct: 81 GVVFQDFRLLPD 92
Score = 28.5 bits (64), Expect = 3.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK 78
+EF NV+ +Y A L I+ ++ AG+ + L+ SG K TLLK
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKS------TLLK 45
Score = 27.4 bits (61), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+EF NV+ +Y A L I+ ++ AG
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAG 27
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 63.7 bits (155), Expect = 1e-11
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTTIIVAHRL 120
LSGG+K+RVAIA L P+I++ DE T+ LD K E +Q L+ ++T ++ H +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
++ ADE++VM G+I++ G+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 63.3 bits (154), Expect = 1e-11
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
+L+ G+KQR+ +AR L+ P++++ DEA ++LD + + + + + + I V
Sbjct: 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
L + H +D++LVMH GE+VERGS
Sbjct: 209 HLGMMKHISDQVLVMHQGEVVERGS 233
Score = 31.7 bits (72), Expect = 0.37
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+L +G++G+GKST+ ++L + SG++ ID+ + + Q I ++ QD
Sbjct: 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQD 95
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 63.4 bits (155), Expect = 1e-11
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 13/88 (14%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTII 115
SGG++QR+AIAR L+ P +V+ DE SALD + + Q L + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG-----LSYVF 210
Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGS 142
++H LS + H ADE++VM+ G VE+G+
Sbjct: 211 ISHDLSVVEHIADEVMVMYLGRCVEKGT 238
Score = 39.6 bits (93), Expect = 0.001
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLRQAI 194
+ERG +L VG+SG GKST+ RLL G+++ Q++ Q LRQ I
Sbjct: 38 LERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI 94
Query: 195 GVVPQD 200
+V Q+
Sbjct: 95 QIVFQN 100
Score = 28.0 bits (63), Expect = 5.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 LKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAP 80
L +SFT+ GKTLA++ SG K +A T+++ P
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP 67
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 62.7 bits (153), Expect = 2e-11
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+ +RVAIA L P++++LDE T+ LD K + + ++ + TT++V H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ AD+I+VMH G + +G+
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGT 229
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 62.1 bits (151), Expect = 2e-11
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 29 AVEFRNVSFSYTPERAILKN----ISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
AV+ S + RAI++ + T A K LSGG KQRVAIAR L P+++L
Sbjct: 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLL 137
Query: 85 LDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL-STIIHADEILVM------HAG 135
LDE ALD T N+Q L ++ T ++V H + ++ +D ++++ + G
Sbjct: 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
Query: 136 EIVE 139
+I+E
Sbjct: 198 QILE 201
Score = 29.0 bits (65), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
F+SL+ G SG GKST++ L+ SG + ++ + I
Sbjct: 13 FISLI--GHSGCGKSTLLNLISGLAQPTSGGVILEGKQI 49
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 63.1 bits (153), Expect = 2e-11
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS--- 102
LK + A A LSGG +QR+AIAR + P ++LLDE SALD N++
Sbjct: 122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181
Query: 103 ALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGS 142
AL+ T + V H + + AD+ +M G + G
Sbjct: 182 ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 60.2 bits (147), Expect = 2e-11
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 47/149 (31%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVP------------AGKT------------------- 58
+E N+S +Y + +LK+IS T+ AGK+
Sbjct: 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 59 --------LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
LSGGEK R+A+A+ LL+ P ++LLDE T+ LD ++ ++ AL
Sbjct: 60 GSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--P 117
Query: 111 RTTIIVAH-R--LSTIIHADEILVMHAGE 136
T I+V+H R L + A +I+ + G+
Sbjct: 118 GTVILVSHDRYFLDQV--ATKIIELEDGK 144
Score = 27.8 bits (63), Expect = 3.3
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+E N+S +Y + +LK+IS T+ G
Sbjct: 1 IELENLSKTY-GGKLLLKDISLTINPG 26
Score = 27.8 bits (63), Expect = 4.1
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDI-FIDNQNIKTVSQAS 189
VG++GAGKST+++L+ + + G + + I Q S
Sbjct: 32 VGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS 72
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 61.9 bits (151), Expect = 3e-11
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG++QRV +AR L P ++L+DE ALD T +Q R+ +T + V H
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ AD I +M GEIV+ G+
Sbjct: 196 IDEAFRLADRIAIMKNGEIVQVGT 219
Score = 50.0 bits (120), Expect = 3e-07
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G SG+GK+T ++++ R + SG+IFID ++I+ LR+ IG V Q LF
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87
Score = 38.1 bits (89), Expect = 0.003
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEK 67
+EF NV+ Y + + N++ + G+ L L+ SG K
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGK 40
Score = 35.0 bits (81), Expect = 0.030
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+EF NV+ Y + + N++ + G+ L
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLV 31
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 62.2 bits (151), Expect = 3e-11
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
LSGG++QR+ +ARTL P+I+LLDE TSALD K I+ + + S T +IV H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 121 -------STIIHADEILVMHAG 135
T+ + +LV HA
Sbjct: 243 QASRVSDYTMFFYEGVLVEHAP 264
Score = 34.9 bits (80), Expect = 0.038
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R + R D+ +G + D ++I K + LR+ IG+V Q
Sbjct: 71 IGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130
Query: 203 LFNNSI 208
F SI
Sbjct: 131 PFPKSI 136
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 63.3 bits (154), Expect = 3e-11
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 63 SGGEKQRVAIARTLLK-APQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
S G++Q + +AR LLK +L+DEAT+ +D +R IQ+ + ++ T I +AHRL
Sbjct: 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506
Query: 122 TIIHADEILVMHAGEIVERGS 142
T+ D+I+VM G + E GS
Sbjct: 1507 TVAQYDKIIVMDHGAVAEMGS 1527
Score = 49.4 bits (118), Expect = 1e-06
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT-ERNIQSALNRVCASRTTIIVAHRL 120
LSGG+K RV++AR + + LLD+ SALD ER ++ A +T ++ H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 121 STIIHADEILVMHAGEIVERGS 142
+ AD ++ + G + GS
Sbjct: 843 HVVPRADYVVALGDGRVEFSGS 864
Score = 45.9 bits (109), Expect = 2e-05
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG++G+GKST++ R +V G+I ++ + I LR+ ++PQD VLF+ +++
Sbjct: 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401
Score = 29.7 bits (67), Expect = 2.2
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V RG L V L G +G+GKST+++ L +++ G ++ + ++I V
Sbjct: 683 VPRGKLTVVL---GATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYV 726
Query: 198 PQDTVLFNNSIKAIQKN--FVDMENMFDL 224
PQ + N +++ N F D E+ L
Sbjct: 727 PQQAWIMNATVRG---NILFFDEEDAARL 752
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 62.8 bits (153), Expect = 4e-11
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
LSGG++QRV+IAR L+ Q++L DE T ALD+ + + + L+++ T IIV H
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
Query: 121 STIIHADEILVMHAGEIV 138
A+ ++ + GEIV
Sbjct: 205 QVAAQAERVIEIRDGEIV 222
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 61.0 bits (148), Expect = 5e-11
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 21 PMLCVAQGAVE----FRNVSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQRVAIAR 74
P L V + +E +S RA +LK + A + LSGG++QRVAIAR
Sbjct: 95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR 154
Query: 75 TLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRLSTIIH-ADEILVM 132
L+ PQ++L DE T+ALD + I S + + + T +IV H + A ++ M
Sbjct: 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYM 214
Query: 133 HAGEIVERGS 142
G IVE+G
Sbjct: 215 ENGHIVEQGD 224
Score = 32.5 bits (74), Expect = 0.17
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ-----NIKTVSQA-SLRQAIGVVPQ 199
+L+ +G SGAGKS+++R+L SG + I + LR+ +G+V Q
Sbjct: 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89
Score = 30.2 bits (68), Expect = 0.97
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLD 86
+++ ++ Y +A L +I+ P G+TL LL SG K + LL+ P+ L+
Sbjct: 2 SIQLNGINCFYGAHQA-LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 87 EATSALD---TKTERNIQ 101
A + D T +++ I+
Sbjct: 61 IAGNHFDFSKTPSDKAIR 78
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 62.0 bits (151), Expect = 5e-11
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 32 FRNVSFSYT-------PERAILKN--------ISFTVPAGKTLALLSGGEKQRVAIARTL 76
F N++F T P A +K + A + A LSGG+KQRVA+AR L
Sbjct: 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151
Query: 77 LKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTIIH-ADEILVMH 133
PQI+LLDE ALD + + ++ L ++ T++ V H + AD ++VM
Sbjct: 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211
Query: 134 AGEIVERGS 142
G I + G+
Sbjct: 212 QGNIEQAGT 220
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 59.8 bits (146), Expect = 6e-11
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 41 PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
+ ++ +NI+ + LLSGG +Q+V +AR L + P++++LDE T +D + I
Sbjct: 91 LDLSVAENIALSS-------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
Query: 101 QSALNRVCASRTTIIVAHRLST----IIH-ADEILVMHAGEI 137
+ + + +++ +S+ ++ D ILVM+ G I
Sbjct: 144 YRLIRELADAGKAVLL---ISSELDELLGLCDRILVMYEGRI 182
Score = 37.8 bits (89), Expect = 0.002
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 113 TIIVAHRLSTIIHADEI-LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
++ LS ++ + AGEIV G G G G++ + LF
Sbjct: 3 PVLEVRGLSVKGAVRDVSFEVRAGEIV--GI-------AGLVGNGQTELAEALFGLRPPA 53
Query: 172 SGDIFIDNQNIKTVS-QASLRQAIGVVPQD 200
SG+I +D + + S + ++R I VP+D
Sbjct: 54 SGEITLDGKPVTRRSPRDAIRAGIAYVPED 83
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 60.4 bits (147), Expect = 7e-11
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL 120
LSGG++QRVAIAR L+ PQ++L DE T+ALD + I S + + + T +IV H +
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201
Query: 121 STIIH-ADEILVMHAGEIVERG 141
A ++ M G IVE+G
Sbjct: 202 EVARKTASRVVYMENGHIVEQG 223
Score = 33.4 bits (77), Expect = 0.088
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN------QNIKTVSQASLRQAIGVV--- 197
L+ +G SGAGKS+++R+L SG + I + + LR+ +G+V
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 198 ----PQDTVLFNNSIKA 210
P TV N I+A
Sbjct: 91 YNLWPHLTVQ-QNLIEA 106
Score = 31.5 bits (72), Expect = 0.37
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQIVLLD 86
+++ ++ Y +A L +I+ P G+TL LL SG K + LL+ P+ L+
Sbjct: 2 SIQLNGINCFYGAHQA-LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 87 EATSALDTKTERNIQ 101
A + D + +
Sbjct: 61 IAGNHFDFSKTPSDK 75
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 60.6 bits (147), Expect = 7e-11
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
LSGG++QRV IAR L +P+I+LLDE TSALD + I+ L + T ++V +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQ 208
Query: 121 --STIIHADEILVMHAGEIVERGS 142
S I +D G+++E
Sbjct: 209 QASRI--SDRTGFFLDGDLIEYND 230
Score = 32.1 bits (73), Expect = 0.24
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG+GKST++R + R D+ +G I + NI LR+ IG+V Q
Sbjct: 37 IGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96
Query: 203 LFNNSI 208
F SI
Sbjct: 97 PFPMSI 102
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 60.9 bits (148), Expect = 7e-11
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-------TERNIQSALNRVCASRT 112
A LSGG+KQRVAIA + P+I++LDEATS LD + T + I+ T
Sbjct: 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-----MT 193
Query: 113 TIIVAHRLSTIIHADEILVMHAGEI 137
I + H L + +D +LVM G++
Sbjct: 194 VISITHDLDEVALSDRVLVMKNGQV 218
Score = 45.5 bits (108), Expect = 1e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +G+GKST +RL+ + ESG I ID + + +R IG+V Q+
Sbjct: 39 IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN 89
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 60.6 bits (147), Expect = 8e-11
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 9/88 (10%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-----TTII 115
+L+ G+KQRVA+AR L+ P+I++ DEA ++LD + +N + + + I
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL---INLMLELQEKQGISYIY 205
Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGS 142
V + I H +D++LVMH GE+VERGS
Sbjct: 206 VTQHIGMIKHISDQVLVMHEGEVVERGS 233
Score = 30.6 bits (69), Expect = 0.71
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G++G+GKST+ ++L + SG+I I++ + + + I ++ QD
Sbjct: 45 IGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQD 95
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 60.4 bits (147), Expect = 1e-10
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-----TTIIV 116
LSGG+K+RVAIA + P+I++LDE T+ LD K I LN++ T I+V
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEI---LNKIKELHKEYNMTIILV 201
Query: 117 AHRLSTIIH-ADEILVMHAGEIVERGS 142
+H + + AD I+VM+ G+ +G+
Sbjct: 202 SHSMEDVAKLADRIIVMNKGKCELQGT 228
Score = 40.8 bits (96), Expect = 4e-04
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
FV L +G +G+GKST+I+ L SG I ID +I K V + +R+ +G+V Q
Sbjct: 35 FVGL--IGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ 90
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 60.4 bits (147), Expect = 1e-10
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
LSGG++QR+ IAR + P+++LLDE TSALD + I+ + + + T +IV H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQ 228
Query: 119 ---RLSTIIHADEILVMHAGEIVERG---SLFVS 146
R+S D M+ G++VE G +LF S
Sbjct: 229 QAARVS-----DYTAFMYMGKLVEYGDTDTLFTS 257
Score = 41.2 bits (97), Expect = 3e-04
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST++R R D V+ G+I +D QNI K V A LR+ +G+V Q
Sbjct: 57 IGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116
Query: 203 LFNNSI 208
F SI
Sbjct: 117 PFPKSI 122
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 60.6 bits (147), Expect = 1e-10
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR--VCASRTTIIVAHR 119
+SGG+ +++AI L P I++LDE T+ LD +++R + L ++T I+V+H
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
Query: 120 LSTII-HADEILVMHAGEIVERGS---LFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
++ + +ADE++VM G IV + S LF ++ G I++L YD E
Sbjct: 206 MNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQ---YDFE 258
Score = 34.4 bits (79), Expect = 0.044
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 15/93 (16%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQ--ASLRQAIGVVPQ--DTVL 203
VGQ+G+GKST+I+ + +G + +D+ I KT + +R+ IG+V Q ++ L
Sbjct: 39 VGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98
Query: 204 FNNSI-KAIQ---KNF-VDMENM----FDLLQE 227
F +++ + I KNF ++++ + LL +
Sbjct: 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 59.2 bits (144), Expect = 1e-10
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR+AIA LL +++ DE TS LD K + + + A +IV
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV----- 181
Query: 122 TIIH--------ADEILVMHAGEIV 138
I H D +L++ G IV
Sbjct: 182 -ITHDYEFLAKVCDRVLLLANGAIV 205
Score = 39.2 bits (92), Expect = 9e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT--VLFNNS 207
G++GAGK+T+ ++L SG I ++ + IK R++IG V QD LF +S
Sbjct: 32 TGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDVDYQLFTDS 88
Query: 208 IKA 210
++
Sbjct: 89 VRE 91
Score = 34.2 bits (79), Expect = 0.044
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 34 NVSFSYTPERAILKNISFTVPAGKTLAL 61
N+SFSY IL ++S + AG+ +AL
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIAL 31
Score = 32.2 bits (74), Expect = 0.17
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 251 NVSFSYTPERAILKNISFTVPAGKTLA 277
N+SFSY IL ++S + AG+ +A
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIA 30
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 59.2 bits (144), Expect = 2e-10
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE+QRVAIAR ++ P ++L DE T LD I + TT+++A H L
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197
Query: 121 STI 123
+
Sbjct: 198 ELV 200
Score = 53.0 bits (128), Expect = 2e-08
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAI 194
+ +G FV L G SGAGKST+++L++ G I ++ ++ + LR+ I
Sbjct: 25 IPKGE-FVFL--TGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 195 GVVPQD 200
GVV QD
Sbjct: 82 GVVFQD 87
Score = 29.9 bits (68), Expect = 1.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVP------------AGKT--LALLSGGEK 67
+ F NVS +Y R L+++SF +P AGK+ L L+ G E+
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53
Score = 28.7 bits (65), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+ F NVS +Y R L+++SF +P G
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKG 28
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 59.1 bits (143), Expect = 2e-10
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L++ I+LLDE SALD + + + ++C+ R T ++V H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 120 LSTIIH-ADEILVMHAGEI 137
LS A +I V+ G+I
Sbjct: 189 LSDARAIASQIAVVSQGKI 207
Score = 38.3 bits (89), Expect = 0.002
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 120 LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
L + + E L M V G + V+++ G SGAGKST++ L+ F + SG I +++
Sbjct: 3 LDKVRYEYEHLPMEFDLNVADGEI-VAIM--GPSGAGKSTLLNLIAGFIEPASGSIKVND 59
Query: 180 QNIKTVSQASLRQAIGVVPQDTVLF 204
Q+ + A ++ + ++ Q+ LF
Sbjct: 60 QSHTGL--APYQRPVSMLFQENNLF 82
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 60.7 bits (148), Expect = 2e-10
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 52/246 (21%)
Query: 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
L + F + ++ LSGG ++RVA+AR LL+ P ++LLDE T+ LD ++ ++ L
Sbjct: 138 ALLGLGFP-DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196
Query: 105 NRVCASRTTIIVAH-R--LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTII 161
R T I+V+H R L + A IL + G++ + S L+ K+ +
Sbjct: 197 KR--YPGTVIVVSHDRYFLDNV--ATHILELDRGKLTPYKGNYSSYLEQ------KAERL 246
Query: 162 RLLFRFY---------DVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQ 212
R Y + E +A + IK ++
Sbjct: 247 RQEAAAYEKQQKELAKEQEWIRRGK--AAASKAKKA----------------KSRIKRLE 288
Query: 213 KNFVDMENMFDLLQETCD-----VIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNIS 267
K +E + + P L +EF NVS Y R +LK++S
Sbjct: 289 K----LEARLAEERPVEEGKPLAFRFPPPGKRLGKLV--LEFENVSKGYDGGRLLLKDLS 342
Query: 268 FTVPAG 273
F + G
Sbjct: 343 FRIDRG 348
Score = 50.7 bits (122), Expect = 3e-07
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 43 RAILKNISFT-VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
RA L FT K + +LSGGEK R+ +A+ LL+ P ++LLDE T+ LD ++ ++
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 102 SALNRVCASRTTIIVAH-R--LSTIIHADEILVMHAGEIVERG 141
AL T ++V+H R L + A I ++ G
Sbjct: 480 EALLDF--EGTVLLVSHDRYFLDRV--ATRIWLVEDKVEEFEG 518
Score = 36.5 bits (85), Expect = 0.013
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 18/56 (32%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIAR-------TLLK 78
+EF NVS Y R +LK++SF + G R+AI TLLK
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRG-----------DRIAIVGPNGAGKSTLLK 366
Score = 34.1 bits (79), Expect = 0.065
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
VG++GAGKST++++L + +SG++ ++ +G + Q+ L
Sbjct: 35 VGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLR----------VGYLSQEPPLDPE 80
Score = 29.1 bits (66), Expect = 2.7
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
VG +GAGKST+++LL SG + + +K IG Q
Sbjct: 354 VGPNGAGKSTLLKLLAGELGPLSGTV-KVGETVK----------IGYFDQH 393
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 60.5 bits (147), Expect = 2e-10
