Query psy18013
Match_columns 563
No_of_seqs 294 out of 1492
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:16:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 99.8 5.9E-20 1.3E-24 166.2 8.4 116 178-301 2-130 (132)
2 PRK06548 ribonuclease H; Provi 99.8 2.7E-19 5.9E-24 169.0 12.2 123 177-302 3-140 (161)
3 PRK08719 ribonuclease H; Revie 99.8 3E-19 6.5E-24 166.7 12.0 119 178-301 3-144 (147)
4 COG0328 RnhA Ribonuclease HI [ 99.8 3.8E-18 8.2E-23 159.1 12.8 123 178-301 2-142 (154)
5 PRK00203 rnhA ribonuclease H; 99.8 2.3E-18 4.9E-23 161.2 10.8 122 179-305 3-142 (150)
6 cd06222 RnaseH RNase H (RNase 99.7 2.2E-16 4.7E-21 138.2 13.4 121 181-301 1-129 (130)
7 KOG3752|consensus 99.6 3.5E-15 7.5E-20 154.7 10.9 127 176-302 209-363 (371)
8 PRK13907 rnhA ribonuclease H; 99.6 1.7E-14 3.8E-19 130.9 11.5 117 180-301 2-124 (128)
9 PRK07708 hypothetical protein; 99.3 8.4E-12 1.8E-16 123.9 13.0 124 176-304 70-207 (219)
10 PRK07238 bifunctional RNase H/ 99.3 3.7E-11 8.1E-16 128.3 13.1 118 179-301 2-129 (372)
11 PF13456 RVT_3: Reverse transc 99.0 1.6E-09 3.4E-14 90.5 7.7 84 214-301 1-84 (87)
12 PF13966 zf-RVT: zinc-binding 82.1 0.73 1.6E-05 38.8 1.4 18 408-425 62-80 (86)
13 PF00336 DNA_pol_viral_C: DNA 60.3 9 0.0002 37.9 3.3 63 176-247 91-153 (245)
14 PF05380 Peptidase_A17: Pao re 58.5 25 0.00055 33.1 6.1 52 178-231 80-143 (159)
15 COG0296 GlgB 1,4-alpha-glucan 30.1 60 0.0013 37.6 4.3 36 260-295 213-248 (628)
16 PRK11788 tetratricopeptide rep 27.4 37 0.00081 35.6 2.0 32 384-420 351-383 (389)
17 KOG4484|consensus 27.1 9.2 0.0002 36.6 -2.3 61 492-552 102-169 (199)
18 PRK00762 hypA hydrogenase nick 22.9 46 0.00099 30.3 1.4 28 386-413 69-100 (124)
19 PRK10933 trehalose-6-phosphate 21.8 1.9E+02 0.004 33.1 6.3 72 217-288 30-108 (551)
20 PF11238 DUF3039: Protein of u 20.7 56 0.0012 25.9 1.2 23 391-413 30-52 (58)
21 COG1326 Uncharacterized archae 20.4 18 0.00039 35.5 -1.9 69 405-496 6-74 (201)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.81 E-value=5.9e-20 Score=166.21 Aligned_cols=116 Identities=33% Similarity=0.420 Sum_probs=88.3
Q ss_pred CcEEEEecCCCCC--CcceEEEEeC-CeeeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhc--
Q psy18013 178 NHTICYTDGSKSP--DVTGCAFSIG-DMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN-- 252 (563)
Q Consensus 178 ~~i~IyTDGS~~~--~~vG~gvv~~-~~~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~-- 252 (563)
..+.||||||... +..|+|+++. +...++.++ ..+++.|||.||..||+.+ . ...++|+|||++++..+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHHHh-h--cccccccccHHHHHHHHHHhc
Confidence 4789999999764 3356666543 334445566 7899999999999999944 3 4999999999999998777
Q ss_pred ---cCCCC----hhHHHHHHHHHHHhhcCCeEEEEeecCccCC-cCChHHHHHhcCC
Q psy18013 253 ---VKFSN----PLVTKVFSTWRYLKLCNKEVTFMWCPSHCGI-RGNEIVDDAAKNP 301 (563)
Q Consensus 253 ---~~~~s----~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi-~GNE~AD~lAK~A 301 (563)
..... ++..+|++.+ ..+..|.|.|||||+|+ .|||.||+|||+|
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~~~----~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a 130 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWELL----SRGIKVRFRWVPGHSGVPQGNERADRLAKEA 130 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHHHH----HHSSEEEEEESSSSSSSHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheeecc----ccceEEeeeeccCcCCCchhHHHHHHHHHHh
Confidence 33221 3445555533 55889999999999999 6999999999987
No 2
>PRK06548 ribonuclease H; Provisional
Probab=99.80 E-value=2.7e-19 Score=168.99 Aligned_cols=123 Identities=25% Similarity=0.317 Sum_probs=95.1
Q ss_pred CCcEEEEecCCCCCC--cceEEEEeCCe-eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhc-
Q psy18013 177 ANHTICYTDGSKSPD--VTGCAFSIGDM-VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN- 252 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~--~vG~gvv~~~~-~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~- 252 (563)
+..+.||||||+..+ ..|+|+++... ..+... ...|++.|||.||+.||+.+.. ....|.|+|||+++++++..
