BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18013
(563 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 217 AELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCN 274
AEL+AI L L+ + + IV+DS+ AL +++ + +P+V ++ +L
Sbjct: 1063 AELMAILLALQ----DSKETVNIVTDSQYALGVISSQPTQSESPIVQQIIE-----ELTK 1113
Query: 275 KEVTFM-WCPSHCGIRGNEIVD 295
KE ++ W P+H GI GNE +D
Sbjct: 1114 KEQVYLTWVPAHKGIGGNEKID 1135
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 183 YTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSD 242
YTDG K A+ +R + N AEL A+ + L+ + P+ + I++D
Sbjct: 966 YTDGGKKGSKAAAAYWREGKIRREVFPGTNQ--QAELKAVLMALQ---DGPA-KMNIITD 1019
Query: 243 SRSALAALANVKFSNPLVTKVFSTWRYL--KLCNKE-VTFMWCPSHCGIRGNEIVDDAAK 299
SR A + P W+ + +L KE V W P H GI GN VD +
Sbjct: 1020 SRYAFEGMR----EEPETWGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQ 1075
Query: 300 NPNVSAPLKLCTPEDL 315
+ P+ + P+++
Sbjct: 1076 KA-LQGPITVSLPQEI 1090
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 217 AELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCN 274
AEL+A+ + L+ + +Q IV+DS+ L +++ + +P+V ++ +L
Sbjct: 1065 AELMAVLIALQ----DSKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQIIE-----ELTK 1115
Query: 275 KEVTFM-WCPSHCGIRGNEIVD 295
KE ++ W P+H GI GNE +D
Sbjct: 1116 KERVYLTWVPAHKGIGGNEKID 1137
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDV-TGCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + D +G A + D R +++ ++ EL AI L L+ + + IV
Sbjct: 1028 YVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQ----DSGLEVNIV 1083
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV+++ +L KE ++ W P+H GI GNE VD
Sbjct: 1084 TDSQYALGIIQAQPDKSESELVSQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1136
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 183 YTDGSKSPDV-TGCAFSIGDMVRS---TLLNPINSIFSAELIAIFLCLEAILENPSDQFL 238
Y DG+ + + TG A + D R TL + N EL AI+L L + +
Sbjct: 1025 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQ--KTELHAIYLALR----DSGLEVN 1078
Query: 239 IVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
IV+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1079 IVTDSQYALGIIQAQPDKSESELVNQIIE-----ELIKKEKVYLSWVPAHKGIGGNEQVD 1133
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 183 YTDGSKSPDV----TGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFL 238
Y DG+ + D G + G L N N AEL A+ L L+ + Q
Sbjct: 1055 YVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQ--QAELWAVDLALK----DSGAQVN 1108
Query: 239 IVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
IV+DS+ + L + + +P+V ++ KL K ++ W P+H GI GNE VD
Sbjct: 1109 IVTDSQYVMGVLQGLPDQSDSPIVEQIIQ-----KLTQKTAIYLAWVPAHKGIGGNEEVD 1163
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 216 SAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLC 273
AEL AI + LE + + IV+DS+ A+ L + +PLV ++ + ++
Sbjct: 1089 QAELTAIKMALE----DSGPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIA-----QMV 1139
Query: 274 NKEVTFM-WCPSHCGIRGNEIVD 295
KE ++ W P+H GI GNE +D
Sbjct: 1140 QKEAIYLQWVPAHKGIGGNEEID 1162
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D R +++ N+ AEL AI L L+ + IV
Sbjct: 1038 YVDGAANKETKLGKAGFVTDRGRQKVVSIENTTNQKAELQAILLALQ----ESGQEANIV 1093
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ A+ + + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1094 TDSQYAMGIIHSQPDKSESDLVGQIIE-----ELIKKERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 183 YTDGSKSPDV-TGCAFSIGDMVRS---TLLNPINSIFSAELIAIFLCLEAILENPSDQFL 238
Y DG+ + + G A + D R TL + N EL AI+L L+ + +