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG +QRV +AR L P I+L+DEA SALD +Q L + A +T + + H
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L + D I +M GEIV+ G+
Sbjct: 225 LDEALRIGDRIAIMKDGEIVQVGT 248
Score = 54.3 bits (131), Expect = 2e-08
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR------ 191
VE G +FV + G SG+GKST++RLL R + G+I +D ++I +S A LR
Sbjct: 51 VEEGEIFVIM---GLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKK 107
Query: 192 -----QAIGVVPQDTVLFN 205
Q+ ++P TVL N
Sbjct: 108 ISMVFQSFALLPHRTVLEN 126
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 59.3 bits (143), Expect = 2e-10
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
A LSGG+KQRVA+A + P+I++LDE+TS LD + I ++ + T + +
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSIT 198
Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
H L +D ILVM AGEI++ +
Sbjct: 199 HDLDEAASSDRILVMKAGEIIKEAA 223
Score = 34.7 bits (79), Expect = 0.036
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+GQ+G+GKST RL+ ++ G + ID + + + +LR+ IG+V Q+
Sbjct: 39 IGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQN 89
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 59.4 bits (144), Expect = 3e-10
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGEK+RVAIA + PQ+++LDE T+ LD + + + LN + + T I H+
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L + AD I VM G IV G+
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYGT 221
Score = 29.8 bits (67), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E R++ +SY+ + L NI+F P +A++
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVI 36
Score = 29.0 bits (65), Expect = 2.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +GAGKST+ R SG + I + I + +R+ +G+V Q+
Sbjct: 36 IGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN 86
Score = 28.6 bits (64), Expect = 3.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E R++ +SY+ + L NI+F P +A
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIA 34
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 59.0 bits (143), Expect = 3e-10
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH 118
A LSGG++QRVAIAR L P+++L DE TSALD + + + + RT ++V H
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210
Query: 119 RLSTIIH-ADEILVMHAGEIVERG 141
+ + ++ +H G+I E G
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEG 234
Score = 28.2 bits (63), Expect = 4.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
+G SG+GKST +R + +G I ++ + I+
Sbjct: 38 IGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLK 73
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 59.1 bits (143), Expect = 3e-10
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAGE 136
+ AD+IL++H G
Sbjct: 220 EHLKKADKILILHEGS 235
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 58.7 bits (142), Expect = 3e-10
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IARTL P+++L+DE SALD I+ + + T IIV H +
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
Query: 122 TIIHADEIL-VMHAGEIVERG 141
+ M+ G+++E
Sbjct: 210 QAARVSDYTGFMYLGKLIEFD 230
Score = 39.0 bits (91), Expect = 0.001
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 202
+G SG GKST++R R D+ GDI + +NI +LR+ IG+V Q
Sbjct: 38 IGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97
Query: 203 LFNNSI 208
F SI
Sbjct: 98 PFPKSI 103
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 58.9 bits (143), Expect = 3e-10
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV------C 108
A + LS GE++RV IAR L+K P++++LDE LD + LNR+
Sbjct: 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI---AREQLLNRLEELAASP 221
Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
+ + V H HA+EI
Sbjct: 222 GAPALLFVTH------HAEEIP 237
Score = 30.7 bits (70), Expect = 0.58
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVV 197
VG +GAGK+T++ LL + SGD+ + + LR+ IG+V
Sbjct: 63 VGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111
Score = 30.0 bits (68), Expect = 1.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 15/53 (28%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVP------------AGKT--LALLSGGEKQ 68
+E +NVS + IL ++S+ V AGKT L+LL+G
Sbjct: 32 IELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Score = 29.2 bits (66), Expect = 2.1
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAG 273
+E +NVS + IL ++S+ V G
Sbjct: 32 IELKNVSVRRN-GKKILGDLSWQVNPG 57
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 58.9 bits (143), Expect = 3e-10
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGG+K+RVAIA L P+I++LDE TS LD I L + TII++ H +
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197
Query: 121 STI-IHADEILVMHAGEIVERGS 142
+ ++AD++ VM G+I++ G+
Sbjct: 198 DLVPVYADKVYVMSDGKIIKEGT 220
Score = 35.1 bits (81), Expect = 0.030
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAI 194
E+G + V+LL G +GAGKST+ SG++ I + IK + SL R+ +
Sbjct: 25 AEKGEM-VALL--GPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK-YDKKSLLEVRKTV 80
Query: 195 GVVPQ--DTVLFNNSIK 209
G+V Q D LF +++
Sbjct: 81 GIVFQNPDDQLFAPTVE 97
Score = 29.7 bits (67), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E R++ +SY LK I+F G+ +ALL
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALL 34
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 58.8 bits (143), Expect = 3e-10
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD----TKTERNIQSALNRVCASRTTIIVA 117
LSGG ++RVA+AR + P+++ LDE TS LD + I+ + + T I+V
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--TVIMVT 203
Query: 118 HRLSTIIH-ADEILVMHAGEIVERGSL 143
H L +++ AD + V+ G+++ G+
Sbjct: 204 HDLDSLLTIADRVAVLADGKVIAEGTP 230
Score = 51.1 bits (123), Expect = 1e-07
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAI 194
V RG + +G SG+GKST++RL+ + G+I ID ++I +S+ +R+ +
Sbjct: 31 VPRGEILAI---LGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87
Query: 195 GVVPQDTVLF 204
GV+ Q LF
Sbjct: 88 GVLFQQGALF 97
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSG 64
+E R V+ S+ +R IL + VP G+ LA+L G
Sbjct: 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGG 42
Score = 35.3 bits (82), Expect = 0.026
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E R V+ S+ +R IL + VP G+ LA
Sbjct: 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILA 38
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 58.5 bits (142), Expect = 3e-10
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG QRV IA LL P ++ DE T+ LD + + L + T +++ H
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
L + ADE+ VM G IVERG++
Sbjct: 186 LGVVARIADEVAVMDDGRIVERGTVK 211
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 58.9 bits (142), Expect = 4e-10
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG+K+RVA+A + ++LDE T LD K E + + R+ + I+V H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178
+ ++ ADE++VMH G+++ GS F + +L Y +++ I +
Sbjct: 211 MDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYKLKNKGIDLL 270
Query: 179 NQNIKTVSQ 187
N+NI+T+ +
Sbjct: 271 NKNIRTIEE 279
Score = 30.0 bits (67), Expect = 1.2
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN----QNIKTVSQAS-LRQAIGVVPQ--DTV 202
+G +G+GKST+I+L E+G + + N+K + + LR+ IG+V Q +
Sbjct: 43 IGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102
Query: 203 LFNNSI-KAIQKNFV----DMENMFDLLQETCDVIDIPQ 236
LF +I K I V + + + + E ++ +P+
Sbjct: 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE 141
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 58.9 bits (143), Expect = 5e-10
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVAI RTL+ P + LLDE S LD ++ ++R+ RT I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERG 141
++ + AD+I+V+ AG + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
Score = 42.3 bits (100), Expect = 2e-04
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
VG SG GKST++R++ D+ SGD+FI + + V A + +G+V Q L+
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALY 87
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 57.9 bits (140), Expect = 5e-10
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SGAGKST+I+L+ R D G I ID +IKT+ LR+ IG+V Q LF ++K
Sbjct: 35 VGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94
Score = 56.0 bits (135), Expect = 3e-09
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE QRV+IARTL P+++LLDE TSALD + I+ + ++ T I + H
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ D ++ G +VE
Sbjct: 192 MEQAKRIGDYTAFLNKGILVEYA 214
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 59.1 bits (143), Expect = 5e-10
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ----SALNRVCASRTTIIVA 117
LSGG++QRVA+AR+L K P+++LLDE ALD K +Q L RV T ++V
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCVMVT 207
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
H + + A I +M+ G+ V+ G
Sbjct: 208 HDQEEAMTMAGRIAIMNRGKFVQIGE 233
Score = 34.0 bits (78), Expect = 0.062
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 140 RGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
+G +F L G SG GKST++R+L F +G I +D ++ V ++ I ++ Q
Sbjct: 44 KGEIFALL---GASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQ 98
Query: 200 DTVLF 204
LF
Sbjct: 99 SYALF 103
Score = 29.8 bits (67), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 13 DVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
D I PQA +E RN++ S+ + A+ ++S T+ G+ ALL
Sbjct: 3 DAIPRPQAKTRKALTPLLEIRNLTKSFDGQHAV-DDVSLTIYKGEIFALL 51
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 58.1 bits (140), Expect = 6e-10
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 25 VAQGAVEFRNVSFSYTPERAI--LKNISFTVPA-GKTLALLSGGEKQRVAIARTLLKAPQ 81
V + ++ +S ERA+ L + A GK LSGG++QRV+IAR L P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 82 IVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRLSTIIH-ADEILVMHAGEIVE 139
++L DE TSALD + + + ++ +T ++V H + H + ++ +H G+I E
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232
Query: 140 RG 141
G
Sbjct: 233 EG 234
Score = 31.1 bits (70), Expect = 0.47
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
+G SG+GKST +R + G I ++ Q I V
Sbjct: 37 IGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLV 72
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 59.0 bits (143), Expect = 7e-10
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVAHRL 120
LSGGEKQRV +AR L K P + L DE T LD +T + + +AL V AS ++++
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 121 STIIH--ADEILVMHAGEIVERGS 142
+I +D+ + + GEI E G+
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGT 252
Score = 55.2 bits (133), Expect = 1e-08
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALN-RVCASRTTIIVAHR 119
LS GE+ RVA+A+ L+K P+IV+LDE T +D T+ ++ S L R +T IIV+H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ ++ D +M G+IV+ G
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIG 510
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 57.7 bits (139), Expect = 7e-10
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
LSGG++QR+ IART+ +P+++L+DE SALD + I+ ++++ T +IV H +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206
Query: 121 -STIIHADEILVMHAGEIVERG 141
+T + ++ GEI+E G
Sbjct: 207 QATRVSKYTSFFLN-GEIIESG 227
Score = 36.9 bits (85), Expect = 0.006
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST IR L R D+ G I++D +I V LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94
Query: 203 LFNNSI 208
F SI
Sbjct: 95 PFPKSI 100
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 57.7 bits (140), Expect = 8e-10
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIV 116
+ LLSGG++Q +++ L P+I+LLDE T+ALD KT + ++ TT++V
Sbjct: 146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205
Query: 117 AHRLSTIIH-ADEILVMHAGEIV 138
H + + + ++++H+G+IV
Sbjct: 206 THNMEDALDYGNRLIMLHSGKIV 228
Score = 34.6 bits (80), Expect = 0.037
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
FV+++ G +GAGKST++ + SG I ID ++ S A + V QD
Sbjct: 34 FVTVI--GSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 57.8 bits (140), Expect = 8e-10
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
A LSGG+KQRVA+AR L+ P ++LLDE ALD T +Q + + T ++V
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191
Query: 118 HRLS-TIIHADEILVMHAGEI 137
H +S + AD +L++ G+I
Sbjct: 192 HDVSEAVAMADRVLLIEEGKI 212
Score = 31.2 bits (71), Expect = 0.53
Identities = 13/21 (61%), Positives = 18/21 (85%), Gaps = 2/21 (9%)
Query: 144 FVSLLQVGQSGAGKSTIIRLL 164
FV++ VG+SG GKST++RLL
Sbjct: 40 FVAV--VGRSGCGKSTLLRLL 58
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 57.2 bits (138), Expect = 8e-10
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
R L+ + T A + + LSGG++QRV +AR L P ++LLDE + LD T+ +
Sbjct: 95 RDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154
Query: 103 ALNRVCASRTTII-VAHRLSTIIHADEILVMHAGEIVERG 141
+ + T I+ H L+ + + +V+ G ++ G
Sbjct: 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADG 194
Score = 31.7 bits (72), Expect = 0.27
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L GE + LL G +GAGK+T++R + G + + S
Sbjct: 1 LSADKGE-------LLGLL--GPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGK 46
Query: 190 LRQAIGVVPQ 199
+ IG VPQ
Sbjct: 47 GWRHIGYVPQ 56
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 58.5 bits (141), Expect = 8e-10
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG +QRV +AR L P I+L+DEA SALD +Q L ++ A RT + ++H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L + D I +M GE+V+ G+
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGT 248
Score = 47.0 bits (111), Expect = 5e-06
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 131 VMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL 190
V A +E G +FV + G SG+GKST++RLL R + G + ID +I +S A L
Sbjct: 44 VKDASLAIEEGEIFVIM---GLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100
Query: 191 R-----------QAIGVVPQDTVLFNNS 207
R Q+ ++P TVL N +
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTA 128
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 57.6 bits (139), Expect = 9e-10
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P ++L+DE TSALD + R I+ + ++ T +IV H +
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQ 215
Query: 122 TIIH-ADEILVMHAGEIVE 139
+D+ + GE+VE
Sbjct: 216 QAARVSDQTAFFYMGELVE 234
Score = 29.9 bits (67), Expect = 1.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST I+ L + +G++ + NI V LR+ IG+V Q
Sbjct: 44 IGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103
Query: 203 LFNNSI 208
F SI
Sbjct: 104 PFPQSI 109
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 57.3 bits (138), Expect = 1e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+I+L DE TSALD +I+ ++ + T +IV H +
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
+D M+ GE++E G+
Sbjct: 222 QAARVSDYTAYMYMGELIEFGA 243
Score = 32.3 bits (73), Expect = 0.22
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFI--DNQNI--KTVSQASLRQAIGVVPQD 200
+G SG GKST +R R +D+ G+I + DN NI V +R I +V Q
Sbjct: 48 IGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107
Query: 201 TVLFNNSI 208
F SI
Sbjct: 108 PNPFPKSI 115
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 56.4 bits (137), Expect = 1e-09
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 35 VSFSYTPERAILKNISF--TVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
++F Y PE +KN F V G SGGEK+R I + LL P + +LDE S L
Sbjct: 81 LAFQYPPEIPGVKNADFLRYVNEG-----FSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135
Query: 93 DTKTERNIQSALNR-VCASRTTIIVAH--RLSTIIHADEILVMHAGEIVERGS 142
D R + +N+ ++ +I+ H RL I D + V++ G IV+ G
Sbjct: 136 DIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
Score = 31.7 bits (73), Expect = 0.24
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIK 183
L + GE+ +L G +G+GKST+ + + Y+V G+I ++I
Sbjct: 21 LTIKKGEVH---ALM------GPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67
Score = 27.1 bits (61), Expect = 9.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 42 ERAILKNISFTVPAGKTLALL 62
+ ILK ++ T+ G+ AL+
Sbjct: 12 GKEILKGVNLTIKKGEVHALM 32
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 57.4 bits (138), Expect = 1e-09
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++L+DE TS +D + I+ + + +IV+H
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
+ AD + ++ GE+VE GS
Sbjct: 214 QVARVADYVAFLYNGELVEWGS 235
Score = 31.2 bits (70), Expect = 0.54
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFID------NQNIKTVSQASLRQAIGVVPQ 199
+G SG+GKST++++L R ++ I +D ++I + LR+ +G+V Q
Sbjct: 42 MGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 58.8 bits (142), Expect = 1e-09
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD + LD TE+ I +S L ++ +++T I+V +L
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKL 608
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 609 EHLKKADKILLLHEG 623
Score = 47.6 bits (113), Expect = 4e-06
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
+LS G KQ + +AR++L +I+LLDE ++ LD T + I+ L + ++ T I+ HR+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412
Query: 121 STIIHADEILVMHAGEIVERGSL 143
++ + LV+ + + S+
Sbjct: 1413 EALLECQQFLVIEGSSVKQYDSI 1435
Score = 44.1 bits (104), Expect = 6e-05
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G++G+GKST++ L R E G+I ID + +V+ + R+A GV+PQ +F+ + +
Sbjct: 1251 LGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309
Score = 34.9 bits (80), Expect = 0.055
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 VIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL 62
VI+ P A + G ++ + ++ YT RA+L+++SF+V G+ + LL
Sbjct: 1202 VIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLL 1251
Score = 31.4 bits (71), Expect = 0.56
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 231 VIDIPQAPMLCVAQGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTL 276
VI+ P A + G ++ + ++ YT RA+L+++SF+V G+ +
Sbjct: 1202 VIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRV 1248
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 57.4 bits (139), Expect = 1e-09
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LS G+K+RVAIA L P +++LDE + LD + + + L+R+ T+IVA H +
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV 198
Query: 121 STIIH-ADEILVMHAGEIVERG--SLFVSLLQVGQSG 154
AD+++V+ G ++ G SL V Q+G
Sbjct: 199 DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAG 235
Score = 32.0 bits (73), Expect = 0.29
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ GS L G +GAGKST++ L Y + G + + + + ++ +R +G+V
Sbjct: 28 IPEGSKTALL---GPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84
Query: 198 PQD 200
QD
Sbjct: 85 FQD 87
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E ++ F Y LK +S ++P G ALL
Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALL 37
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 57.4 bits (139), Expect = 1e-09
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG+ QRV +AR L P++++LDEA S LD + + L ++ T + + H
Sbjct: 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211
Query: 120 LSTIIH-ADEILVMHAGEIVE 139
L + ++VM G+IVE
Sbjct: 212 LRLVERFCQRVMVMDNGQIVE 232
Score = 31.2 bits (71), Expect = 0.44
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA- 188
L + +GE V +LL G+SG GKST+ RLL G++ + + +++A
Sbjct: 33 LSLKSGETV-------ALL--GRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83
Query: 189 --SLRQAIGVVPQD 200
+ R+ I +V QD
Sbjct: 84 RKAFRRDIQMVFQD 97
Score = 27.3 bits (61), Expect = 8.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 41 PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTL--LKAP---QIVLLDEATSALD 93
+ +L N+S ++ +G+T+ALL SG K +AR L L++P + E + L+
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKS--TLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 94 TKTERNIQSALNRV 107
+ + + V
Sbjct: 81 RAQRKAFRRDIQMV 94
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 54.6 bits (132), Expect = 1e-09
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATS 90
LSGG+KQRVAIAR LLK P+++LLDE T+
Sbjct: 91 LSGGQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 43.1 bits (102), Expect = 2e-05
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 158 STIIRLLFRFYDVESGDIFIDNQNIKTVSQ-ASLRQAIGVVPQDTVLFNN 206
ST+++L+ SG I +D ++ +S LR+ IGVV QD LF
