RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18009
(277 letters)
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 170 bits (432), Expect = 1e-51
Identities = 60/81 (74%), Positives = 72/81 (88%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGEKQRVAIART+LKAP I+LLDEATSALDT ER IQ++L +VCA+RTTI+VAHRLS
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 122 TIIHADEILVMHAGEIVERGS 142
T+++AD+ILV+ G IVERG
Sbjct: 251 TVVNADQILVIKDGCIVERGR 271
Score = 123 bits (312), Expect = 7e-34
Identities = 44/60 (73%), Positives = 50/60 (83%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I V+QASLR IGVVPQDTVLFN++I
Sbjct: 86 VGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145
Score = 104 bits (261), Expect = 2e-26
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
+ + F+DMENMFDLL+E +V D+P A L +G +EF NV FSY R L
Sbjct: 11 SSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETL 70
Query: 264 KNISFTVPAGKTLA 277
+++SFTV G+TLA
Sbjct: 71 QDVSFTVMPGQTLA 84
Score = 95.8 bits (239), Expect = 2e-23
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
MENMFDLL+E +V D+P A L +G +EF NV FSY R L+++SFTV G+TLA
Sbjct: 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLA 84
Query: 61 LL--SGGEK 67
L+ SG K
Sbjct: 85 LVGPSGAGK 93
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 168 bits (428), Expect = 1e-51
Identities = 47/81 (58%), Positives = 65/81 (80%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE Q A+ + +RT II+AHRLS
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI A+ I++++ G+IVE+G+
Sbjct: 216 TISSAESIILLNKGKIVEKGT 236
Score = 119 bits (300), Expect = 1e-32
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKSTI +LL+RFYD E GDI I +N+ ++ S+R IG+VPQDT+LFN +IK
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Score = 64.9 bits (159), Expect = 1e-12
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 16 DIPQAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEK 67
+EF +V+FSY LK+I+F +P+G T AL+ +G K
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Score = 61.8 bits (151), Expect = 2e-11
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 233 DIPQAPMLCVAQGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+EF +V+FSY LK+I+F +P+G T A
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCA 50
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 156 bits (397), Expect = 4e-47
Identities = 39/81 (48%), Positives = 62/81 (76%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
+SGG++QR+AIAR L+ P+I++LDEAT++LD+++E +Q AL+ + RTT+++AHRLS
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI+ AD+I + G+I G
Sbjct: 200 TIVDADKIYFIEKGQITGSGK 220
Score = 109 bits (276), Expect = 3e-29
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
G SG GKSTI LL RFY +G+I ID Q I +S + R IG V QD+ + +I+
Sbjct: 34 AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93
Score = 58.3 bits (142), Expect = 2e-10
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SGGEK 67
+ R+V F+Y IL++ISF +A SGG K
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGK 41
Score = 54.8 bits (133), Expect = 5e-09
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+ R+V F+Y IL++ISF +A
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIA 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 156 bits (396), Expect = 7e-47
Identities = 44/81 (54%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C RT II+AHRLS
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205
Query: 122 TIIHADEILVMHAGEIVERGS 142
T+ +AD I+VM G+IVE+G
Sbjct: 206 TVKNADRIIVMEKGKIVEQGK 226
Score = 107 bits (271), Expect = 2e-28
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100
Score = 57.9 bits (141), Expect = 4e-10
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 27 QGAVEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEK 67
+ FRN+ F Y P+ IL NI+ ++ G+ + ++ SG K
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGK 48
Score = 54.8 bits (133), Expect = 4e-09
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 244 QGAVEFRNVSFSYTPER-AILKNISFTVPAGKTLA 277
+ FRN+ F Y P+ IL NI+ ++ G+ +
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIG 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 152 bits (387), Expect = 1e-42
Identities = 49/83 (59%), Positives = 67/83 (80%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LSGG++QRVAIAR LL+ +++LDEATSALDT++ER IQ+AL+ + ++T +++AHR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LSTI ADEILV+ GEI+ERG
Sbjct: 539 LSTIEQADEILVVDEGEIIERGR 561
Score = 103 bits (259), Expect = 4e-25
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKSTI L RFYDV+SG I +D +++ +LR+ +V Q+ LFN++I
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
Query: 210 A 210
Sbjct: 435 N 435
Score = 62.2 bits (152), Expect = 3e-11
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
+ Q+ + +F L+ + + G V+ ++V+F+Y E+
Sbjct: 301 LTSVTSEFQRGMAACQTLFGLMDLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEKPA 358
Query: 263 LKNISFTVPAGKTLA 277
L ++SF++P GKT+A
Sbjct: 359 LSHVSFSIPQGKTVA 373
Score = 61.1 bits (149), Expect = 9e-11
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
+ +F L+ + + G V+ ++V+F+Y E+ L ++SF++P GKT+
Sbjct: 315 CQTLFGLMDLETERDNGKYE--AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTV 372
Query: 60 ALL--SGGEK 67
AL+ SG K
Sbjct: 373 ALVGRSGSGK 382
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 152 bits (386), Expect = 1e-42
Identities = 50/83 (60%), Positives = 69/83 (83%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LLSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+ + +RT++++AHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LSTI ADEI+V+ G IVERG+
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGT 561
Score = 103 bits (259), Expect = 3e-25
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG+SG+GKSTI L+ RFYD++ G I +D +++ + ASLR + +V Q+ LFN+++
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434
Query: 210 A 210
Sbjct: 435 N 435
Score = 63.4 bits (155), Expect = 1e-11
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
N Q+ + +F +L + + + + A G +EFRNV+F+Y E
Sbjct: 301 LTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV--IDRATGDLEFRNVTFTYPGREVPA 358
Query: 263 LKNISFTVPAGKTLA 277
L+NI+ +PAGKT+A
Sbjct: 359 LRNINLKIPAGKTVA 373
Score = 62.6 bits (153), Expect = 3e-11
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
+ +F +L + + + + A G +EFRNV+F+Y E L+NI+ +PAGKT+
Sbjct: 315 CQTLFAILDSEQEKDEGKRV--IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTV 372
Query: 60 ALL--SGGEK 67
AL+ SG K
Sbjct: 373 ALVGRSGSGK 382
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 145 bits (368), Expect = 2e-42
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV--CASRTTIIVA 117
LSGG++Q VA+AR L++ P++++LD ATSALD + +Q L ASRT +++
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214
Query: 118 HRLSTIIHADEILVMHAGEIVERGS 142
+LS A IL + G + E+G+
Sbjct: 215 QQLSLAERAHHILFLKEGSVCEQGT 239
Score = 93.4 bits (233), Expect = 1e-22
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Score = 56.0 bits (136), Expect = 2e-09
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEK 67
+G V+F++VSF+Y P +L+ ++FT+ GK AL+ +G K
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGK 58
Score = 52.5 bits (127), Expect = 3e-08
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F++VSF+Y P +L+ ++FT+ GK A
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTA 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 150 bits (382), Expect = 4e-42
Identities = 49/81 (60%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR++IAR L P I++LDEATSALD ++E IQ AL+ + RTT+IVAHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI HAD+I+V+ G IVE G+
Sbjct: 538 TITHADKIVVIENGHIVETGT 558
Score = 102 bits (256), Expect = 9e-25
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKST+I L+ RFYDV SG I ID NIK SLR IG+V QD +LF++++K
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432
Score = 71.1 bits (175), Expect = 4e-14
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAI 262
S + ++F M+ +F L+ E D+ + A + + QG ++ +VSF Y E I
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI 356
Query: 263 LKNISFTVPAGKTLA 277
LK+I+ ++ G+T+A
Sbjct: 357 LKDINLSIEKGETVA 371
Score = 69.1 bits (170), Expect = 2e-13
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP-ERAILKNISFTVPAGKTL 59
M+ +F L+ E D+ + A + + QG ++ +VSF Y E ILK+I+ ++ G+T+
Sbjct: 311 MDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETV 370
Query: 60 ALL--SGGEK 67
A + SGG K
Sbjct: 371 AFVGMSGGGK 380
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 149 bits (379), Expect = 5e-41
