Query psy18011
Match_columns 163
No_of_seqs 230 out of 1748
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3834|consensus 99.9 5.9E-25 1.3E-29 175.1 12.5 157 1-159 22-205 (462)
2 PF04495 GRASP55_65: GRASP55/6 99.8 5.8E-18 1.3E-22 119.2 13.3 110 48-157 1-137 (138)
3 PRK10779 zinc metallopeptidase 99.7 3E-16 6.6E-21 130.2 15.5 143 1-149 133-307 (449)
4 TIGR00054 RIP metalloprotease 99.6 1.3E-13 2.8E-18 113.6 14.6 135 1-148 135-283 (420)
5 PF04495 GRASP55_65: GRASP55/6 99.6 2.8E-14 6E-19 100.5 9.0 81 1-82 50-130 (138)
6 PRK10139 serine endoprotease; 99.5 8.7E-13 1.9E-17 109.7 15.9 124 1-131 297-454 (455)
7 PF13180 PDZ_2: PDZ domain; PD 99.5 7.6E-14 1.6E-18 90.0 7.1 59 1-63 21-80 (82)
8 TIGR02037 degP_htrA_DO peripla 99.5 1.9E-12 4.1E-17 107.0 14.8 123 1-129 264-426 (428)
9 PRK10942 serine endoprotease; 99.4 5.2E-12 1.1E-16 105.5 15.3 126 1-131 318-472 (473)
10 cd00991 PDZ_archaeal_metallopr 99.3 7.1E-12 1.5E-16 80.2 7.9 59 1-63 17-76 (79)
11 cd00989 PDZ_metalloprotease PD 99.3 2.5E-11 5.5E-16 77.2 8.1 59 1-63 19-77 (79)
12 cd00988 PDZ_CTP_protease PDZ d 99.2 6.3E-11 1.4E-15 76.4 7.9 61 1-65 20-83 (85)
13 cd00986 PDZ_LON_protease PDZ d 99.2 1.6E-10 3.6E-15 73.7 7.6 59 1-64 15-74 (79)
14 cd00990 PDZ_glycyl_aminopeptid 99.1 1.5E-10 3.2E-15 73.9 6.6 58 1-64 19-76 (80)
15 cd00987 PDZ_serine_protease PD 99.1 2.6E-10 5.6E-15 74.1 7.5 52 1-54 31-83 (90)
16 TIGR00054 RIP metalloprotease 99.1 5.7E-10 1.2E-14 92.1 8.1 73 1-79 210-282 (420)
17 cd00136 PDZ PDZ domain, also c 99.0 5.7E-10 1.2E-14 69.3 5.9 48 1-50 20-69 (70)
18 TIGR02860 spore_IV_B stage IV 99.0 2.2E-09 4.7E-14 87.4 9.7 74 3-80 122-196 (402)
19 PRK10779 zinc metallopeptidase 99.0 1.1E-09 2.5E-14 91.1 8.3 76 1-80 228-306 (449)
20 TIGR03279 cyano_FeS_chp putati 99.0 1.5E-09 3.2E-14 88.9 8.4 69 1-80 5-74 (433)
21 TIGR01713 typeII_sec_gspC gene 99.0 2.2E-09 4.7E-14 83.3 8.3 59 1-63 198-257 (259)
22 COG5233 GRH1 Peripheral Golgi 99.0 6.6E-09 1.4E-13 81.2 9.8 157 1-158 70-284 (417)
23 TIGR02038 protease_degS peripl 98.9 5E-09 1.1E-13 84.7 8.4 60 1-64 285-345 (351)
24 PRK10898 serine endoprotease; 98.9 5.4E-09 1.2E-13 84.5 8.2 61 1-65 286-347 (353)
25 KOG3129|consensus 98.9 9.6E-09 2.1E-13 75.9 7.8 74 1-79 146-222 (231)
26 TIGR00225 prc C-terminal pepti 98.9 7.4E-09 1.6E-13 83.1 8.0 63 1-64 69-132 (334)
27 smart00228 PDZ Domain present 98.8 1.3E-08 2.9E-13 65.0 6.7 52 1-53 33-84 (85)
28 PRK10139 serine endoprotease; 98.8 1.5E-08 3.3E-13 84.4 8.0 57 1-62 397-453 (455)
29 PLN00049 carboxyl-terminal pro 98.8 2.9E-08 6.3E-13 81.3 8.5 60 1-63 109-169 (389)
30 PF00595 PDZ: PDZ domain (Also 98.8 1.7E-08 3.8E-13 64.5 5.6 49 1-51 32-81 (81)
31 TIGR02037 degP_htrA_DO peripla 98.7 4.1E-08 8.9E-13 81.3 7.7 52 1-54 369-421 (428)
32 PRK10942 serine endoprotease; 98.7 5.9E-08 1.3E-12 81.3 8.1 51 1-54 415-465 (473)
33 cd00992 PDZ_signaling PDZ doma 98.7 5E-08 1.1E-12 62.1 5.4 47 1-50 33-81 (82)
34 COG0793 Prc Periplasmic protea 98.6 2.3E-07 5E-12 76.3 8.0 63 1-64 119-182 (406)
35 PF14685 Tricorn_PDZ: Tricorn 98.5 7E-07 1.5E-11 58.1 7.7 57 3-62 29-87 (88)
36 COG0265 DegQ Trypsin-like seri 98.4 1.2E-06 2.7E-11 70.6 7.7 62 1-65 277-338 (347)
37 KOG3834|consensus 98.3 8.3E-07 1.8E-11 72.0 5.6 78 1-80 116-194 (462)
38 PRK09681 putative type II secr 98.2 5.4E-06 1.2E-10 64.6 7.3 55 5-63 218-273 (276)
39 PRK11186 carboxy-terminal prot 98.1 8.6E-06 1.9E-10 70.7 7.5 63 1-64 262-332 (667)
40 KOG1421|consensus 97.9 0.00047 1E-08 59.4 13.7 59 1-64 310-368 (955)
41 COG3480 SdrC Predicted secrete 97.9 0.00011 2.3E-09 58.0 8.7 75 2-80 138-214 (342)
42 COG3031 PulC Type II secretory 97.5 0.00034 7.3E-09 53.2 6.0 53 2-56 215-268 (275)
43 KOG3553|consensus 97.5 7.4E-05 1.6E-09 49.3 2.0 25 1-26 66-90 (124)
44 COG3975 Predicted protease wit 97.4 0.00019 4.1E-09 60.1 4.1 53 1-64 469-521 (558)
45 COG0750 Predicted membrane-ass 97.3 0.0012 2.6E-08 53.7 7.5 52 1-54 136-191 (375)
46 KOG3129|consensus 97.2 0.0015 3.3E-08 48.7 6.2 57 88-147 160-222 (231)
47 KOG3209|consensus 97.1 0.00075 1.6E-08 58.4 5.0 50 1-52 785-836 (984)
48 KOG1320|consensus 97.0 0.0025 5.3E-08 53.3 6.7 62 1-66 405-467 (473)
49 KOG3209|consensus 96.8 0.013 2.8E-07 51.1 9.9 50 2-52 682-734 (984)
50 KOG3605|consensus 96.7 0.012 2.7E-07 50.6 8.9 103 2-111 681-805 (829)
51 KOG3580|consensus 96.5 0.0028 6.1E-08 54.1 3.9 50 1-51 436-487 (1027)
52 KOG3532|consensus 96.4 0.0048 1E-07 53.5 4.6 42 1-44 405-446 (1051)
53 PF12812 PDZ_1: PDZ-like domai 96.3 0.0073 1.6E-07 38.4 4.0 39 3-43 39-77 (78)
54 PF13180 PDZ_2: PDZ domain; PD 96.2 0.025 5.5E-07 35.8 6.1 40 88-132 35-81 (82)
55 TIGR02860 spore_IV_B stage IV 95.8 0.049 1.1E-06 44.9 7.5 55 93-149 136-197 (402)
56 KOG1421|consensus 95.6 0.16 3.4E-06 44.6 10.1 112 12-134 786-931 (955)
57 cd00989 PDZ_metalloprotease PD 95.3 0.099 2.1E-06 32.4 6.2 41 88-133 33-79 (79)
58 KOG3550|consensus 94.8 0.077 1.7E-06 37.9 4.9 49 1-51 122-172 (207)
59 cd00986 PDZ_LON_protease PDZ d 94.7 0.21 4.5E-06 31.1 6.4 42 88-134 28-76 (79)
60 KOG3542|consensus 94.5 0.032 6.9E-07 48.7 2.8 49 1-52 569-618 (1283)
61 COG3480 SdrC Predicted secrete 94.2 0.37 8.1E-06 38.5 8.1 61 87-151 149-217 (342)
62 cd00988 PDZ_CTP_protease PDZ d 94.1 0.24 5.2E-06 31.1 5.9 43 88-134 34-84 (85)
63 cd00991 PDZ_archaeal_metallopr 94.1 0.33 7.1E-06 30.4 6.4 37 94-132 34-77 (79)
64 KOG0606|consensus 93.5 0.11 2.5E-06 47.5 4.6 29 1-30 665-693 (1205)
65 KOG3651|consensus 93.5 0.15 3.2E-06 40.5 4.7 48 2-51 38-87 (429)
66 KOG3580|consensus 93.0 0.3 6.5E-06 42.3 6.0 49 4-54 229-279 (1027)
67 cd00990 PDZ_glycyl_aminopeptid 92.9 0.71 1.5E-05 28.6 6.5 42 88-134 33-78 (80)
68 KOG3552|consensus 92.8 0.11 2.4E-06 46.7 3.4 49 1-52 82-131 (1298)
69 PF14685 Tricorn_PDZ: Tricorn 92.8 0.57 1.2E-05 30.4 5.9 38 93-131 45-88 (88)
70 TIGR03279 cyano_FeS_chp putati 92.7 0.47 1E-05 39.6 6.8 66 87-160 18-89 (433)
71 KOG1892|consensus 89.4 0.51 1.1E-05 43.1 4.0 52 1-53 967-1019(1629)
72 KOG3606|consensus 88.2 1.1 2.4E-05 35.1 4.8 52 2-54 202-254 (358)
73 cd00987 PDZ_serine_protease PD 88.0 2.2 4.8E-05 26.7 5.5 35 94-130 48-89 (90)
74 TIGR02038 protease_degS peripl 86.8 2.8 6E-05 34.1 6.7 40 93-134 301-347 (351)
75 TIGR01713 typeII_sec_gspC gene 85.2 3.7 8.1E-05 32.0 6.4 38 93-132 214-258 (259)
76 PRK10898 serine endoprotease; 84.5 4.2 9E-05 33.1 6.6 40 93-134 302-348 (353)
77 KOG3551|consensus 84.5 1.4 3.1E-05 36.2 3.8 47 3-51 119-167 (506)
78 KOG0609|consensus 83.9 1.8 3.9E-05 36.9 4.3 50 2-53 154-205 (542)
79 KOG3549|consensus 79.1 3.4 7.4E-05 33.6 4.1 49 3-52 89-138 (505)
80 COG0793 Prc Periplasmic protea 79.0 6.3 0.00014 32.8 5.9 40 93-132 135-182 (406)
81 KOG1738|consensus 78.9 2 4.3E-05 37.3 3.0 47 2-51 233-282 (638)
82 PF11874 DUF3394: Domain of un 78.9 1.8 3.8E-05 32.0 2.3 22 1-23 129-150 (183)
83 COG5233 GRH1 Peripheral Golgi 78.9 5.2 0.00011 32.2 5.0 77 2-78 195-272 (417)
84 TIGR00225 prc C-terminal pepti 78.8 6.7 0.00015 31.5 5.9 41 93-133 85-133 (334)
85 PLN00049 carboxyl-terminal pro 78.5 8.1 0.00017 31.9 6.4 39 93-133 125-171 (389)
86 cd00136 PDZ PDZ domain, also c 76.8 4.9 0.00011 23.9 3.6 28 88-118 34-69 (70)
87 PRK09681 putative type II secr 75.5 13 0.00027 29.4 6.3 38 93-132 230-274 (276)
88 KOG3605|consensus 74.7 3.1 6.6E-05 36.6 2.9 38 3-41 765-803 (829)
89 KOG2921|consensus 72.7 4.4 9.6E-05 33.6 3.3 36 3-40 229-265 (484)
90 PF00595 PDZ: PDZ domain (Also 67.8 12 0.00026 23.0 3.9 26 93-119 48-81 (81)
91 KOG3571|consensus 63.7 11 0.00024 32.3 3.9 50 3-53 286-339 (626)
92 COG3031 PulC Type II secretory 57.7 55 0.0012 25.5 6.4 36 94-131 231-273 (275)
93 PRK11186 carboxy-terminal prot 56.5 36 0.00079 30.3 6.1 41 93-133 279-333 (667)
94 COG0265 DegQ Trypsin-like seri 37.1 1.6E+02 0.0034 23.7 6.6 40 93-134 293-339 (347)
95 PRK00913 multifunctional amino 35.9 21 0.00046 30.5 1.5 24 3-28 308-331 (483)
96 PF10623 PilI: Plasmid conjuga 35.6 36 0.00078 21.5 2.1 9 100-108 29-37 (83)
97 COG0260 PepB Leucyl aminopepti 34.2 23 0.00051 30.2 1.4 24 3-28 307-330 (485)
98 PF00883 Peptidase_M17: Cytoso 33.1 16 0.00034 29.4 0.2 24 3-28 139-162 (311)
99 cd00433 Peptidase_M17 Cytosol 32.8 25 0.00054 29.9 1.4 24 3-28 294-317 (468)
100 KOG4407|consensus 32.1 24 0.00052 34.0 1.2 29 1-30 150-178 (1973)
101 PRK05015 aminopeptidase B; Pro 31.7 30 0.00064 29.1 1.6 24 3-28 245-268 (424)
102 PF11253 DUF3052: Protein of u 30.0 38 0.00082 23.5 1.7 16 7-23 1-16 (127)
103 KOG3549|consensus 28.0 82 0.0018 26.0 3.5 37 94-131 105-150 (505)
104 COG1625 Fe-S oxidoreductase, r 26.1 47 0.001 27.8 1.8 28 1-29 8-36 (414)
105 KOG3938|consensus 25.2 50 0.0011 26.1 1.8 49 2-51 157-208 (334)
106 KOG2597|consensus 23.7 48 0.001 28.5 1.5 24 3-28 329-352 (513)
107 PRK09570 rpoH DNA-directed RNA 23.6 51 0.0011 20.9 1.3 14 6-20 45-59 (79)
108 PTZ00412 leucyl aminopeptidase 22.7 49 0.0011 28.8 1.4 24 3-28 353-376 (569)
109 cd02791 MopB_CT_Nitrate-R-NapA 20.8 80 0.0017 20.8 2.0 18 6-24 43-60 (122)
110 PF04014 Antitoxin-MazE: Antid 20.3 37 0.0008 18.8 0.2 11 8-19 17-27 (47)
111 KOG3369|consensus 20.2 51 0.0011 24.3 0.9 24 6-30 46-69 (199)
112 PF14552 Tautomerase_2: Tautom 20.1 30 0.00066 21.9 -0.3 25 6-31 56-80 (82)
No 1
>KOG3834|consensus
Probab=99.92 E-value=5.9e-25 Score=175.14 Aligned_cols=157 Identities=54% Similarity=0.935 Sum_probs=139.9
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR 80 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~ 80 (163)
|+.||||++|||++|.|.|++|||..+...+|.+..++....++ ++++|+.......+.+.+.+.+.|.+. .||+.++
T Consensus 22 VqedSpa~~aglepffdFIvSI~g~rL~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wggq-llGvsvr 99 (462)
T KOG3834|consen 22 VQEDSPAHKAGLEPFFDFIVSINGIRLNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGGQ-LLGVSVR 99 (462)
T ss_pred eecCChHHhcCcchhhhhhheeCcccccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEeccccccccc-ccceEEE
Confidence 57899999999999999999999999998888888888877766 999999877667788888888777766 8999999
Q ss_pred eecccccccceEEEeeeCc---------------------------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011 81 FCSFEGANENVWHILDQDN---------------------------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP 133 (163)
Q Consensus 81 ~~~~~~~~~~~~~I~~v~~---------------------------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p 133 (163)
+...+.+.+..|+|++|+. +||..+|++|.++++.|.||+...+..|+++++|
T Consensus 100 Fcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~p 179 (462)
T KOG3834|consen 100 FCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITP 179 (462)
T ss_pred eccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccchHHHHHHHHhccCCCcceeEeecCCCccceEEeec
Confidence 9888777777787777765 8899999999999999999999999999999999
Q ss_pred CCCCCCcceeceeecccccccccccc
Q psy18011 134 SNSWGGQGLLGVSIRFCSFEGANENV 159 (163)
Q Consensus 134 ~~~~~~~g~iG~~~~~~~~~~~~~~~ 159 (163)
..-||+.|.|||.+++|+|||||...