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPE 50
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 57.4 bits (139), Expect = 1e-09
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV--AHR 119
LS G++ R +A LL P+++ LDE T LD + NI+ L R ++ H
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLFVSLLQVG 151
I D +L++ G++V G+L Q G
Sbjct: 217 FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 57.7 bits (140), Expect = 2e-09
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII- 115
+ + LLSGG +Q+VAIAR L+ P++++LDE T +D ++ I +N+ A +II
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450
Query: 116 VAHRLSTII-HADEILVMHAGEI 137
V+ + ++ +D ILVMH G I
Sbjct: 451 VSSEMPEVLGMSDRILVMHEGRI 473
Score = 38.1 bits (89), Expect = 0.004
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQSALNRVCASRTTII-VAHR 119
LS GE+Q V IA+ L +++++DE T AL DT+TE ++ + + + I+ ++HR
Sbjct: 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-SLFRVIRELKSQGRGIVYISHR 200
Query: 120 LSTIIH-ADEILVMHAGE-IVER 140
L I D++ V G+ I ER
Sbjct: 201 LKEIFEICDDVTVFRDGQFIAER 223
Score = 31.5 bits (72), Expect = 0.48
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 132 MHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASL 190
+ GEI L VS G GAG++ ++++L+ SG + +D + T S Q L
Sbjct: 275 LRKGEI-----LGVS----GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 191 RQAIGVVPQD 200
I + +D
Sbjct: 326 ANGIVYISED 335
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS-QASLRQAIGVVPQD 200
VG++GAGKST++++L Y ++G I + + ++S IG++ Q+
Sbjct: 36 VGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 56.6 bits (137), Expect = 2e-09
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++L+DE TSALD + I+ + + T +IV H +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQ 206
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D+ GEIVE G
Sbjct: 207 QASRISDKTAFFLNGEIVEFG 227
Score = 39.7 bits (93), Expect = 7e-04
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D + S G++ +D Q+I + LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94
Query: 203 LFNNSI 208
F SI
Sbjct: 95 PFPMSI 100
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 56.7 bits (137), Expect = 2e-09
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IART+ P+++L+DE SALD + I+ ++ + + T +IV H +
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQ 214
Query: 122 TIIHADEILVMHAGEIVERGS 142
+ ++ E VE GS
Sbjct: 215 QAVRVSDMTAFFNAEEVEGGS 235
Score = 35.5 bits (82), Expect = 0.020
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST++R L R D +E G + D ++ V +R+ IG+V Q
Sbjct: 45 IGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104
Query: 203 LFNNSI 208
F SI
Sbjct: 105 PFPKSI 110
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 57.0 bits (137), Expect = 2e-09
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++Q + +ARTL P+++LLDE TSALD T I+ + + T IIV H L+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D + G +VE G
Sbjct: 224 QAARISDRAALFFDGRLVEEG 244
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 56.6 bits (136), Expect = 2e-09
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
SGG++QR+ IAR L P++VLLDE TSALD + I+ L + T I+V H L
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ 207
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D+ + G+++E G
Sbjct: 208 QAGRISDQTAFLMNGDLIEAG 228
Score = 33.9 bits (77), Expect = 0.063
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFY-DVE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D+E +G+I + QNI + LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95
Query: 203 LFNNSI 208
F S+
Sbjct: 96 PFPFSV 101
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 56.4 bits (136), Expect = 2e-09
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IART+ P ++L+DE TSALD I+ + + + T +IV H +
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQ 205
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D GE+VE
Sbjct: 206 QARRISDRTAFFLMGELVEHD 226
Score = 36.4 bits (84), Expect = 0.011
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI-KTVSQASLRQAIGVVPQDTVL 203
+G SG GKST++R L R D +E +G + +D ++I + A LR +G+V Q
Sbjct: 35 IGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94
Query: 204 FNNSI 208
F SI
Sbjct: 95 FPMSI 99
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 56.0 bits (136), Expect = 2e-09
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG K+++++A L+ P ++LLDE TS LD + R I + V R+ I+ H +
Sbjct: 134 LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMD 193
Query: 122 TI-IHADEILVMHAGEIVERGS 142
D I +M G++ GS
Sbjct: 194 EAEALCDRIAIMSDGKLRCIGS 215
Score = 52.1 bits (126), Expect = 4e-08
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 132 MHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLR 191
++ GEI LL G +GAGK+T +++L SG +I+ +I+T + + R
Sbjct: 25 VYKGEIF-------GLL--GHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAAR 74
Query: 192 QAIGVVPQDTVLFNN 206
Q++G PQ LF+
Sbjct: 75 QSLGYCPQFDALFDE 89
Score = 28.2 bits (64), Expect = 4.0
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 30 VEFRNVSFSY-TPERAILKNISFTVPAGKTLALL 62
++ RN++ +Y + + ++S V G+ LL
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLL 34
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 56.1 bits (135), Expect = 2e-09
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QRV IAR L P ++LLDE TSALD + I++ L + T I+V H +
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208
Query: 122 TIIH-ADEILVMHAGEIVE 139
+D+ G ++E
Sbjct: 209 QASRISDKTAFFLTGNLIE 227
Score = 29.9 bits (67), Expect = 1.1
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D+ +G++ + QNI LR+ +G+V Q
Sbjct: 37 IGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96
Query: 203 LFNNSI 208
F SI
Sbjct: 97 PFPFSI 102
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 56.2 bits (135), Expect = 2e-09
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++LLDE TSALD + I+ L + + + I+V H +
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202
Query: 122 TIIH-ADEILVMHAGEIVERG 141
AD H GE++E G
Sbjct: 203 QGKRVADYTAFFHLGELIEFG 223
Score = 35.0 bits (80), Expect = 0.030
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES---GDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
+G SG GKST +R R D + G + I+ +++K +LR+ +G+V Q +F
Sbjct: 34 IGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93
Query: 207 SI 208
SI
Sbjct: 94 SI 95
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 55.8 bits (134), Expect = 2e-09
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK-TERNIQSALNRVCA--SRTTIIVAH 118
LSGG++QR+ +AR L + IV LD+ SALD ++ +Q + + RT ++V H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 119 RLSTIIHADEILVMHAG 135
+L + HAD I+ M G
Sbjct: 201 KLQYLPHADWIIAMKDG 217
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 56.2 bits (135), Expect = 3e-09
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+I+L+DE TSALD + I+ + + T IIV H +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D G++VE G
Sbjct: 209 QAARVSDTTSFFLVGDLVEHG 229
Score = 34.2 bits (78), Expect = 0.051
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 112 TTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
T ++ A ++ I + D+ V + V+RG+ V+ L +G SG GK+T +R + R +D+
Sbjct: 2 TLLLSAQDVN-IYYGDKQAVKNVNLDVQRGT--VNAL-IGPSGCGKTTFLRAINRMHDLT 57
Query: 172 -----SGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
+G I +D Q+I V ++R+ +G+V Q
Sbjct: 58 PGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 55.8 bits (134), Expect = 3e-09
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IARTL P ++L+DE TSALD + I+ + + S T IIV H +
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQ 210
Query: 122 TIIHADEILVMHAGEIVERGSLFVS 146
AG I +R + F++
Sbjct: 211 -----------QAGRISDRTAFFLN 224
Score = 28.1 bits (62), Expect = 4.4
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VE----SGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
+G SG GKST +R L R D VE G++ + +NI LR+ IG+V Q
Sbjct: 39 IGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 55.5 bits (135), Expect = 3e-09
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR--VCAS 110
PAG LS G+++R+ IAR L P+++LLDE + L E + L R
Sbjct: 139 RPAG----ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAELIRELRERG 193
Query: 111 RTTIIVAHRLSTII-HADEILVMHAGEIVERGS 142
T ++V H + ++ AD + V+ G ++ G+
Sbjct: 194 ITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
Score = 32.8 bits (76), Expect = 0.11
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
V G + L +G +GAGK+T+ L+ F SG + D ++I + + R IG
Sbjct: 23 VRPGEI-HGL--IGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 197 VPQDTVLFNN 206
Q LF
Sbjct: 80 TFQIPRLFPE 89
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 55.8 bits (134), Expect = 3e-09
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IART+ P+++L+DE SALD + I+ + + T IIV H +
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQ 208
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D + G++VE G
Sbjct: 209 QAARVSDYTAFFYMGDLVECG 229
Score = 35.8 bits (82), Expect = 0.015
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
+G SG GKST++R + R +D+ +G I +D+ +I + V S+R+ +G+V Q
Sbjct: 36 IGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 55.4 bits (134), Expect = 4e-09
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG++QRVA+AR L++ I+LLDE SALD + + + +++VC R T ++V+H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L A LV+ G I G
Sbjct: 190 LEDAARIAPRSLVVADGRIAWDGP 213
Score = 37.6 bits (88), Expect = 0.003
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQN 181
G SGAGKST++ L+ F SG + ++ Q+
Sbjct: 32 GPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 56.3 bits (136), Expect = 4e-09
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
SGG+ QR+ IAR L+ P++++ DE SALD + + + L ++ + I +AH L
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL 222
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
+ + H +D +LVM+ G VE G+
Sbjct: 223 AVVKHISDRVLVMYLGHAVELGT 245
Score = 28.1 bits (63), Expect = 5.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA---IGVVPQD 200
VG+SG GKST R + G++ +++ + R I ++ QD
Sbjct: 53 VGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 55.5 bits (134), Expect = 4e-09
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A SGGE+QRV IAR + I+LLDE T++LD + + + A +I
Sbjct: 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALI---- 203
Query: 120 LSTIIHADEI 129
I H +E+
Sbjct: 204 --GIFHDEEV 211
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT-VSQASLRQAIGV 196
G SGAGKST+++ L+ Y +SG I + ++ ++QAS R+ + V
Sbjct: 41 GPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEV 87
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 55.6 bits (134), Expect = 4e-09
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHRL 120
SGG +QR+ IAR L+ P++V +DE T LD + + L + IIV H L
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209
Query: 121 STI-IHADEILVMHAGEIVERG 141
+ A +LVM G +VE G
Sbjct: 210 GVARLLAQRLLVMQQGRVVESG 231
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 54.5 bits (131), Expect = 4e-09
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
LSGGE QRVAIA LL+ L DE ++ LD + N A+ R+ +T ++V H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 120 LSTIIHADEILVMHAGE 136
L+ + + + + + GE
Sbjct: 132 LAVLDYLSDRIHVFEGE 148
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 55.2 bits (134), Expect = 4e-09
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH 118
LSGG++Q++AIAR L+ P+++LLDE T + ++I + R+ A ++V
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
L AD VM G +V G+
Sbjct: 191 YLDFARELADRYYVMERGRVVASGA 215
Score = 33.3 bits (77), Expect = 0.10
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
S I+ L + GE+ +L G++G GK+T+++ L V+SG I +D +
Sbjct: 13 SHILR-GVSLEVPKGEVT-------CVL--GRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 181 NI-KTVSQASLRQAIGVVPQ 199
+I K R I VPQ
Sbjct: 63 DITKLPPHERARAGIAYVPQ 82
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.6 bits (134), Expect = 4e-09
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAG-------KTLALLSGGEKQRVAIARTLLKAPQI 82
VEF +F ++ + A K + + G K+ LSGG+ +RVAIA + P+I
Sbjct: 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI 166
Query: 83 VLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRLSTII-HADEILVMHAGEIVER 140
+ LDE + LD + + + Q + A T I+V H + + +AD++LV+ G++++
Sbjct: 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226
Query: 141 GS 142
S
Sbjct: 227 AS 228
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 29 AVEFRNVSFSYTP----ERAILKNISFTVPAGKTLAL 61
+++F NV + Y+P E+ L NISF + G +AL
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVAL 38
Score = 28.6 bits (64), Expect = 3.7
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQA--SLRQA 193
+E GS FV+L VG +G+GKST+++ SG I I +I +T ++ LR+
Sbjct: 30 LEEGS-FVAL--VGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86
Query: 194 IGVVPQ--DTVLFNNSI 208
+ +V Q + LF N++
Sbjct: 87 VSLVFQFPEAQLFENTV 103
Score = 28.3 bits (63), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 246 AVEFRNVSFSYTP----ERAILKNISFTVPAGKTLA 277
+++F NV + Y+P E+ L NISF + G +A
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVA 37
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 56.2 bits (136), Expect = 5e-09
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE++R+A A LL P ++ DE TS LD+ ++ L + TII H+
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226
Query: 121 STIIHA--DEILVMHAGEIVERGS 142
S+ + D+I++M G + GS
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGS 250
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 55.6 bits (134), Expect = 5e-09
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG+ QR+ IAR L P++++LDEA S LD + I L ++ + T + + H
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
Query: 120 LSTIIH-ADEILVMHAGEIVE 139
L + + VM G+IVE
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVE 231
Score = 32.1 bits (73), Expect = 0.26
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L + GE V LL G+SG GKST+ RLL G + Q++ + +
Sbjct: 32 LSIEEGETV-------GLL--GRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82
Query: 190 ---LRQAIGVVPQD 200
R+ + +V QD
Sbjct: 83 RRAFRRDVQLVFQD 96
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 55.4 bits (133), Expect = 5e-09
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IARTL P ++LLDE SALD + I+ + + + IIV H +
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+ +D G++VE
Sbjct: 225 QALRVSDRTAFFLNGDLVEYD 245
Score = 34.2 bits (78), Expect = 0.048
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R + R D+ G+I + NI ++ +LR+ IG+V Q
Sbjct: 53 IGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112
Query: 203 LFNNSI 208
F SI
Sbjct: 113 PFPKSI 118
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 55.0 bits (133), Expect = 5e-09
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P+++LLDE SALD + I+ + + T +IV H +
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ 216
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
+D M+ GE++E G+
Sbjct: 217 QAARCSDYTAFMYLGELIEFGN 238
Score = 43.8 bits (104), Expect = 4e-05
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 202
+G SG GKST++R R Y++ G+I +D +NI T Q A LR +G+V Q
Sbjct: 45 IGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104
Query: 203 LFNNSI 208
F SI
Sbjct: 105 PFPMSI 110
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 55.5 bits (134), Expect = 6e-09
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHRL 120
SGG +QRV IA LL P++++ DE T+ALD + I + LN + T I++ H L
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
+ D++LVM+AG +E G+
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGN 245
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 54.5 bits (132), Expect = 6e-09
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
A K + S G KQR+ IA LL P +++LDE T+ LD + ++ + + T+
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV 179
Query: 115 IVA-HRLSTI-IHADEILVMHAGEIVERG 141
+++ H LS I AD I +++ G+++E G
Sbjct: 180 LISSHLLSEIQKVADRIGIINKGKLIEEG 208
Score = 35.3 bits (82), Expect = 0.019
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
+G +GAGK+T ++++ +SG+I D ++ +
Sbjct: 32 LGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 55.5 bits (134), Expect = 7e-09
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 13/89 (14%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-------IQSALNRVCASRTTI 114
+SGG++QRVA+AR L+ P+++L DE S LD R+ +Q N T++
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-----ITSL 191
Query: 115 IVAHRLSTIIH-ADEILVMHAGEIVERGS 142
V H S +D ++VM+ G+I++ GS
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
Score = 38.5 bits (90), Expect = 0.002
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA-IGV 196
+++G++ V+LL G SG GK+T++RL+ G IFID ++ V+ S++Q I +
Sbjct: 29 IKQGTM-VTLL--GPSGCGKTTVLRLVAGLEKPTEGQIFIDGED---VTHRSIQQRDICM 82
Query: 197 VPQDTVLF 204
V Q LF
Sbjct: 83 VFQSYALF 90
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 54.8 bits (132), Expect = 7e-09
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG +QRV IAR L PQ++LLDE ALD T +Q L + +++ H
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192
Query: 120 L-STIIHADEILVMHA--GEIVERGSL 143
+ + A ++V+ G +VER L
Sbjct: 193 IEEALFLATRLVVLSPGPGRVVERLPL 219
Score = 31.3 bits (71), Expect = 0.51
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
V +L G SG GK+T++ L+ F G I ++ + + + GVV Q+ L
Sbjct: 33 LVVVL--GPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIEGPGAER--GVVFQNEAL 85
Query: 204 F 204
Sbjct: 86 L 86
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 54.8 bits (132), Expect = 7e-09
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P ++L+DE SALD I++ + + + T I+V H +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMK 209
Query: 122 TIIH-ADEILVMHAGEIVERGS 142
+D + +G IVE +
Sbjct: 210 QAKKVSDRVAFFQSGRIVEYNT 231
Score = 31.3 bits (71), Expect = 0.39
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKTVSQ--ASLRQAIGVVPQDTV 202
+G SG GKST +R R D G++ ID ++ +V LR +G+V Q
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96
Query: 203 LFNNSI 208
F SI
Sbjct: 97 PFPKSI 102
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 55.5 bits (134), Expect = 8e-09
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
SGG++QR+AIAR L+ P +++LDE TS+LD + I + L + + ++H L
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 121 STI---IHADEILVMHAGEIVERGS 142
+ H +++V+ GE+VE+G
Sbjct: 487 HVVRALCH--QVIVLRQGEVVEQGD 509
Score = 53.9 bits (130), Expect = 3e-08
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
LSGGE+QRV IA LL P++++ DE T+ALD + I L + + + + H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
LS + AD + VM G VE+
Sbjct: 217 LSIVRKLADRVAVMQNGRCVEQNR 240
Score = 32.8 bits (75), Expect = 0.22
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQD 200
+L VG+SG+GKST L R + + G+I+ D Q + +++ L R I VV QD
Sbjct: 314 TLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD 370
Score = 29.7 bits (67), Expect = 1.7
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 21 PMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIA-RTLL 77
P+L + +V FR R ++ ++S + AG+TLAL+ SG K A++ LL
Sbjct: 4 PLLAIENLSVAFRQ----QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59
Query: 78 KAPQIV 83
+P +V
Sbjct: 60 PSPPVV 65
Score = 27.7 bits (62), Expect = 7.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 15 IDIPQAPMLCVAQGAVEF---RNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQR 69
+ P +P+L V Q V F + + ++KNISFT+ G+TL L+ SG K
Sbjct: 268 LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327
Query: 70 VAIA 73
+A
Sbjct: 328 TGLA 331
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 54.5 bits (132), Expect = 8e-09
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTII 115
SGG +QR+ IAR L+ P++V +DE T LD + R + L +I
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-----LAVVI 207
Query: 116 VAHRLSTI-IHADEILVMHAGEIVERG 141
V H L+ + A +LVM G +VE G
Sbjct: 208 VTHDLAVARLLAHRLLVMKQGRVVESG 234
Score = 27.6 bits (62), Expect = 7.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 150 VGQSGAGKSTIIRLL 164