Identities = 48/83 (57%), Positives = 66/83 (79%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LSGG+KQR+AIAR L++ P+I+LLDEATSALDT++E +Q+AL++ RTTI++AHR
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LST+ +AD I G IVE+G+
Sbjct: 585 LSTVRNADVIAGFDGGVIVEQGN 607
Score = 148 bits (375), Expect = 2e-40
Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++ RT I++AHR
Sbjct: 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LSTI +AD I+V+ G++ E G+
Sbjct: 1230 LSTIQNADLIVVIQNGKVKEHGT 1252
Score = 93.6 bits (233), Expect = 1e-21
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKST+++LL RFYD +G +F+D + IK ++ LR +G+V Q+ +LF+ SI
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Score = 93.2 bits (232), Expect = 2e-21
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKST ++L+ R YD G + ID Q+I+T++ LR+ IGVV Q+ VLF +I
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
Score = 55.0 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLAL--LSGGEK 67
QG +EF+N+ FSY E ILK ++ V +G+T+AL SG K
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429
Score = 53.9 bits (130), Expect = 3e-08
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 3 NMFDLLQETCDVIDI--PQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKT 58
++ ++ E ID Q + +G V+F V F+Y P +L+ +S V G+T
Sbjct: 1003 HIIRII-EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061
Query: 59 LAL 61
LAL
Sbjct: 1062 LAL 1064
Score = 52.7 bits (127), Expect = 5e-08
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
QG +EF+N+ FSY E ILK ++ V +G+T+A
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA 420
Score = 51.6 bits (124), Expect = 1e-07
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 220 NMFDLLQETCDVIDI--PQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKT 275
++ ++ E ID Q + +G V+F V F+Y P +L+ +S V G+T
Sbjct: 1003 HIIRII-EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061
Query: 276 LA 277
LA
Sbjct: 1062 LA 1063
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 146 bits (372), Expect = 1e-40
Identities = 47/83 (56%), Positives = 63/83 (75%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
LLSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q AL+R+ RT +++AHR
Sbjct: 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR 541
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LSTI +A+ + V+ G+I E G
Sbjct: 542 LSTIKNANMVAVLDQGKITEYGK 564
Score = 98.4 bits (246), Expect = 2e-23
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435
Score = 59.9 bits (146), Expect = 2e-10
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCV--AQGAVEFRNVSFSYT--PERAILKNISFTVPAG 56
+++LL+ + + +L QGA+EF+NV F+Y PE I ++ S ++P+G
Sbjct: 312 GGRLWELLEREPK-LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG 370
Query: 57 KTLALL--SGGEK 67
AL+ SG K
Sbjct: 371 SVTALVGPSGSGK 383
Score = 58.0 bits (141), Expect = 9e-10
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 208 IKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCV--AQGAVEFRNVSFSYT--PERAIL 263
+ K +++LL+ + + +L QGA+EF+NV F+Y PE I
Sbjct: 302 YSELMKGLGAGGRLWELLEREPK-LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIF 360
Query: 264 KNISFTVPAGKTLA 277
++ S ++P+G A
Sbjct: 361 QDFSLSIPSGSVTA 374
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 129 bits (327), Expect = 3e-34
Identities = 43/81 (53%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G++Q +AI R L P+I++LDEATS +DTKTE++IQ+A+ ++ +T+II+AHRL+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI +AD I+V+ GEIVE G
Sbjct: 552 TIKNADLIIVLRDGEIVEMGK 572
Score = 93.8 bits (234), Expect = 8e-22
Identities = 30/60 (50%), Positives = 47/60 (78%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GK+TI+ LL RFYDV+ G I +D +I+ + ++SLR +IG+V QDT+LF+ ++K
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446
Score = 61.4 bits (150), Expect = 6e-11
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
E +F++L + D P A L +G +EF+NV FSY ++ +LK+I+F + G+ +AL
Sbjct: 328 ERIFEILDLE-EEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVAL 386
Score = 61.4 bits (150), Expect = 7e-11
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 211 IQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTV 270
IQ E +F++L + D P A L +G +EF+NV FSY ++ +LK+I+F +
Sbjct: 320 IQMALASAERIFEILDLE-EEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHI 378
Query: 271 PAGKTLA 277
G+ +A
Sbjct: 379 KPGQKVA 385
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 118 bits (298), Expect = 2e-30
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
SGG+KQR++IAR L+K P++++LD+ TS++D TE+ I L R TT I+ ++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 122 TIIHADEILVMHAGEIVERGS 142
T + AD+ILV+H G++ G+
Sbjct: 540 TALLADKILVLHEGKVAGFGT 560
Score = 80.7 bits (200), Expect = 2e-17
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G++G+GKST++ L+ R D E G + +D +++TV LR I VPQ+TVLF+ +IK
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434
Score = 54.1 bits (131), Expect = 2e-08
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYT-PERAILKNISFTVPAGKTLALL 62
L E + + A L +G+V F NV F Y +L ++F+V G +A+L
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVL 375
Score = 54.1 bits (131), Expect = 2e-08
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 225 LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYT-PERAILKNISFTVPAGKTLA 277
L E + + A L +G+V F NV F Y +L ++F+V G +A
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVA 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 109 bits (273), Expect = 1e-27
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G KQ + +AR++L +I+LLDE ++ LD T + I+ L + A T I+ R+
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 122 TIIHADEILVMHAGEIVE----------RGSLFVSLLQ 149
++ D+ LV+ ++ + FV+
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Score = 75.5 bits (186), Expect = 9e-16
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
+G++G+GKST++ R + E G+I ID + +++ R+A GV+PQ +F+ +
Sbjct: 53 LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 26 AQGAVEFRNVSFSYTPE-RAILKNISFTVPAG 56
+ G + ++++ YT AIL+NISF++ G
Sbjct: 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPG 47
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 243 AQGAVEFRNVSFSYTPE-RAILKNISFTVPAG 273
+ G + ++++ YT AIL+NISF++ G
Sbjct: 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPG 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 85.9 bits (213), Expect = 5e-19
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE QR AI + ++ + + DE +S LD K N + + A +I H L
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 121 STIIH-ADEILVMHAGEIVE 139
S + + +D + +++ V
Sbjct: 282 SVLDYLSDFVCIIYGVPSVY 301
Score = 79.3 bits (196), Expect = 6e-17
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE QRVAI L I L+DE ++ LD++ + R T IV H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
Query: 120 LSTIIH-ADEILVMHAGEIVE 139
+ AD+++V
Sbjct: 528 FIMATYLADKVIVFEGIPSKN 548
Score = 48.5 bits (116), Expect = 1e-06
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
+G++G GK+T+I+LL + G I ++ + Q I TV LF
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKK 437
Query: 208 IK 209
I+
Sbjct: 438 IR 439
Score = 37.3 bits (87), Expect = 0.004
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 36/140 (25%)
Query: 115 IVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLL--------FR 166
HRL T G+++ L VG +G GKST +++L R
Sbjct: 92 FKLHRLPTP---------RPGQVL--------GL-VGTNGIGKSTALKILAGKQKPNLGR 133
Query: 167 FYDVESGDIFIDN---QNIKTVSQASLRQAIGVVPQDTVLFN------NSIKAIQKNF-V 216
F D I ++ L I + + + N ++ + + +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 217 DMENMFDLLQETCDVIDIPQ 236
ME + ++ ++ +
Sbjct: 194 RMEKSPEDVKRYIKILQLEN 213
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 82.6 bits (205), Expect = 8e-19
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTT- 113
A + + LS GEKQRV IAR L+ PQ+++LDE + LD ++ S L+ + S T
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 114 --IIVAHRLSTII-HADEILVMHAGEIVERGS 142
I V H + I + +IL++ G+ +++G+
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
Score = 48.7 bits (117), Expect = 6e-07
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV--SQASLRQAIG 195
+ +G ++ G +GAGK+T++ +L + SG + + + V S ++RQ IG
Sbjct: 44 IAKGDKWILY---GLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100
Query: 196 VVPQD-TVLFNNSIKAIQ 212
V F + I
Sbjct: 101 FVSHSLLEKFQEGERVID 118
Score = 39.1 bits (92), Expect = 8e-04
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
++ + + ILK IS+ + G L
Sbjct: 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILY 53