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~-~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W 80 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGW-DIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKW 80 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEccCC-CCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHH
Confidence 356999999998864 47888776543 122122 3579999999999999986653 34579999999999999983
Q ss_pred --------cCCCC--hhH-HHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCC
Q psy18013 253 --------VKFSN--PLV-TKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPN 302 (563)
Q Consensus 253 --------~~~~s--~~~-~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa 302 (563)
+...+ ++. +++++++..+..+ ..|+|.|||||+|++|||.||+||++|+
T Consensus 81 ~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa 140 (161)
T PRK06548 81 VYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAA 140 (161)
T ss_pred HHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 32222 343 6788888877765 4799999999999999999999999993
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.80 E-value=3e-19 Score=166.72 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=92.7
Q ss_pred CcEEEEecCCCCCCc-----ceEEEEeC--C--e--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHH
Q psy18013 178 NHTICYTDGSKSPDV-----TGCAFSIG--D--M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSA 246 (563)
Q Consensus 178 ~~i~IyTDGS~~~~~-----vG~gvv~~--~--~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sa 246 (563)
..++||||||+.+++ .|+|+++. + . ..+..+....|++.||+.|+..||+.+.+. ..|+|||+++
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 568999999997643 48887642 2 1 234445556899999999999999998753 3799999999
Q ss_pred HHHHh--------ccCCCC---hh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 247 LAALA--------NVKFSN---PL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 247 l~aL~--------~~~~~s---~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
++.+. +.+..+ ++ -.++++.+..|.. ...|+|.|||||+|++|||.||+||++|
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a 144 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAA 144 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHH
Confidence 99983 443322 22 2577777777766 4679999999999999999999999998
No 4
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.8e-18 Score=159.11 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=101.1
Q ss_pred CcEEEEecCCCCCC--cceEEEEeC--Cee--eeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIG--DMV--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~--~~~--~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
..+.||||||+..+ ..|+|++.. +.. .+..+. .+|++.||+.|++.||+++.+.+...|.|+|||+++++.|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 35899999998864 478886654 222 334444 78999999999999999999888999999999999999998
Q ss_pred ccCC---C--------Ch-hHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 252 NVKF---S--------NP-LVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 252 ~~~~---~--------s~-~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
.+.. . .| -..++++++.++..+...|.+.|||||.|.++||.||+||+.|
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~ 142 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREA 142 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHH
Confidence 4311 1 12 2468888888888888899999999999999999999999999
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.76 E-value=2.3e-18 Score=161.18 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=91.3
Q ss_pred cEEEEecCCCCCC--cceEEEEeC--Cee--eeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhc
Q psy18013 179 HTICYTDGSKSPD--VTGCAFSIG--DMV--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN 252 (563)
Q Consensus 179 ~i~IyTDGS~~~~--~vG~gvv~~--~~~--~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~ 252 (563)
.+.||||||+..+ ..|+|++.. +.. .+... ...|++.|||.|+..||+.+.+ ...+.|+|||+++++.|..
