BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18011
(163 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly-stacking protein 2 OS=Homo sapiens GN=GORASP2 PE=1
SV=3
Length = 452
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSPG +AGLE FFDFIV+I+ RL++DNDTLK+LLK ++K +KM +YSSKT ++R
Sbjct: 22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct: 82 TSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141
Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
L L++ K LK+ VY++ T + R V ITP+++WGG+G LG I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L++DNDTLK+LLK ++K +KM +YSSKT ++R ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 48 LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDG 107
Query: 155 ANENVWHIL 163
ANENVWH+L
Sbjct: 108 ANENVWHVL 116
>sp|Q99JX3|GORS2_MOUSE Golgi reassembly-stacking protein 2 OS=Mus musculus GN=Gorasp2 PE=1
SV=3
Length = 451
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 119/175 (68%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSPG +AGLE FFDFIV+I+ RL++DNDTLK+LLK ++K +KM +YSSKT ++R
Sbjct: 22 VQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct: 82 ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141
Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
L L++ K LK+ VY++ T + R V ITP+++WGG+G LG I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L++DNDTLK+LLK ++K +KM +YSSKT ++R ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 48 LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELREASVTPSNLWGGQGLLGVSIRFCSFDG 107
Query: 155 ANENVWHIL 163
ANENVWH+L
Sbjct: 108 ANENVWHVL 116
>sp|Q9R064|GORS2_RAT Golgi reassembly-stacking protein 2 OS=Rattus norvegicus GN=Gorasp2
PE=1 SV=3
Length = 454
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSPG +AGLE FFDFIV+I RL++DNDTLK+LLK ++K +KM +YSSKT ++R
Sbjct: 22 VQENSPGHRAGLEPFFDFIVSISGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRE 81
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
++TPSN WGGQGLLGVSIRFCSF+GANENVWH+L+ ++++
Sbjct: 82 ASVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADT 141
Query: 102 -------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
L L++ K LK+ VY++ T + R V ITP+++WGG+G LG I +
Sbjct: 142 VMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGY 196
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L++DNDTLK+LLK ++K +KM +YSSKT ++R ++TPSN WGGQGLLGVSIRFCSF+G
Sbjct: 48 LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELREASVTPSNLWGGQGLLGVSIRFCSFDG 107
Query: 155 ANENVWHIL 163
ANENVWH+L
Sbjct: 108 ANENVWHVL 116
>sp|Q9BQQ3|GORS1_HUMAN Golgi reassembly-stacking protein 1 OS=Homo sapiens GN=GORASP1 PE=1
SV=3
Length = 440
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK ++K +K+ V++ KT VR
Sbjct: 22 VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMRVRE 81
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
V + PSN WGGQGLLG S+RFCSF A+E VWH+LD
Sbjct: 82 VEVVPSNMWGGQGLLGASVRFCSFRRASEQVWHVLDVEPSSPAALAGLRPYTDYVVGSDQ 141
Query: 97 --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
Q+++ L+++ K LK+ VY+SK+ R V +TP+ +WGG+G LG I +
Sbjct: 142 ILQESEDFFTLIESHEGKPLKLMVYNSKSDSCREVTVTPNAAWGGEGSLGCGIGY 196
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 53/69 (76%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L+++NDTLK LLK ++K +K+ V++ KT VR V + PSN WGGQGLLG S+RFCSF
Sbjct: 48 LNKENDTLKALLKANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRR 107
Query: 155 ANENVWHIL 163
A+E VWH+L
Sbjct: 108 ASEQVWHVL 116
>sp|Q91X51|GORS1_MOUSE Golgi reassembly-stacking protein 1 OS=Mus musculus GN=Gorasp1 PE=2
SV=3
Length = 446
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK ++K +K+ V++ KT VR
Sbjct: 21 VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMKVRE 80
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
V + PSN WGGQGLLG S+RFCSF A+E+VWH+LD
Sbjct: 81 VEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEPSSPAALAGLCPYTDYIVGSDQ 140
Query: 97 --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
Q+++ L+++ K LK+ VY+S++ R V +TP+ +WGG+G LG I +
Sbjct: 141 ILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTPNAAWGGEGSLGCGIGY 195
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L+++NDTLK LLK ++K +K+ V++ KT VR V + PSN WGGQGLLG S+RFCSF
Sbjct: 47 LNKENDTLKALLKANVEKPVKLEVFNMKTMKVREVEVVPSNMWGGQGLLGASVRFCSFRR 106
Query: 155 ANENVWHIL 163
A+E+VWH+L
Sbjct: 107 ASEHVWHVL 115
>sp|O35254|GORS1_RAT Golgi reassembly-stacking protein 1 OS=Rattus norvegicus GN=Gorasp1
PE=1 SV=4
Length = 451