Score = 35.7 bits (83), Expect = 0.011
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAG 273
++ + + ILK IS+ + G
Sbjct: 21 LIQLDQIGRMKQ-GKTILKKISWQIAKG 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 80.9 bits (200), Expect = 6e-18
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
+ AD+IL++H G G+ F L +
Sbjct: 220 EHLKKADKILILHEGSSYFYGT-FSELQNLRPD 251
Score = 35.4 bits (82), Expect = 0.014
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 216 VDMENMFDLLQETC-----DVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTV 270
V MEN+ +E ++ F N S TP +LK+I+F +
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP---VLKDINFKI 61
Query: 271 PAGKTLA 277
G+ LA
Sbjct: 62 ERGQLLA 68
Score = 33.9 bits (78), Expect = 0.045
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 19 QAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
++ F N S TP +LK+I+F + G+ LA
Sbjct: 30 NNRKTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLA 68
Score = 27.3 bits (61), Expect = 6.0
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ------ASLR 191
+ERG L L G +GAGK++++ ++ + G I + I SQ +++
Sbjct: 61 IERGQL---LAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-SGRISFCSQNSWIMPGTIK 116
Query: 192 QAIGVVPQDTVLFNNSIKA 210
+ I V D + + IKA
Sbjct: 117 ENIIGVSYDEYRYRSVIKA 135
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 79.1 bits (196), Expect = 8e-18
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 121 STIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
+ AD+IL++H G G+ F L +
Sbjct: 191 EHLKKADKILILHEGSSYFYGT-FSELQNLQPD 222
Score = 40.6 bits (96), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 27 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 60
V NV+ + +LK+I+F + G+ LA
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLA 38
Score = 40.6 bits (96), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 244 QGAVEFRNVSFSYTPE-RAILKNISFTVPAGKTLA 277
V NV+ + +LK+I+F + G+ LA
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLA 38
Score = 26.4 bits (59), Expect = 9.9
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 16/72 (22%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ERG L L G +GAGK++++ ++ + G I I
Sbjct: 31 IERGQL---LAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGRISFC 74
Query: 198 PQDTVLFNNSIK 209
Q + + +IK
Sbjct: 75 SQFSWIMPGTIK 86
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 81.2 bits (201), Expect = 8e-18
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGG+KQRVAIAR L P+++L D+ATSALD T R+I L + T +++ H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
+ + D + V+ GE++E+ ++
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTVS 249
Score = 51.5 bits (124), Expect = 9e-08
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 138 VERGSLF-VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQA--- 193
V G ++ V +G SGAGKST+IR + G + +D Q + T+S++ L +A
Sbjct: 51 VPAGQIYGV----IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106
Query: 194 IGVVPQ 199
IG++ Q
Sbjct: 107 IGMIFQ 112
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 82.0 bits (203), Expect = 8e-18
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG QR+ +A +LL+ + + D+ +S LD + N+ A+ + ++ I+V H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 122 TIIH-ADEILVMHAGEIVERG 141
+ + D I +++ GE G
Sbjct: 199 VLDYLTDLIHIIY-GESSVYG 218
Score = 81.2 bits (201), Expect = 1e-17
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE Q++ IA TL K + +LD+ +S LD + + A+ RV R T I+ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
LS + AD I+V GE + G
Sbjct: 446 LSIHDYIADRIIVFK-GEPEKAG 467
Score = 42.3 bits (100), Expect = 1e-04
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 202
+G +G GK+T R+L + G + + Q + Q I TV
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----YKPQRIFPNYDGTV 347
Score = 31.9 bits (73), Expect = 0.25
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFID--NQNIKTVSQASLRQ----AIGVVPQDTVL 203
+G++G GK+T++++L +G+I + + N K L++ I ++ L
Sbjct: 31 LGKNGVGKTTVLKIL-------AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE--L 81
Query: 204 FNNSIKAIQKNF 215
++N +K + K
Sbjct: 82 YSNELKIVHKIQ 93
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 80.8 bits (200), Expect = 2e-17
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGE QRVAIA TLL+ I LLDE ++ LD + + A+ + +T ++V H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ I + +D ++V GE G
Sbjct: 532 VLMIDYVSDRLIVFE-GEPGRHG 553
Score = 79.3 bits (196), Expect = 7e-17
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE QRVAIA LL+ DE +S LD + + + R+ ++V H L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 121 STIIH-ADEILVMHAGEIVE 139
+ + + +D I V++ V
Sbjct: 289 AVLDYLSDVIHVVYGEPGVY 308
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
VG +G GK+T +++L + G + D + + Q I + TV L +
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYK---PQYIKAEYEGTVYELLSKI 441
Query: 208 IKA 210
+
Sbjct: 442 DSS 444
Score = 36.9 bits (86), Expect = 0.006
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVE-SGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
VG +G GK+T +++L + S D I Q + L
Sbjct: 123 VGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-LQNYFER----------L 171
Query: 204 FNNSIKAIQKNFVDMENMFDLLQE 227
N I+ + K DLL +
Sbjct: 172 KNGEIRPVVK-----PQYVDLLPK 190
Score = 29.2 bits (66), Expect = 1.5
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 33 RNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+ Y +L V G + ++ +G
Sbjct: 95 EDCVHRYGVNAFVL-YRLPIVKDGMVVGIVGPNG 127
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 80.8 bits (200), Expect = 2e-17
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE QRVAIA TLL+ I LLDE ++ LD + + A+ + T ++V H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461
Query: 120 LSTIIH-ADEILVMHAGEIVERG 141
+ I + +D ++V GE + G
Sbjct: 462 VLMIDYVSDRLMVFE-GEPGKYG 483
Score = 80.4 bits (199), Expect = 3e-17
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVA-HRL 120
LSGGE QRVAIA LL+ DE +S LD + N A+ R+ +++V H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 121 STIIH-ADEILVMHAGEIVERG 141
+ + + +D I V++ GE G
Sbjct: 219 AVLDYLSDIIHVVY-GEPGVYG 239
Score = 43.4 bits (103), Expect = 5e-05
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV--LFNNS 207
VG +G GK+T +++L + G I D + + Q I + TV L +
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEPTEGKIEWD---LTVAYK---PQYIKADYEGTVYELLSKI 371
Query: 208 IKA 210
+
Sbjct: 372 DAS 374
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 147 LLQVGQSGAGKSTIIRLLF-----RFYDVE-SGDIFIDNQNIKTVS---QASLRQAIGVV 197
+ VG +G GKST +++L S D I + + I V
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 198 PQD--TVLFNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQ 236
+ L ++K + + L+E +++
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 77.2 bits (191), Expect = 7e-17
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGGEK+RVAIA ++ P I++LDE LD + + ++ + + T+I ++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 121 STII-HADEILVMHAGEIVERGS 142
T+I H D ++V+ G+ V G+
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGT 221
Score = 44.5 bits (106), Expect = 1e-05
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ G + + G +G+GKST+++++ + SGD+ D + K +R+ IG+
Sbjct: 30 INEGE-CLLV--AGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIA 83
Query: 198 PQD 200
Q
Sbjct: 84 FQY 86
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 29 AVEFRNVSFSYTP----ERAILKNISFTVPAGKTLALL 62
+E NVS + E+ L+N+S + G+ L +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVA 39
Score = 36.4 bits (85), Expect = 0.006
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 246 AVEFRNVSFSYTP----ERAILKNISFTVPAGKTLA 277
+E NVS + E+ L+N+S + G+ L
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLL 37
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 77.2 bits (191), Expect = 8e-17
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LS G+K+RVAIA L+ P++++LDE T+ LD I L + T II H
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 120 LSTI-IHADEILVMHAGEIVERGS 142
+ + ++ D + VM G ++ +G+
Sbjct: 204 IDIVPLYCDNVFVMKEGRVILQGN 227
Score = 45.2 bits (108), Expect = 7e-06
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIG 195
++RG ++L G +G GKST+ + SG I DN+ I + LR++IG
Sbjct: 31 IKRGE-VTAIL--GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87
Query: 196 VVPQD 200
+V QD
Sbjct: 88 IVFQD 92
Score = 41.4 bits (98), Expect = 1e-04
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 30 VEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
++ ++++Y+ LK I+ + G+ A+L