T Consensus 180 n~awGgeg~lGCgIG~GyLhrIP~~~ 205 (462)
T KOG3834|consen 180 NSAWGGEGALGCGIGYGYLHRIPVSP 205 (462)
T ss_pred cccccccceecccccceeeeeccccc
Confidence 88899999999999999999999753
No 2
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=99.78 E-value=5.8e-18 Score=119.17 Aligned_cols=110 Identities=50% Similarity=0.878 Sum_probs=82.7
Q ss_pred EEEEECCCceEEEEEEccCCCCCCcceeeeEEeeecccccccceEEEeeeCc---------------------------h
Q psy18011 48 MAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANENVWHILDQDN---------------------------D 100 (163)
Q Consensus 48 l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~I~~v~~---------------------------~ 100 (163)
|+|+.......+++.+.|+..|++.+.||+++++.....+...+++|++|.+ +
T Consensus 1 l~v~~~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~ 80 (138)
T PF04495_consen 1 LNVYNAKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED 80 (138)
T ss_dssp EEEEETTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC
T ss_pred CceEECCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH
Confidence 4677766667889999887788888999999998766544455666665543 8
Q ss_pred HHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeecccccccccc
Q psy18011 101 TLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANE 157 (163)
Q Consensus 101 ~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~~~~~~~ 157 (163)
+|.++|+++.++++.|.|++.+.+..++++++|...|++.|.|||.+++|+||++|.
T Consensus 81 ~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig~G~Lh~iP~ 137 (138)
T PF04495_consen 81 DLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIGYGYLHRIPS 137 (138)
T ss_dssp HHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE-SGGGS--S
T ss_pred HHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEecceeeeccCC
Confidence 899999999999999999999899999999999999999999999999999999996
No 3
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.71 E-value=3e-16 Score=130.22 Aligned_cols=143 Identities=18% Similarity=0.213 Sum_probs=100.1
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCC-C-----CCCcce
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSN-S-----WGGQGL 74 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~-~-----~~~~~~ 74 (163)
|.++|||++||||+ ||+|++|||++|.+|+|....+....+++++.+++.|+++.++.++++.... . ......
T Consensus 133 V~~~SpA~kAGLk~-GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~ 211 (449)
T PRK10779 133 IAPNSIAAQAQIAP-GTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSS 211 (449)
T ss_pred cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhhc
Confidence 57899999999999 9999999999999997644444455666789999999886655555553110 0 001123
Q ss_pred eeeEEeeec-------------cc----ccccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011 75 LGVSIRFCS-------------FE----GANENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI 131 (163)
Q Consensus 75 lGl~~~~~~-------------~~----~~~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v 131 (163)
+|+.+..+. .. .++|. |+++|+ +++.+.++.++++++.+++.| +++.+++++
T Consensus 212 lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDv---Il~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R--~g~~~~~~v 286 (449)
T PRK10779 212 LGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDR---IVKVDGQPLTQWQTFVTLVRDNPGKPLALEIER--QGSPLSLTL 286 (449)
T ss_pred ccccccCCCcCcEEEeeCCCCHHHHcCCCCCCE---EEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEE--CCEEEEEEE
Confidence 555432210 00 03344 999998 788888888888999999998 667788888
Q ss_pred ecCCC--CC-Ccceeceeecc
Q psy18011 132 TPSNS--WG-GQGLLGVSIRF 149 (163)
Q Consensus 132 ~p~~~--~~-~~g~iG~~~~~ 149 (163)
+|... .+ ..+++|+.+..
T Consensus 287 ~~~~~~~~g~~~~~iGi~~~~ 307 (449)
T PRK10779 287 TPDSKPGNGKAEGFAGVVPKV 307 (449)
T ss_pred EeeeecCCCceeeEEEEeccc
Confidence 88632 12 25779998653
No 4
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.56 E-value=1.3e-13 Score=113.65 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=91.6
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR 80 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~ 80 (163)
|.++|||++|||++ ||+|++|||+++.+|+| ++..+.... +++.+++.|+++.....+++.... .....|....
T Consensus 135 V~~~SpA~~AGL~~-GDvI~~vng~~v~~~~d-l~~~ia~~~-~~v~~~I~r~g~~~~l~v~l~~~~---~~~~~g~vV~ 208 (420)
T TIGR00054 135 LDKNSIALEAGIEP-GDEILSVNGNKIPGFKD-VRQQIADIA-GEPMVEILAERENWTFEVMKELIP---RGPKIEPVLS 208 (420)
T ss_pred cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhhc-ccceEEEEEecCceEeccccccee---cCCCcCcEEE
Confidence 56899999999999 99999999999999976 555555444 678899999764433222221100 0111232222
Q ss_pred ee----ccc----ccccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceecee
Q psy18011 81 FC----SFE----GANENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVS 146 (163)
Q Consensus 81 ~~----~~~----~~~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~ 146 (163)
.. +.. .++|. |+++|+ +++.+.++.++++++.++++| +++.+.++++|..+ +..+ +|+.
T Consensus 209 ~V~~~SpA~~aGL~~GD~---Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R--~g~~~~~~v~~~~~-~~~~-iGi~ 281 (420)
T TIGR00054 209 DVTPNSPAEKAGLKEGDY---IQSINGEKLRSWTDFVSAVKENPGKSMDIKVER--NGETLSISLTPEAK-GKIG-IGIS 281 (420)
T ss_pred EECCCCHHHHcCCCCCCE---EEEECCEECCCHHHHHHHHHhCCCCceEEEEEE--CCEEEEEEEEEcCC-CceE-EEEe
Confidence 11 111 13455 999998 788888988888999999998 67888889998653 2223 8876
Q ss_pred ec
Q psy18011 147 IR 148 (163)
Q Consensus 147 ~~ 148 (163)
+.
T Consensus 282 ~~ 283 (420)
T TIGR00054 282 PS 283 (420)
T ss_pred cc
Confidence 54
No 5
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=99.56 E-value=2.8e-14 Score=100.50 Aligned_cols=81 Identities=53% Similarity=0.879 Sum_probs=64.1
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEEe
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIR 80 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~~ 80 (163)
|.|||||++|||++|.|+|+.+|+....+- +.+..+++.+.++++.|.|++......+++++.|...|++.+.||+.+.
T Consensus 50 V~p~SPA~~AGL~p~~DyIig~~~~~l~~~-~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig 128 (138)
T PF04495_consen 50 VAPNSPAAKAGLEPFFDYIIGIDGGLLDDE-DDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIG 128 (138)
T ss_dssp E-TTSHHHHTT--TTTEEEEEETTCE--ST-CHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE
T ss_pred ecCCCHHHHCCccccccEEEEccceecCCH-HHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEec
Confidence 579999999999999999999999888876 5688999999999999999997777888999999988999999999986
Q ss_pred ee
Q psy18011 81 FC 82 (163)
Q Consensus 81 ~~ 82 (163)
..
T Consensus 129 ~G 130 (138)
T PF04495_consen 129 YG 130 (138)
T ss_dssp -S
T ss_pred ce
Confidence 53
No 6
>PRK10139 serine endoprotease; Provisional
Probab=99.51 E-value=8.7e-13 Score=109.67 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCCC-CCCcc-----
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQG----- 73 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~~-~~~~~----- 73 (163)
|.++|||++|||++ ||+|++|||++|.+|.| +...+. ...++++.++++|++ +..++++.+... .....
T Consensus 297 V~~~SpA~~AGL~~-GDvIl~InG~~V~s~~d-l~~~l~~~~~g~~v~l~V~R~G--~~~~l~v~~~~~~~~~~~~~~~~ 372 (455)
T PRK10139 297 VLPNSGSAKAGVKA-GDIITSLNGKPLNSFAE-LRSRIATTEPGTKVKLGLLRNG--KPLEVEVTLDTSTSSSASAEMIT 372 (455)
T ss_pred ECCCChHHHCCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEECCCCCccccccccc
Confidence 46899999999999 99999999999999976 555554 466788999999988 445554443211 00001
Q ss_pred --eee--------------eEEeeecccc----cc-cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeE
Q psy18011 74 --LLG--------------VSIRFCSFEG----AN-ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDV 126 (163)
Q Consensus 74 --~lG--------------l~~~~~~~~~----~~-~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~ 126 (163)
..| +.+......+ ++ ..|-.|++||+ ++|.+++++++ +++.|+++| +++.
T Consensus 373 ~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~l~~~~-~~v~l~v~R--~g~~ 449 (455)
T PRK10139 373 PALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKP-AIIALQIVR--GNES 449 (455)
T ss_pred ccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhCC-CeEEEEEEE--CCEE
Confidence 112 2211100001 11 11224999998 88999998755 789999998 5555
Q ss_pred EEEEE
Q psy18011 127 RTVNI 131 (163)
Q Consensus 127 ~~v~v 131 (163)
+.+.+
T Consensus 450 ~~~~~ 454 (455)
T PRK10139 450 IYLLL 454 (455)
T ss_pred EEEEe
Confidence 55543
No 7
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.50 E-value=7.6e-14 Score=89.98 Aligned_cols=59 Identities=31% Similarity=0.447 Sum_probs=48.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEECCCceEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~~~~~~~~v~~ 63 (163)
|.++|||++|||++ ||+|++|||++|.++.+ +..++ ...+++++.++++|++ +..++++
T Consensus 21 V~~~spA~~aGl~~-GD~I~~ing~~v~~~~~-~~~~l~~~~~g~~v~l~v~R~g--~~~~~~v 80 (82)
T PF13180_consen 21 VIPGSPAAKAGLQP-GDIILAINGKPVNSSED-LVNILSKGKPGDTVTLTVLRDG--EELTVEV 80 (82)
T ss_dssp ESTTSHHHHTTS-T-TEEEEEETTEESSSHHH-HHHHHHCSSTTSEEEEEEEETT--EEEEEEE
T ss_pred eCCCCcHHHCCCCC-CcEEEEECCEEcCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEE
Confidence 46899999999999 99999999999999966 55555 5678899999999988 4454443
No 8
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.47 E-value=1.9e-12 Score=107.04 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=82.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEccCC--C---CCCcce
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITPSN--S---WGGQGL 74 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~~~--~---~~~~~~ 74 (163)
|.++|||++|||++ ||+|++|||+++.+|.+ +...+. ...+..+.++++|++ +..++.+.+.. . ......