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 26/175 (14%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
VQ+NSP Q+AGLE +FDFI+ I + RL+++NDTLK LLK ++K +K+ V++ KT VR
Sbjct: 21 VQENSPAQQAGLEPYFDFIITIGHSRLNKENDTLKALLKANVEKPVKLEVFNMKTMRVRE 80
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILD------------------------ 96
V + PSN WGGQGLLG S+RFCSF A+E+VWH+LD
Sbjct: 81 VEVVPSNMWGGQGLLGASVRFCSFRRASEHVWHVLDVEPSSPAALAGLRPYTDYIVGSDQ 140
Query: 97 --QDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRF 149
Q+++ L+++ K LK+ VY+S++ R V +TP+ +WGG+G LG I +
Sbjct: 141 ILQESEDFFTLIESHEGKPLKLMVYNSESDSCREVTVTPNAAWGGEGSLGCGIGY 195
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEG 154
L+++NDTLK LLK ++K +K+ V++ KT VR V + PSN WGGQGLLG S+RFCSF
Sbjct: 47 LNKENDTLKALLKANVEKPVKLEVFNMKTMRVREVEVVPSNMWGGQGLLGASVRFCSFRR 106
Query: 155 ANENVWHIL 163
A+E+VWH+L
Sbjct: 107 ASEHVWHVL 115
>sp|Q10149|YAT2_SCHPO Uncharacterized protein C1D4.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1D4.02c PE=4 SV=2
Length = 345
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 32/174 (18%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
V+++S A +E+++DFI A++ I L+ D LL++ E+ + V+S K Q R
Sbjct: 34 VENDSKAYNARIESYYDFITAVNGILLNGDPSMFMALLRDS-SPEVTLEVFSLKGQITRK 92
Query: 61 VNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDT------------------- 101
VNI +G+ +++ S A + +WHIL+ +D+
Sbjct: 93 VNI----KINSDEKIGMVLQWASIAPAVDAIWHILNVIDDSPVARASLVPYEDYIVGTPE 148
Query: 102 --------LKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI 147
L +L+++ +++ L++ +Y+ R V I P+ WGG G +G +
Sbjct: 149 GMMTGEKALSDLIESHLNRPLRLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGV 202
>sp|Q9FUJ1|CKX7_ARATH Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1
Length = 524
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 28 DQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGA 87
D + KEL+KNG++ + + D RT + P G + +RF
Sbjct: 394 DFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEE--GEIFYIVALLRFVPPCAK 451
Query: 88 NENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVR 127
+V ++ Q+ + + +KNGID +L + Y S+ + +R
Sbjct: 452 VSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIR 491
>sp|Q9K0M3|NQRA_NEIMB Na(+)-translocating NADH-quinone reductase subunit A OS=Neisseria
meningitidis serogroup B (strain MC58) GN=nqrA PE=3 SV=1
Length = 447
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 13 EAFFDFIVAIDNIRLDQDNDTL----KELLKNGID-----KELKMAVYSSKTQDVRTVNI 63
E F F+ A+D L D + E K G+ E K+ V + DV + N
Sbjct: 145 EPFAIFVNAMDTNPLAADPTVIIKEAAEDFKRGLLVLSRLTERKIHVCKAAGADVPSENA 204
Query: 64 T--PSNSWGGQ---GLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNG-IDKELKMA 117
++ +GG GL G I F GAN+ VW I QD T+ L G ++ E +A
Sbjct: 205 ANIETHEFGGPHPAGLSGTHIHFIEPVGANKTVWTINYQDVITIGRLFATGRLNTERVIA 264
Query: 118 VYSS---KTQDVRTV 129
+ S K + +RTV
Sbjct: 265 LGGSQVNKPRLLRTV 279
>sp|Q5UR67|YR617_MIMIV Uncharacterized protein R617 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R617 PE=4 SV=1
Length = 170
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 16 FDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDV-----RTVNITPSNSWG 70
FD + + ++ Q+ D +K LL+ G +K + A S K + + VNI P N W
Sbjct: 95 FDIVTEGNRLKFSQNPDLMKRLLETG-NKTIVEASPSDKIWGIGLTAQQAVNI-PENKWP 152
Query: 71 GQGLLG 76
G+ LLG
Sbjct: 153 GKNLLG 158
>sp|Q46205|HYPA_CLOPE Protein HypA OS=Clostridium perfringens (strain 13 / Type A)
GN=hypA PE=4 SV=2
Length = 973
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 14/51 (27%)
Query: 3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDN-------DTLKELLKNGIDKEL 46
DNS Q A F V + N L+++ DTLK+L++NGIDKEL
Sbjct: 340 DNSTKQSA-------FTVLVKNAELNKEEEFKKVVMDTLKDLVENGIDKEL 383
>sp|Q65VU4|NQRA_MANSM Na(+)-translocating NADH-quinone reductase subunit A OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=nqrA PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 73 GLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNG 109
GL+G I F G N++VWHI QD + +L G
Sbjct: 216 GLVGTHIHFIDPVGINKSVWHINYQDVIAIGKLFTTG 252
>sp|B1JL79|DIAA_YERPY DnaA initiator-associating protein DiaA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=diaA
PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|Q665M1|DIAA_YERPS DnaA initiator-associating protein DiaA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=diaA
PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|B2K3Y4|DIAA_YERPB DnaA initiator-associating protein DiaA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=diaA
PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|A7FDY8|DIAA_YERP3 DnaA initiator-associating protein DiaA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=diaA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|A4THK2|DIAA_YERPP DnaA initiator-associating protein DiaA OS=Yersinia pestis (strain
Pestoides F) GN=diaA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|Q1CE20|DIAA_YERPN DnaA initiator-associating protein DiaA OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=diaA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|A9R1Q8|DIAA_YERPG DnaA initiator-associating protein DiaA OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=diaA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|Q8ZB74|DIAA_YERPE DnaA initiator-associating protein DiaA OS=Yersinia pestis GN=diaA
PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|Q1C1F8|DIAA_YERPA DnaA initiator-associating protein DiaA OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=diaA PE=3 SV=1
Length = 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 83
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 84 FEGANENVWHIL 95
GA H+L
Sbjct: 166 HRGARVQELHML 177
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 95 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLG---VSIRFCS 151
L Q D L + G +++ AV ++ T+D+ V +T + GLLG V IR S
Sbjct: 106 LGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPS 165
Query: 152 FEGANENVWHIL 163
GA H+L
Sbjct: 166 HRGARVQELHML 177
>sp|B0K924|AROB_THEP3 3-dehydroquinate synthase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=aroB PE=3 SV=1
Length = 356
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 81 FCSFEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTV 129
F FE N++ ILD + D L+ ++K + + K+ K +++R++
Sbjct: 195 FSLFEYIESNIYEILDLEEDKLRHIIKKSCEIKGKIVSLDEKEENLRSI 243
>sp|P43955|NQRA_HAEIN Na(+)-translocating NADH-quinone reductase subunit A OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=nqrA PE=1 SV=2
Length = 447
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 55 TQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDNDTLKELLKNG-IDKE 113
T D+ + I GL+G I F G + VWHI QD + +L G + E
Sbjct: 202 TADLENLQIHDFTGVHPAGLVGTHIHFIDPVGIQKTVWHINYQDVIAVGKLFTTGELYSE 261
Query: 114 LKMAVYSSKTQDVRTVNIT 132
+++ + ++ R V T
Sbjct: 262 RVISLAGPQVKEPRLVRTT 280
>sp|P51735|VPH_BPHP1 Probable tail fiber protein OS=Haemophilus phage HP1 PE=4 SV=1
Length = 925
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 18 FIVAIDNIRLDQDNDTLKELLKNGIDKELKMA--VYSSKTQDVRTVNITPSNSWGGQGLL 75
++ + ++ RLD +N+ + G + E K VY S T DV TP S GG L
Sbjct: 837 YLQSSESHRLDDNNNIEPVSFEVGAEIEGKSGGGVYLSATHDV-----TPHYSSGGSRLY 891
Query: 76 GVSI-RFCSFEGANENVWHILDQDNDTLKEL 105
GV + +F + G + I D N +K +
Sbjct: 892 GVGVKKFAVYVGRDGTTIEIEDLSNYFVKRI 922
>sp|Q816T0|SYL_BACCR Leucine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=leuS PE=3 SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
>sp|B7H798|SYL_BACC4 Leucine--tRNA ligase OS=Bacillus cereus (strain B4264) GN=leuS PE=3
SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
>sp|B7IL05|SYL_BACC2 Leucine--tRNA ligase OS=Bacillus cereus (strain G9842) GN=leuS PE=3
SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
>sp|B9J1E1|SYL_BACCQ Leucine--tRNA ligase OS=Bacillus cereus (strain Q1) GN=leuS PE=3
SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
>sp|B7HSS7|SYL_BACC7 Leucine--tRNA ligase OS=Bacillus cereus (strain AH187) GN=leuS PE=3
SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
>sp|Q72YY8|SYL_BACC1 Leucine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=leuS
PE=3 SV=1
Length = 802
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 27 LDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP---SNSWGGQGLLGVSIRFCS 83
L ++N+ + + N ++ + +A + + T + + + P S +W GL G RF
Sbjct: 570 LGENNEKMSKSKGNVVNPDDIVASHGADTLRLYEMFMGPLDASIAWSENGLDGAR-RFL- 627
Query: 84 FEGANENVWHILDQDNDTLKELLKNGIDKELKMAVYSS 121
+ VW + QDN L E + + +KEL+ A + +
Sbjct: 628 -----DRVWRLFVQDNGELSEKITDAPNKELEKAYHQT 660
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,363,928
Number of Sequences: 539616
Number of extensions: 2697243
Number of successful extensions: 7405
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 7334
Number of HSP's gapped (non-prelim): 82
length of query: 163
length of database: 191,569,459
effective HSP length: 108
effective length of query: 55
effective length of database: 133,290,931
effective search space: 7331001205
effective search space used: 7331001205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)