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAIL 40
Score = 38.7 bits (91), Expect = 0.001
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 247 VEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
++ ++++Y+ LK I+ + G+ A
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTA 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 76.6 bits (189), Expect = 1e-16
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G+ V + L P+IV LDE +D I + + I+V H L
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHELD 186
Query: 122 TIIH-ADEILVMHAGEIVE 139
+ + G ++
Sbjct: 187 MLNLYKEYKAYFLVGNRLQ 205
Score = 47.0 bits (112), Expect = 2e-06
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQ 199
V +L G +G+GK+T++R + SG+IFI+ ++ +R I
Sbjct: 32 KVIIL--GPNGSGKTTLLRAISGLLP-YSGNIFINGMEVR-----KIRNYIRYSTN 79
Score = 30.8 bits (70), Expect = 0.37
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 30 VEFRNVSFSY---TPERAILKNISFTVPAGKTLALL--SG 64
++ +NV + ER L+NI+ V G+ + +L +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNG 40
Score = 28.9 bits (65), Expect = 1.8
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 14/43 (32%)
Query: 247 VEFRNVSFSY---TPERAILKNISFTVP-----------AGKT 275
++ +NV + ER L+NI+ V +GKT
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKT 44
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 75.6 bits (187), Expect = 1e-16
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAHRL 120
LSGGE+QRVAIAR L P ++ DE T LD+ + + ++ T+I+ V H
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 121 STIIHADEILVMHAGEIVE 139
L M G++V
Sbjct: 201 ELAELTHRTLEMKDGKVVG 219
Score = 38.3 bits (90), Expect = 0.001
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 15/70 (21%)
Query: 138 VERGSLFVSLLQVGQSGAGKST---IIRLLFRFYDV-ESGDIFIDNQNIKTVSQ---ASL 190
V++G FVS+ +G SG+GKST I+ LL D G +F++ + + ++ + L
Sbjct: 27 VKKGE-FVSI--IGASGSGKSTLLYILGLL----DAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 191 R-QAIGVVPQ 199
R + +G V Q
Sbjct: 80 RNRKLGFVFQ 89
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 74.5 bits (184), Expect = 4e-16
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGG++QRVAIAR L P I+L D+ T ALD+KT I L ++ +T ++V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVE 139
++ + I+ + GE+
Sbjct: 206 INVARFGERIIYLKDGEVER 225
Score = 36.8 bits (86), Expect = 0.004
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 138 VERGSLFVSLLQVGQSGAGKST---IIRLLFRFYDV-ESGDIFIDNQNIKTVSQ---ASL 190
++ G FVS+ +G SG+GKST II L D G+++IDN + +
Sbjct: 28 IKEGE-FVSI--MGPSGSGKSTMLNIIGCL----DKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 191 R-QAIGVVPQ 199
R IG V Q
Sbjct: 81 RRDKIGFVFQ 90
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 74.5 bits (184), Expect = 5e-16
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 55 AGKTLALLSGGEKQRVAIARTLL-------KAPQIVLLDEATSALDTKTERNIQSALNRV 107
G++ LSGGE QRV +A +L A Q++LLDE ++LD + + L+ +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 108 CAS-RTTIIVAHRLS-TIIHADEILVMHAGEIVERGS 142
++ +H L+ T+ HA ++ G+++ G
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
Score = 41.4 bits (98), Expect = 1e-04
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
VG +GAGKST++ + G I Q ++ S L + Q
Sbjct: 32 VGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTP 84
Score = 29.1 bits (66), Expect = 1.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 42 ERAILKNISFTVPAGKTLALL 62
E L +S V AG+ L L+
Sbjct: 12 ESTRLGPLSGEVRAGEILHLV 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 73.3 bits (181), Expect = 1e-15
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-------QSALNRVCASRTTI 114
LSGG+KQRV++AR + I L D+ SA+D ++I + L ++T I
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML----KNKTRI 183
Query: 115 IVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQS 153
+V H +S + D I+VM G+I E GS + LL +
Sbjct: 184 LVTHSMSYLPQVDVIIVMSGGKISEMGS-YQELLARDGA 221
Score = 40.6 bits (96), Expect = 2e-04
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 28 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 60
++ RN +F++ + L I+F++P G +A
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVA 35
Score = 40.6 bits (96), Expect = 2e-04
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 245 GAVEFRNVSFSYTP-ERAILKNISFTVPAGKTLA 277
++ RN +F++ + L I+F++P G +A
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVA 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 72.6 bits (179), Expect = 2e-15
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHR 119
LSGGE+QRVA+AR L+ P+++LLDE SA+D KT+ + L V + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 120 LS---TIIHADEILVMHAGEIVERGS 142
L + ADE+ VM G IVE+G
Sbjct: 187 LIEAAML--ADEVAVMLNGRIVEKGK 210
Score = 47.5 bits (114), Expect = 1e-06
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
E G + LL G +GAGKS + L+ + G++ ++ +I + R+ IG V
Sbjct: 20 FEMGRDYCVLL--GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIGFV 75
Query: 198 PQDTVLF 204
PQD LF
Sbjct: 76 PQDYALF 82
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 73.4 bits (181), Expect = 4e-15
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
LSGG++QR A+AR L P+++LLDE SALD + R I+ + + + + V+H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 119 ---RLSTIIHADEILVMHAGEIVERGS 142
L AD I VM G I++ S
Sbjct: 199 REEALQY---ADRIAVMKQGRILQTAS 222
Score = 43.7 bits (104), Expect = 3e-05
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ---ASLRQAI 194
++ G + ++ G SG GK+T++R L F +SG+I + + I + + R+ +
Sbjct: 27 LDPGE-ILFII--GASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR-L 82
Query: 195 GVVPQDTVLF 204
G + Q+ VLF
Sbjct: 83 GYLVQEGVLF 92
Score = 31.0 bits (71), Expect = 0.35
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
A+ ++S S+ L +IS ++ G+ L ++ SG
Sbjct: 4 ALHIGHLSKSFQNTPV-LNDISLSLDPGEILFIIGASG 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 71.4 bits (176), Expect = 8e-15
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RT 112
A + LSGG++Q + IAR + +++LLDE TSALD + + S L + S T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 113 TIIVAHRLSTIIH-ADEILVMHAGEI 137
+ H+ + ++ A++ L+++
Sbjct: 182 VVFTTHQPNQVVAIANKTLLLNKQNF 207
Score = 46.4 bits (111), Expect = 3e-06
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL----SG-------------GEKQRVA 71
A+ N+ F Y E + + ++F + G LA+L G + ++
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 72 IARTLLKAPQIVLLDEATSALDT 94
+ +++ PQ A S LD
Sbjct: 64 VYQSIGFVPQFFSSPFAYSVLDI 86
Score = 41.4 bits (98), Expect = 1e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
A+ N+ F Y E + + ++F + G LA
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILA 35
Score = 35.6 bits (83), Expect = 0.011
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ +G +++L GQ+G GKST++ LL + G I + Q+IG V
Sbjct: 28 LNKGD-ILAVL--GQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFV 71
Query: 198 PQDT 201
PQ
Sbjct: 72 PQFF 75
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 70.3 bits (173), Expect = 4e-14
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKT------E-RNIQSALNRVCASRTTI 114
LSGGE+QRVA+AR L+ P+I+LLDE SALD +T + T +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-----LTVL 182
Query: 115 IVAH----RLSTIIHADEILVMHAGEIVERGS 142
+ H AD I V+ G++++ G
Sbjct: 183 HITHDQTEARIM---ADRIAVVMDGKLIQVGK 211
Score = 46.8 bits (112), Expect = 3e-06
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE G + +L G +GAGK+ + L+ F+ +SG I +D +++ +S I V
Sbjct: 23 VESGE-YFVIL--GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHD-IAFV 77
Query: 198 PQDTVLF 204
Q+ LF
Sbjct: 78 YQNYSLF 84
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 69.6 bits (171), Expect = 8e-14
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
LSGG++QRVA+AR L PQ++L DE +A+DT+ T R + + T++
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-----VTSV 200
Query: 115 IVAH----RLSTIIHADEILVMHAGEIVERGS 142
V H L AD +LV+H G + + G+
Sbjct: 201 FVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229
Score = 44.9 bits (107), Expect = 1e-05
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+ G V LL G SG+GK+TI+RL+ GD++I + + + R +G+V
Sbjct: 38 IREGE-MVGLL--GPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRN-VGLV 92
Query: 198 PQDTVLF 204
Q+ LF
Sbjct: 93 FQNYALF 99
Score = 36.1 bits (84), Expect = 0.009
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL--SG 64
+EF V Y ++ +SF + G+ + LL SG
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSG 51
Score = 30.7 bits (70), Expect = 0.52