Sbjct: 1025 YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQ--KTELQAIYLALQ----DSGIEVN 1078
Query: 239 IVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
IV+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1079 IVTDSQYALGIIQAQPDKSESELVNQIIE-----ELIKKEKVYLSWVPAHKGIGGNEQVD 1133
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 200 GDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSN 257
G TL N N A+L AI + LE N + IV+DS+ A+ L + +
Sbjct: 1078 GKQRVETLENTTNQ--QAKLTAIKMALEDSGPNVN----IVTDSQYAMGILTAQPTQSDS 1131
Query: 258 PLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVD 295
PLV ++ + L + +++ W P+H GI GNE +D
Sbjct: 1132 PLVEQIIA----LMIQKQQIYLQWVPAHKGIGGNEEID 1165
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D + +++ + AEL AI+L L+ + + IV
Sbjct: 1023 YVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLALQ----DSGSEVNIV 1078
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + +V ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1079 TDSQYALGIIQAQPDKSESEIVNQIIE-----QLIQKERVYLSWVPAHKGIGGNEQVD 1131
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 39.7 bits (91), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D R +++ ++ AEL AI + L+ E+ D IV
Sbjct: 1038 YVDGAANRETKLGKAGFVTDRGRQKVVSIADTTNQKAELQAILMALQ---ESGRD-VNIV 1093
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ A+ + + K + LV+++ +L KE ++ W P+H GI GNE VD
Sbjct: 1094 TDSQYAMGIIHSQPDKSESELVSQIIE-----ELIKKERVYLSWVPAHKGIGGNEQVD 1146
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + ++ G A + D R +++ + EL AI L L+ + + IV
Sbjct: 1024 YVDGAANREIKMGKAGYVTDRGRQKIVSITETTNQKTELQAIQLALQ----DSGSEVNIV 1079
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1080 TDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKERVYLSWVPAHKGIGGNEQVD 1132
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D R ++ + AEL AI L L+ + + IV
Sbjct: 1023 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQ----DSGSEVNIV 1078
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1079 TDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKEKVYLSWVPAHKGIGGNEQVD 1131
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 39.3 bits (90), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSIFS--AELIAIFLCLEAILENPSDQFLI 239
Y DG+ + + G A + D R ++ P+ + EL AI L L+ + + I
Sbjct: 1023 YVDGAANRETKLGKAGYVTDRGRQKVV-PLTETTNQKTELQAIHLALQ----DSGSEVNI 1077
Query: 240 VSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
V+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1078 VTDSQYALGIIQAQPDKSESELVNQIIE-----QLIQKEKVYLSWVPAHKGIGGNEQVD 1131
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 183 YTDGSKSPDVTGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVS 241
YTDG K A+ + + L P+ AE +AI + LE + Q IV+
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 678
Query: 242 DS----RSALAALANVKFSNPLVTKVFSTWRYLK-LCNKEVT-FMWCPSHCGIRGNEIVD 295
DS ++ L NP W ++ + KE+ F W P H GI GN++ D
Sbjct: 679 DSYYCWKNITEGLGLEGPQNPW-------WPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 731
Query: 296 DAAK 299
+AAK
Sbjct: 732 EAAK 735
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 39.3 bits (90), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + G A + D R +++ + AEL AI L L+ + + IV
Sbjct: 1023 YVDGAAHRETKKGRAGYVTDRGRQKVVSITETTNQKAELQAICLALQ----DSGSEVNIV 1078
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1079 TDSQYALGIIQAQPDKSESDLVNQIIE-----QLIKKERIYLSWVPAHKGIGGNEQVD 1131
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 153 EEKKSDVAPVVFQQ---KFSEAINTKYANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLN 209
EE + + PV F + +++ N T YTDG K + +S +