VG+SG+GK+T++ L
Sbjct: 38 VGESGSGKTTLLNAL 52
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 54.8 bits (132), Expect = 8e-09
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGG+ +RVAIA L P+I++LDE T+ LD K + + + ++ S TI+ V H +
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 121 STII-HADEILVMHAGEIVERGS---LF--VSLLQVGQSGAGKST 159
+ +AD + V+ G++V G +F V L+ Q G K T
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVPKIT 250
Score = 35.1 bits (81), Expect = 0.025
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ----ASLRQAIGVVPQ 199
+G +G+GKSTI++LL + G + +D+ I + S+ +R+ +G+V Q
Sbjct: 39 IGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 54.7 bits (132), Expect = 9e-09
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P I+L+DE SALD + ++ + + + T IIV H +
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQ 223
Query: 122 TIIHA-DEILVMHAGEIVE 139
A D + G+++E
Sbjct: 224 QAARASDYTAFFYLGDLIE 242
Score = 30.5 bits (69), Expect = 0.81
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG+GKST +R L R D +G I +I K ++ +R+ IG+V Q
Sbjct: 52 IGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111
Query: 203 LFNNSI 208
F SI
Sbjct: 112 PFAKSI 117
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 54.4 bits (131), Expect = 9e-09
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P+++L+DE SALD + I+ ++ + T IIV H +
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQ 211
Query: 122 TIIHADEILVMHAGEIVERGS 142
++ E+ E G
Sbjct: 212 QAARVSDMTAFFNVELTEGGG 232
Score = 35.9 bits (83), Expect = 0.014
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKSTI+R R D + G + +N+ V +R+ IG+V Q
Sbjct: 42 IGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101
Query: 203 LFNNSIK 209
F SI
Sbjct: 102 PFPKSIY 108
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 55.5 bits (134), Expect = 9e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
+LSGGEKQR+A+AR PQ +LDE TSA+ E + T V+HR
Sbjct: 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639
Query: 121 STIIHADEILVM 132
S + + +L M
Sbjct: 640 SLWKYHEYLLYM 651
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.3 bits (130), Expect = 1e-08
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + +P ++L+DE SALD + ++ ++ + T +IV H +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQ 206
Query: 122 TIIH-ADEILVMHAGEIVE 139
+D+ + GE+VE
Sbjct: 207 QAARVSDKTAFFYMGEMVE 225
Score = 40.0 bits (93), Expect = 7e-04
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +RL R D+ G+I ID +NI K V LR+ +G+V Q
Sbjct: 35 IGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94
Query: 203 LFNNSI 208
F SI
Sbjct: 95 PFPKSI 100
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 54.3 bits (131), Expect = 1e-08
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++QRV IAR L PQ++LLDE ALD T +Q+ L ++ + +++ H
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
Query: 120 L-STIIHADEILVMH--AGEIVERGSL 143
+ + A E++++ G +VER L
Sbjct: 189 IEEAVFMATELVLLSPGPGRVVERLPL 215
Score = 30.1 bits (68), Expect = 1.1
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E G L V L G SG GK+T++ L+ F + G I +D + ++ GVV
Sbjct: 24 LESGELLVVL---GPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-----GVV 75
Query: 198 PQDTVL 203
Q+ L
Sbjct: 76 FQNEGL 81
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 54.2 bits (131), Expect = 1e-08
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++QR IA L + VLLDE + LD K I L R+ +T ++V H
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195
Query: 120 LS-TIIHADEILVMHAGEIVERGS 142
++ ++D I+ + G++V++GS
Sbjct: 196 INFASCYSDHIVALKNGKVVKQGS 219
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +GAGKST++ ++ R +SG+I ID + + L + + ++ Q+
Sbjct: 33 IGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 54.0 bits (130), Expect = 1e-08
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++L+DE SALD + I+ ++ + A T IIV H +
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQ 209
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D + G+++E G
Sbjct: 210 QAARVSDVTAFFYMGKLIEVG 230
Score = 39.4 bits (92), Expect = 0.001
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D+ G+I +D +NI V LR+ +G+V Q
Sbjct: 38 IGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97
Query: 203 LFNNSI 208
F SI
Sbjct: 98 PFPKSI 103
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 54.2 bits (130), Expect = 1e-08
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 57 KTLAL-LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
K+ AL LSGG++QR+ IARTL P+I+L DE TSALD + I+ + + T +I
Sbjct: 149 KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVI 208
Query: 116 VAHRLSTIIH-ADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRF 167
V H + +D GE++E F Q+ + KST + RF
Sbjct: 209 VTHNMQQAARISDYTGFFLMGELIE----FGQTRQIFHNPREKSTEDYITGRF 257
Score = 35.4 bits (81), Expect = 0.022
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST IR L R D+ G + I+ ++I V LR+ +G+V Q
Sbjct: 44 IGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103
Query: 203 LFNNSI 208
F SI
Sbjct: 104 PFPMSI 109
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 53.2 bits (128), Expect = 1e-08
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
LSGGEK+RVAIA + P ++LLDE T+ LD + + L R+ A T++++
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIS 183
Score = 29.7 bits (67), Expect = 1.1
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAI 194
ERG L +G +GAGKST++ L +SG + ID + + S+ L RQ +
Sbjct: 15 AERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YSRKGLLERRQRV 70
Query: 195 GVVPQD 200
G+V QD
Sbjct: 71 GLVFQD 76
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 53.3 bits (128), Expect = 2e-08
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGGE+QRVAIAR L+ P++VL DE T LD + +I L + + T ++V H
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVERGSL 143
L L M G + SL
Sbjct: 206 LQLAKRMSRQLEMRDGRLTAELSL 229
Score = 31.7 bits (72), Expect = 0.31
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS---QASLR-QAIGVVPQ 199
VG SG+GKST++ LL SGD+ + Q + +S +A LR Q +G + Q
Sbjct: 41 VGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ 94
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 52.7 bits (127), Expect = 2e-08
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALDTKTERNIQSALNR-VCA 109
+ G+ L+ LSGGE QRV +A L P + +LDE ++ L + + + +
Sbjct: 79 LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL 138
Query: 110 SRTTIIVAHRLSTIIHADEILVM------HAGEIVERG 141
T I++ H L + AD I+ G++V G
Sbjct: 139 GNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.9 bits (127), Expect = 3e-08
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+I+L+DE T+ +D I+ L + T ++V H +
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+D + ++ G+++E G
Sbjct: 210 QAARVSDYVAFLYLGKLIEVG 230
Score = 27.5 bits (61), Expect = 7.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKT--VSQASLRQAIGVVPQ 199
+G SG GKST++R R ++ G++ + +NI + V +R+ +G+V Q
Sbjct: 36 MGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQ 92
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 53.0 bits (128), Expect = 3e-08
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAH--R 119
SGGEK+R I + L P++ +LDE S LD + + +NR+ R+ +I+ H R
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
Query: 120 LSTIIHADEILVMHAGEIVERGSL 143
L I D + V+ G IV+ G +
Sbjct: 206 LLNYIKPDYVHVLLDGRIVKSGDV 229
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 52.7 bits (127), Expect = 3e-08
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
+L I + ALLS G+KQ + I L + P+++LLDE + + L
Sbjct: 131 LLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 105 NRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSL 143
+ + ++V H + + AD++ V+H G ++ GSL
Sbjct: 191 KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 53.7 bits (129), Expect = 4e-08
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG +QRV IA L P +++ DE T+ALD + I + + S I + H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
+ + AD +LVM+ GE VE GS+
Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSV 253
Score = 44.5 bits (105), Expect = 4e-05
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRL 120
SGG++QR+ IAR L P++++ DEA SALD I + L + + ++H +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524
Query: 121 STIIH-ADEILVMHAGEIVERG 141
+ + + + VM+ G+IVE G
Sbjct: 525 AVVERISHRVAVMYLGQIVEIG 546
Score = 40.6 bits (95), Expect = 6e-04
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA---SLRQAIGVVPQD 200
+L VG+SG+GKST R L R + + G+I + Q I T+S +LR+ I + QD
Sbjct: 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 52.6 bits (127), Expect = 4e-08
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 62 LSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
LSGGE QRV +A +L+ A Q++LLDE ++LD + + L+ +C +
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 115 IVA-HRLS-TIIHADEILVMHAGEIVERGS 142
+++ H L+ T+ HAD + ++ G+++ G
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
Score = 28.0 bits (63), Expect = 5.4
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 134 AGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDV--ESGDIFIDNQNIKTVSQASL 190
AGEI+ VG +GAGKST LL R + SG I Q ++ S A L
Sbjct: 21 AGEILH---------LVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAEL 67
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 52.8 bits (127), Expect = 4e-08
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 42 ERAI--LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN 99
ERA L+ A + + SGG ++R+ IA +L+ P ++ LDE T+ LD +T R
Sbjct: 103 ERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162
Query: 100 IQSALNRVCASRTTIIV-------AHRLSTIIHADEILVMHAGEIVERGS 142
I + + TI++ A +L D I ++ G I+ G+
Sbjct: 163 IWDYIRALKEEGVTILLTTHYMEEADKL-----CDRIAIIDHGRIIAEGT 207
Score = 40.1 bits (94), Expect = 6e-04
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGV 196
V G +F L G +GAGK+T IR+L SG + ++ V + +R++IG+
Sbjct: 16 VREGEVFGFL---GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--VREPRKVRRSIGI 70
Query: 197 VPQD 200
VPQ
Sbjct: 71 VPQY 74
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 52.5 bits (126), Expect = 5e-08
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
G++ LSGGE QRV +A +L+ A Q++LLDE ++LD + + L+ +C
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 109 AS-RTTIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
++ +H L+ T+ HA ++ G+++ G
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 53.2 bits (129), Expect = 5e-08
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LSGGE++RVA+ R LL+ P ++LLDE T+ LD
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 44.3 bits (106), Expect = 4e-05
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 12/80 (15%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTI 114
K + +LSGGE+ R+ +A+TL + ++LLDE T+ LD +T R ++ AL CA +
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCA----V 496
Query: 115 IVAH------RLSTIIHADE 128
+++H R++T I A E
Sbjct: 497 VISHDRWFLDRIATHILAFE 516
Score = 29.7 bits (68), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 15 IDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAG 56
I IP P L +E N+S S+ +R ++ ++SF++P G
Sbjct: 312 IFIPPGPRL--GDKVIEAENLSKSF-GDRLLIDDLSFSLPPG 350
Score = 29.7 bits (68), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 232 IDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAG 273
I IP P L +E N+S S+ +R ++ ++SF++P G
Sbjct: 312 IFIPPGPRL--GDKVIEAENLSKSF-GDRLLIDDLSFSLPPG 350
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 52.5 bits (126), Expect = 5e-08
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGG++QR+ IAR L P ++L+DE TSALD + ++ + + + IIV H +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNM 226
Score = 35.6 bits (82), Expect = 0.021
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST I+ L R ++ +G I +QNI K+ S LR +G+V Q
Sbjct: 56 IGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115
Query: 203 LFNNSI 208
F SI
Sbjct: 116 PFPKSI 121
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 53.1 bits (128), Expect = 6e-08
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE QRVAIA L + + LLDE ++ LD + + + R + T ++V H
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515
Query: 120 LSTIIH-ADEILV 131
+ I + +D ++V
Sbjct: 516 IYMIDYVSDRLIV 528
Score = 48.8 bits (117), Expect = 1e-06
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGGE QRVAIA LL+ + DE +S LD + N + + + I+V H L
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273
Query: 121 STI 123
+ +
Sbjct: 274 AVL 276
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 51.9 bits (124), Expect = 7e-08
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGG++QR+ IART+ P ++L+DE TSALD + I+ + + T +IV H +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
Score = 38.0 bits (88), Expect = 0.002
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D+ G++ +D +NI K V LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95
Query: 203 LFNNSI 208
F SI
Sbjct: 96 PFPMSI 101
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 53.0 bits (128), Expect = 7e-08
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
LSGGE++RVA+ R LL P ++LLDE T+ LD ++
Sbjct: 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196
Score = 48.0 bits (115), Expect = 2e-06
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 12/80 (15%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTI 114
K + LSGGE+ RV +A+TL ++LLDE T+ LD +T R ++ AL CA +
Sbjct: 439 KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCA----V 494
Query: 115 IVAH------RLSTIIHADE 128
+++H R++T I A E
Sbjct: 495 VISHDRWFLDRIATHILAFE 514
Score = 28.7 bits (65), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 15 IDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAG 56
I IP P L +E N+S + ++ ++ ++SF +P G
Sbjct: 310 IYIPPGPRL--GDKVIEAENLSKGFG-DKLLIDDLSFKLPPG 348
Score = 28.7 bits (65), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 232 IDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAG 273
I IP P L +E N+S + ++ ++ ++SF +P G
Sbjct: 310 IYIPPGPRL--GDKVIEAENLSKGFG-DKLLIDDLSFKLPPG 348
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 51.7 bits (125), Expect = 7e-08
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE+Q +AIAR L+ P+++LLDE + L K I A+ + T ++V
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ AD V+ G IV G+
Sbjct: 197 ARFALEIADRGYVLENGRIVLSGT 220
Score = 40.1 bits (95), Expect = 5e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
VERG + V+LL G++GAGK+T+++ + SG I D ++I + R I
Sbjct: 26 VERGEI-VALL--GRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82
Query: 197 VPQ 199
VP+
Sbjct: 83 VPE 85
Score = 30.1 bits (69), Expect = 0.99
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 20 APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
APML E N+S Y + L+ +S V G+ +ALL
Sbjct: 1 APML-------EVENLSAGYG-KIQALRGVSLEVERGEIVALL 35
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.8 bits (124), Expect = 8e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 15/94 (15%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT 113
PAGK LSGG++QR+ IAR L P+++L DE T+ LD + I+S + T
Sbjct: 143 PAGK----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTI 198
Query: 114 IIVAH------RLSTIIHADEILVMHAGEIVERG 141
++V H R+S D + ++ G+IVE G
Sbjct: 199 VLVTHFPQQAARIS-----DYVAFLYKGQIVEWG 227
Score = 34.9 bits (80), Expect = 0.033
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
+G SG+GKST++R+ R ++ SG++++D Q+I + LR+ + +V Q
Sbjct: 35 MGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQ 89
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 52.0 bits (124), Expect = 8e-08
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P+++L+DE TSALD I+ + + + IIV H ++
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMA 285
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+DE + + G I E G
Sbjct: 286 QAQRISDETVFFYQGWIEEAG 306
Score = 33.5 bits (76), Expect = 0.10
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFI--DNQNIKTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L + D+ G+I+ N K +S LR IG+V Q
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173
Query: 203 LFNNSI 208
F SI
Sbjct: 174 PFEMSI 179
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 51.6 bits (124), Expect = 9e-08
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LSGG++QRVAIAR L P+++L DE TSALD
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
Score = 38.2 bits (89), Expect = 0.003
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK--TVSQ 187
L + GE+V + +G SG+GKST++R + + ++ SGD+ +D + V +
Sbjct: 22 LNIDQGEVV---------VIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 188 ASLRQAIGVVPQDTVLF 204
+RQ G+V Q LF
Sbjct: 73 RLIRQEAGMVFQQFYLF 89
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 52.4 bits (126), Expect = 9e-08
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 42 ERAILK------NISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95
E A+L+ NI F A + LSGG +Q+V IA+ L +PQ++++DE T +D
Sbjct: 379 ENAVLERYRRALNIKFN-HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
Query: 96 TERNIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEI 137
+I + + A ++ ++ L I AD +LVMH GEI
Sbjct: 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
Score = 37.7 bits (88), Expect = 0.005
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 17 IPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGK------------------- 57
+PQ P+L F N+S + +NI F +P +
Sbjct: 91 VPQEPLL--------FPNLS--------VKENILFGLPKRQASMQKMKQLLAALGCQLDL 134
Query: 58 --TLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
+ L ++Q V I R L++ +I++LDE T++L + S + + A I+
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194
Query: 116 -VAHRLSTIIH-ADEILVMHAGEIVERGSL 143
++H+L I AD I VM G I G
Sbjct: 195 FISHKLPEIRQLADRISVMRDGTIALSGKT 224
Score = 35.4 bits (82), Expect = 0.027
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
+HAGE+ +LL G +GAGKST+++++ +SG + I ++ A
Sbjct: 32 FTLHAGEVH-------ALL--GGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 190 LRQ-AIGVVPQDTVLFNN-SIK-----AIQKNFVDMENMFDLLQE 227
Q I +VPQ+ +LF N S+K + K M+ M LL
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAA 127
Score = 28.9 bits (65), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALLSG 64
+ R++S Y+ +LK I FT+ AG+ ALL G
Sbjct: 12 LCARSISKQYSGVE-VLKGIDFTLHAGEVHALLGG 45
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 51.3 bits (123), Expect = 1e-07
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL- 120
LSGG++QR+ IAR + P+++L+DE SALD I+ + + T +IV H +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQ 240
Query: 121 -STIIHADEILVMHAGEIVE 139
+ I + + GE+VE
Sbjct: 241 QAARISDKTAVFLTGGELVE 260
Score = 33.2 bits (76), Expect = 0.10
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 150 VGQSGAGKSTIIRLLFRFYD------VESGDIFIDNQNI--KTVSQASLRQAIGVVPQDT 201
+G SG GKST +R + R D VE G++ +N+ V +LR+ IG+V Q
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVE-GELTFRGKNVYDADVDPVALRRRIGMVFQKP 129
Query: 202 VLFNNSI 208
F SI
Sbjct: 130 NPFPKSI 136
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 51.4 bits (123), Expect = 1e-07
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
+LS G KQ + +AR++L +I+LLDE ++ LD T + I+ L + A T I+ HR+
Sbjct: 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI 197
Query: 121 STIIHADEILVMHAGEIVERGSL 143
++ LV+ ++ + S+
Sbjct: 198 EAMLECQRFLVIEENKVRQYDSI 220
Score = 46.4 bits (110), Expect = 6e-06
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
V LL G++G+GKST++ R + E GDI ID + +V R+A GV+PQ +F
Sbjct: 33 VGLL--GRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIF 89
Query: 205 NNSIK 209
+ + +
Sbjct: 90 SGTFR 94
Score = 30.6 bits (69), Expect = 0.83
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 28 GAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLALL 62
G + ++++ YT A+L+NISF++ G+ + LL
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLL 36
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 51.0 bits (123), Expect = 1e-07
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAH-- 118