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 246 AVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+EF V Y ++ +SF + G+ +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVG 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 67.2 bits (165), Expect = 3e-13
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTIIVAHRL 120
LSGG++QRV+IAR L P ++L DE TSALD + + + ++ +T ++V H +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
H + ++ +H G+I E G
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGD 236
Score = 37.5 bits (88), Expect = 0.002
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQAS-------- 189
G + +S++ G SG+GKST +R + G I ++ QNI V
Sbjct: 29 ARAGDV-ISII--GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 190 -----LRQAIGVVPQDTVLFNN 206
LR + +V Q L+++
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSH 107
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 66.4 bits (163), Expect = 4e-13
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
S G +++ IAR L+ P++ +LDE TS LD R ++ L + TI+ +S
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL----VS 202
Query: 122 TIIH--------ADEILVMHAGEIVERGSL 143
+ H D I ++H G IVE G++
Sbjct: 203 S--HNMLEVEFLCDRIALIHNGTIVETGTV 230
Score = 45.2 bits (108), Expect = 6e-06
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E G +F L+ G +GAGK+T +R++ SG + + +N+ +R+ I +
Sbjct: 38 IEEGEIF-GLI--GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYL 93
Query: 198 PQDTVLFNN 206
P++ + N
Sbjct: 94 PEEAGAYRN 102
Score = 28.7 bits (65), Expect = 1.8
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
AV +++ + LK ISF + G+ L+
Sbjct: 15 AVVVKDLRKRIGKKEI-LKGISFEIEEGEIFGLI 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 65.2 bits (160), Expect = 7e-13
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAHRL 120
LS G +RV +A TLL +I +LD+ A+D ++ + ++ + + II +
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 121 STIIHADEILVMHAGEIVERG 141
+ D +H
Sbjct: 194 LSY--CDVNENLHKYSTKIDK 212
Score = 51.0 bits (123), Expect = 6e-08
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
+E+G++ + G +G GK+T+++ + + G+I + I V + I +
Sbjct: 32 IEKGNVV-NFH--GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFL 83
Query: 198 PQDTVLFNN 206
P++ ++
Sbjct: 84 PEEIIVPRK 92
Score = 29.0 bits (66), Expect = 1.2
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 29 AVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+E R++S Y ++ +L+ I+ T+ G +
Sbjct: 10 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFH 41
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 64.5 bits (158), Expect = 2e-12
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALN--RVCASR--TTIIVA 117
LSGG+ QRVAIAR L P+I+L DE TSALD + + L+ + A+ T ++V
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM---VGEVLSVMKQLANEGMTMVVVT 216
Query: 118 H-----RLSTIIHADEILVMHAGEIVERGS 142
H R D +L M G I+E G
Sbjct: 217 HEMGFAREV----GDRVLFMDGGYIIEEGK 242
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQASLRQAIG 195
+ G + V + G SG+GKST +R L D + G+I ID N+ K + +R+ +G
Sbjct: 47 IREGEVVVVI---GPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103
Query: 196 VVPQDTVLFNN 206
+V Q LF +
Sbjct: 104 MVFQRFNLFPH 114
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 60.8 bits (147), Expect = 1e-10
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 17/136 (12%)
Query: 8 LQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFT--VPAGKTLALLSGG 65
+ +D+ +A + + + + + LSGG
Sbjct: 854 HSKMVAEVDMKEALASGQFRPLTRKE--------IEEHCSMLGLDPEIVSHSRIRGLSGG 905
Query: 66 EKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR---LST 122
+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKN 963
Query: 123 IIHADEILVMHAGEIV 138
+ +E+ + G +
Sbjct: 964 L--TEEVWAVKDGRMT 977
Score = 53.5 bits (128), Expect = 3e-08
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
LSGG K ++A+AR +L+ I+LLDE T+ LDT + + LN T+I ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Score = 27.3 bits (60), Expect = 7.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFI-DNQNIKTVSQASLRQ 192
+G +GAGKST+I +L SG+++ +N I + Q +
Sbjct: 705 IGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 59.2 bits (144), Expect = 2e-10
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 17/91 (18%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK------TE-RNIQSALNRVCASRTTI 114
LSG ++QRVA+AR L+K P ++LLDE S LD + + +QS L T +
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-----VTLL 195
Query: 115 IVAHRLS---TIIHADEILVMHAGEIVERGS 142
+V+H + I AD + V+ G++V+ G
Sbjct: 196 VVSHDPADIFAI--ADRVGVLVKGKLVQVGK 224
Score = 39.9 bits (94), Expect = 6e-04
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
+ +G SGAGK+T +R++ +G+++ D++ +
Sbjct: 33 RFGI--LGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 53.8 bits (130), Expect = 2e-08
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 23/94 (24%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
LSGG++QRVAIAR L+K P+++LLDE S LD R+ R + L
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL---------RL-EVRAELKRLQKEL 183
Query: 121 -STII---H--------ADEILVMHAGEIVERGS 142
T + H AD I V+ GEI++ G+
Sbjct: 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
Score = 36.4 bits (85), Expect = 0.007
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
F++L +G SG+GKST++ + Y SG I+ D +++ +
Sbjct: 31 FMAL--LGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL 70
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 53.0 bits (128), Expect = 3e-08
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
LSGG++QRVA+AR L+K P+++L DE S LD R+ R I L
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL---------RM-IMRAEIKHLQQEL 183
Query: 121 -STII---H--------ADEILVMHAGEIVERGS 142
T + H A I V + G++V+ G+
Sbjct: 184 GITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
Score = 36.0 bits (84), Expect = 0.010
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
FV+L +G SG GK+T + +L Y SG+I+ D+
Sbjct: 31 FVAL--LGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV 65
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 50.1 bits (120), Expect = 4e-08
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKA------PQIVLLDEATSALDTKTERNIQSALNR-VC 108
+ L LSGGE+ + +A L + +++LDE T LD + R + + + R +
Sbjct: 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111
Query: 109 ASRTTIIVAHRLSTIIHADEILVM------HAGEIV 138
I+V+H AD ++ + E+V
Sbjct: 112 KIPQVILVSHDEELKDAADHVIRISLENGSSKVEVV 147
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 52.2 bits (126), Expect = 5e-08
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 23/89 (25%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
LSGG++QRVA+AR ++ P ++L+DE S LD K RV A R I +L
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL---------RV-AMRAEIKKLQQKL 191
Query: 121 -STII---H--------ADEILVMHAGEI 137
T I H D I VM+ G++
Sbjct: 192 KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220
Score = 34.5 bits (80), Expect = 0.031
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
F+ L +G SG GK+T +R++ + G I+ ++
Sbjct: 39 FLVL--LGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 73
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 51.5 bits (124), Expect = 1e-07
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
LSGG++QRVA+ R +++ PQ+ L+DE S LD K RV R + +L
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL---------RV-RMRAELKKLQRQL 189
Query: 121 -STII---H--------ADEILVMHAGEI 137
T I H D I VM+ G +
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
Score = 33.7 bits (78), Expect = 0.054
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
F+ L +G SG GK+T +R++ + G I+I ++
Sbjct: 31 FMIL--LGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 51.0 bits (123), Expect = 1e-07
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 23/89 (25%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH-RL 120
LSGG++QRVAI RTL+ P + LLDE S LD L RV R I H RL
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA--------L-RV-QMRIEISRLHKRL 183
Query: 121 -STII---H--------ADEILVMHAGEI 137
T+I H AD+I+V+ AG +
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
Score = 32.5 bits (75), Expect = 0.14
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ 180
VG SG GKST++R++ + SGD+FI +
Sbjct: 35 VGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 49.7 bits (118), Expect = 4e-07
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 62 LSGGEKQRV------AIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS-RTTI 114
LSGGE+ + A++ L +++LDE T LD + R + + + R I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 115 IVAHRLSTIIHADEILVM------HAGEIV 138
+V+H AD ++ + E+V