T Consensus 264 V~~~spA~~aGL~~-GDvI~~Vng~~i~~~~~-~~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l~~~~~~~~~~~~~~ 339 (428)
T TIGR02037 264 VLPGSPAEKAGLKA-GDVILSVNGKPISSFAD-LRRAIGTLKPGKKVTLGILRKG--KEKTITVTLGASPEEQASSSNPF 339 (428)
T ss_pred ccCCCChHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEECcCCCccccccccc
Confidence 56899999999999 99999999999999976 555554 466789999999988 44444443211 0 011234
Q ss_pred eeeEEeeecc----------------------cc-c---c-cceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEe
Q psy18011 75 LGVSIRFCSF----------------------EG-A---N-ENVWHILDQDN------DTLKELLKNG-IDKELKMAVYS 120 (163)
Q Consensus 75 lGl~~~~~~~----------------------~~-~---~-~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r 120 (163)
+|+.+..... .+ + + ..+-.|+++|+ ++|.+++++. +++++.|+|+|
T Consensus 340 lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R 419 (428)
T TIGR02037 340 LGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILR 419 (428)
T ss_pred cceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 5655432100 00 0 0 01224888888 7889999874 68899999998
Q ss_pred CCCCeEEEE
Q psy18011 121 SKTQDVRTV 129 (163)
Q Consensus 121 ~~~~~~~~v 129 (163)
+++.+.+
T Consensus 420 --~g~~~~~ 426 (428)
T TIGR02037 420 --GGATIFV 426 (428)
T ss_pred --CCEEEEE
Confidence 5555544
No 9
>PRK10942 serine endoprotease; Provisional
Probab=99.44 E-value=5.2e-12 Score=105.53 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHH-HhCCCCeEEEEEEECCCceEEEEEEccCCCC---CCcceee
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELL-KNGIDKELKMAVYSSKTQDVRTVNITPSNSW---GGQGLLG 76 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l-~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~---~~~~~lG 76 (163)
|.++|||++|||++ ||+|++|||++|.+|++ +...+ ....++.+.+++.|++......+++...... .....+|
T Consensus 318 V~~~SpA~~AGL~~-GDvIl~InG~~V~s~~d-l~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lG 395 (473)
T PRK10942 318 VLPNSSAAKAGIKA-GDVITSLNGKPISSFAA-LRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNG 395 (473)
T ss_pred ECCCChHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccccccccc
Confidence 46899999999999 99999999999999976 55555 4566788999999988443333433221000 1111244
Q ss_pred eEEeee------------cc--cc-cc----cceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011 77 VSIRFC------------SF--EG-AN----ENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI 131 (163)
Q Consensus 77 l~~~~~------------~~--~~-~~----~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v 131 (163)
+..... .+ .+ +. ..+-.|++||+ ++|.+++++.+ +++.|+|.| ++..+.+.+
T Consensus 396 l~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~dl~~~l~~~~-~~v~l~V~R--~g~~~~v~~ 472 (473)
T PRK10942 396 IEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAELRKILDSKP-SVLALNIQR--GDSSIYLLM 472 (473)
T ss_pred ceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhCC-CeEEEEEEE--CCEEEEEEe
Confidence 432200 00 01 11 11225999998 78999998754 789999998 555555544
No 10
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.34 E-value=7.1e-12 Score=80.22 Aligned_cols=59 Identities=25% Similarity=0.214 Sum_probs=48.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~ 63 (163)
|.++|||++|||++ ||+|++|||+++.+|.+ +...+.. ..+..+.+++.|++ +..++++
T Consensus 17 V~~~spa~~aGL~~-GDiI~~Ing~~v~~~~d-~~~~l~~~~~g~~v~l~v~r~g--~~~~~~~ 76 (79)
T cd00991 17 VIVGSPAENAVLHT-GDVIYSINGTPITTLED-FMEALKPTKPGEVITVTVLPST--TKLTNVS 76 (79)
T ss_pred ECCCChHHhcCCCC-CCEEEEECCEEcCCHHH-HHHHHhcCCCCCEEEEEEEECC--EEEEEEE
Confidence 46899999999999 99999999999999965 6566654 35778999999987 4455544
No 11
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.28 E-value=2.5e-11 Score=77.17 Aligned_cols=59 Identities=31% Similarity=0.406 Sum_probs=48.1
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~ 63 (163)
|.++|||+++||++ ||+|++|||+++.+|.+ +..++....+..+.+++.|++ +..++.+
T Consensus 19 v~~~s~a~~~gl~~-GD~I~~ing~~i~~~~~-~~~~l~~~~~~~~~l~v~r~~--~~~~~~l 77 (79)
T cd00989 19 VVPGSPAAKAGLKA-GDRILAINGQKIKSWED-LVDAVQENPGKPLTLTVERNG--ETITLTL 77 (79)
T ss_pred ECCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHHCCCceEEEEEEECC--EEEEEEe
Confidence 46899999999999 99999999999999965 666666555678999999976 4455554
No 12
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.23 E-value=6.3e-11 Score=76.40 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=49.6
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEEEC-CCceEEEEEEcc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVYSS-KTQDVRTVNITP 65 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~r~-~~~~~~~v~~~~ 65 (163)
|.++|||+++||++ ||+|++|||+++.+| .+ +..++....+..+.+++.|+ + +..++++.|
T Consensus 20 v~~~s~a~~~gl~~-GD~I~~vng~~i~~~~~~~-~~~~l~~~~~~~i~l~v~r~~~--~~~~~~~~~ 83 (85)
T cd00988 20 VLPGSPAAKAGIKA-GDIIVAIDGEPVDGLSLED-VVKLLRGKAGTKVRLTLKRGDG--EPREVTLTR 83 (85)
T ss_pred ecCCCCHHHcCCCC-CCEEEEECCEEcCCCCHHH-HHHHhcCCCCCEEEEEEEcCCC--CEEEEEEEE
Confidence 46899999999999 999999999999999 65 45666555677899999997 5 556666554
No 13
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.17 E-value=1.6e-10 Score=73.70 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=47.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||++ ||++ ||+|++|||+++.+|.+ +..++. ...+..+.+++.|++ +..++++.
T Consensus 15 V~~~s~A~~-gL~~-GD~I~~Ing~~v~~~~~-~~~~l~~~~~~~~v~l~v~r~g--~~~~~~v~ 74 (79)
T cd00986 15 VVEGMPAAG-KLKA-GDHIIAVDGKPFKEAEE-LIDYIQSKKEGDTVKLKVKREE--KELPEDLI 74 (79)
T ss_pred ECCCCchhh-CCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCCEEEEEEEECC--EEEEEEEE
Confidence 468999997 8999 99999999999999965 656665 456778999999987 44555544
No 14
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.15 E-value=1.5e-10 Score=73.86 Aligned_cols=58 Identities=36% Similarity=0.519 Sum_probs=45.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||++|||++ ||+|++|||+++.+|.+.+.. ...+..+.+++.|++ +..++.+.
T Consensus 19 V~~~s~a~~aGl~~-GD~I~~Ing~~v~~~~~~l~~---~~~~~~v~l~v~r~g--~~~~~~v~ 76 (80)
T cd00990 19 VRDDSPADKAGLVA-GDELVAVNGWRVDALQDRLKE---YQAGDPVELTVFRDD--RLIEVPLT 76 (80)
T ss_pred ECCCChHHHhCCCC-CCEEEEECCEEhHHHHHHHHh---cCCCCEEEEEEEECC--EEEEEEEE
Confidence 46899999999999 999999999999997553221 135678999999987 44555544
No 15
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.14 E-value=2.6e-10 Score=74.12 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=44.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSK 54 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~ 54 (163)
|.++|||+++||++ ||+|++|||+++.+|.+ +..++.. ..+..+.+++.|++
T Consensus 31 v~~~s~a~~~gl~~-GD~I~~Ing~~i~~~~~-~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 31 VDPGSPAAKAGLKP-GDVILAVNGKPVKSVAD-LRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred ECCCCHHHHcCCCc-CCEEEEECCEECCCHHH-HHHHHHhcCCCCEEEEEEEECC
Confidence 46899999999999 99999999999999965 5555554 34688999999977
No 16
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.06 E-value=5.7e-10 Score=92.13 Aligned_cols=73 Identities=29% Similarity=0.444 Sum_probs=57.6
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI 79 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~ 79 (163)
|.++|||++|||++ ||+|++|||+++.+|+| +...+....++++.++++|++ +..++.+.+... ... .+|+.+
T Consensus 210 V~~~SpA~~aGL~~-GD~Iv~Vng~~V~s~~d-l~~~l~~~~~~~v~l~v~R~g--~~~~~~v~~~~~-~~~-~iGi~~ 282 (420)
T TIGR00054 210 VTPNSPAEKAGLKE-GDYIQSINGEKLRSWTD-FVSAVKENPGKSMDIKVERNG--ETLSISLTPEAK-GKI-GIGISP 282 (420)
T ss_pred ECCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCceEEEEEECC--EEEEEEEEEcCC-Cce-EEEEec
Confidence 46899999999999 99999999999999965 777777677788999999988 666777766521 111 277754
No 17
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.05 E-value=5.7e-10 Score=69.26 Aligned_cols=48 Identities=33% Similarity=0.586 Sum_probs=40.5
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAV 50 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v 50 (163)
|.++|||++|||++ ||+|++|||+++.+| .+ +..++....+.++.|++
T Consensus 20 v~~~s~a~~~gl~~-GD~I~~Ing~~v~~~~~~~-~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 20 VEPGSPAERAGLQA-GDVILAVNGTDVKNLTLED-VAELLKKEVGEKVTLTV 69 (70)
T ss_pred eCCCCHHHHcCCCC-CCEEEEECCEECCCCCHHH-HHHHHhhCCCCeEEEEE
Confidence 46899999999999 999999999999999 55 56677666677788776
No 18
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=99.02 E-value=2.2e-09 Score=87.37 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=56.9
Q ss_pred CCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCC-CCCcceeeeEEe
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQGLLGVSIR 80 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~-~~~~~~lGl~~~ 80 (163)
.+|||++|||++ ||+|++|||+++.+|+| +.+++....++++.+++.|++ +..++.+.|... ......||+.++
T Consensus 122 ~~SPAa~AGLq~-GDiIvsING~~V~s~~D-L~~iL~~~~g~~V~LtV~R~G--e~~tv~V~Pv~~~~d~~ykLGl~Vr 196 (402)
T TIGR02860 122 IHSPGEEAGIQI-GDRILKINGEKIKNMDD-LANLINKAGGEKLTLTIERGG--KIIETVIKPVKDKEEGRYRIGLYIR 196 (402)
T ss_pred CCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHHHhCCCCeEEEEEEECC--EEEEEEEEEeeeCCCCCEEEEEEEE
Confidence 369999999999 99999999999999965 668887777889999999987 556666654311 122356777544
No 19
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.02 E-value=1.1e-09 Score=91.09 Aligned_cols=76 Identities=32% Similarity=0.421 Sum_probs=58.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCC--C-Ccceeee
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSW--G-GQGLLGV 77 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~--~-~~~~lGl 77 (163)
|.++|||++|||++ ||+|++|||+++.+|+| +...+....++++.++++|++ +..++++.+.... + ....+|+
T Consensus 228 V~~~SpA~~AGL~~-GDvIl~Ing~~V~s~~d-l~~~l~~~~~~~v~l~v~R~g--~~~~~~v~~~~~~~~g~~~~~iGi 303 (449)
T PRK10779 228 VQPNSAASKAGLQA-GDRIVKVDGQPLTQWQT-FVTLVRDNPGKPLALEIERQG--SPLSLTLTPDSKPGNGKAEGFAGV 303 (449)
T ss_pred eCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCCCCEEEEEEEECC--EEEEEEEEeeeecCCCceeeEEEE
Confidence 46899999999999 99999999999999965 667777667788999999988 5566666553111 1 1245788
Q ss_pred EEe
Q psy18011 78 SIR 80 (163)
Q Consensus 78 ~~~ 80 (163)
.+.
T Consensus 304 ~~~ 306 (449)
T PRK10779 304 VPK 306 (449)
T ss_pred ecc
Confidence 753
No 20
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=99.01 E-value=1.5e-09 Score=88.92 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=52.4
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEE-ECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVY-SSKTQDVRTVNITPSNSWGGQGLLGVSI 79 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~-r~~~~~~~~v~~~~~~~~~~~~~lGl~~ 79 (163)
|.|||||++|||++ ||+|++|||+++.+|.| +..++. +..+.++|. |++ +..++.+.+.. ...||+..
T Consensus 5 V~pgSpAe~AGLe~-GD~IlsING~~V~Dw~D-~~~~l~---~e~l~L~V~~rdG--e~~~l~Ie~~~----dedlG~~f 73 (433)
T TIGR03279 5 VLPGSIAEELGFEP-GDALVSINGVAPRDLID-YQFLCA---DEELELEVLDANG--ESHQIEIEKDL----DEDLGLEF 73 (433)
T ss_pred cCCCCHHHHcCCCC-CCEEEEECCEECCCHHH-HHHHhc---CCcEEEEEEcCCC--eEEEEEEecCC----CCCCcEEe
Confidence 57999999999999 99999999999999976 444442 356889986 555 66777776642 24567765
Q ss_pred e
Q psy18011 80 R 80 (163)
Q Consensus 80 ~ 80 (163)
.