SGGEK+R I + LL P++ +LDE S LD + + +N + R +I+ H
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 119 RLSTIIHADEILVMHAGEIVERG 141
RL I D++ V++ G IV+ G
Sbjct: 205 RLLDYIKPDKVHVLYDGRIVKSG 227
Score = 32.6 bits (75), Expect = 0.18
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 151 GQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNIKTVS 186
G +G+GKST+ + Y+V G+I D ++I +S
Sbjct: 37 GPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 51.4 bits (123), Expect = 1e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++L+DE SALD I+ + + T ++V H +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260
Query: 122 TIIH-ADEILV-MHAGEIVERG 141
+D+ V + GE+VE
Sbjct: 261 QAARISDQTAVFLTGGELVEYD 282
Score = 33.3 bits (76), Expect = 0.11
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 150 VGQSGAGKSTIIRLLFRFYD------------VESGDIFIDNQNIKTVSQASLRQAIGVV 197
+G SG GKST +R L R D ++ DI+ D N+ LR+ +G+V
Sbjct: 77 IGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL-----VELRKRVGMV 131
Query: 198 PQDTVLFNNSIK 209
Q F SI+
Sbjct: 132 FQSPNPFPKSIR 143
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.8 bits (121), Expect = 1e-07
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR L P+++L+DE SALD + I+ + + + T IV H +
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQ 207
Query: 122 TIIHA-DEILVMHAGEIVERG 141
A D + G++VE G
Sbjct: 208 QAARASDWTGFLLTGDLVEYG 228
Score = 40.0 bits (93), Expect = 6e-04
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNIKT--VSQASLRQAIGVVPQDTV 202
+G SG GKST++R L R D+ S G + +DN+NI + + +LR+ +G+V Q
Sbjct: 36 IGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95
Query: 203 LFNNSI 208
F SI
Sbjct: 96 PFPKSI 101
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 50.9 bits (122), Expect = 1e-07
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTII 115
SGG +QR+ IAR L+ P++V +DE T LD + R + L +I
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG-----LAVVI 207
Query: 116 VAHRLSTI-IHADEILVMHAGEIVERG 141
V H L+ + AD ++VM G++VE G
Sbjct: 208 VTHDLAVARLLADRLMVMKQGQVVESG 234
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 51.1 bits (122), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGG+ Q VA+A L P+ ++ DE TS LD + + + ++ TI+ + H L
Sbjct: 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196
Query: 121 STIIHADEILVMHAGEIVERGS 142
+ AD I+VM G+IV G
Sbjct: 197 EELHDADRIIVMDRGKIVLEGE 218
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 50.8 bits (122), Expect = 2e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAH--R 119
SGGEK+R I + L ++ +LDE S LD + I +N++ S +II + H R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
L I D + VM G+I++ G
Sbjct: 213 LLDYIKPDYVHVMQNGKIIKTGD 235
Score = 28.5 bits (64), Expect = 3.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 151 GQSGAGKSTIIRLLFRF--YDVESGDIFIDNQNI 182
G +G+GKST+ +++ Y + GDI ++I
Sbjct: 40 GPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 51.3 bits (124), Expect = 2e-07
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER-NIQSALNRVCASRTTIIVAHRL 120
LSGGE QRVAIA LL+ DE TS LD + +R N+ + + + ++V H L
Sbjct: 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHDL 271
Score = 50.6 bits (122), Expect = 4e-07
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE QRVAIA L + + LLDE ++ LD + + A+ R+ R T ++V H
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
Query: 120 LSTI-IHADEILV 131
+ I +D ++V
Sbjct: 514 IYMIDYISDRLMV 526
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 50.5 bits (121), Expect = 2e-07
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGG++QR+ IAR + P ++L+DE SALD + I+ +N + T +IV H +
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
Score = 37.4 bits (87), Expect = 0.005
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQ 199
+G SG GKST++R L R ++V G++ +D +++ V ++R+ IG+V Q
Sbjct: 36 IGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQ 92
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 50.0 bits (120), Expect = 2e-07
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVA-H 118
+SGGE++RV+IA L+ ++ D +T LD+ T I + R A +TT V+ +
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI-RTMADVLKTTTFVSLY 177
Query: 119 RLSTIIHA--DEILVMHAGEIV 138
+ S I+ D++LV++ G +
Sbjct: 178 QASDEIYDLFDKVLVLYEGRQI 199
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 50.5 bits (121), Expect = 2e-07
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + +P+++L+DE SALD ++ ++ + + T +IV H +
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQ 223
Query: 122 TIIHADEILVM-HAGEIVERGS 142
+ H G +VE G
Sbjct: 224 QAARVSQRTAFFHLGNLVEVGD 245
Score = 37.8 bits (88), Expect = 0.004
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD-VES----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST +R L R D ++ G I +D ++I + LR +G+V Q
Sbjct: 51 IGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110
Query: 203 LFNNSI 208
F SI
Sbjct: 111 PFPKSI 116
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 50.3 bits (120), Expect = 3e-07
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG+K+RV +AR + + Q++LLDE + +D KTE I S L + +T ++ H L
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL 202
Query: 121 STIIHADEILVMHAGEIVERG 141
++ + VM G ++ G
Sbjct: 203 GSVTEFCDYTVMVKGTVLASG 223
Score = 32.5 bits (74), Expect = 0.17
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
VG +G+GKST+ + L F + SG I I Q QA + + VPQ
Sbjct: 39 VGVNGSGKSTLFKALMGFVRLASGKISILGQ---PTRQALQKNLVAYVPQ 85
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 49.8 bits (119), Expect = 3e-07
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRVCASRTTIIV 116
A LSGGE+QRVA+AR P ++ DE T LD +T I +LNR + T I+V
Sbjct: 145 AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-TLILV 203
Query: 117 AH 118
H
Sbjct: 204 TH 205
Score = 32.1 bits (73), Expect = 0.20
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 114 IIVAHRLSTIIHADE--ILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVE 171
I+ H L + E + ++ E+V + ++L +G+SG+GKST++ +L D
Sbjct: 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIAL--IGESGSGKSTLLAILAGLDDGS 63
Query: 172 SGDIFIDNQNIKTVSQ---ASLR-QAIGVVPQDTVL 203
SG++ + Q + + + A LR + +G V Q +L
Sbjct: 64 SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 50.1 bits (120), Expect = 3e-07
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 18/114 (15%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-----CASRTTIIV 116
LSGGE QRV +AR LL PQ+++LDE T +D + + ++++ CA ++V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA---VLMV 177
Query: 117 AHRLSTII-HADEILVMH-------AGEIVERGSLFVSLLQVGQSGAGKSTIIR 162
+H L ++ DE+L ++ E+V F+S+ G GA + I R
Sbjct: 178 SHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMF--GPRGAEQLGIYR 229
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALLS 63
V NVS S+ +R +L ++S + GK L LL
Sbjct: 5 VSLENVSVSFG-QRRVLSDVSLELKPGKILTLLG 37
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
L +G +GAGKST++R++ + G I LR IG VPQ
Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------KRNGKLR--IGYVPQ 74
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 50.2 bits (120), Expect = 3e-07
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LS G+K+RVAIA L+ P++++LDE T+ LD I L + T II H
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 120 LSTI-IHADEILVMHAGEIVERGS 142
+ + ++ D + VM G ++ +G+
Sbjct: 202 IDIVPLYCDNVFVMKEGRVILQGN 225
Score = 36.0 bits (83), Expect = 0.014
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQ--DTVLFN 205
+G +GAGKST+ + L SG I D + I + LR+++G+V Q D LF+
Sbjct: 38 LGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97
Query: 206 NSI 208
S+
Sbjct: 98 ASV 100
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 49.6 bits (119), Expect = 4e-07
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTT 113
A + L LSGG++QR +A L + +VLLDE T+ LD + + + + +T
Sbjct: 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTV 191
Query: 114 IIVAHRLSTII-HADEILVMHAGEIVERGS 142
+ V H L+ + D ++V+ G ++ +G+
Sbjct: 192 VTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
Score = 36.1 bits (84), Expect = 0.010
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
+G +G GKST+++ R +SG +F+ ++ I +S L + + ++PQ
Sbjct: 34 IGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83
Score = 28.4 bits (64), Expect = 3.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 34 NVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKA 79
N++ Y +R IL ++S ++P GK AL+ +G K TLLK
Sbjct: 7 NLTVGYGTKR-ILNDLSLSLPTGKITALIGPNGCGKS------TLLKC 47
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 49.8 bits (119), Expect = 4e-07
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE+QR IA + + + +LLDE TSALD + ++ + ++R+ R T I V H
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
++ + D ++ + GE++ +G+
Sbjct: 208 INMAARYCDYLVALRGGEMIAQGT 231
Score = 36.3 bits (84), Expect = 0.011
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
+G +G+GKST++++L R G+I +D Q +++ S + + + +PQ
Sbjct: 43 IGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92
Score = 31.3 bits (71), Expect = 0.47
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 18/74 (24%)
Query: 33 RNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLK---------APQ 81
RNVSF P R +L +S T PAGK L+ +G K TLLK +
Sbjct: 15 RNVSFR-VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKS------TLLKMLGRHQPPSEGE 67
Query: 82 IVLLDEATSALDTK 95
I+L + + +K
Sbjct: 68 ILLDAQPLESWSSK 81
Score = 28.2 bits (63), Expect = 4.6
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 250 RNVSFSYTPERAILKNISFTVPAGK 274
RNVSF P R +L +S T PAGK
Sbjct: 15 RNVSFR-VPGRTLLHPLSLTFPAGK 38
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 48.8 bits (117), Expect = 5e-07
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LS G +Q+V ++ P++++LDE S LD ++ + + + T+I H++
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188
Query: 121 STIIH-ADEILVMHAGEIVERG 141
+ D +L+++ G V G
Sbjct: 189 ELVEELCDRVLLLNKGRAVLYG 210
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE+G +F LL G +GAGK+T IR++ +SG++ D + + + R IG +
Sbjct: 23 VEKGEIF-GLL--GPNGAGKTTTIRMILGIILPDSGEVLFDGKPL----DIAARNRIGYL 75
Query: 198 PQDTVLF 204
P++ L+
Sbjct: 76 PEERGLY 82
Score = 31.1 bits (71), Expect = 0.48
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E NV+ + A+ +ISF+V G+ LL
Sbjct: 1 LEVENVTKRFGRVTAL-DDISFSVEKGEIFGLL 32
Score = 26.9 bits (60), Expect = 9.5
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+E NV+ + A+ +ISF+V G+
Sbjct: 1 LEVENVTKRFGRVTAL-DDISFSVEKGEIFG 30
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 49.4 bits (118), Expect = 7e-07
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT--IIVAHR 119
LSGG QRV IA + P++++ DE T+ALD + I L + +++ H
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
L+ + A +I+VM+AG++VE G
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETG 236
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 48.5 bits (116), Expect = 8e-07
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIV-AHR 119
LS G++ R IA LL P+I+ LDE T LD + NI++ L R TT+++ +H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ I A +LV+ G ++ G
Sbjct: 214 MKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 49.4 bits (118), Expect = 8e-07
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
+ LSGG +Q+ +A+ LL P++++LDE T +D + I +N++ IIV +
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460
Query: 118 HRLSTIIH-ADEILVMHAGEI 137
L+ ++ +D +LV+ G++
Sbjct: 461 SELAEVLGLSDRVLVIGEGKL 481
Score = 33.3 bits (76), Expect = 0.13
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV----CA 109
+ + GG++Q V IA+ L K ++++LDE +S+L TE+ + L+ +
Sbjct: 134 NVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL---TEKETEILLDIIRDLKAH 190
Query: 110 SRTTIIVAHRLSTIIH-ADEILVMHAGEIV 138
+ ++H+L+ + D I V+ G+ V
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
Score = 29.4 bits (66), Expect = 2.5
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFY--DVESGDIFIDNQNIKTVS- 186
L + GE V L G++GAGKST++++L Y G+I+ +K +
Sbjct: 22 LEVRPGECV-------GL--CGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 187 QASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMF 222
+ + R I ++ Q+ L EN+F
Sbjct: 73 RDTERAGIVIIHQELTLV--------PELSVAENIF 100
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 48.9 bits (116), Expect = 9e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGG++QR+ IAR + P ++L+DE SALD + R ++ + T I+V H +
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
Score = 32.3 bits (73), Expect = 0.21
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDV-----ESGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST++R R D+ G + ++NI ++ LR+ +G+V Q
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111
Query: 203 LFNNSI 208
F SI
Sbjct: 112 PFPKSI 117
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 48.2 bits (115), Expect = 9e-07
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
+L + T K S G KQR+ IA LL P++++LDE T+ LD + ++ +
Sbjct: 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167
Query: 105 NRVCASRTTIIV-AHRLSTIIH-ADEILVMHAGEIVERGSL 143
T+I+ +H LS + AD I ++ G + +G +
Sbjct: 168 RSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKI 208
Score = 29.3 bits (66), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
V + S++ LL G +GAGKST+++++ SG+I D
Sbjct: 23 VPKNSVY-GLL--GPNGAGKSTLLKMITGILRPTSGEIIFDG 61
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.5 bits (115), Expect = 1e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+ IAR + P+++LLDE SALD R ++ + + T +V H +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209
Query: 122 TIIHADEILVMHAGEIVERG 141
I + + +I +
Sbjct: 210 QAIRVADTTAFFSVDISQGT 229
Score = 30.4 bits (68), Expect = 0.94
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST++R L R D+ G + Q++ K V +R+ IG+V Q
Sbjct: 40 IGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99
Query: 203 LFNNSI 208
F+ SI
Sbjct: 100 PFSMSI 105
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 48.6 bits (116), Expect = 1e-06
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAHR 119
L+ GE Q+V IA L P++++ DE T+A++ T+ I L R+ + T I ++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 120 LSTIIH-ADEILVMHAGEIVE 139
L + AD+I V++ G+ VE
Sbjct: 219 LQMLSQWADKINVLYCGQTVE 239
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 48.5 bits (116), Expect = 1e-06
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD---TKTERNIQSALNRVCASRTTIIVAH 118
LSGG+K+RVA+A L P ++ DE T+ LD K I LN+ +T I+V H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTH 223
Query: 119 RLSTIIH-ADEILVMHAGEIVERG 141
L ++ + G+I++ G
Sbjct: 224 DLDNVLEWTKRTIFFKDGKIIKDG 247
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 48.9 bits (117), Expect = 1e-06
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VC 108
+ G+ LSGGE QR+ +A+ L K + +LDE T+ L + + L R V
Sbjct: 821 IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD 880
Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGS 142
T +++ H L I AD I+ + G +V G+
Sbjct: 881 KGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920
Score = 45.0 bits (107), Expect = 2e-05
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 25/134 (18%)
Query: 34 NVSFSY-TPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATS 90
+V Y + RA LSGGE QR+ +A + VL LDE +
Sbjct: 474 DVGLDYLSLSRAA--------------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 519
Query: 91 ALDTK-TERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
L + R I + T I+V H TI AD ++ + H GE+V G+
Sbjct: 520 GLHQRDNRRLINTLKRLRDLGNTLIVVEHDEDTIRAADYVIDIGPGAGEHGGEVVASGTP 579
Query: 144 FVSLLQVGQSGAGK 157
+L S G+
Sbjct: 580 -EEILANPDSLTGQ 592
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 48.0 bits (115), Expect = 1e-06
Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LS G+++R+ IAR L P+++LLDE + L+ + + + + T +++ H
Sbjct: 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ ++ AD I+V++ GE++ G+
Sbjct: 210 MKLVMGLADRIVVLNYGEVIAEGT 233
Score = 34.1 bits (79), Expect = 0.051
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L + GEIV +G +GAGK+T+ L+ FY SG + ++I +
Sbjct: 25 LEVRPGEIV---------GLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PH 74
Query: 190 LRQAIGVV 197
+G+
Sbjct: 75 RIARLGIA 82
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 48.8 bits (117), Expect = 2e-06
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGG +Q+ +A+ LL P+I++LDE T +D + I +N++ II ++ L
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465
Query: 121 STIIH-ADEILVMHAGEIVERGSL 143
++ +D +LVMH G++ +G L
Sbjct: 466 PEVLGLSDRVLVMHEGKL--KGDL 487
Score = 37.6 bits (88), Expect = 0.005
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR----TTIIVA 117
L G++Q V IA+ L K ++++LDE T++L TE L+ + + I ++
Sbjct: 144 LGLGQQQLVEIAKALNKQARLLILDEPTASL---TESETAVLLDIIRDLKAHGIACIYIS 200
Query: 118 HRLSTIIH-ADEILVMHAGE 136
H+L+ + +D I V+ G
Sbjct: 201 HKLNEVKAISDTICVIRDGR 220
Score = 33.4 bits (77), Expect = 0.12
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 19/86 (22%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVES--GDIFIDNQ-----NI 182
L + AGEIV SL G++GAGKST++++L Y + G+I + + NI
Sbjct: 26 LKVRAGEIV-------SL--CGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI 76
Query: 183 KTVSQAS---LRQAIGVVPQDTVLFN 205
+ +A + Q + +V + +VL N
Sbjct: 77 RDTERAGIAIIHQELALVKELSVLEN 102
Score = 30.3 bits (69), Expect = 1.1
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 132 MHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQ--NIKTVSQA 188
+ GEI L ++ G GAG++ +++ LF Y G+IFID + I+ QA
Sbjct: 285 LRRGEI-----LGIA----GLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335
Query: 189 SLRQAIGVVPQD 200
+ Q I +VP+D
Sbjct: 336 -IAQGIAMVPED 346
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 47.6 bits (114), Expect = 2e-06
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQS 102
+L+ I A + LLS G+KQ + I L++ P+++LLDE + + D +TE+ +
Sbjct: 126 EVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE- 184
Query: 103 ALNRVCASRTTIIVAHRLSTIIH-ADEILVMHAGEIVERGSL 143
L + + ++V H + + AD++ V+H G ++ GSL
Sbjct: 185 LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 48.1 bits (114), Expect = 2e-06
Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--T 112
A + ++ LSGG++QRVAIAR L++ +++L DE ++LD ++ R + L + + T
Sbjct: 146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT 205
Query: 113 TIIVAHRLSTII-HADEILVMHAGEIVERGS 142
++ H++ + + + I+ + G + GS
Sbjct: 206 VVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
Score = 28.8 bits (64), Expect = 2.8
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 113 TIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLL 164
TII +L+ + + L HA ++ V+LL G SG+GKST++R L
Sbjct: 3 TIIRVEKLAKTFNQHQAL--HAVDLNIHHGEMVALL--GPSGSGKSTLLRHL 50
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 47.8 bits (113), Expect = 2e-06
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG+ +RVAIA L P++++LDE T+ LD K + + S +T ++V H +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 121 STII-HADEILVMHAGEIVERGS---LF--VSLLQVGQSGAGKST 159
+ +AD + ++ G I+ G+ +F V L+ + G K+T
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LS +++R+ I L P I+ LDE TS LD++ NI L ++ S I+ H+
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
Query: 121 STII--HADEILVMHAG 135
S I D +L++ G
Sbjct: 169 SASIFEKFDRLLLLKRG 185
Score = 31.4 bits (72), Expect = 0.33
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD--VESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 207
+G+SGAGK+T++ +L V +G+I I+ + + + +++ G V Q V N
Sbjct: 39 MGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHSPNL 94
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC--ASRTTIIVAHR 119
LSGGE QRVAIA L K I LLDE ++ LD + + R +T +V H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
Query: 120 LSTIIH-ADEILV 131
+ I + AD ++V
Sbjct: 176 IIMIDYLADRLIV 188
Score = 29.7 bits (67), Expect = 1.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 138 VERGSLFVS--LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
VE GS+ S + +G +G GK+T I++L + GDI I+ +
Sbjct: 17 VEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 47.2 bits (113), Expect = 3e-06