Sbjct: 309 LVSHDEELKDAADHVIRISLENGSSKVEVV 338
Score = 28.5 bits (63), Expect = 2.6
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 150 VGQSGAGKSTIIR-LLFRFYDVESGDIFIDNQNIK 183
+GQ+G+GKS+++ +L Y ++ K
Sbjct: 29 IGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK 63
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 45.9 bits (110), Expect = 4e-06
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-----V 116
LSGGE+Q +AI R L+ P+++++DE + L + + ++ TTI+
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 117 AHRLSTIIHADEILVMHAGEIVERGS 142
L A V+ G+IV G
Sbjct: 200 LGALK---VAHYGYVLETGQIVLEGK 222
Score = 40.1 bits (95), Expect = 4e-04
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL-RQAIGV 196
V RG + V+L+ G +GAGK+T + + + G I + Q+I + R I +
Sbjct: 29 VPRGQI-VTLI--GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85
Query: 197 VPQ 199
VP+
Sbjct: 86 VPE 88
Score = 30.5 bits (70), Expect = 0.48
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 19 QAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALL 62
+L E +++ Y A +K I VP G+ + L+
Sbjct: 3 SDIVL-------EVQSLHVYYGAIHA-IKGIDLKVPRGQIVTLI 38
Score = 26.6 bits (60), Expect = 8.3
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 236 QAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 277
+L E +++ Y A +K I VP G+ +
Sbjct: 3 SDIVL-------EVQSLHVYYGAIHA-IKGIDLKVPRGQIVT 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 5e-06
Identities = 39/264 (14%), Positives = 85/264 (32%), Gaps = 86/264 (32%)
Query: 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLAL 61
EN ++ ET + + + + S+++ E+ +L FT PA L L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIF----KEINEHSTSYTFRSEKGLLSATQFTQPA---LTL 1738
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEAT--------SALDTKTERNIQSALNRVCASRTT 113
+ A LK+ ++ D +AL
Sbjct: 1739 ME------KAAFE-DLKSKGLIPADATFAGHSLGEYAAL--------------AS----- 1772
Query: 114 IIVAHRLSTIIHADEILVMHAGEIV-ERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVES 172
+A +S + E+V RG + + G +I +
Sbjct: 1773 --LADVMSI---ESLV------EVVFYRGMTMQVAVPRDELGRSNYGMIA-------INP 1814
Query: 173 GDIFIDNQNIKTVSQASLRQAIGVVPQDT--VL----FNNS---------IKAIQKNFVD 217
G + + SQ +L+ + V + T ++ +N ++A+
Sbjct: 1815 GRV------AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT---- 1864
Query: 218 MENMFDLLQE-TCDVIDIPQAPML 240
+ N+ + ++ D+I++ ++ L
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 42.0 bits (98), Expect = 2e-04
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 74/219 (33%)
Query: 6 DLLQETCDV-IDIPQAPMLCVA-------QGAVEFRNVSFSYTPERAI---LKN--ISFT 52
+L+++ + +P +PML ++ Q V N + + L N +
Sbjct: 322 SILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLP--AGKQVEISLVNGAKNLV 378
Query: 53 VPAG--KTLALL----------SGGEKQRVAIARTLLKAPQIV-------------LLDE 87
V +G ++L L SG ++ R+ + + + LL
Sbjct: 379 V-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPVASPFHSHLLVP 434
Query: 88 ATSAL---------------------DTKTERNIQSALNRVCASRTTIIVAHRL----ST 122
A+ + DT +++ + I+ + +T
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 123 IIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTII 161
A IL G G L G G I+
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKD----GTGVRVIV 529
Score = 41.2 bits (96), Expect = 3e-04
Identities = 42/266 (15%), Positives = 92/266 (34%), Gaps = 66/266 (24%)
Query: 27 QGAV-----EFRNVSFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQ 81
QG E R++ Y ++ + +TL+ L + + + +
Sbjct: 163 QGNTDDYFEELRDL---YQTYHVLVG--DLIKFSAETLSELI---RTTLDAEKVFTQGLN 214
Query: 82 IV-LLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVER 140
I+ L+ ++ D + L + S +I +L+ + ++L GE+
Sbjct: 215 ILEWLENPSNTPD-------KDYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 141 GSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
G +G + + + D S + F + +R+AI
Sbjct: 267 LK--------GATGHSQGLVTAVAIAETD--SWESFFVS----------VRKAI------ 300
Query: 201 TVLFNNSIKAIQKNFVDMENMFDLLQETCDV-IDIPQAPMLCVA-------QGAVEFRNV 252
TVLF ++ + + + +L+++ + +P +PML ++ Q V N
Sbjct: 301 TVLFFIGVRC-YEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNS 358
Query: 253 SFSYTPERAI---LKN--ISFTVPAG 273
+ + L N + V +G
Sbjct: 359 HLP--AGKQVEISLVNGAKNLVV-SG 381
Score = 31.2 bits (70), Expect = 0.45
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 44/140 (31%)
Query: 149 QVG-QS-GAGK-----STIIRLLFRFYDVESGDIF------IDNQNIKTVSQASLRQAIG 195
Q G Q G G S + ++ D D + I N +
Sbjct: 1624 Q-GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL---------- 1672
Query: 196 VVPQDTVLFNNSI-KAIQKNFVDM--ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNV 252
T+ F K I++N+ M E + D +T + + +
Sbjct: 1673 -----TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK------------EINEHST 1715
Query: 253 SFSYTPERAILKNISFTVPA 272
S+++ E+ +L FT PA
Sbjct: 1716 SYTFRSEKGLLSATQFTQPA 1735
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 45.2 bits (108), Expect = 8e-06
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
SGGEK+R I + L+ P +LDE S LD + + +N + + +++ H R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204
Query: 120 LSTIIHADEILVMHAGEIVERG 141
+ I D++ VM G +V G
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATG 226
Score = 29.4 bits (67), Expect = 1.0
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 151 GQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNI 182
G +GAGKST+ ++L Y VE G+I +D +NI
Sbjct: 36 GPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 44.8 bits (107), Expect = 1e-05
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH--R 119
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H R
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225
Query: 120 LSTIIHADEILVMHAGEIVERG 141
+ I D + V++ G IV+ G
Sbjct: 226 ILDYIKPDYVHVLYQGRIVKSG 247
Score = 29.8 bits (68), Expect = 0.87
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 151 GQSGAGKSTIIRLLF--RFYDVESGDIFIDNQNI 182
G +G+GKST+ L Y+V G + +++
Sbjct: 53 GPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 42.3 bits (100), Expect = 4e-05
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 23/98 (23%)
Query: 54 PAGK---TLALLSGGEKQRVAIART----LLKAPQIVLLDEATSALDTKTERNIQSALNR 106
PAGK + +SGGEK A+A K L DE + LD + N++ R
Sbjct: 54 PAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD---DANVK----R 106
Query: 107 VCA-----SRTT--IIVAHRLSTIIHADEIL--VMHAG 135
V S+ + I++ R + +AD+I+ M G
Sbjct: 107 VADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDG 144
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 42.5 bits (101), Expect = 5e-05
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTI-IVAHRL 120
LSGG+ + V I R L+ P+++++DE + + +I + + + A T I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
+++ D + VM G+I+ G
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEGR 236
Score = 35.2 bits (82), Expect = 0.015
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
V +G + + +G +G+GKST+I ++ F + G ++ +N++I
Sbjct: 30 VNKGDV-TLI--IGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.9 bits (101), Expect = 6e-05
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 62 LSGGEKQRV------AIARTLLKAP-QIVLLDEATSALDTKTERNIQSALNRVCASRTTI 114
LSGGE+ V AIA L+ + ++LDE T LD + +V + I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 115 IVAHRLSTIIHADEIL 130
I+ H AD I+
Sbjct: 341 IITHHRELEDVADVII 356
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 27/97 (27%)
Query: 49 ISFTV-PAGK---TLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALDTKTER 98
I + P K + LSGGEK A+A LL A +LDE +ALD
Sbjct: 317 IKYHATPPLKRFKDMEYLSGGEKTVAALA--LLFAINSYQPSPFFVLDEVDAALD---IT 371
Query: 99 NIQSALNRVC------ASRTT--IIVAHRLSTIIHAD 127
N+Q R+ + I+++ + + +D
Sbjct: 372 NVQ----RIAAYIRRHRNPDLQFIVISLKNTMFEKSD 404
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 40.7 bits (96), Expect = 2e-04
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 54 PAGK---TLALLSGGEKQRVAIARTLLKAPQIV------LLDEATSALD-TKTERNIQSA 103
G+ L+LLSGGEK V +A LL A + +LDE S LD ER +
Sbjct: 209 KPGRRDQKLSLLSGGEKALVGLA--LLFALMEIKPSPFYVLDEVDSPLDDYNAER-FKRL 265
Query: 104 LNRVCASRTTIIVAHRLSTIIHADEIL--VMHAG 135
L I++ H + AD + M G
Sbjct: 266 LKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 4e-04
Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 74/302 (24%)
Query: 12 CDVIDIP-QA----PMLCVAQGAV--EFRNVS--FSYTPERAILKNISFTVPAGKTLALL 62
C D+P + P + + + + I +L +L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE------SSLNVL 366
Query: 63 SGGEKQRV----AIARTLLKAPQIVL------LDEATSALDTKTERNIQSALNRVCASRT 112
E +++ ++ P I+L + ++ + S + + T
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKEST 425
