Query psy18013
Match_columns 563
No_of_seqs 294 out of 1492
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:17:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 5.5E-21 1.9E-25 177.8 11.2 127 176-304 4-150 (154)
2 3qio_A GAG-POL polyprotein; RN 99.8 2.5E-20 8.5E-25 173.2 11.8 123 175-302 8-145 (150)
3 2kq2_A Ribonuclease H-related 99.8 1.6E-21 5.5E-26 180.4 1.4 126 176-306 3-138 (147)
4 3h08_A RNH (ribonuclease H); R 99.8 1.2E-20 4.1E-25 173.8 6.9 121 178-302 3-142 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.8 1.6E-19 5.6E-24 168.2 7.7 124 178-306 3-144 (155)
6 3p1g_A Xenotropic murine leuke 99.8 3.5E-19 1.2E-23 168.0 9.9 121 178-302 22-154 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.8 3.2E-19 1.1E-23 166.9 8.1 123 178-305 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 4.6E-19 1.6E-23 167.2 6.2 122 178-304 7-147 (166)
9 2lsn_A Reverse transcriptase; 99.7 8.4E-18 2.9E-22 158.6 7.9 125 177-302 5-161 (165)
10 3hst_B Protein RV2228C/MT2287; 99.7 2.4E-17 8.2E-22 149.6 9.7 118 179-301 3-130 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.7 2.7E-17 9.2E-22 148.6 9.0 119 178-301 2-134 (140)
12 2zd1_A Reverse transcriptase/r 99.7 9.6E-17 3.3E-21 178.0 10.2 116 177-301 437-557 (557)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 1.4E-16 4.7E-21 176.7 11.4 116 177-301 434-554 (555)
14 2ehg_A Ribonuclease HI; RNAse 99.6 2.3E-16 7.9E-21 145.3 8.7 117 180-301 2-131 (149)
15 1zbf_A Ribonuclease H-related 99.0 1.1E-10 3.8E-15 107.2 4.3 117 176-296 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.7 3.7E-08 1.3E-12 89.3 7.8 75 177-253 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 65.3 1.8 6.2E-05 46.0 1.1 73 177-253 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 33.9 93 0.0032 32.5 8.1 69 176-247 321-400 (428)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.84 E-value=5.5e-21 Score=177.79 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=100.3
Q ss_pred cCCcEEEEecCCCCCCc-----ceEEEEeCCe---eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHH
Q psy18013 176 YANHTICYTDGSKSPDV-----TGCAFSIGDM---VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSAL 247 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~~-----vG~gvv~~~~---~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal 247 (563)
..+.+.||||||+..++ .|+|+++.+. ..+..+...++++.||+.|+..||+.+.+.+..+|.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 45789999999987542 7899887542 244556557899999999999999999987789999999999999
Q ss_pred HHHhccC---------CCC--hh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCcc
Q psy18013 248 AALANVK---------FSN--PL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVS 304 (563)
Q Consensus 248 ~aL~~~~---------~~s--~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~ 304 (563)
+.|..+. ..+ +. ...+++.+..+.. +..|.|.|||||+|++|||.||+|||+| +.
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a-~~ 150 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREG-AK 150 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHH-HH
Confidence 9998731 111 11 2455666666555 4679999999999999999999999999 44
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.82 E-value=2.5e-20 Score=173.18 Aligned_cols=123 Identities=23% Similarity=0.302 Sum_probs=93.1
Q ss_pred ccCCcEEEEecCCCCCC--cceEEEEeCCe-eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 175 KYANHTICYTDGSKSPD--VTGCAFSIGDM-VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 175 ~~~~~i~IyTDGS~~~~--~vG~gvv~~~~-~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
+.++.+.||||||+..+ ..|+|++..+. .....+ ..++++.||+.|+..||+.+ ..++.|+|||+++++.|.