T Consensus 74 ~ 74 (433)
T TIGR03279 74 T 74 (433)
T ss_pred c
Confidence 4
No 21
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.99 E-value=2.2e-09 Score=83.32 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=48.4
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~ 63 (163)
+.++|||+++||++ ||+|++|||+++.+|.+ +..++.. ..+.++.++|+|+| +.+++.+
T Consensus 198 v~~~s~a~~aGLr~-GDvIv~ING~~i~~~~~-~~~~l~~~~~~~~v~l~V~R~G--~~~~i~v 257 (259)
T TIGR01713 198 GKDPSLFYKSGLQD-GDIAVALNGLDLRDPEQ-AFQALQMLREETNLTLTVERDG--QREDIYV 257 (259)
T ss_pred cCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCeEEEEEEECC--EEEEEEE
Confidence 35789999999999 99999999999999965 6666665 45578999999988 5455543
No 22
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=98.96 E-value=6.6e-09 Score=81.17 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=101.9
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCCh--------HHH-HHHHHhCCCCeEEEEEEECCCceEE--EEEEccCC-C
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN--------DTL-KELLKNGIDKELKMAVYSSKTQDVR--TVNITPSN-S 68 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~--------d~~-~~~l~~~~~~~v~l~v~r~~~~~~~--~v~~~~~~-~ 68 (163)
|.+-|||++||.-. ||+|+-+|+.++.--. +.. ...+...-+.++++.|+.-.+.+.. .+...+.. +
T Consensus 70 v~~~~~~e~~~~~~-~dyilg~n~Dp~~fl~~~r~~s~P~~~~~s~~~~~~~~sl~v~V~slkG~~~~~~~~~~I~~~~~ 148 (417)
T COG5233 70 VNPESPAEKAGMVV-GDYILGINEDPLRFLEMNRRRSVPLLVYNSDLEYVRAVSLQVGVDSLKGCQIGMGELYKIPFSQR 148 (417)
T ss_pred ccccChhHhhcccc-ceeEEeecCCcHHHHHhhccccccchhhcchhhhhhceeEEEEEEeecCcccccceeEecccccc
Confidence 45789999998877 9999999986653210 000 0111223334566666553211111 11111110 0
Q ss_pred -----CCC-----------cceeeeEEeeecccccccceEEEeeeCc------------------------------hHH
Q psy18011 69 -----WGG-----------QGLLGVSIRFCSFEGANENVWHILDQDN------------------------------DTL 102 (163)
Q Consensus 69 -----~~~-----------~~~lGl~~~~~~~~~~~~~~~~I~~v~~------------------------------~~l 102 (163)
... ...+|+.+.+.++....+..++|+.|+- .++
T Consensus 149 ~~~V~~Nsde~r~~~~~~~~k~~G~~iqws~l~~~v~~~~HilnV~I~d~p~a~a~l~PdEdyi~gs~dg~~~~~ge~~l 228 (417)
T COG5233 149 RCKVEFNSDEIRNDVRRLRRKLRGKDIQWSRLKDVVCSDSHILNVSIQDKPPAYALLSPDEDYIDGSSDGQPLEIGELDL 228 (417)
T ss_pred ccceeechhhhhchHHHHHHhhhcceeeeeechhhhhhhhheeeeecCCCchhhcccCCcccccccCCCcccccchhhHH
Confidence 000 1347888777665433333444555421 678
Q ss_pred HHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeeccccccccccc
Q psy18011 103 KELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCSFEGANEN 158 (163)
Q Consensus 103 ~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~~~~~~~~ 158 (163)
.++++.+.+-++.|++++.-.++.+.+++.|...|+..|.|||..+.|++|++|.-
T Consensus 229 ~Dv~es~~n~pl~Ly~yn~i~d~~R~~T~~~~~h~g~~g~lgc~vghgflhrlP~~ 284 (417)
T COG5233 229 EDVNESPVNLPLSLYYYNPIDDQERAKTERDGVHKGIVGILGCQVGHGFLHRLPLA 284 (417)
T ss_pred HHHhhcccCCceEEEEEecccccccceeeccCccccCccccccccccceeeccccc
Confidence 88999888999999999988899999999998778889999999999999999973
No 23
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.92 E-value=5e-09 Score=84.71 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=49.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||++|||++ ||+|++|||++|.+|.| +...+. ...++++.++++|++ +.+++.+.
T Consensus 285 V~~~spA~~aGL~~-GDvI~~Ing~~V~s~~d-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 345 (351)
T TIGR02038 285 VDPNGPAARAGILV-RDVILKYDGKDVIGAEE-LMDRIAETRPGSKVMVTVLRQG--KQLELPVT 345 (351)
T ss_pred cCCCChHHHCCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEE
Confidence 46899999999999 99999999999999966 555665 467788999999987 44555544
No 24
>PRK10898 serine endoprotease; Provisional
Probab=98.91 E-value=5.4e-09 Score=84.55 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=49.3
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYSSKTQDVRTVNITP 65 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r~~~~~~~~v~~~~ 65 (163)
|.++|||++|||++ ||+|++|||++|.+|.+ +...+. ...++.+.++++|++ +.+++.+.+
T Consensus 286 V~~~spA~~aGL~~-GDvI~~Ing~~V~s~~~-l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~l 347 (353)
T PRK10898 286 VSPDGPAAKAGIQV-NDLIISVNNKPAISALE-TMDQVAEIRPGSVIPVVVMRDD--KQLTLQVTI 347 (353)
T ss_pred ECCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC--EEEEEEEEe
Confidence 46899999999999 99999999999999966 555554 467788999999987 445555543
No 25
>KOG3129|consensus
Probab=98.88 E-value=9.6e-09 Score=75.90 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=61.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHH---HHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeee
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLK---ELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGV 77 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~---~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl 77 (163)
|.|+|||+.|||+. ||.|++++...--++.. +. ..+....++.+.++|.|.+ +...+.+.|. .|++.+.||+
T Consensus 146 V~~~SPA~~aGl~~-gD~il~fGnV~sgn~~~-lq~i~~~v~~~e~~~v~v~v~R~g--~~v~L~ltP~-~W~GrGLLGC 220 (231)
T KOG3129|consen 146 VVPGSPADEAGLCV-GDEILKFGNVHSGNFLP-LQNIAAVVQSNEDQIVSVTVIREG--QKVVLSLTPK-KWQGRGLLGC 220 (231)
T ss_pred cCCCChhhhhCccc-CceEEEecccccccchh-HHHHHHHHHhccCcceeEEEecCC--CEEEEEeCcc-cccCCcceee
Confidence 57999999999999 99999999887777754 33 3345677889999999987 6688888898 6999999999
Q ss_pred EE
Q psy18011 78 SI 79 (163)
Q Consensus 78 ~~ 79 (163)
..
T Consensus 221 ~~ 222 (231)
T KOG3129|consen 221 NY 222 (231)
T ss_pred ee
Confidence 74
No 26
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.88 E-value=7.4e-09 Score=83.15 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||++|||++ ||+|++|||+++.+|+ +.+..++....+.++.+++.|++.....++++.
T Consensus 69 V~~~spA~~aGL~~-GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~ 132 (334)
T TIGR00225 69 PFEGSPAEKAGIKP-GDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLK 132 (334)
T ss_pred eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEE
Confidence 46899999999999 9999999999999984 234455555567899999999865444554443
No 27
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.84 E-value=1.3e-08 Score=65.01 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSS 53 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~ 53 (163)
|.++|||+++||++ ||+|++|||+++.++.+..........+..+.+++.|+
T Consensus 33 v~~~s~a~~~gl~~-GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 33 VVPGSPAAKAGLKV-GDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred ECCCCHHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 46889999999999 99999999999999865333333233345888888874
No 28
>PRK10139 serine endoprotease; Provisional
Probab=98.82 E-value=1.5e-08 Score=84.44 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=47.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN 62 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~ 62 (163)
|.++|||++|||++ ||+|++|||++|.+|.+ +..++.... +++.++++|++ +...+.
T Consensus 397 V~~~spA~~aGL~~-GD~I~~Ing~~v~~~~~-~~~~l~~~~-~~v~l~v~R~g--~~~~~~ 453 (455)
T PRK10139 397 VVKGSPAAQAGLQK-DDVIIGVNRDRVNSIAE-MRKVLAAKP-AIIALQIVRGN--ESIYLL 453 (455)
T ss_pred eCCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCC-CeEEEEEEECC--EEEEEE
Confidence 46899999999999 99999999999999965 777776654 68999999987 444443
No 29
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.78 E-value=2.9e-08 Score=81.30 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~ 63 (163)
|.++|||++|||++ ||+|++|||++|.+|. +....++....+.++.+++.|++ +..++++
T Consensus 109 V~~~SPA~~aGl~~-GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g--~~~~~~l 169 (389)
T PLN00049 109 PAPGGPAARAGIRP-GDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP--ETRLVTL 169 (389)
T ss_pred eCCCChHHHcCCCC-CCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC--EEEEEEE
Confidence 46899999999999 9999999999999763 23445566566789999999976 4444444
No 30
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.78 E-value=1.7e-08 Score=64.52 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=38.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY 51 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~ 51 (163)
|.++|||+++||++ ||+|++|||+++.+|.. ....++....+ ++.|+|+
T Consensus 32 v~~~~~a~~~gl~~-GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 32 VVPGSPAERAGLKV-GDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp ECTTSHHHHHTSST-TEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred EeCCChHHhcccch-hhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 46899999999999 99999999999999853 23344555443 7777763
No 31
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.72 E-value=4.1e-08 Score=81.33 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=45.4
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSK 54 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~ 54 (163)
|.++|||++|||++ ||+|++|||++|.+|.+ +.+++.. ..++.+.++++|++
T Consensus 369 V~~~SpA~~aGL~~-GDvI~~Ing~~V~s~~d-~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 369 VVSGSPAARAGLQP-GDVILSVNQQPVSSVAE-LRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred eCCCCHHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhcCCCCEEEEEEEECC
Confidence 46899999999999 99999999999999965 6677765 45788999999987
No 32
>PRK10942 serine endoprotease; Provisional
Probab=98.70 E-value=5.9e-08 Score=81.32 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSK 54 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~ 54 (163)
|.++|||++|||++ ||+|++|||++|.+|.+ +...+...+ +.+.++|+|++
T Consensus 415 V~~~S~A~~aGL~~-GDvIv~VNg~~V~s~~d-l~~~l~~~~-~~v~l~V~R~g 465 (473)
T PRK10942 415 VKPGTPAAQIGLKK-GDVIIGANQQPVKNIAE-LRKILDSKP-SVLALNIQRGD 465 (473)
T ss_pred eCCCChHHHcCCCC-CCEEEEECCEEcCCHHH-HHHHHHhCC-CeEEEEEEECC
Confidence 46899999999999 99999999999999955 777777644 78999999987
No 33
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.68 E-value=5e-08 Score=62.14 Aligned_cols=47 Identities=30% Similarity=0.548 Sum_probs=35.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecC--CChHHHHHHHHhCCCCeEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLD--QDNDTLKELLKNGIDKELKMAV 50 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~--~~~d~~~~~l~~~~~~~v~l~v 50 (163)
|.++|||+++||++ ||+|++|||+++. ++.+ +..++....+ .+.+++
T Consensus 33 v~~~s~a~~~gl~~-GD~I~~ing~~i~~~~~~~-~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 33 VEPGGPAERGGLRV-GDRILEVNGVSVEGLTHEE-AVELLKNSGD-EVTLTV 81 (82)
T ss_pred ECCCChHHhCCCCC-CCEEEEECCEEcCccCHHH-HHHHHHhCCC-eEEEEE
Confidence 46899999999999 9999999999999 6643 5555554333 555554
No 34
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=2.3e-07 Score=76.34 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=49.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
+.++|||++|||++ ||+|++|||+++.+-. +.....+....|.++.|++.|.+..+.+++++.
T Consensus 119 ~~~~~PA~kagi~~-GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~ 182 (406)
T COG0793 119 PIDGSPAAKAGIKP-GDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLT 182 (406)
T ss_pred cCCCChHHHcCCCC-CCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEE
Confidence 35899999999999 9999999999998863 224456667788899999999754455666554
No 35
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.53 E-value=7e-07 Score=58.10 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=40.6
Q ss_pred CCChhhhcCCc--cCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEE
Q psy18011 3 DNSPGQKAGLE--AFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN 62 (163)
Q Consensus 3 ~~SpA~~AGL~--~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~ 62 (163)
..||-++.|+. + ||+|++|||+++..-.+ ...++....++++.|+|.+.++ ..+++.
T Consensus 29 ~~sPL~~pGv~v~~-GD~I~aInG~~v~~~~~-~~~lL~~~agk~V~Ltv~~~~~-~~R~v~ 87 (88)
T PF14685_consen 29 ARSPLAQPGVDVRE-GDYILAINGQPVTADAN-PYRLLEGKAGKQVLLTVNRKPG-GARTVV 87 (88)
T ss_dssp -B-GGGGGS----T-T-EEEEETTEE-BTTB--HHHHHHTTTTSEEEEEEE-STT--EEEEE
T ss_pred ccCCccCCCCCCCC-CCEEEEECCEECCCCCC-HHHHhcccCCCEEEEEEecCCC-CceEEE
Confidence 35899999966 9 99999999999998754 8889988899999999998653 445443
No 36
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-06 Score=70.58 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=49.9
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEcc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP 65 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~ 65 (163)
|.++|||+++|+++ ||.|+++||+++.+..+....+.....+.++.+++.|++ +.+++.+..
T Consensus 277 v~~~spa~~agi~~-Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g--~~~~~~v~l 338 (347)
T COG0265 277 VLPGSPAAKAGIKA-GDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG--KERELAVTL 338 (347)
T ss_pred cCCCChHHHcCCCC-CCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC--EEEEEEEEe
Confidence 56899999999999 999999999999999764444445567889999999987 445555443
No 37
>KOG3834|consensus
Probab=98.35 E-value=8.3e-07 Score=72.02 Aligned_cols=78 Identities=41% Similarity=0.744 Sum_probs=65.2
Q ss_pred CCCCChhhhcCCccCCeEEEEE-CCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAI-DNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI 79 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~I-ng~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~~ 79 (163)
|.++|||+.|||.+.+|+|+-+ |.+. ... +++..++..+.++.+.+.|++......+++++.|...|++.+.||+-.
T Consensus 116 V~p~SPaalAgl~~~~DYivG~~~~~~-~~~-eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~lGCgI 193 (462)
T KOG3834|consen 116 VEPNSPAALAGLRPYTDYIVGIWDAVM-HEE-EDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGALGCGI 193 (462)
T ss_pred cCCCCHHHhcccccccceEecchhhhc-cch-HHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccceecccc
Confidence 5789999999999889999999 6544 444 568899999999999999998666677889999887898888888754
Q ss_pred e
Q psy18011 80 R 80 (163)
Q Consensus 80 ~ 80 (163)
.