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~-~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~ 79 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGE-ALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITE 79 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCC-CCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHH
Confidence 4899999998854 478886653 222 22223 3578999999999999998865 4679999999999999985
Q ss_pred c--------C-CC--Chh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCccC
Q psy18013 253 V--------K-FS--NPL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSA 305 (563)
Q Consensus 253 ~--------~-~~--s~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~~ 305 (563)
+ . .. .++ -.++++.+..+... ..|.|.|||||+|++|||.||+|||+| ...
T Consensus 80 w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~-~~v~~~wV~~H~~~~~N~~AD~lA~~a-~~~ 142 (150)
T PRK00203 80 WIHGWKKNGWKTADKKPVKNVDLWQRLDAALKR-HQIKWHWVKGHAGHPENERCDELARAG-AEE 142 (150)
T ss_pred HHHHHHHcCCcccCCCccccHHHHHHHHHHhcc-CceEEEEecCCCCCHHHHHHHHHHHHH-HHH
Confidence 2 1 11 122 24566666666543 789999999999999999999999999 543
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.70 E-value=2.2e-16 Score=138.22 Aligned_cols=121 Identities=30% Similarity=0.350 Sum_probs=96.7
Q ss_pred EEEecCCCCCC--cceEEEEeCCe--e---eeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhcc
Q psy18013 181 ICYTDGSKSPD--VTGCAFSIGDM--V---RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (563)
Q Consensus 181 ~IyTDGS~~~~--~vG~gvv~~~~--~---~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~~ 253 (563)
.+|||||...+ ++|+|++..+. . .........+++.+|+.|+..||+.+......++.|++||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999998865 68888776542 1 11122246899999999999999999988899999999999999999987
Q ss_pred CC-CChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 254 KF-SNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 254 ~~-~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
.. .......++..+..+...+..+.|.|||+|+|+.+|+.||.|||+|
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~ 129 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEA 129 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence 65 2233445555555555678899999999999999999999999987
No 7
>KOG3752|consensus
Probab=99.60 E-value=3.5e-15 Score=154.69 Aligned_cols=127 Identities=26% Similarity=0.265 Sum_probs=101.1
Q ss_pred cCCcEEEEecCCCCCC-----cceEEEEeCCe---eeeeecC-CCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHH
Q psy18013 176 YANHTICYTDGSKSPD-----VTGCAFSIGDM---VRSTLLN-PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSA 246 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~-----~vG~gvv~~~~---~~~~~L~-~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sa 246 (563)
.-+..++|||||...+ .+|+|+++++. ..++.+. ..+++|.|||.||..||+.+.+.+..+++|.|||..+
T Consensus 209 ~~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~ 288 (371)
T KOG3752|consen 209 EIEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYF 288 (371)
T ss_pred cccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHH
Confidence 4455999999998874 38999998753 5667764 7899999999999999999999888899999999999
Q ss_pred HHHHhccCCC-----------Ch----h--HHHHHHHHHHHhh--cCCeEEEEeecCccCCcCChHHHHHhcCCC
Q psy18013 247 LAALANVKFS-----------NP----L--VTKVFSTWRYLKL--CNKEVTFMWCPSHCGIRGNEIVDDAAKNPN 302 (563)
Q Consensus 247 l~aL~~~~~~-----------s~----~--~~~I~~~i~~L~~--~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa 302 (563)
++.|+.+-+. ++ + .+..+..+.+|.+ ++..|.+.|||||.|+.|||.||.+|++++
T Consensus 289 i~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 289 INSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred HHHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 9998765321 12 1 1233344444443 368999999999999999999999999983
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.57 E-value=1.7e-14 Score=130.92 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=94.7
Q ss_pred EEEEecCCCCCC--cceEEEEeCCe----eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhcc
Q psy18013 180 TICYTDGSKSPD--VTGCAFSIGDM----VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (563)
Q Consensus 180 i~IyTDGS~~~~--~vG~gvv~~~~----~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~~ 253 (563)
+.||||||...+ ..|+|+++.+. ..++.. ...++..||+.|++.||+.+...+..++.|++||+.+++.+.+.