Query: 113 TIIVAHRLSTIIHADEILVMHAGEIVERGSL--------------------FVS--LLQV 150
I + L + + +H IV+ ++ + L +
Sbjct: 426 ISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKA 210
+ T+ R++ F D F++ K ++ A G + +T+ +K
Sbjct: 485 EH--PERMTLFRMV--FLDFR----FLEQ---KIRHDSTAWNASGSI-LNTL---QQLKF 529
Query: 211 IQKNFVDMENMFDLLQETCDVID-IPQA-------PMLCVAQGAVEFRNVSFSYTPERAI 262
+ D + ++ L ++D +P+ + + A+ + + + +
Sbjct: 530 YKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 263 LK 264
+
Sbjct: 588 QR 589
Score = 38.7 bits (89), Expect = 0.002
Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 76/251 (30%)
Query: 65 GEKQRVAIARTLLKAPQIVLLDEATSA----LDTKTERN---IQSALNRVC--ASRTTII 115
K V+ L LL + ++ N + S + S T +
Sbjct: 56 MSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGSLFVSL------LQV-------GQSGAGKSTIIR 162
+ + + +++ + V R ++ L L+ G G+GK+ +
Sbjct: 112 YIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 163 LLFRFYDVE---SGDIF-IDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIKAIQKNFVDM 218
+ Y V+ IF + + NS + + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL------NLKNC-----------------NSPETV------L 199
Query: 219 ENMFDLL----QETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA--ILKNI------ 266
E + LL D L + E R + S E +L N+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 267 -SFTVPAGKTL 276
+F + K L
Sbjct: 260 NAFNLSC-KIL 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.5 bits (80), Expect = 0.025
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 191
++ GQSG GKS+++ + ++T +S+ R
Sbjct: 175 TTVF-AGQSGVGKSSLLNAI------------SPELGLRTNEISEHLGR 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.4 bits (80), Expect = 0.027
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDI 175
+S + G SG GKS+++ + + ++
Sbjct: 171 ISTM-AGLSGVGKSSLLNAINPGLKLRVSEV 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 34.0 bits (79), Expect = 0.031
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 137 IVERGSLFV-SLLQVGQSGAGKSTIIRLLFRFYD 169
+ ERG L V S G SG GK T+ +F+ +
Sbjct: 4 MTERGLLIVLS----GPSGVGKGTVREAVFKDPE 33
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 34.1 bits (79), Expect = 0.042
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 16/49 (32%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLR 191
+ +L G SG GKS+I+ L + ++T VS+ + R
Sbjct: 167 ICIL-AGPSGVGKSSILSRL-------------TGEELRTQEVSEKTER 201
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 34.0 bits (77), Expect = 0.043
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
+ G F +L+ VG+SG GKST+I LF
Sbjct: 3 LGSGFEF-TLMVVGESGLGKSTLINSLFL 30
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 33.2 bits (77), Expect = 0.050
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 139 ERGSLFV-SLLQVGQSGAGKSTIIRLLFRFYD 169
E+G L V S G SG GK T+ + +F
Sbjct: 4 EKGLLIVLS----GPSGVGKGTVRKRIFEDPS 31
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 34.0 bits (79), Expect = 0.052
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 27/100 (27%)
Query: 62 LSGGEKQRVAIARTLLKAPQI------VL--LDEATSAL---DTKTERNIQSALNRVCAS 110
LS GE QR+ +A T Q+ V+ LDE ++ L D TE + AL +
Sbjct: 380 LSPGELQRLRLA-T-----QLYSNLFGVVYVLDEPSAGLHPAD--TEALLS-ALENLKRG 430
Query: 111 -RTTIIVAHRLSTIIHADEILVM------HAGEIVERGSL 143
+ +V H L I AD ++ + GEI+ G
Sbjct: 431 GNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPP 470
Score = 33.6 bits (78), Expect = 0.070
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNR-VCASRTTIIVA 117
LSGGE QR+ +A L ++ + + +LDE T+ L +Q L + V A T I V
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 118 HRLSTIIHADEILVM------HAGEIVERG 141
H++ + +D +L + G +V +G
Sbjct: 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.4 bits (77), Expect = 0.075
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 145 VSLLQVGQSGAGKSTII-RLLFRFYDVESGDI 175
+S+ GQSG GKS+++ LL ++ + D+
Sbjct: 217 ISIF-AGQSGVGKSSLLNALLGLQNEILTNDV 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.080
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 66 EKQRVAIARTLLK--APQIVLLDEATS-ALDTKTE 97
EKQ + + LK A D A + A+ E
Sbjct: 18 EKQALKKLQASLKLYAD-----DSAPALAIKATME 47
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.9 bits (74), Expect = 0.088
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 137 IVERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
V++G F +L+ VG+SG GKST+I LF
Sbjct: 12 SVKKGFEF-TLMVVGESGLGKSTLINSLFL 40
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 32.5 bits (75), Expect = 0.093
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 135 GEIVERGSLFV-SLLQVGQSGAGKSTIIRLLFR 166
G+ G + V S G S GKST++R L
Sbjct: 14 GQPAAVGRVVVLS----GPSAVGKSTVVRCLRE 42
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 32.1 bits (74), Expect = 0.13
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLFRFYD 169
R V G SG GK T+I+ + +
Sbjct: 11 RIPPLVVC----GPSGVGKGTLIKKVLSEFP 37
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 32.4 bits (75), Expect = 0.15
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
LSGGE QR+ +A L K + +LDE T L + R + L+R+ T+IV
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 118 HRLSTIIHADEILVM------HAGEIVERG 141
H L I +AD I+ + G IV G
Sbjct: 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATG 895
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.1 bits (73), Expect = 0.15
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 62 LSGGEKQRV--AIARTLLKAPQIVL----LDEATSALDTKTERNIQSALNRVCASRTTII 115
LSGGE+ + ++A +L + L +DE S+LDT+ + I S L + I+
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 116 VAHRLSTIIHADEI 129
I H E
Sbjct: 340 F------ITHDREF 347
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 31.7 bits (73), Expect = 0.18
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLFRFYD 169
V S G SGAGKST+++ LF+ +
Sbjct: 3 GPRPVVLS----GPSGAGKSTLLKKLFQEHS 29
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.4 bits (70), Expect = 0.23
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIK 183
+++L GQSGAGK+TI R+ + + + + ID + +
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQK--EFQGNIVIIDGDSFR 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 31.4 bits (72), Expect = 0.24
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLFRFYD 169
V G SG GK T+I+ L +
Sbjct: 22 NIYPLVIC----GPSGVGKGTLIKKLLNEFP 48
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 0.31
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 137 IVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGV 196
V +G F ++L VG++G GKST++ LF N + + + +
Sbjct: 36 SVSQGFCF-NILCVGETGLGKSTLMDTLF-------------NTKFEGEPATHTQPGVQL 81
Query: 197 VPQDTVLFNNSIKAIQKNFVD 217
L ++++ ++ V
Sbjct: 82 QSNTYDLQESNVR-LKLTIVS 101
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 31.0 bits (71), Expect = 0.35
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 5/28 (17%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLFR 166
+G+L++ S SGAGKS++I+ L +
Sbjct: 15 QGTLYIVS----APSGAGKSSLIQALLK 38
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 0.47
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 137 IVERGSLFV-SLLQVGQSGAGKSTIIRLLFR 166
+ G + V S SG GK+T+ L
Sbjct: 23 LKSVGVILVLS----SPSGCGKTTVANKLLE 49
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.3 bits (68), Expect = 0.48
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 147 LLQVGQSGAGKSTIIRLLF 165
+L +G +GKS+I +++F
Sbjct: 23 ILLMGLRRSGKSSIQKVVF 41
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 30.2 bits (69), Expect = 0.50
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 140 RGSLFV-SLLQVGQSGAGKSTIIRLLFR 166
+ +LF+ S SGAGK++++R L +
Sbjct: 6 KANLFIIS----APSGAGKTSLVRALVK 29
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.6 bits (68), Expect = 0.51
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 137 IVERGSLFVSLLQVGQSGAGKSTIIRLLF 165
V+RG F +L+ VG+SG GKST+I LF
Sbjct: 25 SVKRGFEF-TLMVVGESGLGKSTLINSLF 52
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 0.57
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 153 SGAGKSTIIRLLFRFYD 169
SG GKST+++ LF Y
Sbjct: 10 SGTGKSTLLKKLFAEYP 26
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.6 bits (70), Expect = 0.66
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
LSGGE QRV +A L + + +LDE T+ L + L+R+ + T++V
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 118 HRLSTIIHADEILVM------HAGEIVERG 141
H L I AD I+ + G+IV G
Sbjct: 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 29.7 bits (67), Expect = 0.75
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 8/38 (21%)
Query: 151 GQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIK 183