Sbjct: 973 EESLTQIFPVKFYRHSCRWTSICGPVRENLTTYYTDGGKKGKTAAAVYWCEGRTKSKVFP 1032
Query: 210 PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVKFSNPLVTKVFSTWRY 269
N AEL AI C+ A+L+ P + I++DSR A + P W
Sbjct: 1033 GTNQ--QAELKAI--CM-ALLDGPP-KMNIITDSRYAYEGMR----EEPETWAREGIWLE 1082
Query: 270 LKLC---NKEVTFMWCPSHCGIRGNEIVDDAAKN 300
+ + V W P+H GI GN D+ K
Sbjct: 1083 IAKILPFKQYVGVGWVPAHKGIGGNTEADEGVKK 1116
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 183 YTDGSKSPDV----TGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFL 238
Y DG+ S + G + G TL + N EL AI L L+ + +
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQ--KTELQAIHLALQ----DSGLEVN 1093
Query: 239 IVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
IV+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1094 IVTDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + + R ++ N+ EL AI+L L+ + + IV
Sbjct: 1040 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ----DSGLEVNIV 1095
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1096 TDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D R +++ + EL AI L L+ + + IV
Sbjct: 1021 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ----DSGSEVNIV 1076
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + + + +V ++ KL KE ++ W P+H GI GNE VD
Sbjct: 1077 TDSQYALGIIQAQPDRSESEIVNQIIE-----KLIEKEKVYLSWVPAHKGIGGNEQVD 1129
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + + R ++ N+ EL AI+L L+ + + IV
Sbjct: 1028 YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQ----DSGLEVNIV 1083
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1084 TDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1136
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 183 YTDGSKSPDV----TGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFL 238
Y DG+ S + G + G TL + N EL AI L L+ + +
Sbjct: 1040 YVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQ--KTELQAIHLALQ----DSGLEVN 1093
Query: 239 IVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
IV+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1094 IVTDSQYALGIIQAQPDKSESELVNQIIE-----QLIKKEKVYLAWVPAHKGIGGNEQVD 1148
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 177 ANHTICYTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPS 234
A Y DG+ + + G A + D + +++ + EL AI+L L+ +
Sbjct: 1022 AGAETYYIDGAANRETKLGKAGYVTDRGKQKVVSLTETTNQKTELQAIYLALQ----DSG 1077
Query: 235 DQFLIVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGN 291
+ IV+DS+ AL + K + LV ++ +L KE ++ W P+H GI GN
Sbjct: 1078 LEVNIVTDSQYALGIIQAQPDKSESELVNQIIE-----ELIKKEKVYLSWVPAHKGIGGN 1132
Query: 292 EIVD 295
E VD
Sbjct: 1133 EQVD 1136
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + + G A + D + +++ + EL AI+L L+ + IV
Sbjct: 1029 YVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQ----ESGPEVNIV 1084
Query: 241 SDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFM-WCPSHCGIRGNEIVD 295
+DS+ AL + K + LV ++ +L KE ++ W P+H GI GNE VD
Sbjct: 1085 TDSQYALGIIQAQPDKSESELVNQIIE-----ELIKKEKFYLSWVPAHKGIGGNEQVD 1137
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 183 YTDGSKSPDVTGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVS 241
YTDG K A+ + + L P+ AE +AI + LE + Q IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 242 DSRSALAALANVKFSNPLVTKVFSTWRYLK-LCNKEVT-FMWCPSHCGIRGNEIVDDAAK 299
DS N+ L W ++ + KE+ F W P H GI GN++ D+AAK
Sbjct: 680 DS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 183 YTDGSKSPDVTGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVS 241