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
LSGGE++RV IAR L P+ +LLDE + +D +IQ + + R +I H
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ-RIIKHLKDRGIGVLITDHN 198
Query: 120 L-STIIHADEILVMHAGEIVERGS 142
+ T+ D ++ G+++ GS
Sbjct: 199 VRETLDICDRAYIISDGKVLAEGS 222
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.9 bits (111), Expect = 3e-06
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
LSGG++QR+ IAR L P+++L+DE SALD ++ ++ + + T IV H +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
Score = 32.3 bits (73), Expect = 0.19
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE-----SGDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST I+ L R ++E G + QNI ++ LR+ IG+V Q
Sbjct: 39 IGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98
Query: 203 LFNNSI 208
F SI
Sbjct: 99 PFPMSI 104
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 46.6 bits (111), Expect = 3e-06
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
A + + SGG ++R+ IAR+L+ P+++ LDE T LD +T ++ + ++
Sbjct: 125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 115 IVAHRLSTIIH--------ADEILVMHAGEIVERGS 142
I+ L+T H D + ++ G I+ G+
Sbjct: 185 IL---LTT--HYMEEAEQLCDRVAIIDHGRIIAEGT 215
Score = 38.1 bits (89), Expect = 0.002
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V RG +F LL G +GAGK+T I++L SG + ++ +R+ IG+V
Sbjct: 23 VRRGEIF-GLL--GPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRRIGIV 78
Query: 198 PQD 200
QD
Sbjct: 79 FQD 81
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.0 bits (111), Expect = 4e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASRTTIIVAHR 119
LSGG++QR+ IAR L P+++L+DE LD ++S + R+ + T +IV+H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 120 LSTI 123
L +
Sbjct: 211 LHQV 214
Score = 30.8 bits (69), Expect = 0.71
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVES-----GDIFIDNQNI--KTVSQASLRQAIGVVPQDTV 202
+G SG GKST ++ L R ++ES G + NQNI + V+ LR+ + +V
Sbjct: 39 IGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98
Query: 203 LFNNSI 208
LF S+
Sbjct: 99 LFPMSV 104
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 46.8 bits (112), Expect = 4e-06
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI-IVAHRL 120
LSGGE++RV IAR L P+ +LLDE + +D ++IQ + + + I H +
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193
Query: 121 S-TIIHADEILVMHAGEIVERGS 142
T+ D +++ G+++ G+
Sbjct: 194 RETLSITDRAYIIYEGKVLAEGT 216
Score = 38.7 bits (91), Expect = 0.001
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQ 187
L + GEIV LL G +GAGK+T ++ +SG I +D Q+I + +
Sbjct: 21 LSVKQGEIV-------GLL--GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 188 ASLRQAIGVVPQDTVLF 204
+ R IG +PQ+ +F
Sbjct: 72 RA-RLGIGYLPQEASIF 87
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 47.1 bits (112), Expect = 4e-06
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-- 116
++ LSGG K+R+ +AR L+ PQ+++LDE T+ LD I L + A TI++
Sbjct: 170 VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 229
Query: 117 -----AHRLSTIIHADEILVMHAGEIVERG 141
A RL D + V+ AG + G
Sbjct: 230 HFMEEAERL-----CDRLCVLEAGRKIAEG 254
Score = 34.4 bits (79), Expect = 0.050
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 100 IQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKST 159
I A + S +T+ + + + D+ +V V G F LL G +GAGKST
Sbjct: 26 ISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECF-GLL--GPNGAGKST 82
Query: 160 IIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGVVPQ 199
I R++ ++G I + + ++A L R IGVVPQ
Sbjct: 83 IARMILGMTSPDAGKITV--LGVPVPARARLARARIGVVPQ 121
Score = 31.0 bits (70), Expect = 0.64
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL 77
A++ VS SY ++A++ +SFTV +G+ LL + IAR +L
Sbjct: 41 AIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMIL 88
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
A SGGE+QRV IAR + I+LLDE T++LD + + A ++
Sbjct: 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206
Score = 37.0 bits (86), Expect = 0.005
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDI 175
V +S ++A E +V+H G SG+GKST++R L+ Y + G I
Sbjct: 26 VLRNVSLSVNAGECVVLH-----------------GPSGSGKSTLLRSLYANYLPDEGQI 68
Query: 176 FIDNQ 180
+ ++
Sbjct: 69 LVRHE 73
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 47.2 bits (113), Expect = 4e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 51 FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS---ALNRV 107
V +A LS GE+QRV I + L + ++++LDE T+ L T + L R+
Sbjct: 130 LPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQEADELFEILRRL 186
Query: 108 CASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 138
A TII + H+L ++ AD + V+ G++V
Sbjct: 187 AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 46.4 bits (111), Expect = 7e-06
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGVVPQDTVLFNN 206
G++GAGKST++++LF Y +SG+I +D + ++ + ++R IG+V Q +L
Sbjct: 37 GENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93
Score = 44.1 bits (105), Expect = 4e-05
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LSGG +Q++ +AR L + P +++ + T LD I L + + +++
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL--- 458
Query: 120 LSTIIH-----ADEILVMHAGEIV 138
+S + +D I V++ G IV
Sbjct: 459 ISEDLDEILELSDRIAVIYEGRIV 482
Score = 28.7 bits (65), Expect = 3.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGE 66
A+E R ++ + A ++S +V G+ ALL GE
Sbjct: 4 ALEMRGITKRFPGVVA-NDDVSLSVKKGEIHALL--GE 38
Score = 28.7 bits (65), Expect = 4.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 133 HAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 192
AGEIV G G +G G+S ++ + SG I ++ +++ R+
Sbjct: 282 RAGEIV--GI-------AGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 193 AIGV--VPQD 200
+G+ VP+D
Sbjct: 333 RLGLAYVPED 342
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 46.5 bits (111), Expect = 4e-06
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNR-VC 108
+ G+ LSGGE QR+ +A+ L K + +LDE T+ L + + L R V
Sbjct: 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD 220
Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIVERGS 142
T +++ H L I AD I+ + G++V G+
Sbjct: 221 KGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 47.2 bits (113), Expect = 5e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 62 LSGGEKQRVAIARTLLKA---PQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 117
LSGGE QRV +A+ L K + +LDE T+ L + + L+R V T I++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 118 HRLSTIIHADEILVM------HAGEIVERGS 142
H L I AD I+ + GEIV G+
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGT 913
Score = 44.5 bits (106), Expect = 4e-05
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Query: 62 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSALDTK-TERNIQSALNRVCASRT 112
LSGGE QR+ +A QI VL LDE + L + ER I++ T
Sbjct: 482 LSGGEAQRIRLAT------QIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNT 535
Query: 113 TIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
I+V H TI AD I+ + H GEIV G+
Sbjct: 536 VIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTP 572
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 46.2 bits (109), Expect = 6e-06
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LS G+K+RVAIA L+ + +LLDE T+ LD + + + R+ A II +H +
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196
Query: 121 STIIH-ADEILVMHAGEIV---ERGSLFVSLLQVGQSGAGKSTIIRL 163
I +D + V+ G+I+ G +F + Q+G + +++L
Sbjct: 197 DLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQPWLVKL 243
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 46.7 bits (111), Expect = 6e-06
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG +QRV +AR I+L+DE SALD +Q L + + +T + V+H
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHD 224
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
L + + I +M G I++ G+
Sbjct: 225 LDEALKIGNRIAIMEGGRIIQHGT 248
Score = 28.6 bits (64), Expect = 3.6
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 24/91 (26%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN----QNIKTV 185
L + GEI + +G SG+GKST++R + V G + + + ++
Sbjct: 45 LDIEEGEI---------CVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 186 SQASLR-----------QAIGVVPQDTVLFN 205
A+LR Q ++P TV N
Sbjct: 96 DAATLRRLRTHRVSMVFQQFALLPWRTVEEN 126
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 46.4 bits (110), Expect = 7e-06
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-RNIQSALNRVCASRTTIIVAHRL 120
LSGGE+QRV +AR L +A ++LLDE T++LD + R ++ V +T + H L
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL 199
Query: 121 STII-HADEILVMHAGEIVERG 141
+ DE++++ G + G
Sbjct: 200 DLAARYCDELVLLADGRVRAAG 221
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V GS V L VG +GAGK+T++R + +G + + +++ +S + + + V
Sbjct: 26 VREGS-LVGL--VGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82
Query: 198 PQDTVL-FNNSIKAI 211
PQDT L F ++ +
Sbjct: 83 PQDTSLSFEFDVRQV 97
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 46.0 bits (109), Expect = 8e-06
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII--VAHR 119
L+ GE Q+V IA L P++++ DE T++++ T+ I L+R+ + T I ++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
L I AD+I V++ G+ VE
Sbjct: 219 LQMISQWADKINVLYCGQTVESA 241
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 46.0 bits (109), Expect = 1e-05
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT-TIIVAHRL 120
LS G+K+R +A+ L + P ++L+DE + LD T + ++ + T+IV
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 121 STIIHA---DEILVMHAGEIVERGSL 143
+ +A D ++++ G++ L
Sbjct: 568 PEVGNALRPDTLILVGYGKVPVNEPL 593
Score = 30.2 bits (68), Expect = 1.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 150 VGQSGAGKSTIIRLLFRF 167
VGQSGAGK+T++R++
Sbjct: 415 VGQSGAGKTTLLRMILGA 432
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 45.7 bits (108), Expect = 1e-05
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-- 116
+ALLSGG K+R+ +AR L+ PQ+++LDE T+ LD I L + A TI++
Sbjct: 133 VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 192
Query: 117 -----AHRLSTIIHADEILVMHAGEIVERG 141
A RL D + V+ +G + G
Sbjct: 193 HFMEEAERL-----CDRLCVLESGRKIAEG 217
Score = 36.8 bits (85), Expect = 0.009
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 125 HADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 184
+ D+++V + RG F L G +GAGKSTI R+L + G I + + + +
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLL---GPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS 70
Query: 185 VSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMF 222
++ + R AIGVVPQ F+N + F EN+
Sbjct: 71 RARLA-RVAIGVVPQ----FDN----LDPEFTVRENLL 99
Score = 30.3 bits (68), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL 77
A++ VS SY ++ ++ ++SFT+ G+ LL + IAR LL
Sbjct: 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLL 51
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 45.5 bits (108), Expect = 1e-05
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
+SGG QR+ IA LL ++ DE T+ LD + I L + R ++V H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 120 LSTIIH-ADEILVMHAGEIVERGS 142
+ + AD++ VM G IVE+G
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGD 224
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
A LS G+++RVA+AR LL + +LDE T+ALD A+ CA +++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
Score = 27.8 bits (62), Expect = 5.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 126 ADEILVMHAGEIVERGSLFV----SLLQV-GQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
ADE+ G + G F LQV G +G+GK+T++R+L +G + ++
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG 62
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 46.0 bits (109), Expect = 1e-05
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 41 PERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDTKTE 97
P +A++ N +P G+ L+ LS EK + IA+ L K P + LLDE ++LD + +
Sbjct: 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQK 1738
Query: 98 RNIQSALNR-VCASRTTIIVAHRLSTIIHADEILVMHAG 135
+ L V + I + H + + AD ++ M G
Sbjct: 1739 SALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777
Score = 42.5 bits (100), Expect = 2e-04
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLL---KAPQIVLLDEATSALDT-KTERNIQSALNRVC 108
+P G+ L+ LSGGE QR+ +A LL K P + +LDE T+ L T + I +
Sbjct: 801 LPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH 860
Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
T +I+ H + + AD +L
Sbjct: 861 QGHTVVIIEHNMHVVKVADYVL 882
Score = 30.6 bits (69), Expect = 1.1
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 34 NVSFSY-TPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIV--LLDEATS 90
++ Y TPERA LA LSGGE++R A+A+ L + +LDE +
Sbjct: 462 DLGLPYLTPERA--------------LATLSGGEQERTALAKHLGAELIGITYILDEPSI 507
Query: 91 ALDTK-TERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 130
L + T + I T ++V H I AD I+
Sbjct: 508 GLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRII 548
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 45.1 bits (107), Expect = 1e-05
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
LSGGE QRVAIA L + DE +S LD K N + + ++V H L
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199
Query: 121 S 121
+
Sbjct: 200 A 200
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 45.6 bits (108), Expect = 2e-05
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
+SGGE++RV+IA +L P +++LDE TS LD + L + TI+ + H+
Sbjct: 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP 266
Query: 121 STIIHA--DEILVMHAG 135
S+ ++ D +LV+ G
Sbjct: 267 SSRVYQMFDSVLVLSEG 283
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 44.8 bits (106), Expect = 2e-05
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
Query: 120 LSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAG 156
+ I D + V++ G IV+ G F + Q+ + G G
Sbjct: 207 ILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYG 242
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 45.3 bits (107), Expect = 2e-05
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L + G+IV F+ VG++G GKST+ +L Y + G+I +D + S+
Sbjct: 363 LRIAQGDIV-----FI----VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413
Query: 190 LRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQ 226
R + D LF++ I + ++N LQ
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQ 450
Score = 28.8 bits (64), Expect = 3.3
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER----NIQSALNRVCASRTTIIVA 117
LS G+++R+A+ L+ I+L DE + D +R + L R +T II++
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR--QGKTIIIIS 528
Query: 118 HRLSTIIHADEILVMHAGEIVE 139
H AD+I+ + AG IV+
Sbjct: 529 HDDQYFELADQIIKLAAGCIVK 550
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 45.2 bits (107), Expect = 2e-05
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 17/111 (15%)
Query: 38 SYTPE-RA--ILKNISFT----VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATS 90
+YT E RA IL +SFT V A KT SGG + R+A+AR L P ++LLDE T+
Sbjct: 317 AYTAEARAASILAGLSFTPEMQVKATKTF---SGGWRMRIALARALFIEPDLLLLDEPTN 373
Query: 91 ALDTKTERNIQSALNRVCASRTTIIVAHR---LSTIIHADEILVMHAGEIV 138
LD +++ L + +T I+V+H L+T++ +IL +H ++V
Sbjct: 374 HLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVV--TDILHLHGQKLV 420
Score = 44.1 bits (104), Expect = 6e-05
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 9 QETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNI-SFTVPAGKTLAL-----L 62
Q D +D+ P+L + + F PE+ + ++ SF V LAL L
Sbjct: 579 QHHVDGLDLSSNPLLYMMR--------CFPGVPEQKLRAHLGSFGVTG--NLALQPMYTL 628
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
SGG+K RVA A+ K P I+LLDE ++ LD
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 44.8 bits (107), Expect = 2e-05
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTE-------RNIQSALNRVCASRTTI 114
LSGG++QRVA+ R +++ P + L DE S LD K + + L T++
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK-----TTSL 189
Query: 115 IVAH-RLSTIIHADEILVMHAG---------EIVER-GSLFV 145
V H ++ + AD ++VM+ G E+ E+ S FV
Sbjct: 190 YVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231
Score = 35.2 bits (82), Expect = 0.032
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
VG SG GKST++R++ + SG+I+I + + +
Sbjct: 36 VGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL 71
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 44.4 bits (105), Expect = 3e-05
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSA 103
+++ + K + LS G +QRV +A+ L+ P++++LDE T+ LD I++
Sbjct: 116 EMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV 175
Query: 104 LNRVCASRTTIIVAHRLSTI-IHADEILVMHAGEIVERGSL 143
+ + +T I+ H + + D +++++ G+IV L
Sbjct: 176 IKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKL 216
Score = 31.3 bits (71), Expect = 0.43
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G +GAGKST ++++ + +SG + + +++ + +++ IG +P+ L+
Sbjct: 34 LGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYLPEHNPLY 87
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 43.3 bits (102), Expect = 4e-05
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ---SALNRVCASRTTIIVAH 118
LSGGE+QRV IAR ++ P ++L DE T LD I NRV T ++ H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV--TVLMATH 195
Query: 119 RLSTI 123
+ I
Sbjct: 196 DIGLI 200
Score = 34.1 bits (78), Expect = 0.053
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS---LRQAIGVVPQD 200
G SGAGKST+++L+ +G I+ +I + LR+ IG++ QD
Sbjct: 35 GHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 43.6 bits (103), Expect = 4e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV----- 116
LSGG K+R+ +AR L+ P +++LDE T+ LD + + L + A TI++
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM 198
Query: 117 --AHRLSTIIHADEILVMHAGEIVERGS 142
A RL D + V+ G + G+
Sbjct: 199 EEAERL-----CDRLCVIEEGRKIAEGA 221
Score = 34.8 bits (80), Expect = 0.041
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 125 HADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 184
+ D+++V V+RG F LL G +GAGK+T +R+L ++G I + + + +
Sbjct: 17 YGDKLVVDGLSFHVQRGECF-GLL--GPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
Query: 185 VSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENM 221
++ + RQ +GVVPQ F+N + +F EN+
Sbjct: 74 RARHA-RQRVGVVPQ----FDN----LDPDFTVRENL 101
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 43.4 bits (103), Expect = 5e-05
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRV-CASRTTIIVAH 118
LSGGE QR+ +A + VL LDE + L + + L R+ T ++V H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 119 RLSTIIHADEILVM------HAGEIVERG 141
TI AD ++ + H GEIV +G
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 43.9 bits (104), Expect = 5e-05
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG +Q+V I R LL P+I++LDE T +D + I Q + II++ +
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
Query: 121 STIIH-ADEILVMHAGE---IVE 139
++ D ILVM G IV+
Sbjct: 452 PELLGITDRILVMSNGLVAGIVD 474
Score = 43.6 bits (103), Expect = 6e-05
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQ--NIKTVSQA------SLRQAIGVVPQDTV 202
G++GAGKST+++ LF Y +SG I + + K+ +A + Q + +V Q +V
Sbjct: 31 GENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV 90
Query: 203 LFNNSIKAIQKN--FVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNV-----SFS 255
+ N + FVD + M+ + D +DI P VA +V + +FS
Sbjct: 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150
Query: 256 Y 256
Y
Sbjct: 151 Y 151
Score = 34.7 bits (80), Expect = 0.042
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 39 YTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTER 98
Y +AI + + +A LS + Q + IA+ +IV++DE TS+L K
Sbjct: 112 YRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
Query: 99 NIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIV 138
++ + + ++ I+ ++H++ I DEI ++ G+ +
Sbjct: 172 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 43.4 bits (102), Expect = 5e-05
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN---IQSALNRVCASR 111
A +++ LSGG++QR IA L + I+LLDE T+ LD + + + S LNR
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGY 195
Query: 112 TTIIVAHRLSTII-HADEILVMHAGEIVERGS 142
T V H L+ +A ++ + G+IV +G+