G KST+ L + G F ++
Sbjct: 8 GPDCCFKSTVAAKLSKELKYPIIK---GSSFELAKSGN 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 30.2 bits (69), Expect = 0.93
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
LSGGE QRV +A L K + +LDE T+ L R + + +N + T+IV
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 118 HRLSTIIHADEILVM------HAGEIVERG 141
H L I +D I+ + G +V +G
Sbjct: 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQG 953
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.2 bits (68), Expect = 0.95
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 150 VGQSGAGKSTIIRLL 164
VG++G GK+ + +
Sbjct: 929 VGKAGCGKTATWKTV 943
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.0 bits (66), Expect = 1.0
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYD 169
VG GAGKSTI R L FYD
Sbjct: 10 VGPMGAGKSTIGRQLAQQLNMEFYD 34
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 1.1
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCASRTTIIV-A 117
LSGGE QRV +A L + + +LDE T+ L + L+R+ + T++V
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 118 HRLSTIIHADEILVM------HAGEIVERG 141
H L I AD I+ + G+IV G
Sbjct: 604 HNLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 29.4 bits (65), Expect = 1.3
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 137 IVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESG--DIFIDNQNIKTVSQA 188
+ G + +G+ G GK+ +R L+ Y ++ ++I+ + +
Sbjct: 37 LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 90
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 28.7 bits (65), Expect = 1.4
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYD 169
+G GAGK+++ L YD
Sbjct: 11 IGLMGAGKTSVGSQLAKLTKRILYD 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 28.7 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTV 185
++ VG SG GK+ LL RF D F+ I TV
Sbjct: 13 VMLVGDSGVGKTC---LLVRFKD----GAFLAGTFISTV 44
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 28.9 bits (64), Expect = 1.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 147 LLQVGQSGAGKSTIIRLLF 165
+L +G GKS+I +++F
Sbjct: 2 VLLMGVRRCGKSSICKVVF 20
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.8 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT 184
+ L GQ G+GK+++ +F + + I IDN K
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFE--ETQGNVIVIDNDTFKQ 71
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 1.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 147 LLQVGQSGAGKSTIIRLLF 165
LL +G+SG+GKS++ ++F
Sbjct: 6 LLLMGRSGSGKSSMRSIIF 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 28.4 bits (64), Expect = 2.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
G GAGK+T+ + F D+ D +I+ + KTV +
Sbjct: 31 TGYMGAGKTTLGKAFARKLNVPFIDL---DWYIEERFHKTVGE 70
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.9 bits (63), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYD 169
VG G G +T+ R L + F D
Sbjct: 8 VGARGCGMTTVGRELARALGYEFVD 32
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.0 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 151 GQSGAGKSTIIRLLFRFYDVE---SGDIFIDN 179
G +G GKST + L D GDI
Sbjct: 9 GPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM 40
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYD 169
VG G+GKSTI R L D
Sbjct: 8 VGLPGSGKSTIGRRLAKALGVGLLD 32
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.0 bits (63), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 133 HAGEIVERGSLFVSL--------LQVGQSGAGKSTII 161
H+ +V RGSLF + L VG AGK+TI+
Sbjct: 10 HSSGLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTIL 46
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET:
ACO; 2.00A {Streptomyces rubellomurinus}
Length = 286
Score = 28.2 bits (62), Expect = 2.9
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 178 DNQNIKTVSQASLRQA---IGVVPQDTVLFNNSIKAIQKNFVDMENMFDLLQETC 229
D Q+ + V++ L +GV P +L + S+ A+ + + LQ+
Sbjct: 15 DRQDRELVTRDRLASDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAV 69
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 27.5 bits (62), Expect = 3.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
+G G+GKST+ R L F D D I+ + + VS+
Sbjct: 10 IGFMGSGKSTLARALAKDLDLVFLDS---DFLIEQKFNQKVSE 49
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 27.4 bits (62), Expect = 3.7
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 140 RGSLFVSLLQVGQSGAGKSTIIRLLFRFYD 169
V L +G G G+ I L +
Sbjct: 4 MRKTLV--L-LGAHGVGRRHIKNTLITKHP 30
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 27.6 bits (61), Expect = 3.8
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 6/27 (22%)
Query: 151 GQSGAGKSTIIRLL------FRFYDVE 171
G G GK+ L ++ E
Sbjct: 12 GPFGVGKTHTAHTLHERLPGSFVFEPE 38
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.2 bits (61), Expect = 4.4
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 139 ERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
+ V +G SG G+S I L
Sbjct: 17 QGRKTLVL---IGASGVGRSHIKNALLS 41
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 27.1 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDV 170
+G +GKST+ LL FYDV
Sbjct: 6 IGFMCSGKSTVGSLLSRSLNIPFYDV 31
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 27.7 bits (61), Expect = 4.7
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 11/51 (21%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
+G G+GKST R N +++ RQ+I +
Sbjct: 8 IGCPGSGKSTWAREFIA-----------KNPGFYNINRDDYRQSIMAHEER 47
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 27.4 bits (61), Expect = 4.8
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTV 202
FV L V A ++ F+ YD+ FI+ + +K + A L ++ V+ +D +
Sbjct: 96 FVRSLGVFHPSAPVHEKVKFAFKLYDLR-QTGFIEREELKEMVVALLHESELVLSEDMI 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 27.1 bits (61), Expect = 4.9
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 154 GAGKSTIIRLL-----FRFYDVESGDIFIDNQNIKTVSQ 187
G+GKS++ + L D D+ I + +V +
Sbjct: 17 GSGKSSLAQELGLALKLEVLDT---DMIISERVGLSVRE 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 27.2 bits (60), Expect = 5.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVE--SGDIF 176
G GK+T+ + L + S D F
Sbjct: 11 TGHPATGKTTLSQALATGLRLPLLSKDAF 39
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.4 bits (60), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESG 173
G++G+GKS+ I L + E G
Sbjct: 75 TGETGSGKSSFINTLRGIGNEEEG 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.0 bits (59), Expect = 5.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
G G+GKSTI L V D+
Sbjct: 16 GHPGSGKSTIAEALANLPGVPKVHFHSDD 44
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 27.1 bits (60), Expect = 5.5
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQD 200
G G GKST + L + + +N ++ + +R++ V +
Sbjct: 10 TGLPGVGKSTFSKNLAKI-------LSKNNIDVIVLGSDLIRESFPVWKEK 53
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.5 bits (60), Expect = 6.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 127 DEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFR 166
+ + V++G F +L+ VG+SG GKST+I LF
Sbjct: 21 ANLPNQVHRKSVKKGFEF-TLMVVGESGLGKSTLINSLFL 59
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFID 178
G S AGKS I+R L +D
Sbjct: 10 GGSSAGKSGIVRCLQSVLPEPWLAFGVD 37
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 26.9 bits (59), Expect = 7.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 150 VGQSGAGKSTII-RLLFRFYDVESGDIFIDNQN 181
+ + GAGKS LL R Y S I ID +
Sbjct: 41 LAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 26.6 bits (58), Expect = 7.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDN 179
G G GKST++ + D + + I N
Sbjct: 7 TGIPGVGKSTVLAKVKEILDNQGINNKIIN 36
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 26.6 bits (59), Expect = 7.8
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Query: 150 VGQSGAGKSTIIRLL-----FRFYDV 170
VG G+GK+T+ +++ + F+D
Sbjct: 54 VGMMGSGKTTVGKIMARSLGYTFFDC 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 26.5 bits (59), Expect = 9.1
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 17/51 (33%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFY--------------DVESGDIFIDNQNIK 183
L+ VG G GK+T + R +V + IK
Sbjct: 18 LVLVGDGGTGKTT---FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 26.4 bits (59), Expect = 9.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 154 GAGKSTIIRLL 164
AGKST R L
Sbjct: 19 RAGKSTQSRKL 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.374
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,063,780
Number of extensions: 239778
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 307
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)