YTDG K A+ + + L P+ AE +AI + LE + Q IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 242 DSRSALAALANVKFSNPLVTKVFSTWRYLK-LCNKEVT-FMWCPSHCGIRGNEIVDDAAK 299
DS N+ L W ++ + KE+ F W P H GI GN++ D+AAK
Sbjct: 680 DS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 183 YTDGSKSPDVT-GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQFLIV 240
Y DG+ + D G A I D + +N+ EL A+ L LE + IV
Sbjct: 1037 YVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQTELHAVKLALE----DSGSYVNIV 1092
Query: 241 SDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVD 295
+DS+ + LA+ + +P+V ++ L +++ W P+H GI GNE +D
Sbjct: 1093 TDSQYVVGILASRPTETDHPIVKEIIE----LMKGKEKIYLSWLPAHKGIGGNEQID 1145
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 181 ICYTDGSKSPDVT--GCAFSIGDMVRSTLLNPINSI-FSAELIAIFLCLEAILENPSDQF 237
+ Y DG+ S VT G A + + +S + N+ AEL A+ + LE EN +
Sbjct: 1048 VYYVDGAAS-KVTKLGKAGYLSERGKSRIRELENTTNQQAELTAVKMALEDSGENVN--- 1103
Query: 238 LIVSDSRSALAALANV--KFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVD 295
IV+DS+ + L + ++PLV ++ + ++V W P+H GI GN +D
Sbjct: 1104 -IVTDSQYVMNILTACPQESNSPLVEQIIQA----LMKKRQVYLQWVPAHKGIGGNTEID 1158
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 181 ICYTDGS----KSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQ 236
+ Y DG+ G G L N N AEL+AI + LE N +
Sbjct: 1053 VYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQ--QAELMAIKMALEDSGPNVN-- 1108
Query: 237 FLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIV 294
IV+DS+ A+ L + +PL+ ++ + L + ++ W P+ GI GNE +
Sbjct: 1109 --IVTDSQYAMGILTAQPTQSDSPLIEQIIA----LMVQKHQIYLQWVPADKGIGGNEEI 1162
Query: 295 D 295
D
Sbjct: 1163 D 1163
>sp|Q9UYX2|SYFB_PYRAB Phenylalanine--tRNA ligase beta subunit OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=pheT PE=3 SV=1
Length = 556
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 47 GALRSSPVVSLYVDSGVPPLTLRRSKLMLNYVAKISASPFNPAQ-KLLYHQDMSGIIFTV 105
G +RS V+ + P LT +R ++ LNY+ K+S + K L + M +
Sbjct: 259 GKIRSVKVIYKDFEIVTPDLTPKRFEVELNYIRKLSGLDLKDEEIKELLERMMYSVELED 318
Query: 106 NKPKPLYIRFR-EVANFNNVLESSEVA 131
K K LY FR ++ + +VLE +A
Sbjct: 319 GKAKLLYPAFRDDIMHARDVLEDVLIA 345
>sp|P0CO60|ATG15_CRYNJ Putative lipase ATG15 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=ATG15 PE=3
SV=1
Length = 522
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 226 LEAILENPSDQF----LIVSD--SRSALAALANVKFSNPLVTKVFSTWRYLKLCNKEVTF 279
L L NPSD++ + V D R + LA + SN VT + W L N + F
Sbjct: 143 LAPDLANPSDEWSDVEVTVPDLTDRQTVITLAKMS-SNAYVTPGGAGWYTLNDWNASMPF 201
Query: 280 MWCPSHCGIRGNEIVDD 296
W P G+RG+ D+
Sbjct: 202 GWEPDADGLRGHVFADE 218
>sp|P0CO61|ATG15_CRYNB Putative lipase ATG15 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=ATG15 PE=3 SV=1
Length = 519
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 226 LEAILENPSDQF----LIVSD--SRSALAALANVKFSNPLVTKVFSTWRYLKLCNKEVTF 279
L L NPSD++ + V D R + LA + SN VT + W L N + F
Sbjct: 143 LAPDLANPSDEWSDVEVTVPDLTDRQTVITLAKMS-SNAYVTPGGAGWYTLNDWNASMPF 201
Query: 280 MWCPSHCGIRGNEIVDD 296
W P G+RG+ D+
Sbjct: 202 GWEPDADGLRGHVFADE 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,997,032
Number of Sequences: 539616
Number of extensions: 8216401
Number of successful extensions: 17240
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 17227
Number of HSP's gapped (non-prelim): 45
length of query: 563
length of database: 191,569,459
effective HSP length: 123
effective length of query: 440
effective length of database: 125,196,691
effective search space: 55086544040
effective search space used: 55086544040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)