Sbjct: 196 TLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
Score = 36.1 bits (83), Expect = 0.012
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G +G GKST++R L R G +++D ++I+ + + + IG++ Q+
Sbjct: 39 IGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQN 89
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 44.2 bits (105), Expect = 5e-05
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 54 PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
L+ LSGG ++ A+ R L+ P ++LLDE T+ LD +T
Sbjct: 149 DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
Score = 41.9 bits (99), Expect = 2e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT 96
LSGGE+ R+ +AR LK +++LDE T+ LD +T
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 7/29 (24%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFID 178
VG++GAGKST++++L +G++ +D
Sbjct: 35 VGRNGAGKSTLMKIL-------NGEVLLD 56
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 42.9 bits (101), Expect = 5e-05
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QS 102
A L+ + A LSGG++ RVA+ R LL P+ +LLDE S LD Q
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 103 ALNRV-CASRTTIIVAH 118
+ V A T+ V H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
Score = 33.3 bits (76), Expect = 0.083
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE---SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G SG GKST++ + + +G+++++ Q + + A ++ IG++ QD +LF
Sbjct: 34 MGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLF 89
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 42.2 bits (100), Expect = 8e-05
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
LS G+K+RVA+AR L+ I +LDE T+ALD + A +I A
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAA 183
Score = 28.3 bits (64), Expect = 3.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
L+ G +G+GK+T++RL+ +G I +D +I
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 43.2 bits (102), Expect = 1e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVA-HR 119
SGGE++RV+IA L +I D AT LD+ T AL + A+ TT +VA ++
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL-KTSANILDTTPLVAIYQ 269
Query: 120 LSTIIHA--DEILVMHAGEIVERGS 142
S + D+++V++ G + G
Sbjct: 270 CSQDAYELFDKVIVLYEGYQIYFGP 294
Score = 31.2 bits (71), Expect = 0.76
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQ-IVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHR 119
L+ +++R+ I L+ P+ ++ LDE TS LD++T +I + + + H+
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ 961
Query: 120 LSTIIHA--DEILVMHAG 135
S I+ D +L++ G
Sbjct: 962 PSAILFEEFDRLLLLQKG 979
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 41.7 bits (99), Expect = 1e-04
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCA- 109
+ L+LLSGGEK A+A LL A +LDE +ALD + N++ R
Sbjct: 109 QRLSLLSGGEKALTALA--LLFAIFRVRPSPFCVLDEVDAALD---DANVE----RFARL 159
Query: 110 ----SRTT--IIVAHRLSTIIHAD 127
S+ T I++ HR T+ AD
Sbjct: 160 LKEFSKETQFIVITHRKGTMEAAD 183
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 42.5 bits (100), Expect = 2e-04
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL-NRVCASRTTIIVAHRL 120
LS +++R+ IA L+ P I+ +DE TS LD + + + N V RT + H+
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079
Query: 121 STIIHA--DEILVM-HAGEIVERGSL 143
S I DE+L+M G+++ G L
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPL 1105
Score = 32.9 bits (75), Expect = 0.23
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
+SGG+K+RV ++ + + +DE ++ LD+ T I L + IV +
Sbjct: 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ--------IVHLTEA 388
Query: 122 TIIHA------------DEILVMHAGEIVERG 141
T++ + D+I+++ G+IV +G
Sbjct: 389 TVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
++RG L L +G +G+GKST+ LL Y +SG+I +D + + R+ V
Sbjct: 346 IKRGEL---LFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
Query: 198 PQDTVLF 204
D LF
Sbjct: 403 FTDFHLF 409
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VAHR 119
LS G+K+R+A+ L + I+LLDE + D R Q L + TI ++H
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 120 LSTIIHADEILVMHAGEIVE 139
IHAD +L M G++ E
Sbjct: 510 DHYFIHADRLLEMRNGQLSE 529
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 42.3 bits (99), Expect = 2e-04
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG ++++++A + ++V+LDE TS +D + R+I L + + RT I+ H
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH--- 1118
Query: 122 TIIHADEI-LVMHAGEIVERGSLFVS 146
H DE L+ I+ +G L+ S
Sbjct: 1119 ---HMDEADLLGDRIAIISQGRLYCS 1141
Score = 40.0 bits (93), Expect = 0.001
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
+G +GAGK+T + +L SG + + ++I+T + ++RQ++G+ PQ +LF++
Sbjct: 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHH 1017
Score = 39.6 bits (92), Expect = 0.002
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 46 LKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN 105
++++ ++ A + SGG K++++ A L+ P +VLLDE T+ +D + R + + +
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114
Query: 106 RVC-ASRTTIIVAHRL 120
+ R ++ +H +
Sbjct: 2115 SIIREGRAVVLTSHSM 2130
Score = 30.0 bits (67), Expect = 1.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
+G +GAGK+T ++L V SGD + ++I T + + + Q +G PQ
Sbjct: 1971 LGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQ 2019
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 40.4 bits (95), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
A LS G+++R+A+AR L + +LDE T+ALD
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 41.3 bits (97), Expect = 4e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTII-VAHR 119
LS G+K+R+A+ LL+ I++LDE + D R Q L + TI ++H
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
Query: 120 LSTIIHADEILVMHAGEIVER 140
IHAD +L M G++ E
Sbjct: 509 DHYFIHADRLLEMRNGQLSEL 529
Score = 37.9 bits (88), Expect = 0.005
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS 189
L + GE+V F+ +G +G+GKST+ LL Y +SG+I +D + +
Sbjct: 344 LTIKRGELV-----FL----IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394
Query: 190 LRQAIGVVPQDTVLF 204
R+ V D LF
Sbjct: 395 YRKLFSAVFSDYHLF 409
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.0 bits (97), Expect = 4e-04
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 65 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASRTTIIVAH 118
G K RV +A+ L P I+LLDE T+ LD T R ++ LN R T II++H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS---TMIIISH 210
Score = 35.6 bits (83), Expect = 0.023
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 43 RAILKNISFTV-PAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
R L + F+ K++ +LSGGEK R+ + +++ P ++++DE T+ +D ++ ++
Sbjct: 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478
Query: 102 SALNRVCASRTTIIVAH 118
AL + T I V+H
Sbjct: 479 MALEKY--EGTLIFVSH 493
Score = 29.1 bits (66), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDT 201
+G++G GK+T++R L G++ D+ +K A+ IG QD
Sbjct: 351 IGENGVGKTTLLRTLV-------GELEPDSGTVKWSENAN----IGYYAQDH 391
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 40.0 bits (94), Expect = 5e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LS G+++RVA+AR L + +LDE +ALD
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
Score = 33.4 bits (77), Expect = 0.067
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 117 AHRLSTIIHADEILVMHAGEIVERGSLFVSLLQV-GQSGAGKSTIIRLLFRFYDVESGDI 175
R + +D ++AGE + Q+ G +GAGK+T++R+L ++G++
Sbjct: 10 CERGERTLFSDLSFTLNAGEAL----------QITGPNGAGKTTLLRILAGLLRPDAGEV 59
Query: 176 FIDNQNIKTV 185
+ + I+ V
Sbjct: 60 YWQGEPIQNV 69
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 40.9 bits (96), Expect = 6e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTERNIQSALNRVCAS 110
++L+LLSGGEK A+A LL A Q +LDE +ALD + N++ +
Sbjct: 1062 QSLSLLSGGEKSLTALA--LLFAIQKYRPAPFYVLDEVDAALD---DANVERVARLIKEM 1116
Query: 111 RTT---IIVAHRLSTIIHADEIL 130
I++ HR T+ AD ++
Sbjct: 1117 SKETQFIVITHRKGTMEAADRLV 1139
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 38.9 bits (90), Expect = 6e-04
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
+ + + G A SG + R+A+A P +++LDE TS LD + E +
Sbjct: 42 LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101
Query: 103 AL-------NRVCASRTTIIVAHRLSTIIHA 126
+ + T I+ + + A
Sbjct: 102 LEELRLLLLLKSEKNLTVILTTNDEKDLGPA 132
Score = 32.3 bits (73), Expect = 0.12
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
VG G+GK+T+ R L R G + +
Sbjct: 8 VGPPGSGKTTLARALARELGPPGGGVIYID 37
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 39.5 bits (93), Expect = 0.001
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN-RVCASRTTIIVAHRLS 121
S G R+A + P I+LLDE + D + LN V ++T ++V+H L
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG 208
Query: 122 TI-IHADEILVMHAGEIVERGSL 143
I + D + + G+I GS
Sbjct: 209 AIKQYCDRAIWLEHGQIRMEGSP 231
Score = 29.1 bits (66), Expect = 2.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 36 SFSYTPERAILKNISFTVPAGKTLALL 62
E LK+ISF + G+ + ++
Sbjct: 33 GGRKVAEFWALKDISFEIYKGERVGII 59
Score = 28.4 bits (64), Expect = 3.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFID 178
+G +GAGKST+++L+ Y SG + +
Sbjct: 59 IGHNGAGKSTLLKLIAGIYKPTSGKVKVT 87
Score = 27.2 bits (61), Expect = 9.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 253 SFSYTPERAILKNISFTVPAGKTLA 277
E LK+ISF + G+ +
Sbjct: 33 GGRKVAEFWALKDISFEIYKGERVG 57
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 39.5 bits (92), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LSGGE++RV IAR L P+ +LLDE + +D
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Score = 34.9 bits (80), Expect = 0.033
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 127 DEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVS 186
D L +++GEIV LL G +GAGK+T ++ ++G+I ID+++I +
Sbjct: 21 DVSLTVNSGEIV-------GLL--GPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP 71
Query: 187 -QASLRQAIGVVPQDTVLF 204
A R+ IG +PQ+ +F
Sbjct: 72 LHARARRGIGYLPQEASIF 90
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 39.7 bits (93), Expect = 0.001
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LS G +Q++ ++ P++++LDE S LD ++ A+ + TII + HR+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 121 STIIHA----DEILVMHAGEIVERGSL 143
H D +L++ G+ V G++
Sbjct: 191 E---HVEELCDRLLMLKKGQTVLYGTV 214
Score = 35.0 bits (81), Expect = 0.030
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G +GAGK+T R++ + G+I + + ++ IG +P++ L+
Sbjct: 34 LGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLY 84
Score = 28.1 bits (63), Expect = 5.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
A+E V+ S+ ++A+ NISF VP G+ LL
Sbjct: 2 ALEIEGVTKSFGDKKAV-DNISFEVPPGEIFGLL 34
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 39.4 bits (92), Expect = 0.001
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 26/107 (24%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLK---------APQIVLLDEATSALDTKTERNIQSALN 105
G+ + LSGGE RV AR L + P+ +LLDE T+ALD + + +
Sbjct: 139 VGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198
Query: 106 RVCASRT------TII----VAHRLSTIIHADEILVMHAGEIVERGS 142
R+ +R I+ +A R HAD I ++ G IV G+
Sbjct: 199 RL--ARDWNLGVLAIVHDPNLAAR-----HADRIAMLADGAIVAHGA 238
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 36.8 bits (86), Expect = 0.001
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 15/56 (26%)
Query: 62 LSGGEKQR---VAIARTLL---------KAPQIVLLDEATSALDTKTERNIQSALN 105
LSGGEKQ +A+A L AP+++ LDEA + LD E NI+S L
Sbjct: 23 LSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLD---EENIRSLLE 75
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 38.3 bits (90), Expect = 0.002
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
S G K R+A A P I+L+DE + D + Q L + +T I+V+H
Sbjct: 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202
Query: 121 STII-HADEILVMHAGEIVERG 141
S+I D LV+ G+I G
Sbjct: 203 SSIKRLCDRALVLEKGKIRFDG 224
Score = 31.7 bits (73), Expect = 0.26
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
+ GE + L +G++GAGKST++RLL Y +SG + + +
Sbjct: 43 FEVPRGERI-------GL--IGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84
Score = 30.6 bits (70), Expect = 0.76
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 42 ERAILKNISFTVPAGKTLALL 62
E LK++SF VP G+ + L+
Sbjct: 34 EFWALKDVSFEVPRGERIGLI 54
Score = 27.5 bits (62), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 259 ERAILKNISFTVPAGKTLA 277
E LK++SF VP G+ +
Sbjct: 34 EFWALKDVSFEVPRGERIG 52
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 38.4 bits (89), Expect = 0.002
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
G +GAGK+T+++L+ + E G+I + Q+IK
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66
Score = 34.9 bits (80), Expect = 0.025
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR 111
LLS G+K++VA+ R + ++ LLDE ALD E ++ + + ++ R
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITKIQEHR 174
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR-L 120
LSGG +Q+ + R L + +++LLDE T +D + I + + + A ++ L
Sbjct: 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456
Query: 121 STIIH-ADEILVMHAGEIV 138
++ AD I+VM G I
Sbjct: 457 PEVLGVADRIVVMREGRIA 475
Score = 38.4 bits (90), Expect = 0.003
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
R L+++ + L LS G++Q V IA+ L + +++ DE TS+L + +
Sbjct: 122 REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR 181
Query: 103 ALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVE 139
+ + A I+ V+HR+ I D I V G V
Sbjct: 182 VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
Score = 33.7 bits (78), Expect = 0.089
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK-TVSQASLRQAIGV-------VPQDTV 202
G++GAGKST++++L Y ++G I ID Q ++ + A+L + + VP+ TV
Sbjct: 37 GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96
Query: 203 LFN 205
N
Sbjct: 97 AEN 99
Score = 30.3 bits (69), Expect = 1.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 133 HAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 192
AGEIV LF G GAG+S +++LL+ +G +++D K + S R
Sbjct: 277 RAGEIV---GLF------GLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRD 324
Query: 193 AI--GVV--PQD 200
AI G++ P+D
Sbjct: 325 AIRAGIMLCPED 336
Score = 29.9 bits (68), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 26 AQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK 78
+ + F + ++ +A L +ISF AG+ AL+ GE A TLLK
Sbjct: 1 SSPYLSFDGIGKTFPGVKA-LDDISFDCRAGQVHALM--GENG--AGKSTLLK 48
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 54 PAGK---TLALLSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNR 106
P GK L+LLSGGEK A+A +K +LDE + LD + L
Sbjct: 1079 PPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKE 1138
Query: 107 VCASRTT--IIVAHRLSTIIHADEIL 130
S+ T I++ H T+ AD++
Sbjct: 1139 --FSKNTQFIVITHNKGTMEVADQLY 1162
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 39.2 bits (91), Expect = 0.002
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 49 ISFTV-PAGKT---LALLSGGEKQRVAIARTLLKAPQ------IVLLDEATSALDTKTER 98
I + P GK L LSGGEK VA+A L+ A Q LLDE +ALD ++
Sbjct: 1062 IEISARPPGKGVKNLDNLSGGEKTLVALA--LIFAIQKYRPAPFYLLDEIDAALD---DQ 1116
Query: 99 NIQSALNRVCASRTT---IIVAHRLSTIIHADEIL 130
N+ N + I+++ R + AD ++
Sbjct: 1117 NVSRVANYLKELSKNAQFIVISLREEMLEKADRLV 1151
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
+SGGE+Q +AI R L+ P+++LLDE + L
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
Score = 33.3 bits (76), Expect = 0.082
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 103 ALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIR 162
+ ++V A I H +S I+ EI+ + +G +GAGK+T++
Sbjct: 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTL-----------------IGANGAGKTTLLG 49
Query: 163 LLFRFYDVESGDIFIDNQNIKTVSQAS-LRQAIGVVPQDTVLF 204
L SG I D ++I A +R+A+ +VP+ +F
Sbjct: 50 TLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVF 92
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 38.6 bits (90), Expect = 0.003
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG +Q+V I++ L P++++ DE T +D + I + ++ + ++V+ L
Sbjct: 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469
Query: 121 STIIHA-DEILVMHAGEIVE 139
II D I V G + +
Sbjct: 470 PEIITVCDRIAVFCEGRLTQ 489
Score = 37.8 bits (88), Expect = 0.004
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 35 VSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSAL 92
+ + RA +L + V + +A LS KQ + IA+TL+ +++++DE TS+L
Sbjct: 117 IDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
Query: 93 DTKTERNIQSALNRVCASRTTII-VAHRLSTIIH-ADEILVMHAGEIVERG 141
K + +N++ T I+ ++H+L+ I D VM G V G
Sbjct: 177 TNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 31.3 bits (71), Expect = 0.62
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA-SLRQAIGVVPQDTVLFN 205
+G++GAGKST++++L ++ G I I+N N + + + IG++ Q+ + +
Sbjct: 37 LGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.1 bits (87), Expect = 0.005
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95
VP + LS G+++RVA+AR L + +LDE +A+D +
Sbjct: 125 VPVRQ----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
Score = 30.2 bits (69), Expect = 0.97
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 147 LLQV-GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
L+Q+ G +GAGK++++R+L ++G++ + I+
Sbjct: 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR 66
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 36.6 bits (85), Expect = 0.005
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 62 LSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNR-VCASRTTIIV 116
LSGGEK+ A+A L LK + +LDE LD + + + A+ + I++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 117 AHRLSTIIHADEILVM 132
H AD+++ +
Sbjct: 138 THLPELAELADKLIHI 153
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 35.4 bits (82), Expect = 0.013
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTE 97
F V GK +LSGGEK A+A L+ A Q + +LDE +ALD
Sbjct: 77 ITFDKSYFLVLQGKVEQILSGGEKSLSALA--LIFALQEIKPSPFYVLDEIDAALDPTNR 134
Query: 98 RNIQSALNRV-CASRTTIIVAHRLSTIIHADEIL 130
R + + + + I++ + +AD+++
Sbjct: 135 RRVSDMIKEMAKHTSQFIVITLKKEMFENADKLI 168
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 35.9 bits (83), Expect = 0.015
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQDTVLF 204
+G SG GK+T++RL+ + G+I D +NI +S++ L R+ + ++ Q LF
Sbjct: 39 MGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96
Score = 33.6 bits (77), Expect = 0.077
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
V+ R VSF+ R I NIS TVP GK A++
Sbjct: 8 VDMRGVSFT-RGNRCIFDNISLTVPRGKITAIM 39
Score = 32.8 bits (75), Expect = 0.15
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
V+ R VSF+ R I NIS TVP GK A
Sbjct: 8 VDMRGVSFT-RGNRCIFDNISLTVPRGKITA 37
Score = 29.7 bits (67), Expect = 1.3
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEA-------TSALDTKTERNIQSALNRVCASRTTI 114
LSGG +R A+AR + P +++ DE T + K + SAL C +
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC-----V 198
Query: 115 IVAHRLSTIIH-ADEILVMHAGEIVERGS 142
+V+H + ++ AD ++ +IV GS
Sbjct: 199 VVSHDVPEVLSIADHAYIVADKKIVAHGS 227
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.1 bits (81), Expect = 0.033
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL 104
SGGEK R+ +A + + P ++LLDE T+ LD + + AL
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
Score = 28.6 bits (64), Expect = 3.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDI 175
+G++GAGKST+I+LL SG+I
Sbjct: 344 LGRNGAGKSTLIKLLAGELAPVSGEI 369
Score = 28.2 bits (63), Expect = 5.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
SGG + R+ +A+ L+ ++LLDE T+ LD
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 33.7 bits (77), Expect = 0.072
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVP 198
+LL G +GAGK+T++R+L VESG I ID + ++ +G +P
Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91
Score = 31.4 bits (71), Expect = 0.33
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LS G+K+R+A+AR L + LLDE + LD
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 32.9 bits (76), Expect = 0.085
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 150 VGQSGAGKSTIIRLL 164
GQSG GKST++ L
Sbjct: 41 AGQSGVGKSTLLNAL 55
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 33.1 bits (77), Expect = 0.10