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~-~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~ 80 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPL-GTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE 80 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecc-cccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHH
Confidence 679999998763 58999887542 122222 35789999999999999999998888999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 254 KFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 254 ~~~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
...+.....+++.+..|..+...+.+.|||. +.|+.||.+|+.|
T Consensus 81 ~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a 124 (128)
T PRK13907 81 YAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKA 124 (128)
T ss_pred HhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHH
Confidence 6544445666776777777778888999997 5999999999988
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.35 E-value=8.4e-12 Score=123.92 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=93.2
Q ss_pred cCCcEEEEecCCCCC--CcceEEEEeC--Ce--ee----eeecCCCCcchhHHHHHHHHHHHHHHcCCCC--eEEEEecc
Q psy18013 176 YANHTICYTDGSKSP--DVTGCAFSIG--DM--VR----STLLNPINSIFSAELIAIFLCLEAILENPSD--QFLIVSDS 243 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~--~~vG~gvv~~--~~--~~----~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~--~i~I~tDS 243 (563)
.++.+.+|+|||... ++.|+|+++. +. .. ...++...+++.||+.|++.||+.+.+.+.+ .|.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 456899999999864 4588887653 21 11 1235556899999999999999999987654 48999999
Q ss_pred HHHHHHHhccCC-CChhHHHHHHHHHHHhhc-CCeEEEEeecCccCCcCChHHHHHhcCCCcc
Q psy18013 244 RSALAALANVKF-SNPLVTKVFSTWRYLKLC-NKEVTFMWCPSHCGIRGNEIVDDAAKNPNVS 304 (563)
Q Consensus 244 ~sal~aL~~~~~-~s~~~~~I~~~i~~L~~~-~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~ 304 (563)
+.+++.+.+.+. .++..+.+.+.+..+.++ ...+.+.||| .+.|+.||+||+.| .+
T Consensus 150 qlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~A-l~ 207 (219)
T PRK07708 150 QVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQA-LE 207 (219)
T ss_pred HHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHH-Hh
Confidence 999999998764 345555555655544433 4468889998 46899999999999 55
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.26 E-value=3.7e-11 Score=128.29 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=94.9
Q ss_pred cEEEEecCCCCCC--cceEEEEeCCe-------eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHH
Q psy18013 179 HTICYTDGSKSPD--VTGCAFSIGDM-------VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAA 249 (563)
Q Consensus 179 ~i~IyTDGS~~~~--~vG~gvv~~~~-------~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~a 249 (563)
.+.||||||...+ ..|+|+++.+. ..+..++ ..+++.||+.|++.||+.+.+.....+.|++||+.+++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 4789999998865 47888776431 1122344 578889999999999999999888899999999999999
Q ss_pred HhccCC-CChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 250 LANVKF-SNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 250 L~~~~~-~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
+.+... +++-...+.+.+..|.++...+.+.|||. ++|+.||.||+.|
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a 129 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEA 129 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHH
Confidence 988654 44445556666777777778899999996 7899999999998
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=98.98 E-value=1.6e-09 Score=90.51 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhccCCCChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChH
Q psy18013 214 IFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVKFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEI 293 (563)
Q Consensus 214 v~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~~~~~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~ 293 (563)
+..||+.|+..||+.+.+.+.++|.|.|||+.+++.|.+..........+...+..+.+....+.+.||| .++|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 4579999999999999999999999999999999999988543224556666677788888999999999 589999
Q ss_pred HHHHhcCC
Q psy18013 294 VDDAAKNP 301 (563)
Q Consensus 294 AD~lAK~A 301 (563)