T Consensus 194 G 194 (462)
T KOG3834|consen 194 G 194 (462)
T ss_pred c
Confidence 3
No 38
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=98.21 E-value=5.4e-06 Score=64.61 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=44.1
Q ss_pred ChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCC-CCeEEEEEEECCCceEEEEEE
Q psy18011 5 SPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGI-DKELKMAVYSSKTQDVRTVNI 63 (163)
Q Consensus 5 SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~-~~~v~l~v~r~~~~~~~~v~~ 63 (163)
+...++|||+ ||.+++|||.++.+..+ ..++++... ..++.|+|+|+| +.+++.+
T Consensus 218 ~lF~~~GLq~-GDva~sING~dL~D~~q-a~~l~~~L~~~tei~ltVeRdG--q~~~i~i 273 (276)
T PRK09681 218 SLFDASGFKE-GDIAIALNQQDFTDPRA-MIALMRQLPSMDSIQLTVLRKG--ARHDISI 273 (276)
T ss_pred HHHHHcCCCC-CCEEEEeCCeeCCCHHH-HHHHHHHhccCCeEEEEEEECC--EEEEEEE
Confidence 4578999999 99999999999999854 556666544 478999999998 6566654
No 39
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.12 E-value=8.6e-06 Score=70.74 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=45.8
Q ss_pred CCCCChhhhc-CCccCCeEEEEEC--CEe---cCCCh-HHHHHHHHhCCCCeEEEEEEECC-CceEEEEEEc
Q psy18011 1 VQDNSPGQKA-GLEAFFDFIVAID--NIR---LDQDN-DTLKELLKNGIDKELKMAVYSSK-TQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~A-GL~~~GD~I~~In--g~~---v~~~~-d~~~~~l~~~~~~~v~l~v~r~~-~~~~~~v~~~ 64 (163)
|.|||||++| ||++ ||+|++|| |++ +..|. +....++....|.+|.|+|.|.+ ....+++++.
T Consensus 262 vipGsPA~ka~gLk~-GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~ 332 (667)
T PRK11186 262 LVAGGPAAKSKKLSV-GDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLT 332 (667)
T ss_pred ccCCChHHHhCCCCC-CCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEE
Confidence 4689999998 9999 99999998 544 33443 23567777778889999999843 2344555554
No 40
>KOG1421|consensus
Probab=97.91 E-value=0.00047 Score=59.44 Aligned_cols=59 Identities=24% Similarity=0.467 Sum_probs=49.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||+++ |++ ||..++||+.-+.++ ..+.+++....++.+.|+|+|.+ +..++++.
T Consensus 310 vL~~gpa~k~-Le~-GDillavN~t~l~df-~~l~~iLDegvgk~l~LtI~Rgg--qelel~vt 368 (955)
T KOG1421|consen 310 VLPEGPAEKK-LEP-GDILLAVNSTCLNDF-EALEQILDEGVGKNLELTIQRGG--QELELTVT 368 (955)
T ss_pred eccCCchhhc-cCC-CcEEEEEcceehHHH-HHHHHHHhhccCceEEEEEEeCC--EEEEEEEE
Confidence 4689999998 999 999999999988888 45778888778899999999988 55666554
No 41
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.88 E-value=0.00011 Score=58.03 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=55.6
Q ss_pred CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEE-CCCceEEEEEEccCCCCCCcceeeeEE
Q psy18011 2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYS-SKTQDVRTVNITPSNSWGGQGLLGVSI 79 (163)
Q Consensus 2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r-~~~~~~~~v~~~~~~~~~~~~~lGl~~ 79 (163)
..+|||..- |++ ||.|++|||+++.+..| +..++. ...+++++++++| ++..+..++++... ...+..-+|+++
T Consensus 138 ~~~~~~~gk-l~~-gD~i~avdg~~f~s~~e-~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~~giGIsl 213 (342)
T COG3480 138 IDNSPFKGK-LEA-GDTIIAVDGEPFTSSDE-LIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGKAGIGISL 213 (342)
T ss_pred cCCcchhce-ecc-CCeEEeeCCeecCCHHH-HHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCcceeeeEe
Confidence 457888765 999 99999999999999865 666665 5788999999997 66555666666654 222345677765
Q ss_pred e
Q psy18011 80 R 80 (163)
Q Consensus 80 ~ 80 (163)
-
T Consensus 214 ~ 214 (342)
T COG3480 214 V 214 (342)
T ss_pred e
Confidence 4
No 42
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.00034 Score=53.22 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=44.1
Q ss_pred CCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCC-CeEEEEEEECCCc
Q psy18011 2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGID-KELKMAVYSSKTQ 56 (163)
Q Consensus 2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~-~~v~l~v~r~~~~ 56 (163)
.++|...+.|||. ||.-+++|+..+++.+ +..++++...+ .+++++|.|+|..
T Consensus 215 kd~slF~~sglq~-GDIavaiNnldltdp~-~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 215 KDGSLFYKSGLQR-GDIAVAINNLDLTDPE-DMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred CCcchhhhhcCCC-cceEEEecCcccCCHH-HHHHHHHhhhcCcceEEEEEecCcc
Confidence 3568889999999 9999999999999995 46677765444 6899999999844
No 43
>KOG3553|consensus
Probab=97.46 E-value=7.4e-05 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.8
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEe
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIR 26 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~ 26 (163)
|.+||||+.|||+. +|.|+.+||-.
T Consensus 66 V~eGsPA~~AGLri-hDKIlQvNG~D 90 (124)
T KOG3553|consen 66 VSEGSPAEIAGLRI-HDKILQVNGWD 90 (124)
T ss_pred eccCChhhhhccee-cceEEEecCce
Confidence 57899999999999 99999999943
No 44
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.40 E-value=0.00019 Score=60.13 Aligned_cols=53 Identities=30% Similarity=0.462 Sum_probs=39.2
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 64 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~ 64 (163)
|.++|||++|||.+ ||+|++|||. + + ++.....+..+++++.|.+ +-+++.+.
T Consensus 469 V~~~gPA~~AGl~~-Gd~ivai~G~---s--~---~l~~~~~~d~i~v~~~~~~--~L~e~~v~ 521 (558)
T COG3975 469 VFPGGPAYKAGLSP-GDKIVAINGI---S--D---QLDRYKVNDKIQVHVFREG--RLREFLVK 521 (558)
T ss_pred cCCCChhHhccCCC-ccEEEEEcCc---c--c---cccccccccceEEEEccCC--ceEEeecc
Confidence 57899999999999 9999999998 1 1 1222345677889988866 54555444
No 45
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.0012 Score=53.66 Aligned_cols=52 Identities=29% Similarity=0.335 Sum_probs=41.3
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCCe---EEEEEEE-CC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKE---LKMAVYS-SK 54 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~---v~l~v~r-~~ 54 (163)
+.++|+|+.||+++ ||.|+++|++++.+|.+ ....+....+.. +.+.+.| ++
T Consensus 136 v~~~s~a~~a~l~~-Gd~iv~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 191 (375)
T COG0750 136 VAPKSAAALAGLRP-GDRIVAVDGEKVASWDD-VRRLLVAAAGDVFNLLTILVIRLDG 191 (375)
T ss_pred cCCCCHHHHcCCCC-CCEEEeECCEEccCHHH-HHHHHHhccCCcccceEEEEEeccc
Confidence 35789999999999 99999999999999965 555555444433 7888888 44
No 46
>KOG3129|consensus
Probab=97.16 E-value=0.0015 Score=48.75 Aligned_cols=57 Identities=18% Similarity=0.460 Sum_probs=43.9
Q ss_pred ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceee
Q psy18011 88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSI 147 (163)
Q Consensus 88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~ 147 (163)
+|..+++-.|+. +.+...++.+.++++.++|.| .++...+.++|.. |.|.|.|||.+
T Consensus 160 gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R--~g~~v~L~ltP~~-W~GrGLLGC~~ 222 (231)
T KOG3129|consen 160 GDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIR--EGQKVVLSLTPKK-WQGRGLLGCNY 222 (231)
T ss_pred CceEEEecccccccchhHHHHHHHHHhccCcceeEEEec--CCCEEEEEeCccc-ccCCcceeeee
Confidence 455444444554 344556667789999999998 7788999999987 99999999984
No 47
>KOG3209|consensus
Probab=97.13 E-value=0.00075 Score=58.39 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=38.3
Q ss_pred CCCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011 1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS 52 (163)
Q Consensus 1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r 52 (163)
|.+||||+++| |+. ||+|++|||+.|.+-+ .++..|+.. .+-+|.|+|..
T Consensus 785 IieGSPAdRCgkLkV-GDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip 836 (984)
T KOG3209|consen 785 IIEGSPADRCGKLKV-GDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP 836 (984)
T ss_pred cccCChhHhhccccc-cceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence 56899999998 888 9999999999988753 234455554 34678888864
No 48
>KOG1320|consensus
Probab=96.99 E-value=0.0025 Score=53.33 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=47.7
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHh-CCCCeEEEEEEECCCceEEEEEEccC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS 66 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~-~~~~~v~l~v~r~~~~~~~~v~~~~~ 66 (163)
|.|++|+..+|+.+ ||+|++|||++|.+-.+ +..++.. ..+..+.+..+|.. +..++.+.+.
T Consensus 405 Vlp~~~~~~~~~~~-g~~V~~vng~~V~n~~~-l~~~i~~~~~~~~v~vl~~~~~--e~~tl~Il~~ 467 (473)
T KOG1320|consen 405 VLPGSINGGYGLKP-GDQVVKVNGKPVKNLKH-LYELIEECSTEDKVAVLDRRSA--EDATLEILPE 467 (473)
T ss_pred eccCCCcccccccC-CCEEEEECCEEeechHH-HHHHHHhcCcCceEEEEEecCc--cceeEEeccc
Confidence 56899999999999 99999999999999965 7778765 33356666666654 5566666544
No 49
>KOG3209|consensus
Probab=96.85 E-value=0.013 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=37.5
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHH-hCCCCeEEEEEEE
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLK-NGIDKELKMAVYS 52 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~-~~~~~~v~l~v~r 52 (163)
.+...|++-| |++ ||+++.|||.+|.--+- ....|+. +..++.|.|+|+|
T Consensus 682 v~lGaAe~DGRL~~-gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRR 734 (984)
T KOG3209|consen 682 VPLGAAEEDGRLRE-GDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRR 734 (984)
T ss_pred eecccccccCcccC-CCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEee
Confidence 4567788877 999 99999999999985432 2334443 4556889999988
No 50
>KOG3605|consensus
Probab=96.71 E-value=0.012 Score=50.63 Aligned_cols=103 Identities=24% Similarity=0.323 Sum_probs=65.3
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCC-hHHHHHHHHhCCC-CeEEEEEEECCCceEEEEEEc-cCCCCCCcceeee
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQD-NDTLKELLKNGID-KELKMAVYSSKTQDVRTVNIT-PSNSWGGQGLLGV 77 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~-~d~~~~~l~~~~~-~~v~l~v~r~~~~~~~~v~~~-~~~~~~~~~~lGl 77 (163)
..+.||++.| |-. ||+|++|||...--- -..-..++....+ ..|+|+|.+.- -..++.+. |+ ....|||
T Consensus 681 m~~GpAarsgkLnI-GDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cp--PV~~V~I~RPd----~kyQLGF 753 (829)
T KOG3605|consen 681 MHGGPAARSGKLNI-GDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCP--PVTTVLIRRPD----LRYQLGF 753 (829)
T ss_pred ccCChhhhcCCccc-cceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCC--CceEEEeeccc----chhhccc
Confidence 4678999998 556 999999999765432 0122355666555 46889998754 33455553 33 2468999
Q ss_pred EEeeeccc-----ccccc-----eEEEeeeCc--------hHHHHHHHccCC
Q psy18011 78 SIRFCSFE-----GANEN-----VWHILDQDN--------DTLKELLKNGID 111 (163)
Q Consensus 78 ~~~~~~~~-----~~~~~-----~~~I~~v~~--------~~l~~~v~~~~~ 111 (163)
+++..-+- +..++ |-+|+.||+ +-+++++.+.-|
T Consensus 754 SVQNGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 754 SVQNGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred eeeCcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 98763321 11222 336999998 666677665444
No 51
>KOG3580|consensus
Probab=96.53 E-value=0.0028 Score=54.15 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=37.9
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCC--hHHHHHHHHhCCCCeEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD--NDTLKELLKNGIDKELKMAVY 51 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~--~d~~~~~l~~~~~~~v~l~v~ 51 (163)
|.+||||++-||+. ||+|++||.++..+- .+....++....++.+++.-.
T Consensus 436 vqegspA~~eGlqE-GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 436 VQEGSPAEQEGLQE-GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQ 487 (1027)
T ss_pred cccCCchhhccccc-cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhh
Confidence 57899999999999 999999999876653 234455666666677766543
No 52
>KOG3532|consensus
Probab=96.41 E-value=0.0048 Score=53.47 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=35.6
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCCC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDK 44 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~ 44 (163)
|.+||||.+|.|++ ||+.++|||.||++-++ ..++++...+.
T Consensus 405 v~~ns~a~k~~~~~-gdvlvai~~~pi~s~~q-~~~~~~s~~~~ 446 (1051)
T KOG3532|consen 405 VEDNSLADKAAFKP-GDVLVAINNVPIRSERQ-ATRFLQSTTGD 446 (1051)
T ss_pred ecCCChhhHhcCCC-cceEEEecCccchhHHH-HHHHHHhcccc
Confidence 67999999999999 99999999999999754 66777765543
No 53
>PF12812 PDZ_1: PDZ-like domain
Probab=96.31 E-value=0.0073 Score=38.36 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHHhCCC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGID 43 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~ 43 (163)
.+|++.+-|+.. |-.|++|||+++.+- |.+.+.+...++
T Consensus 39 ~g~~~~~~~i~~-g~iI~~Vn~kpt~~L-d~f~~vvk~ipd 77 (78)
T PF12812_consen 39 GGSLAFAGGISK-GFIITSVNGKPTPDL-DDFIKVVKKIPD 77 (78)
T ss_pred CCChhhhCCCCC-CeEEEeECCcCCcCH-HHHHHHHHhCCC
Confidence 578888777999 999999999999998 557777776554
No 54
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=96.19 E-value=0.025 Score=35.77 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=31.9
Q ss_pred ccceEEEeeeCc------hHHHHHHH-ccCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011 88 NENVWHILDQDN------DTLKELLK-NGIDKELKMAVYSSKTQDVRTVNIT 132 (163)
Q Consensus 88 ~~~~~~I~~v~~------~~l~~~v~-~~~~~~v~l~v~r~~~~~~~~v~v~ 132 (163)
+|. |+++|+ .+|.+++. ..+|+++.|+++| +++.++++++
T Consensus 35 GD~---I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~ 81 (82)
T PF13180_consen 35 GDI---ILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR--DGEELTVEVT 81 (82)
T ss_dssp TEE---EEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE--TTEEEEEEEE
T ss_pred CcE---EEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEE
Confidence 455 999998 78888885 4689999999999 6677777664
No 55
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.79 E-value=0.049 Score=44.94 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=43.6
Q ss_pred EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCC-CCCcceeceeecc
Q psy18011 93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNS-WGGQGLLGVSIRF 149 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~-~~~~g~iG~~~~~ 149 (163)
.|++||+ ++|.++++...++++.|++.| +++.++++++|... ..+.++||+.++.