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 150 VGQSGAGKSTIIRLL 164
VGQSG GKST++ L
Sbjct: 91 VGQSGVGKSTLLNAL 105
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 33.3 bits (77), Expect = 0.12
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDI 175
V++L GQSG GKST++ L ++++G+I
Sbjct: 166 VTVL-AGQSGVGKSTLLNALAPDLELKTGEI 195
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 32.2 bits (73), Expect = 0.13
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
G LL G SG GK++++R L V +G +N +LR+ + +
Sbjct: 19 ARSGGPPSVLL-TGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQL 77
Query: 198 PQ 199
+
Sbjct: 78 LR 79
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 32.4 bits (75), Expect = 0.15
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLF 165
RG L V S G SGAGKST+++ L
Sbjct: 4 RGLLIVLS----GPSGAGKSTLVKALL 26
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 33.1 bits (77), Expect = 0.16
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 29/101 (28%)
Query: 62 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSALDTK-TERNIQSALNRVCASR- 111
LSGGE QR+ +A T QI VL LDE + L + +R I++ L + R
Sbjct: 490 LSGGEAQRIRLA-T-----QIGSGLTGVLYVLDEPSIGLHQRDNDRLIET-LKHL---RD 539
Query: 112 ---TTIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
T I+V H TI AD I+ + H GE+V G+
Sbjct: 540 LGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTP 580
Score = 30.8 bits (71), Expect = 0.89
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSAL 92
LSGGE QRV +A+ L K + +LDE T+ L
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 32.3 bits (74), Expect = 0.19
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
L+ G+++R+ IAR ++ P+I++LDE + L+ K + + + + T +++ H
Sbjct: 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213
Query: 120 LSTIIH-ADEILVMHAG 135
+ ++ +D I V++ G
Sbjct: 214 MKLVMGISDRIYVVNQG 230
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
+G +GAGK+T+ L FY G I + Q+I
Sbjct: 37 IGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 32.6 bits (74), Expect = 0.23
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 62 LSGGEKQ------RVAIARTLLKAPQIVLLDEATSALDTKTERN----IQSALNRVCASR 111
LSGGEK RVA+A+ L ++++DE T+ LD N I+ +L
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIP 861
Query: 112 TTIIVAH 118
I+++H
Sbjct: 862 QVIMISH 868
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 32.0 bits (72), Expect = 0.23
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA 117
+S G K+ +A+ LL A ++L+DE + L K R + L + +I
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFT 248
Score = 29.7 bits (66), Expect = 1.4
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
+G +G+GKS +++ L + S + +D
Sbjct: 5 IGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNV 38
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 32.3 bits (74), Expect = 0.27
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIF----IDNQNIKTVS 186
VG SG+GKST R F+ +V S D D++N ++ S
Sbjct: 14 VGASGSGKSTFARKHFKPTEVLSSDFCRGLVSDDENDQSAS 54
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 31.3 bits (72), Expect = 0.37
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 140 RGSLFVSLLQVGQSGAGKSTIIRLLF 165
+G L V G SG GKST+++ L
Sbjct: 3 KGLLIVL---SGPSGVGKSTLVKALL 25
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 31.9 bits (73), Expect = 0.41
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
LS G+++ I R L+K P +++LDE LD
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
Score = 30.8 bits (70), Expect = 0.91
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LS GE ++ + + L+ P +++LDE LD + + + L + S T++ V +R
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 121 STI 123
I
Sbjct: 196 DEI 198
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 31.4 bits (72), Expect = 0.49
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 146 SLLQVGQSGAGKSTIIRLLF 165
+++ VG+SG GKST I LF
Sbjct: 6 NIMVVGESGLGKSTFINTLF 25
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 30.2 bits (69), Expect = 0.50
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 151 GQSGAGKSTIIRLLFRFYD 169
G SG GKST+++ L +D
Sbjct: 6 GPSGVGKSTLLKRLLEEFD 24
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 30.3 bits (69), Expect = 0.66
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 150 VGQSGAGKSTIIRLL---FRFYDVESGDIF 176
+G GAGKST+ + L +++GDI
Sbjct: 6 LGPPGAGKSTLAKKLAKKLGLPHLDTGDIL 35
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 30.2 bits (68), Expect = 0.77
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ 187
G +G GKS+++R++ SG+I+ N NI +++
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAK 69
Score = 26.8 bits (59), Expect = 9.8
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV--AHR 119
LS G ++ VAIAR + + LLDE + L K R++ + L + A+ I++ +H
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLS-KENRDLLNNLIVMKANSGGIVLLSSHL 182
Query: 120 LSTIIHADEI 129
S+I A +
Sbjct: 183 ESSIKSAQIL 192
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 29.2 bits (65), Expect = 0.83
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 150 VGQSGAGKSTIIRLLFRFYD---VESGDIFI 177
G G+GKST+ + L + D+
Sbjct: 5 TGPPGSGKSTLAKKLAEKLGIPVISLDDLLR 35
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 139 ERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAI 194
G + G+SG+GK+T++R L R ++++ + + L + I
Sbjct: 3 GAGIGVL----TGESGSGKTTLLRRLARQLP-NRRVVYVEAPS--LGTPKDLLRKI 51
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 30.2 bits (69), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDI 175
VGQSG GKS++I L ++ GD+
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 29.8 bits (68), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 151 GQSGAGKSTIIRLLFRFYDVE---SGDIF 176
G G+GK+T+ RLL ++ +G+IF
Sbjct: 7 GPPGSGKTTVARLLAEKLGLKHVSAGEIF 35
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 151 GQSGAGKSTIIRLLFR 166
G SGAGKST+++ L
Sbjct: 7 GPSGAGKSTLVKALLE 22
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 29.8 bits (67), Expect = 1.3
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 147 LLQVGQSGAGKSTIIRLL---FRFYDVESGDIFIDNQNIKTVSQASLRQAI--GVVPQDT 201
L+ +G G+GK TI ++L +Y + +GD+F +N T ++Q + G + D+
Sbjct: 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDS 62
Query: 202 V---LFNNSIKAIQKN 214
+ + + I I+ N
Sbjct: 63 ITIKIVEDKINTIKNN 78
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 27.5 bits (62), Expect = 1.5
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 142 SLFVSLLQVGQSGAGKSTII 161
+LL G SG+GKST+I
Sbjct: 20 DPKGTLL-TGPSGSGKSTLI 38
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 30.0 bits (67), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESG 173
+ERG L + L G G GK+TI R+L + + E+G
Sbjct: 31 LERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETG 66
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 145 VSLLQVGQSGAGKSTIIRLL 164
V++L GQ GAGK+ + R L
Sbjct: 13 VAVLLGGQPGAGKTELARAL 32
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.5 bits (67), Expect = 1.7
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 150 VGQSGAGKSTIIR-LLF------RFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 202
VG SG+GK+T+ LL+ R VE G+ D + + S+ V P +
Sbjct: 5 VGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSI--ETSVAP---L 59
Query: 203 LFNNSIKAIQKNFVDMENMFDLLQET 228
+N + N +D D + ET
Sbjct: 60 EWNG----HKINLIDTPGYADFVGET 81
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 29.5 bits (67), Expect = 1.7
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 21/66 (31%)
Query: 48 NISFTVPAGKTLAL-------------LSGGEKQRVAIARTLLKAPQ------IVLLDEA 88
N + VP GK +L LSGG+K VA+A L+ A Q L DE
Sbjct: 132 NPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA--LIFAIQKCDPAPFYLFDEI 189
Query: 89 TSALDT 94
+ALD
Sbjct: 190 DAALDA 195
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 150 VGQSGAGKSTIIRLL 164
+GQSG GKST+I L
Sbjct: 170 LGQSGVGKSTLINAL 184
>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional.
Length = 169
Score = 28.5 bits (64), Expect = 2.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
VG GAGK+T+ + L F D+ D FI+N+ KTV
Sbjct: 7 VGYMGAGKTTLGKALARELGLSFIDL---DFFIENRFHKTVGD 46
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 28.7 bits (65), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
+G GAGKSTI R L F D D I+ + ++++
Sbjct: 8 IGFMGAGKSTIGRALAKALNLPFIDT---DQEIEKRTGMSIAE 47
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 29.2 bits (66), Expect = 2.5
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV---LFNNS 207
G++G+GK+T+ RL F +E G I N ++ + V +D V
Sbjct: 23 GRNGSGKTTLSRL---FRSLELGRIHEKYSNCSFEWKSDDPLKVRVYNRDFVEENFDEGE 79
Query: 208 IKAI---QKNFVDMENMFDLLQE 227
IK + + +++E + L++
Sbjct: 80 IKGVFTLGEENIEIEAQIEELKK 102
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 28.5 bits (64), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE 171
+G SG+GKST+ R L + Y+
Sbjct: 6 IGYSGSGKSTLARKLSQHYNCP 27
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 147 LLQVGQSGAGKSTIIRLLF 165
L+ VG+SG GK+T+I LF
Sbjct: 7 LMVVGESGLGKTTLINTLF 25
>gnl|CDD|225705 COG3164, COG3164, Predicted membrane protein [Function unknown].
Length = 1271
Score = 29.3 bits (66), Expect = 2.9
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 26 AQGAVEFRNVSFSYTPERAILKNIS----FTVPAGKTLALLSGGEKQRVAIARTLLKAPQ 81
A G V N S P + L+N+S F + L + +++ T + +
Sbjct: 681 AGGEVTLSNNSLFIKPLNSTLENVSGKFRFDNDGLSSEPLTARWLGGPLSVGFTTKEGAK 740
Query: 82 I 82
Sbjct: 741 D 741
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 28.2 bits (64), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDV 170
+G GAGKSTI RLL + F D
Sbjct: 10 IGFMGAGKSTIGRLLAKRLGYDFIDT 35
>gnl|CDD|225806 COG3267, ExeA, Type II secretory pathway, component ExeA (predicted
ATPase) [Intracellular trafficking and secretion].
Length = 269
Score = 28.5 bits (64), Expect = 3.7
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFR-FYDVESGDIFIDNQNIKTVSQA 188
++ + G +++ G+ G+GK+ + R L + + + ID T+S A
Sbjct: 39 ALLMLHAAIADGQGILAV--TGEVGSGKTVLRRALLASLNEDQVAVVVIDKP---TLSDA 93
Query: 189 SLRQAI 194
+L +AI
Sbjct: 94 TLLEAI 99
>gnl|CDD|173353 PTZ00057, PTZ00057, glutathione s-transferase; Provisional.
Length = 205
Score = 28.0 bits (62), Expect = 4.0
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 156 GKSTIIRLLFRFYDVE--------SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNS 207
GK+ +IRL+F + +E +GD FI+ +N K Q + ++ D ++F S
Sbjct: 14 GKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQ-VPILEMDNIIFAQS 72
>gnl|CDD|131422 TIGR02369, trimeth_pyl, trimethylamine:corrinoid methyltransferase.
This model represents a distinct subfamily of
pfam06253. All members here are trimethylamine:corrinoid
methyltransferases that contain a critical pyrrolysine
residue incorporated during translation via a special
tRNA for a TAG (amber) codon. Known members so far are
from the genus Methanosarcina. It is one of a suite of
three non-homologous enzymes with a critical UAG-encoded
pyrrolysine residue in these species (along with
dimethylamine methyltransferase and monomethylamine
methyltransferase). It demethylates trimethylamine,
leaving dimethylamine, and methylates the prosthetic
group of its small cognate corrinoid protein, MttC. The
methyl group is then transferred by
methylcorrinoid:coenzyme M methyltransferase to coenzyme
M. Note that the pyrrolysine residue is variously
translated as K or X, or as a stop codon that truncates
the sequence.
Length = 489
Score = 28.5 bits (63), Expect = 4.4
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 175 IFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDI 234
+ IDN IK +A Q I V + ++ +IQK V + N F L++T +++
Sbjct: 378 LVIDNDIIKMTKKA--LQGIEVNEETL-----AVDSIQK--VGIGNNFLALKQTRLLVNY 428
Query: 235 PQAPML 240
P PML
Sbjct: 429 PSDPML 434
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 28.0 bits (63), Expect = 4.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 150 VGQSGAGKSTIIRLLF 165
VGQ+GAGK+TII L
Sbjct: 28 VGQNGAGKTTIIEALK 43
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.5 bits (62), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
+G GAGK+T+ RLL F D+ D I+ + ++ +
Sbjct: 5 IGMMGAGKTTVGRLLAKALGLPFVDL---DELIEQRAGMSIPE 44
>gnl|CDD|216732 pfam01837, DUF39, Domain of unknown function DUF39. This presumed
domain is about is about 360 residues long. The function
of this domain is unknown. It is found in some proteins
that have two C-terminal CBS pfam00571 domains. There
are also proteins that contain two inserted Fe4S domains
near the C-terminal end of the domain. The protein
MTH_855 has been misannotated as an inosine
monophosphate dehydrogenase based on the similarity to
the CBS domains.
Length = 335
Score = 27.9 bits (63), Expect = 5.4
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 169 DVESGDIFIDNQNIKTVSQASLRQA 193
+++SG I I+ + + T +S ++A
Sbjct: 293 ELKSGSIEIEGKKVPTAPLSSRKRA 317
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 27.8 bits (63), Expect = 5.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 151 GQSGAGKSTIIRLL 164
G SGAGKS +R L
Sbjct: 13 GLSGAGKSVALRAL 26
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 27.6 bits (62), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 150 VGQSGAGKSTIIRLLF 165
VG+S GKST++R L
Sbjct: 15 VGRSNVGKSTLVRELT 30
>gnl|CDD|132060 TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM
locus subfamily. Members of this protein are marked as
probable ATPases by the nucleotide binding P-loop motif
GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of
helicases, and extensive homology to ATPases of
MSHA-type pilus systems and to GspA proteins associated
with type II protein secretion systems [Protein fate,
Protein and peptide secretion and trafficking].
Length = 269
Score = 27.7 bits (62), Expect = 5.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVE 171
+L G+ GAGK+T+IR L + D E
Sbjct: 46 ILITGEVGAGKTTLIRNLLKRLDQE 70
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 26.9 bits (60), Expect = 5.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDI 175
VG+ GKST+I L D
Sbjct: 5 VGRPNVGKSTLINALTGAKVAIVSDY 30
>gnl|CDD|213242 cd03275, ABC_SMC1_euk, ATP-binding cassette domain of eukaryotic
SMC1 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 247
Score = 27.9 bits (63), Expect = 5.9
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 29/79 (36%)
Query: 25 VAQGAVEFRNVSFSYTPERAILKNISFTVPAGK---TLALLSGGEKQRVAIARTLL---- 77
V QG VE +I+ P GK + LSGGEK A+A LL
Sbjct: 132 VFQGDVE----------------SIASKNPPGKRFRDMDNLSGGEKTMAALA--LLFAIH 173
Query: 78 ---KAPQIVLLDEATSALD 93
AP V LDE +ALD
Sbjct: 174 SYQPAPFFV-LDEVDAALD 191
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 27.6 bits (62), Expect = 6.0
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 18/47 (38%)
Query: 150 VGQSGAGKSTIIRLLFR------------------FYDVESGDIFID 178
G+S GKS++I L F++V+ +D
Sbjct: 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVD 76
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 27.9 bits (63), Expect = 6.1
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKA--PQIVLLDEATSALDTKTERNIQSALN 105
A TL ++ GG+ + A+ +L+A IV + + K NI A N
Sbjct: 129 AAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGN 181
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 27.1 bits (61), Expect = 6.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 151 GQSGAGKSTIIRLL-----FRFYDVESGDI 175
G +G+GKST+ +LL + D +G I
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLD--TGGI 33
>gnl|CDD|180525 PRK06310, PRK06310, DNA polymerase III subunit epsilon; Validated.
Length = 250
Score = 27.9 bits (62), Expect = 6.1
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 40/163 (24%)
Query: 75 TLLKAPQIVLLDEATSALDTKTERNIQSA-----LNRVCASRTTIIVAHRLSTIIHADEI 129
+LLK + V LD T+ LD K +R I+ A + V S +I R ++ A+
Sbjct: 2 SLLKDTEFVCLDCETTGLDVKKDRIIEFAAIRFTFDEVIDSVEFLINPER---VVSAESQ 58
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYD-VESGDIFIDNQ---NIKTV 185
+ H + + R K I + + + GD + + +++ +
Sbjct: 59 RIHHISDAMLR---------------DKPKIAEVFPQIKGFFKEGDYIVGHSVGFDLQVL 103
Query: 186 SQASLRQAIGVVPQDTVLF-------------NNSIKAIQKNF 215
SQ S R + + + NNS++A+ +F
Sbjct: 104 SQESERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHF 146
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.2 bits (62), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFY 168
VG G GKST+IR L R +
Sbjct: 75 VGPPGTGKSTLIRSLVRRF 93
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFY 168
VG G GKST+IR L + Y
Sbjct: 45 VGPPGVGKSTLIRSLIKRY 63
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 27.1 bits (61), Expect = 7.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 151 GQSGAGKSTIIRLLFR 166
G SG+GKSTI R L
Sbjct: 6 GLSGSGKSTIARALEE 21
>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase.
Length = 158
Score = 26.8 bits (60), Expect = 8.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 154 GAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
GAGKSTI RLL F D D I+ + ++++
Sbjct: 2 GAGKSTIGRLLAKALGLPFIDT---DQEIEKRTGMSIAE 37
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 26.6 bits (59), Expect = 8.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
G G+GK+T+ + L D+ +N
Sbjct: 4 TGTPGSGKTTLAKELAERLGDVLRDLAKEN 33
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 27.6 bits (62), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 150 VGQSGAGKSTII-RLL 164
+G SG GKST++ LL
Sbjct: 201 LGSSGVGKSTLVNALL 216
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 27.1 bits (61), Expect = 8.8
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 18/47 (38%)
Query: 150 VGQSGAGKSTIIRLLFR------------------FYDVESGDIFID 178
G+S GKS++I L F++V +D
Sbjct: 5 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVD 51
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 27.7 bits (62), Expect = 8.8
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLF-RFYDVESGDIFI 177
L T + H GE + G + +G +GAGK+ ++ L + + I
Sbjct: 417 VLKTEDGSPFYFNFHVGE--DVGHTLI----IGPTGAGKTVLLSFLLAQALKYGNPQIVA 470
Query: 178 -DNQN 181
D N
Sbjct: 471 FDKDN 475
>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13
(Rab8, Rab10, Rab13). Rab8/Sec4/Ypt2 are known or
suspected to be involved in post-Golgi transport to the
plasma membrane. It is likely that these Rabs have
functions that are specific to the mammalian lineage and
have no orthologs in plants. Rab8 modulates polarized
membrane transport through reorganization of actin and
microtubules, induces the formation of new surface
extensions, and has an important role in directed
membrane transport to cell surfaces. The Ypt2 gene of
the fission yeast Schizosaccharomyces pombe encodes a
member of the Ypt/Rab family of small GTP-binding
proteins, related in sequence to Sec4p of Saccharomyces
cerevisiae but closer to mammalian Rab8. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated sequences
in this CD, the lipid modification site is not available
for annotation.
Length = 167
Score = 26.8 bits (60), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
LL +G SG GKS LL RF + D F +
Sbjct: 6 LLLIGDSGVGKSC---LLLRFSE----DSFNPS 31
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 27.5 bits (61), Expect = 9.2
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 18/61 (29%)
Query: 54 PAGKTLALLSGGEKQRVAIARTL---------------LKAPQIVLLDEATSALDTKTER 98
P SGGE+ A+A + AP+++LLDEA + +D
Sbjct: 1240 PLTHRFGPASGGER---ALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARA 1296
Query: 99 N 99
+
Sbjct: 1297 H 1297
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 26.9 bits (60), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 151 GQSGAGKSTIIRLLFRFYD---VESGDIF 176
G G+GK+T+ R L V +G IF
Sbjct: 7 GLPGSGKTTVARELAEHLGLKLVSAGTIF 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.374
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,938,217
Number of extensions: 1333779
Number of successful extensions: 3079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2805
Number of HSP's successfully gapped: 1017
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)