||.|||.|
T Consensus 77 A~~LA~~a 84 (87)
T PF13456_consen 77 ADALAKFA 84 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=82.06 E-value=0.73 Score=38.84 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=15.9
Q ss_pred CCCCCC-CCCcCceeccCC
Q psy18013 408 GTNCYT-DGSKSPDVTGCA 425 (563)
Q Consensus 408 C~~C~~-~~tv~Hil~~C~ 425 (563)
|..|+. .||+.|++++||
T Consensus 62 C~~C~~~~Et~~Hlf~~C~ 80 (86)
T PF13966_consen 62 CPLCGNEEETIEHLFFHCP 80 (86)
T ss_pred cccCCCccccccceeccCc
Confidence 777775 799999999999
No 13
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=60.29 E-value=9 Score=37.89 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=39.0
Q ss_pred cCCcEEEEecCCCCCCcceEEEEeCCeeeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHH
Q psy18013 176 YANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSAL 247 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~~vG~gvv~~~~~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal 247 (563)
.+.--+||+|+.- +|+|+.+......+....--.+.+|||.|...|.-+.. .++ |.|||..++
T Consensus 91 r~~lc~VfaDATp----Tgwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~~----~r~-l~tDnt~Vl 153 (245)
T PF00336_consen 91 RPGLCQVFADATP----TGWGISITGQRMRGTFSKPLPIHTAELLAACLARLMSG----ARC-LGTDNTVVL 153 (245)
T ss_pred CCCCCceeccCCC----CcceeeecCceeeeeecccccchHHHHHHHHHHHhccC----CcE-EeecCcEEE
Confidence 3455678999865 44444443322222222234688999999988876652 334 999998665
No 14
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=58.54 E-value=25 Score=33.06 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=32.9
Q ss_pred CcEEEEecCCCCCCcceEEEEeC---Ce--eee-----eec--CCCCcchhHHHHHHHHHHHHHHc
Q psy18013 178 NHTICYTDGSKSPDVTGCAFSIG---DM--VRS-----TLL--NPINSIFSAELIAIFLCLEAILE 231 (563)
Q Consensus 178 ~~i~IyTDGS~~~~~vG~gvv~~---~~--~~~-----~~L--~~~~sv~~AEL~AI~~AL~~a~~ 231 (563)
..+++|+|+|.. +.|+.++.. +. ... .+. -...|+=.-||.|+..|.+.+..
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 578999999953 344444432 11 100 111 12458899999999999988754
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=30.13 E-value=60 Score=37.59 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHH
Q psy18013 260 VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVD 295 (563)
Q Consensus 260 ~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD 295 (563)
-......+....+.|..|-+-|||+|-+..||-.+-
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~ 248 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLAR 248 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhh
Confidence 456777777888999999999999999999987664
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.40 E-value=37 Score=35.60 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=20.7
Q ss_pred CCCCCCCC-CCCCCCccCCCCcccCCCCCCCCCCcCce
Q psy18013 384 GQTGNRGS-LGNREPILREPQAYFEGTNCYTDGSKSPD 420 (563)
Q Consensus 384 ~~~~~~C~-CG~~et~~~~p~~~~~C~~C~~~~tv~Hi 420 (563)
..++..|. ||... ...++.||.|++-+|..-+
T Consensus 351 ~~p~~~c~~cg~~~-----~~~~~~c~~c~~~~~~~~~ 383 (389)
T PRK11788 351 RKPRYRCRNCGFTA-----RTLYWHCPSCKAWETIKPI 383 (389)
T ss_pred CCCCEECCCCCCCC-----ccceeECcCCCCccCcCCc
Confidence 33455675 88532 2357789999987776543
No 17
>KOG4484|consensus
Probab=27.08 E-value=9.2 Score=36.56 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=45.4
Q ss_pred ccccCCchhHHhhhhcccccccceeeeeecc-------eeeccccccccCCcceeeeccccccccccc
Q psy18013 492 KKSTGKTNKQQQRSQEMKPFIKGLCFVLNFP-------LYIGSRSEVLPANHLRVWAKGTLKRNCASK 552 (563)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (563)
-+++|-..+..|-.|.|.-.--.||||-+|| ||-|+.++-.-...-|.|++-...-|.||+
T Consensus 102 ~keS~ad~kd~~i~~qlrk~kidL~YVr~fPk~eKYVsLy~~~~d~q~~e~r~r~~~k~~~~f~a~~~ 169 (199)
T KOG4484|consen 102 IKESGADVKDKQIQQQLRKLKIDLEYVRFFPKNEKYVSLYPGGNDTQVTEPRARIQIKANIIFAAASG 169 (199)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHhcCCccceeeeccCCCCccccccHHHHHHHHHHHHhhccC
Confidence 3466777777666777777777899999999 788877765544444999998877777665
No 18
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.94 E-value=46 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCccCCC----CcccCCCCCCC
Q psy18013 386 TGNRGSLGNREPILREP----QAYFEGTNCYT 413 (563)
Q Consensus 386 ~~~~C~CG~~et~~~~p----~~~~~C~~C~~ 413 (563)
..-.|.||..-++...+ .+++.||.|+.