T Consensus 136 iIvsING~~V~s~~DL~~iL~~~~g~~V~LtV~R--~Ge~~tv~V~Pv~~~~d~~ykLGl~VrD 197 (402)
T TIGR02860 136 RILKINGEKIKNMDDLANLINKAGGEKLTLTIER--GGKIIETVIKPVKDKEEGRYRIGLYIRD 197 (402)
T ss_pred EEEEECCEECCCHHHHHHHHHhCCCCeEEEEEEE--CCEEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence 5999998 789999988889999999998 66788888888632 2346789986643
No 56
>KOG1421|consensus
Probab=95.65 E-value=0.16 Score=44.55 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=65.1
Q ss_pred CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEc--cCCCCCC-cceeeeEEeeec-----
Q psy18011 12 LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT--PSNSWGG-QGLLGVSIRFCS----- 83 (163)
Q Consensus 12 L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~--~~~~~~~-~~~lGl~~~~~~----- 83 (163)
|.. ||+|+++||+.|+.-+| +..+. ++.+.+.|+|.. .+++++ |....+. .-..|-.++.+.
T Consensus 786 l~~-gdiilsvngk~itr~~d-l~d~~------eid~~ilrdg~~--~~ikipt~p~~et~r~vi~~gailq~ph~av~~ 855 (955)
T KOG1421|consen 786 LGV-GDIILSVNGKMITRLSD-LHDFE------EIDAVILRDGIE--MEIKIPTYPEYETSRAVIWMGAILQPPHSAVFE 855 (955)
T ss_pred ccc-ccEEEEecCeEEeeehh-hhhhh------hhheeeeecCcE--EEEEeccccccccceEEEEEeccccCchHHHHH
Confidence 788 99999999999998765 44332 578889999844 555543 4321000 001122111100
Q ss_pred ---------------ccccccceE----EEeeeCc------hHHHHHHHccC-CCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 84 ---------------FEGANENVW----HILDQDN------DTLKELLKNGI-DKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 84 ---------------~~~~~~~~~----~I~~v~~------~~l~~~v~~~~-~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
..++..+.+ .|++||+ ++|.+++..-| +.-+++.... .++....+++.|.
T Consensus 856 q~edlp~gvyvt~rg~gspalq~l~aa~fitavng~~t~~lddf~~~~~~ipdnsyv~v~~mt-fd~vp~~~s~k~n 931 (955)
T KOG1421|consen 856 QVEDLPEGVYVTSRGYGSPALQMLRAAHFITAVNGHDTNTLDDFYHMLLEIPDNSYVQVKQMT-FDGVPSIVSVKPN 931 (955)
T ss_pred HHhccCCceEEeecccCChhHhhcchheeEEEecccccCcHHHHHHHHhhCCCCceEEEEEec-cCCCceEEEeccC
Confidence 001111111 4899998 88999988765 4456655543 4566666777764
No 57
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=95.29 E-value=0.099 Score=32.38 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=31.6
Q ss_pred ccceEEEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011 88 NENVWHILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP 133 (163)
Q Consensus 88 ~~~~~~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p 133 (163)
+|. |+++|+ +++...+....+..+.+.+.| +++...+.++|
T Consensus 33 GD~---I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r--~~~~~~~~l~~ 79 (79)
T cd00989 33 GDR---ILAINGQKIKSWEDLVDAVQENPGKPLTLTVER--NGETITLTLTP 79 (79)
T ss_pred CCE---EEEECCEECCCHHHHHHHHHHCCCceEEEEEEE--CCEEEEEEecC
Confidence 555 999998 678888877667889999988 55667777665
No 58
>KOG3550|consensus
Probab=94.76 E-value=0.077 Score=37.86 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCCCChhhhc-CCccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011 1 VQDNSPGQKA-GLEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY 51 (163)
Q Consensus 1 V~~~SpA~~A-GL~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~ 51 (163)
+.||+.|++- ||+. ||+.++|||..|..-.. ---.++.+.. .++.+.|.
T Consensus 122 iipggvadrhgglkr-gdqllsvngvsvege~hekavellkaa~-gsvklvvr 172 (207)
T KOG3550|consen 122 IIPGGVADRHGGLKR-GDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKLVVR 172 (207)
T ss_pred ecCCccccccCcccc-cceeEeecceeecchhhHHHHHHHHHhc-CcEEEEEe
Confidence 4578888877 6999 99999999999876432 1224444433 45666654
No 59
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.67 E-value=0.21 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=32.5
Q ss_pred ccceEEEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 88 NENVWHILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 88 ~~~~~~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
+|. |+++|+ ++|.+.+.. .++..+.+.+.| +++...+++++.
T Consensus 28 GD~---I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r--~g~~~~~~v~l~ 76 (79)
T cd00986 28 GDH---IIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKR--EEKELPEDLILK 76 (79)
T ss_pred CCE---EEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEE--CCEEEEEEEEEe
Confidence 555 888888 678888875 578899999998 667777777764
No 60
>KOG3542|consensus
Probab=94.46 E-value=0.032 Score=48.66 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=35.0
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCChHHHHHHHH-hCCCCeEEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLK-NGIDKELKMAVYS 52 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~-~~~~~~v~l~v~r 52 (163)
|.|||-|+.+||+. ||+|++|||+.-.+-+ ...... ...+..+.++|..
T Consensus 569 V~pgskAa~~GlKR-gDqilEVNgQnfenis--~~KA~eiLrnnthLtltvKt 618 (1283)
T KOG3542|consen 569 VFPGSKAAREGLKR-GDQILEVNGQNFENIS--AKKAEEILRNNTHLTLTVKT 618 (1283)
T ss_pred ecCCchHHHhhhhh-hhhhhhccccchhhhh--HHHHHHHhcCCceEEEEEec
Confidence 56899999999999 9999999998876652 222222 2233567777765
No 61
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.23 E-value=0.37 Score=38.46 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=42.9
Q ss_pred cccceEEEeeeCc------hHHHHHHHcc-CCCeEEEEEEeC-CCCeEEEEEEecCCCCCCcceeceeecccc
Q psy18011 87 ANENVWHILDQDN------DTLKELLKNG-IDKELKMAVYSS-KTQDVRTVNITPSNSWGGQGLLGVSIRFCS 151 (163)
Q Consensus 87 ~~~~~~~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~-~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~ 151 (163)
++|. |++||+ ++|.+++++. +|..+++.+.|. +.....++++.+. +..+++.||+++-..+
T Consensus 149 ~gD~---i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~~giGIsl~d~~ 217 (342)
T COG3480 149 AGDT---IIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGKAGIGISLVDAP 217 (342)
T ss_pred cCCe---EEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCcceeeeEeecCc
Confidence 3556 999998 8899999874 799999999973 2333444455544 3445677999885554
No 62
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.15 E-value=0.24 Score=31.12 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=32.7
Q ss_pred ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
+|. |++||+ .++.++++..+++++.++++|. ++...+++++|.
T Consensus 34 GD~---I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~-~~~~~~~~~~~~ 84 (85)
T cd00988 34 GDI---IVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG-DGEPREVTLTRL 84 (85)
T ss_pred CCE---EEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC-CCCEEEEEEEEC
Confidence 455 888887 4677777766788999999984 277788888874
No 63
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=94.10 E-value=0.33 Score=30.40 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=29.3
Q ss_pred EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEe
Q psy18011 94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNIT 132 (163)
Q Consensus 94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~ 132 (163)
|+++|+ ++|.+.+... +++++.+.++| +++..+++++
T Consensus 34 I~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r--~g~~~~~~~~ 77 (79)
T cd00991 34 IYSINGTPITTLEDFMEALKPTKPGEVITVTVLP--STTKLTNVST 77 (79)
T ss_pred EEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEE--CCEEEEEEEE
Confidence 999998 6788888765 58899999998 6666666665
No 64
>KOG0606|consensus
Probab=93.54 E-value=0.11 Score=47.48 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=26.6
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD 30 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~ 30 (163)
|.++|||..|||++ ||.|+.+||+++...
T Consensus 665 v~egsPA~~agls~-~DlIthvnge~v~gl 693 (1205)
T KOG0606|consen 665 VEEGSPAFEAGLSA-GDLITHVNGEPVHGL 693 (1205)
T ss_pred ecCCCCccccCCCc-cceeEeccCcccchh
Confidence 57899999999999 999999999998864
No 65
>KOG3651|consensus
Probab=93.52 E-value=0.15 Score=40.46 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=34.7
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCCCCeEEEEEE
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGIDKELKMAVY 51 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~~~~v~l~v~ 51 (163)
-.++||++-| ++. ||.|++|||..|..-.. ....+++... .++.+++.
T Consensus 38 FD~tPAa~dG~i~~-GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~IhyN 87 (429)
T KOG3651|consen 38 FDKTPAAKDGRIRC-GDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIHYN 87 (429)
T ss_pred ccCCchhccCcccc-CCeeEEecceeecCccHHHHHHHHHHhc-cceEEEeh
Confidence 4689999998 888 99999999999976432 2445565433 45667664
No 66
>KOG3580|consensus
Probab=92.95 E-value=0.3 Score=42.28 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=34.4
Q ss_pred CChhhhc-CCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011 4 NSPGQKA-GLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK 54 (163)
Q Consensus 4 ~SpA~~A-GL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~ 54 (163)
.+.|++- +|+. ||.|++|||....+.+ .+-..++.... .++.+.|.|+.
T Consensus 229 ~gLAardgnlqE-GDiiLkINGtvteNmSLtDar~LIEkS~-GKL~lvVlRD~ 279 (1027)
T KOG3580|consen 229 TGLAARDGNLQE-GDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDS 279 (1027)
T ss_pred cchhhccCCccc-ccEEEEECcEeeccccchhHHHHHHhcc-CceEEEEEecC
Confidence 3455554 6999 9999999998776642 12346666544 46889999975
No 67
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=92.90 E-value=0.71 Score=28.55 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=31.3
Q ss_pred ccceEEEeeeCc---hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 88 NENVWHILDQDN---DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 88 ~~~~~~I~~v~~---~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
+|. |++||+ .+|.++++. .++..+.+++.| ++..+.+.+++.
T Consensus 33 GD~---I~~Ing~~v~~~~~~l~~~~~~~~v~l~v~r--~g~~~~~~v~~~ 78 (80)
T cd00990 33 GDE---LVAVNGWRVDALQDRLKEYQAGDPVELTVFR--DDRLIEVPLTLA 78 (80)
T ss_pred CCE---EEEECCEEhHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence 556 999998 446667766 367899999998 567777777763
No 68
>KOG3552|consensus
Probab=92.83 E-value=0.11 Score=46.75 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS 52 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r 52 (163)
|.+|+|+.- -|++ ||+|++|||++|.+.- |-...++.+ .+..+.|+|-+
T Consensus 82 VT~GGps~G-KL~P-GDQIl~vN~Epv~daprervIdlvRa-ce~sv~ltV~q 131 (1298)
T KOG3552|consen 82 VTEGGPSIG-KLQP-GDQILAVNGEPVKDAPRERVIDLVRA-CESSVNLTVCQ 131 (1298)
T ss_pred ecCCCCccc-cccC-CCeEEEecCcccccccHHHHHHHHHH-HhhhcceEEec
Confidence 567888774 3999 9999999999998732 434455554 34567888876
No 69
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=92.78 E-value=0.57 Score=30.41 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=28.5
Q ss_pred EEeeeCc------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEE
Q psy18011 93 HILDQDN------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNI 131 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v 131 (163)
.|++||+ .++..++....|+.+.|+|.+... ..+++.|
T Consensus 45 ~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~~~~-~~R~v~V 88 (88)
T PF14685_consen 45 YILAINGQPVTADANPYRLLEGKAGKQVLLTVNRKPG-GARTVVV 88 (88)
T ss_dssp EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT--EEEEEE
T ss_pred EEEEECCEECCCCCCHHHHhcccCCCEEEEEEecCCC-CceEEEC
Confidence 3999998 688999999899999999998543 5666553
No 70
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=92.74 E-value=0.47 Score=39.62 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=44.7
Q ss_pred cccceEEEeeeCc---hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEecCCCCCCcceeceeecccc---cccccccce
Q psy18011 87 ANENVWHILDQDN---DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVSIRFCS---FEGANENVW 160 (163)
Q Consensus 87 ~~~~~~~I~~v~~---~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p~~~~~~~g~iG~~~~~~~---~~~~~~~~~ 160 (163)
++|+ |++||| .++.++-....+..+.+.|.+ ++++..++++.|..+ --+|+.+.... +++|.-+|+
T Consensus 18 ~GD~---IlsING~~V~Dw~D~~~~l~~e~l~L~V~~-rdGe~~~l~Ie~~~d----edlG~~f~~~~~d~~~~C~N~C~ 89 (433)
T TIGR03279 18 PGDA---LVSINGVAPRDLIDYQFLCADEELELEVLD-ANGESHQIEIEKDLD----EDLGLEFTTALFDGLIQCNNRCP 89 (433)
T ss_pred CCCE---EEEECCEECCCHHHHHHHhcCCcEEEEEEc-CCCeEEEEEEecCCC----CCCcEEeccccCCcccccCCcCc
Confidence 3666 999999 333333222235678998873 367888888888542 24788887655 888888885
No 71
>KOG1892|consensus
Probab=89.38 E-value=0.51 Score=43.07 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCCCeEEEEEEEC
Q psy18011 1 VQDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSS 53 (163)
Q Consensus 1 V~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~~~v~l~v~r~ 53 (163)
|.+|++|+.-| |++ ||+.++|||+..---.+.....+....+..|.|+|...
