RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18011
(163 letters)
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 34.9 bits (80), Expect = 6e-04
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 60
V AG+ + +D+ ++ + + + + + + RT
Sbjct: 23 VVAGGAAANAGVPK-GVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ-DPSGGSRT 80
Query: 61 VNIT 64
V +T
Sbjct: 81 VQVT 84
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C,
EpsC {Vibrio cholerae [TaxId: 666]}
Length = 87
Score = 29.2 bits (65), Expect = 0.074
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVY 51
+D + GL+ D VA++ + L N E+ + V
Sbjct: 26 GKDPVLFESIGLQD-GDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.9 bits (62), Expect = 0.23
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRL-DQDNDTLKELLKNGIDKELKMAV 50
VQ NSP GL ++ I+ +D ++LK +++ M +
Sbjct: 32 VQANSPASLVGLRFGD-QVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 81
>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 27.7 bits (61), Expect = 0.23
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 3 DNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVN 62
+ SP + G++ I ID + + +L ++ + S K D R +
Sbjct: 29 EKSPIFEYGIDPTGYLIEDIDGETV-GAGSNIYRVLSEKAGTSARIRL-SGKGGDKRDLM 86
Query: 63 IT 64
I
Sbjct: 87 ID 88
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 108
Score = 26.2 bits (57), Expect = 1.3
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 2 QDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKN--GIDKELKMA 49
G+ +G + + A + D + + E L N KMA
Sbjct: 37 LHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMA 86
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 26.6 bits (57), Expect = 1.3
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 92 WHILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQ 140
+Q + L L + I+ + + QDVR + + G+
Sbjct: 159 RCHYNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGR 207
Score = 26.6 bits (57), Expect = 1.5
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 13 EAFFDFIVAIDNIRLDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRTVNITPSNSWGGQ 72
+A ++ +Q + L L + I+ + + QDVR + + G+
Sbjct: 148 KAANKKLMIGYRCHYNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGR 207
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal
domains {Escherichia coli [TaxId: 562]}
Length = 88
Score = 24.5 bits (53), Expect = 3.3
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQDNDTLKELLKNG 41
V+ +P + GL+ I+ + + + K L
Sbjct: 32 VKTGTPAAQIGLKKGD-VIIGANQQAVKNIAELRKVLDSKP 71
>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 25.0 bits (55), Expect = 3.7
Identities = 3/35 (8%), Positives = 18/35 (51%)
Query: 94 ILDQDNDTLKELLKNGIDKELKMAVYSSKTQDVRT 128
++ D + L+++ + +++++ ++Y +
Sbjct: 60 VMATDQEALRKIHQRSLERDITTSLYIEEMFATGH 94
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 24.9 bits (54), Expect = 3.7
Identities = 3/41 (7%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRLDQ-DNDTLKELLKN 40
+ ++ G ++ + I L + ++ ++
Sbjct: 56 ILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ 96
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein
2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 24.1 bits (52), Expect = 5.0
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRL-DQDNDTLKELLKNG 41
++ +SP ++ GL D +++I+ I D + +LL++
Sbjct: 45 IEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA 86
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.8 bits (51), Expect = 8.3
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIR-LDQDNDTLKELLKNG 41
++ +SP ++ G+ D ++AI+ I D + +LL++
Sbjct: 52 IEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 23.2 bits (50), Expect = 8.3
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 1 VQDNSPGQKAGLEAFFDFIVAIDNIRL-DQDNDTLKELLKN 40
+ + G D I I+ I + +Q + L+++L+
Sbjct: 32 IMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE 72
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 24.2 bits (52), Expect = 8.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 92 WHILDQDNDTLKELLKNG 109
I++Q N +L+ + G
Sbjct: 18 KTIMEQFNPSLRNFIAMG 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.397
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,312
Number of extensions: 25633
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 16
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)