T Consensus 69 ~~~~C~Cg~~~~~~~~~~~~~~~~~~CP~Cgs 100 (124)
T PRK00762 69 VEIECECGYEGVVDEDEIDHYAAVIECPVCGN 100 (124)
T ss_pred eeEEeeCcCcccccccchhccccCCcCcCCCC
Confidence 34567888542221111 12356888884
No 19
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.78 E-value=1.9e+02 Score=33.07 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEEe-------ccHHHHHHHhccCCCChhHHHHHHHHHHHhhcCCeEEEEeecCccCC
Q psy18013 217 AELIAIFLCLEAILENPSDQFLIVS-------DSRSALAALANVKFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGI 288 (563)
Q Consensus 217 AEL~AI~~AL~~a~~~~~~~i~I~t-------DS~sal~aL~~~~~~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi 288 (563)
+.+.||...|+++.+.+.+.|.+-- |+-+.+.-.....+.=+...++...+..+.++|..|-+-.|+.|++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 4688999999999887777666522 11111100000000112456777788889999999999999999876
No 20
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=20.66 E-value=56 Score=25.94 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=18.5
Q ss_pred CCCCCCCccCCCCcccCCCCCCC
Q psy18013 391 SLGNREPILREPQAYFEGTNCYT 413 (563)
Q Consensus 391 ~CG~~et~~~~p~~~~~C~~C~~ 413 (563)
=||..=.+..+|..||.|+.|..
T Consensus 30 LCGk~wvp~rdp~~~PVCP~Ck~ 52 (58)
T PF11238_consen 30 LCGKVWVPTRDPKPFPVCPECKE 52 (58)
T ss_pred eeCceeCCCCCCCCCCCCcCHHH
Confidence 47876666788989999999974
No 21
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=20.39 E-value=18 Score=35.52 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=41.5
Q ss_pred ccCCCCCCCCCCcCceeccCCCcccccccccccccccccccchhhhhhcchhhhccCCCccccchhhHHHHHHhhhhhcc
Q psy18013 405 YFEGTNCYTDGSKSPDVTGCAFSIGDMVRSTLLNPISSIFSAELIAIFLCLEAILENPSDQFLIVSMKLIQSVIRYQNLS 484 (563)
Q Consensus 405 ~~~C~~C~~~~tv~Hil~~C~~~~~~~~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (563)
|..|++|+ .+.+.|=++.=. -++.|+.|.. ||. =.| |..-.|+...|+..|.=---|
T Consensus 6 y~~Cp~Cg-~eev~hEVik~~------g~~~lvrC~e------------CG~---V~~-~~i~~~k~~~v~viVS~~~~S 62 (201)
T COG1326 6 YIECPSCG-SEEVSHEVIKER------GREPLVRCEE------------CGT---VHP-AIIKTPKPVRVRVIVSRHEES 62 (201)
T ss_pred EEECCCCC-cchhhHHHHHhc------CCceEEEccC------------CCc---Eee-ceeeccccceEEEEEecCCcc
Confidence 45799999 555555332221 2335555555 552 111 233467778888877666668
Q ss_pred cccceecccccC
Q psy18013 485 ANGSVNLKKSTG 496 (563)
Q Consensus 485 ~~~~~~~~~~~~ 496 (563)
-++.+++.|.+.
T Consensus 63 ~~~~vel~~gE~ 74 (201)
T COG1326 63 FTKEVELDPGET 74 (201)
T ss_pred cceeEecCCCCe
Confidence 888888887654
Done!