T Consensus 967 VV~GgaAd~DGRL~a-GDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen 967 VVEGGAADHDGRLEA-GDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred eccCCcccccccccc-CceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence 56899999888 999 99999999998765544455445445567788888653
No 72
>KOG3606|consensus
Probab=88.17 E-value=1.1 Score=35.10 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=36.6
Q ss_pred CCCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEECC
Q psy18011 2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSSK 54 (163)
Q Consensus 2 ~~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~~ 54 (163)
.||..|+..||.+..|+|++|||.+|.--. |....++-++ ...+.++|+..+
T Consensus 202 VpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVkPAN 254 (358)
T KOG3606|consen 202 VPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVKPAN 254 (358)
T ss_pred cCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEecccc
Confidence 478999999998889999999999987531 2233333222 245778887644
No 73
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=87.99 E-value=2.2 Score=26.73 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=25.7
Q ss_pred EeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEE
Q psy18011 94 ILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVN 130 (163)
Q Consensus 94 I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~ 130 (163)
|+++|+ .++.+.+... .++++.+.++| +++.+.++
T Consensus 48 I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r--~g~~~~~~ 89 (90)
T cd00987 48 ILAVNGKPVKSVADLRRALAELKPGDKVTLTVLR--GGKELTVT 89 (90)
T ss_pred EEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEee
Confidence 888888 5777777764 48899999998 55555443
No 74
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=86.80 E-value=2.8 Score=34.06 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=31.7
Q ss_pred EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
.|+++|+ ++|.+.++. .++.++.|+++| +++.+++++++.
T Consensus 301 vI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~ 347 (351)
T TIGR02038 301 VILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR--QGKQLELPVTID 347 (351)
T ss_pred EEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence 5888888 678888876 578899999998 567777777764
No 75
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=85.19 E-value=3.7 Score=31.98 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=29.0
Q ss_pred EEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEe
Q psy18011 93 HILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNIT 132 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~ 132 (163)
.|++||+ +++.+++... +++.+.|+|+| +++.+++.+.
T Consensus 214 vIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R--~G~~~~i~v~ 258 (259)
T TIGR01713 214 IAVALNGLDLRDPEQAFQALQMLREETNLTLTVER--DGQREDIYVR 258 (259)
T ss_pred EEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEE--CCEEEEEEEE
Confidence 4899998 6777777764 67899999998 6676776654
No 76
>PRK10898 serine endoprotease; Provisional
Probab=84.50 E-value=4.2 Score=33.12 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=31.3
Q ss_pred EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
.|+++|+ .+|.+.+.. .+|+.+.|++.| +++.+++++++.
T Consensus 302 vI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R--~g~~~~~~v~l~ 348 (353)
T PRK10898 302 LIISVNNKPAISALETMDQVAEIRPGSVIPVVVMR--DDKQLTLQVTIQ 348 (353)
T ss_pred EEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEec
Confidence 4888887 577777766 578999999998 567777777764
No 77
>KOG3551|consensus
Probab=84.49 E-value=1.4 Score=36.24 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCChhhhcC-CccCCeEEEEECCEecCCChHH-HHHHHHhCCCCeEEEEEE
Q psy18011 3 DNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDT-LKELLKNGIDKELKMAVY 51 (163)
Q Consensus 3 ~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~-~~~~l~~~~~~~v~l~v~ 51 (163)
+|=.|+|+| |-- ||-|++|||....+..-+ --+.+. ..++++.++|+
T Consensus 119 kGlAADQt~aL~~-gDaIlSVNG~dL~~AtHdeAVqaLK-raGkeV~levK 167 (506)
T KOG3551|consen 119 KGLAADQTGALFL-GDAILSVNGEDLRDATHDEAVQALK-RAGKEVLLEVK 167 (506)
T ss_pred cccccccccceee-ccEEEEecchhhhhcchHHHHHHHH-hhCceeeeeee
Confidence 566788887 666 999999999988765321 112222 34566666664
No 78
>KOG0609|consensus
Probab=83.94 E-value=1.8 Score=36.93 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=36.4
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEEC
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYSS 53 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r~ 53 (163)
..|..|++.| |.. ||+|.+|||..+.+-. +.+..++.... +++++.+...
T Consensus 154 ~~GG~~~r~glL~~-GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP~ 205 (542)
T KOG0609|consen 154 MHGGMADRQGLLHV-GDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIPS 205 (542)
T ss_pred ccCCcchhccceee-ccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEccc
Confidence 4567777777 677 9999999999998752 34556665544 7788888653
No 79
>KOG3549|consensus
Probab=79.06 E-value=3.4 Score=33.65 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=34.1
Q ss_pred CCChhhhcCCccCCeEEEEECCEecCCCh-HHHHHHHHhCCCCeEEEEEEE
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDN-DTLKELLKNGIDKELKMAVYS 52 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~~~~-d~~~~~l~~~~~~~v~l~v~r 52 (163)
++-.|+..|+.-.||-|++|||..|+.-. |+.-.++.+ .|..+.++|..
T Consensus 89 kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~~ 138 (505)
T KOG3549|consen 89 KDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVKH 138 (505)
T ss_pred hhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeHh
Confidence 34567788866559999999999987642 334455554 55778888853
No 80
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=79.04 E-value=6.3 Score=32.81 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=31.0
Q ss_pred EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011 93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNIT 132 (163)
Q Consensus 93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~ 132 (163)
.|++||+ ++.++.++..+|.+++|++.|.+.+..+.++++
T Consensus 135 ~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~ 182 (406)
T COG0793 135 VIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLT 182 (406)
T ss_pred EEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEE
Confidence 3999998 446677777889999999999755666776664
No 81
>KOG1738|consensus
Probab=78.95 E-value=2 Score=37.33 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=34.7
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCChHHHHHHHHhCCC--CeEEEEEE
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDNDTLKELLKNGID--KELKMAVY 51 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d~~~~~l~~~~~--~~v~l~v~ 51 (163)
.++|||...+ |.+ ||+|+.||++.+-.| + +..++..... .-+.+++.
T Consensus 233 ~e~Spad~~~kI~d-gdEv~qiN~qtvVgw-q-lk~vV~sL~~~~sgi~l~lk 282 (638)
T KOG1738|consen 233 FEQSPADYRQKILD-GDEVLQINEQTVVGW-Q-LKVVVSSLRETPAGIELTLK 282 (638)
T ss_pred ccCChHHHhhcccC-ccceeeecccccccc-h-hHhHHhhcccCcccceeeee
Confidence 4789999886 899 999999999999999 4 6667654332 22444444
No 82
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=78.92 E-value=1.8 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.1
Q ss_pred CCCCChhhhcCCccCCeEEEEEC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAID 23 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~In 23 (163)
|..||||+++|+.. +++|+++-
T Consensus 129 v~fgS~A~~~g~d~-d~~I~~v~ 150 (183)
T PF11874_consen 129 VEFGSPAEKAGIDF-DWEITEVE 150 (183)
T ss_pred cCCCCHHHHcCCCC-CcEEEEEE
Confidence 45799999999999 99999873
No 83
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=78.86 E-value=5.2 Score=32.23 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCChhhhcCCccCCeEEEEE-CCEecCCChHHHHHHHHhCCCCeEEEEEEECCCceEEEEEEccCCCCCCcceeeeE
Q psy18011 2 QDNSPGQKAGLEAFFDFIVAI-DNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQGLLGVS 78 (163)
Q Consensus 2 ~~~SpA~~AGL~~~GD~I~~I-ng~~v~~~~d~~~~~l~~~~~~~v~l~v~r~~~~~~~~v~~~~~~~~~~~~~lGl~ 78 (163)
.+++|++.|+|-|.-|+|.-- ||++..--.-++..++....+-++.|.++..-...++.+++.+...|+..+.||+.
T Consensus 195 I~d~p~a~a~l~PdEdyi~gs~dg~~~~~ge~~l~Dv~es~~n~pl~Ly~yn~i~d~~R~~T~~~~~h~g~~g~lgc~ 272 (417)
T COG5233 195 IQDKPPAYALLSPDEDYIDGSSDGQPLEIGELDLEDVNESPVNLPLSLYYYNPIDDQERAKTERDGVHKGIVGILGCQ 272 (417)
T ss_pred cCCCchhhcccCCcccccccCCCcccccchhhHHHHHhhcccCCceEEEEEecccccccceeeccCccccCccccccc
Confidence 468999999999966776644 67776554345666777777788889888743335566666555445555566654
No 84
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=78.76 E-value=6.7 Score=31.50 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=28.9
Q ss_pred EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011 93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP 133 (163)
Q Consensus 93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p 133 (163)
.|++||+ .++.+.++..++.++.|++.|++....++++++.
T Consensus 85 ~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~ 133 (334)
T TIGR00225 85 KIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLKR 133 (334)
T ss_pred EEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 4999998 2555666666789999999996555555555543
No 85
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=78.50 E-value=8.1 Score=31.87 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.2
Q ss_pred EEeeeCc--------hHHHHHHHccCCCeEEEEEEeCCCCeEEEEEEec
Q psy18011 93 HILDQDN--------DTLKELLKNGIDKELKMAVYSSKTQDVRTVNITP 133 (163)
Q Consensus 93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~~~~~~~v~v~p 133 (163)
.|++||+ .++...++..++.++.|++.| ++..++++++.
T Consensus 125 ~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r--~g~~~~~~l~r 171 (389)
T PLN00049 125 VILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR--GPETRLVTLTR 171 (389)
T ss_pred EEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE--CCEEEEEEEEe
Confidence 4999998 355667776678999999998 55666666654
No 86
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=76.81 E-value=4.9 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=22.2
Q ss_pred ccceEEEeeeCc--------hHHHHHHHccCCCeEEEEE
Q psy18011 88 NENVWHILDQDN--------DTLKELLKNGIDKELKMAV 118 (163)
Q Consensus 88 ~~~~~~I~~v~~--------~~l~~~v~~~~~~~v~l~v 118 (163)
+|. |++||+ +++.++++.++++++.|++
T Consensus 34 GD~---I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 34 GDV---ILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCE---EEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 556 888887 6788888887888888876
No 87
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=75.51 E-value=13 Score=29.43 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=27.6
Q ss_pred EEeeeCc------hHHHHHHHc-cCCCeEEEEEEeCCCCeEEEEEEe
Q psy18011 93 HILDQDN------DTLKELLKN-GIDKELKMAVYSSKTQDVRTVNIT 132 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~-~~~~~v~l~v~r~~~~~~~~v~v~ 132 (163)
.+++||| ++..++++. .....+.|+|+| +|+..++.+.
T Consensus 230 va~sING~dL~D~~qa~~l~~~L~~~tei~ltVeR--dGq~~~i~i~ 274 (276)
T PRK09681 230 IAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLR--KGARHDISIA 274 (276)
T ss_pred EEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEE--CCEEEEEEEE
Confidence 3899998 444455554 356889999999 7777777664
No 88
>KOG3605|consensus
Probab=74.71 E-value=3.1 Score=36.58 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCChhhhcCCccCCeEEEEECCEec-CCChHHHHHHHHhC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRL-DQDNDTLKELLKNG 41 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v-~~~~d~~~~~l~~~ 41 (163)
-|..|++-|++. |.+|++|||+.| ....|-+-.+|...
T Consensus 765 RGGIAERGGVRV-GHRIIEINgQSVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 765 RGGIAERGGVRV-GHRIIEINGQSVVATPHEKIVQLLSNA 803 (829)
T ss_pred cccchhccCcee-eeeEEEECCceEEeccHHHHHHHHHHh
Confidence 478999999999 999999999875 44555555666543
No 89
>KOG2921|consensus
Probab=72.75 E-value=4.4 Score=33.56 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCChhhh-cCCccCCeEEEEECCEecCCChHHHHHHHHh
Q psy18011 3 DNSPGQK-AGLEAFFDFIVAIDNIRLDQDNDTLKELLKN 40 (163)
Q Consensus 3 ~~SpA~~-AGL~~~GD~I~~Ing~~v~~~~d~~~~~l~~ 40 (163)
..||+-- -||.+ ||+|+++||-+|.+-+| -.+.++.
T Consensus 229 ~~Spl~gprGL~v-gdvitsldgcpV~~v~d-W~ecl~t 265 (484)
T KOG2921|consen 229 SVSPLFGPRGLSV-GDVITSLDGCPVHKVSD-WLECLAT 265 (484)
T ss_pred ccCCCcCcccCCc-cceEEecCCcccCCHHH-HHHHHHh
Confidence 3455432 29999 99999999999988644 5555544
No 90
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=67.81 E-value=12 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEeeeCc--------hHHHHHHHccCCCeEEEEEE
Q psy18011 93 HILDQDN--------DTLKELLKNGIDKELKMAVY 119 (163)
Q Consensus 93 ~I~~v~~--------~~l~~~v~~~~~~~v~l~v~ 119 (163)
+|++||+ .+..++++..++ +++|+|+
T Consensus 48 ~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 48 RILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp EEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred hhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 4999998 667778887544 8888874
No 91
>KOG3571|consensus
Probab=63.74 E-value=11 Score=32.29 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=29.8
Q ss_pred CCChhhhcC-CccCCeEEEEECCEecCCCh-HHHHHHHHh--CCCCeEEEEEEEC
Q psy18011 3 DNSPGQKAG-LEAFFDFIVAIDNIRLDQDN-DTLKELLKN--GIDKELKMAVYSS 53 (163)
Q Consensus 3 ~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~-d~~~~~l~~--~~~~~v~l~v~r~ 53 (163)
++.+-|.-| +++ ||.|+.||.....+.. +.--++|.. ....+++++|-..
T Consensus 286 kgGAVA~DGRIe~-GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 286 KGGAVALDGRIEP-GDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred cCceeeccCccCc-cceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeec
Confidence 444334344 999 9999999998766543 112233322 2235688888653
No 92
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=57.68 E-value=55 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=23.9
Q ss_pred EeeeCc------hHHHHHHHccC-CCeEEEEEEeCCCCeEEEEEE
Q psy18011 94 ILDQDN------DTLKELLKNGI-DKELKMAVYSSKTQDVRTVNI 131 (163)
Q Consensus 94 I~~v~~------~~l~~~v~~~~-~~~v~l~v~r~~~~~~~~v~v 131 (163)
.+++|+ +++.++++.-+ -..++++|.| +|....+.+
T Consensus 231 avaiNnldltdp~~m~~llq~l~~m~s~qlTv~R--~G~rhdInV 273 (275)
T COG3031 231 AVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIR--RGKRHDINV 273 (275)
T ss_pred EEEecCcccCCHHHHHHHHHhhhcCcceEEEEEe--cCccceeee
Confidence 556665 66667776633 4579999998 555566554
No 93
>PRK11186 carboxy-terminal protease; Provisional
Probab=56.50 E-value=36 Score=30.35 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=31.0
Q ss_pred EEeeeCc-------------hHHHHHHHccCCCeEEEEEEeCC-CCeEEEEEEec
Q psy18011 93 HILDQDN-------------DTLKELLKNGIDKELKMAVYSSK-TQDVRTVNITP 133 (163)
Q Consensus 93 ~I~~v~~-------------~~l~~~v~~~~~~~v~l~v~r~~-~~~~~~v~v~p 133 (163)
.|++||+ ++..++++..+|.++.|+|.|.+ ++..++++++-
T Consensus 279 ~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R 333 (667)
T PRK11186 279 KIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTR 333 (667)
T ss_pred EEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEe
Confidence 4888872 46788888888999999999843 45667777664
No 94
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.13 E-value=1.6e+02 Score=23.68 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.2
Q ss_pred EEeeeCc------hHHHHHHHcc-CCCeEEEEEEeCCCCeEEEEEEecC
Q psy18011 93 HILDQDN------DTLKELLKNG-IDKELKMAVYSSKTQDVRTVNITPS 134 (163)
Q Consensus 93 ~I~~v~~------~~l~~~v~~~-~~~~v~l~v~r~~~~~~~~v~v~p~ 134 (163)
.|+++|+ .++.+.+..+ +|.++.+.+.| ++..+++.++..
T Consensus 293 ii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r--~g~~~~~~v~l~ 339 (347)
T COG0265 293 IITAVNGKPVASLSDLVAAVASNRPGDEVALKLLR--GGKERELAVTLG 339 (347)
T ss_pred EEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEE--CCEEEEEEEEec
Confidence 3888887 6777777654 69999999999 466777777653
No 95
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=35.93 E-value=21 Score=30.47 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|.|...| .+| ||+|++-||+.|.
T Consensus 308 ENm~~~~A-~rP-gDVi~~~~GkTVE 331 (483)
T PRK00913 308 ENMPSGNA-YRP-GDVLTSMSGKTIE 331 (483)
T ss_pred ccCCCCCC-CCC-CCEEEECCCcEEE
Confidence 57777777 999 9999999998764
No 96
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=35.62 E-value=36 Score=21.53 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=5.1
Q ss_pred hHHHHHHHc
Q psy18011 100 DTLKELLKN 108 (163)
Q Consensus 100 ~~l~~~v~~ 108 (163)
.|+..+++.
T Consensus 29 ~D~~~i~r~ 37 (83)
T PF10623_consen 29 NDPDKIARR 37 (83)
T ss_pred CCHHHHHhh
Confidence 555555554
No 97
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=34.17 E-value=23 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.6
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|.|...| .+| ||+|++-||+.|.
T Consensus 307 ENm~~g~A-~rP-GDVits~~GkTVE 330 (485)
T COG0260 307 ENMPSGNA-YRP-GDVITSMNGKTVE 330 (485)
T ss_pred ccCCCCCC-CCC-CCeEEecCCcEEE
Confidence 56677766 899 9999999998764
No 98
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=33.10 E-value=16 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|+|...| .+| ||+|++-||+.|.
T Consensus 139 EN~i~~~a-~~p-gDVi~s~~GkTVE 162 (311)
T PF00883_consen 139 ENMISGNA-YRP-GDVITSMNGKTVE 162 (311)
T ss_dssp EE--STTS-TTT-TEEEE-TTS-EEE
T ss_pred cccCCCCC-CCC-CCEEEeCCCCEEE
Confidence 45666666 899 9999999998753
No 99
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=32.77 E-value=25 Score=29.93 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|.|...| .+| ||+|++-||+.|.
T Consensus 294 EN~is~~A-~rP-gDVi~s~~GkTVE 317 (468)
T cd00433 294 ENMISGNA-YRP-GDVITSRSGKTVE 317 (468)
T ss_pred ecCCCCCC-CCC-CCEeEeCCCcEEE
Confidence 57777776 899 9999999998764
No 100
>KOG4407|consensus
Probab=32.13 E-value=24 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCCChhhhcCCccCCeEEEEECCEecCCC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQD 30 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~Ing~~v~~~ 30 (163)
|+++.||.-|-||. ||.++.+|.+++..-
T Consensus 150 V~~n~~~~~a~LQ~-~~~V~~v~~q~~A~i 178 (1973)
T KOG4407|consen 150 VQANGPAHYANLQT-GDRVLMVNNQPIAGI 178 (1973)
T ss_pred hccCChhHHHhhhc-cceeEEeecCcccch
Confidence 67899999999999 999999999998754
No 101
>PRK05015 aminopeptidase B; Provisional
Probab=31.68 E-value=30 Score=29.09 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|.|...| .++ ||+|++-||+.|.
T Consensus 245 ENmisg~A-~kp-gDVIt~~nGkTVE 268 (424)
T PRK05015 245 ENLISGNA-FKL-GDIITYRNGKTVE 268 (424)
T ss_pred ccCCCCCC-CCC-CCEEEecCCcEEe
Confidence 56666666 899 9999999998764
No 102
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.03 E-value=38 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=14.6
Q ss_pred hhhcCCccCCeEEEEEC
Q psy18011 7 GQKAGLEAFFDFIVAID 23 (163)
Q Consensus 7 A~~AGL~~~GD~I~~In 23 (163)
|++.|+++ |+.|.+++
T Consensus 1 A~~LG~~~-g~vVqE~g 16 (127)
T PF11253_consen 1 ADKLGFKP-GQVVQEFG 16 (127)
T ss_pred CcccCCCC-CCEEEEeC
Confidence 68899999 99999986
No 103
>KOG3549|consensus
Probab=28.04 E-value=82 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=26.9
Q ss_pred EeeeCc--------hHHHHHHHccCCCeEEEEEEeCC-CCeEEEEEE
Q psy18011 94 ILDQDN--------DTLKELLKNGIDKELKMAVYSSK-TQDVRTVNI 131 (163)
Q Consensus 94 I~~v~~--------~~l~~~v~~~~~~~v~l~v~r~~-~~~~~~v~v 131 (163)
|+.||| ++.++++++ +|..++|+|..-+ .--++.+.+
T Consensus 105 ilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~~lr~ApaFLklpL 150 (505)
T KOG3549|consen 105 ILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVKHLRAAPAFLKLPL 150 (505)
T ss_pred eEEeccEEeecCChHHHHHHHHh-cCCEEEEEeHhhhcCcHHhcCcc
Confidence 888888 899999995 8999999996422 234444544
No 104
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=26.05 E-value=47 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCCChhhhcCCccCCeEEEEEC-CEecCC
Q psy18011 1 VQDNSPGQKAGLEAFFDFIVAID-NIRLDQ 29 (163)
Q Consensus 1 V~~~SpA~~AGL~~~GD~I~~In-g~~v~~ 29 (163)
+.++|.|+-.|+.+ ||...+|| |.+..+
T Consensus 8 v~~~~~~d~~Gfe~-~~~l~~Vn~~~~~~~ 36 (414)
T COG1625 8 VGGISGADCDGFEE-GDYLLKVNPGFGCKD 36 (414)
T ss_pred ccCCCcccccCccc-cceeeecCCCCCCCc
Confidence 35789999999999 99999999 765544
No 105
>KOG3938|consensus
Probab=25.19 E-value=50 Score=26.10 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred CCCChhhhcC-CccCCeEEEEECCEecCCChH-HHHHHHHhCC-CCeEEEEEE
Q psy18011 2 QDNSPGQKAG-LEAFFDFIVAIDNIRLDQDND-TLKELLKNGI-DKELKMAVY 51 (163)
Q Consensus 2 ~~~SpA~~AG-L~~~GD~I~~Ing~~v~~~~d-~~~~~l~~~~-~~~v~l~v~ 51 (163)
.+||.-.+.- ++. ||.|.+|||+.+--|.- ...+++...+ +++.++.+.
T Consensus 157 kegsvidri~~i~V-Gd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 157 KEGSVIDRIEAICV-GDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred cCCchhhhhhheeH-HhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEee
Confidence 4566665543 677 99999999999988853 2345555433 344444443
No 106
>KOG2597|consensus
Probab=23.71 E-value=48 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.9
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|+|.-.| -++ ||+|+.-||+.|.
T Consensus 329 ENm~sg~A-~kp-gDVit~~nGKtve 352 (513)
T KOG2597|consen 329 ENMPSGNA-TKP-GDVITLRNGKTVE 352 (513)
T ss_pred ccCCCccC-CCC-CcEEEecCCcEEE
Confidence 57777766 899 9999999998764
No 107
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=23.56 E-value=51 Score=20.89 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=8.9
Q ss_pred hhhh-cCCccCCeEEE
Q psy18011 6 PGQK-AGLEAFFDFIV 20 (163)
Q Consensus 6 pA~~-AGL~~~GD~I~ 20 (163)
|+++ .|+++ ||.|.
T Consensus 45 Pv~r~~g~k~-GdVvk 59 (79)
T PRK09570 45 PVVKAIGAKP-GDVIK 59 (79)
T ss_pred hhhhhcCCCC-CCEEE
Confidence 4444 48888 88654
No 108
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=22.65 E-value=49 Score=28.85 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=19.3
Q ss_pred CCChhhhcCCccCCeEEEEECCEecC
Q psy18011 3 DNSPGQKAGLEAFFDFIVAIDNIRLD 28 (163)
Q Consensus 3 ~~SpA~~AGL~~~GD~I~~Ing~~v~ 28 (163)
+|.|...| .+| ||+|++-||+.|.
T Consensus 353 ENm~sg~A-~rP-GDVits~nGkTVE 376 (569)
T PTZ00412 353 ENAIGPES-YHP-SSIITSRKGLTVE 376 (569)
T ss_pred hcCCCCCC-CCC-CCEeEecCCCEEe
Confidence 46666666 899 9999999998753
No 109
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=20.83 E-value=80 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=13.6
Q ss_pred hhhhcCCccCCeEEEEECC
Q psy18011 6 PGQKAGLEAFFDFIVAIDN 24 (163)
Q Consensus 6 pA~~AGL~~~GD~I~~Ing 24 (163)
-|++.||+. ||.|.-.|+
T Consensus 43 dA~~lgi~~-Gd~V~v~~~ 60 (122)
T cd02791 43 DAARLGLKE-GDLVRVTSR 60 (122)
T ss_pred HHHHcCCCC-CCEEEEEcC
Confidence 377889999 998865544
No 110
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.33 E-value=37 Score=18.75 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.9
Q ss_pred hhcCCccCCeEE
Q psy18011 8 QKAGLEAFFDFI 19 (163)
Q Consensus 8 ~~AGL~~~GD~I 19 (163)
.+.||++ ||.|
T Consensus 17 ~~l~l~~-Gd~v 27 (47)
T PF04014_consen 17 EKLGLKP-GDEV 27 (47)
T ss_dssp HHTTSST-TTEE
T ss_pred HHcCCCC-CCEE
Confidence 3344444 4443
No 111
>KOG3369|consensus
Probab=20.17 E-value=51 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred hhhhcCCccCCeEEEEECCEecCCC
Q psy18011 6 PGQKAGLEAFFDFIVAIDNIRLDQD 30 (163)
Q Consensus 6 pA~~AGL~~~GD~I~~Ing~~v~~~ 30 (163)
.+.+-|++. |..+.++||.++.-.
T Consensus 46 f~~kdgik~-~~~~~~vNg~~v~g~ 69 (199)
T KOG3369|consen 46 FGSKDGIKV-GHLVQAVNGENVNGY 69 (199)
T ss_pred eecccccch-hheeeeecccccccc
Confidence 467889999 999999999988653
No 112
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=20.11 E-value=30 Score=21.92 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=16.3
Q ss_pred hhhhcCCccCCeEEEEECCEecCCCh
Q psy18011 6 PGQKAGLEAFFDFIVAIDNIRLDQDN 31 (163)
Q Consensus 6 pA~~AGL~~~GD~I~~Ing~~v~~~~ 31 (163)
.++++|+.+ .|+.+.+.-.+-.+|+
T Consensus 56 L~~~~gi~p-~Dv~I~l~e~~~edWS 80 (82)
T PF14552_consen 56 LAEKLGIRP-EDVMIVLVENPREDWS 80 (82)
T ss_dssp HHHHH---G-GGEEEEEEEE-GGGEE
T ss_pred HHHHcCCCH-HHEEEEEEECCcccCC
Confidence 356789999 9999998777777773
Done!