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 35678999999998764 37888776542 223334 36899999999999999985 489999999999999998
Q ss_pred ccC-----------CCChh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCC
Q psy18013 252 NVK-----------FSNPL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPN 302 (563)
Q Consensus 252 ~~~-----------~~s~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa 302 (563)
.+. ...++ -+++++.+..+..++..|.|.|||||+|++|||.||+||++|+
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~ 145 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 145 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTT
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHH
Confidence 751 11111 1345554444444678999999999999999999999999993
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.81 E-value=1.6e-21 Score=180.44 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=97.2
Q ss_pred cCCcEEEEecCCCCCCcceEEEEeC--Ce--eeee-ec--CC--CCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHH
Q psy18013 176 YANHTICYTDGSKSPDVTGCAFSIG--DM--VRST-LL--NP--INSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSA 246 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~~vG~gvv~~--~~--~~~~-~L--~~--~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sa 246 (563)
+++.+.||||||+..+..|+|+++. +. ..+. .. +. .++++.||+.|+..||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 4578999999999987799997763 22 2233 22 22 368999999999999999877656 99999999988
Q ss_pred HHHHhccCCCC-hhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCccCC
Q psy18013 247 LAALANVKFSN-PLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSAP 306 (563)
Q Consensus 247 l~aL~~~~~~s-~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~~p 306 (563)
...+.+.+..+ +....+.+.++.|.. .|.|.|||||+|++|||.||+|||+| +..+
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a-~~~~ 138 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSA-LGIR 138 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHH-HTCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHH-Hhcc
Confidence 88777755443 344555555555543 79999999999999999999999999 5543
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.81 E-value=1.2e-20 Score=173.77 Aligned_cols=121 Identities=22% Similarity=0.142 Sum_probs=90.3
Q ss_pred CcEEEEecCCCCCC--cceEEEEeCC--e--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIGD--M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~~--~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
..+.||||||+..+ ..|+|+++.. . ..+..++ .++++.||+.|++.||+.+.+ ..+|.|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 46899999998765 3788877542 2 2223333 578999999999999999976 589999999999999998
Q ss_pred ccC------------CCCh-hHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCC
Q psy18013 252 NVK------------FSNP-LVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPN 302 (563)
Q Consensus 252 ~~~------------~~s~-~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa 302 (563)
..+ ...+ .-+.+++.+..+... ..|.|.|||||+|++|||.||+|||+|+
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~ 142 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAI 142 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHH
Confidence 721 0111 124455555555443 4799999999999999999999999993
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.78 E-value=1.6e-19 Score=168.25 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=93.8
Q ss_pred CcEEEEecCCCCCC--cceEEEEeC--Ce--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIG--DM--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~--~~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
..+.||||||+..+ ..|+|+++. +. ..+..+ ...+++.||+.|+..||+.+.+ ..++.|+|||+++++.|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 35899999999864 378887764 22 222233 3578999999999999999876 379999999999999998
Q ss_pred cc--------C-CC--Chh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCccCC
Q psy18013 252 NV--------K-FS--NPL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSAP 306 (563)
Q Consensus 252 ~~--------~-~~--s~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~~p 306 (563)
.+ . .. .++ -..+++.+..+.+ ...|.|.|||||+|++|||.||+|||+| +..|
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a-~~~~ 144 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAA-AMNP 144 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHH-HHSC
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHH-Hhcc
Confidence 72 1 11 122 1455665666655 3689999999999999999999999999 5543
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.78 E-value=3.5e-19 Score=168.04 Aligned_cols=121 Identities=25% Similarity=0.287 Sum_probs=89.2
Q ss_pred CcEEEEecCCCCC--CcceEEEEeC--Cee-eeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhc
Q psy18013 178 NHTICYTDGSKSP--DVTGCAFSIG--DMV-RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN 252 (563)
Q Consensus 178 ~~i~IyTDGS~~~--~~vG~gvv~~--~~~-~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~ 252 (563)
..+.||||||+.. +..|+|+++. +.. ....+...++++.||+.|+..||+.+ ...++.|+|||+++++.+-.
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHS
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhc
Confidence 3699999999974 4477776542 222 22245567899999999999999998 36899999999999999832
Q ss_pred cCCCChh-HHHHHHHH-HHHhhcCCeEEEEeecCccC-----CcCChHHHHHhcCCC
Q psy18013 253 VKFSNPL-VTKVFSTW-RYLKLCNKEVTFMWCPSHCG-----IRGNEIVDDAAKNPN 302 (563)
Q Consensus 253 ~~~~s~~-~~~I~~~i-~~L~~~~~~V~~~WVPgH~g-----i~GNE~AD~lAK~Aa 302 (563)
.....++ -.+++..+ ..+. .+..|.|.|||||+| ++|||.||+|||+|+
T Consensus 99 ~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa 154 (165)
T 3p1g_A 99 HSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAA 154 (165)
T ss_dssp CCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHH
Confidence 2222222 13333333 2333 578999999999999 999999999999993
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.77 E-value=3.2e-19 Score=166.86 Aligned_cols=123 Identities=21% Similarity=0.286 Sum_probs=92.8
Q ss_pred CcEEEEecCCCCCC--cceEEEEeC--Ce--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIG--DM--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~--~~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
..+.||||||+..+ ..|+|+++. +. ..+..++ .++++.||+.|+..||+.+.+ ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999999854 378887763 22 1222333 478999999999999999865 389999999999999998
Q ss_pred c--------cCC-C--Chh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCccC
Q psy18013 252 N--------VKF-S--NPL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSA 305 (563)
Q Consensus 252 ~--------~~~-~--s~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~~ 305 (563)
. ... . .++ -..+++.+..+.+. ..|.|.|||||+|++|||.||+|||+| +..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a-~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVKGHAGHAENERCDQLARAA-AEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECCTTCCCHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEccCCCCchhHHHHHHHHHHH-HHh
Confidence 8 221 1 111 23555555555543 689999999999999999999999999 543
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.75 E-value=4.6e-19 Score=167.19 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=92.6
Q ss_pred CcEEEEecCCCCCC--cceEEEEeCC--e--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIGD--M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~~--~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~ 251 (563)
..+.||||||+..+ ..|+|+++.. . ..+... ...+++.||+.|++.||+.+.+. .+|.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 56899999999864 3788987642 1 122222 35789999999999999988653 58999999999999998
Q ss_pred c----------cCCCC--hh-HHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCCCcc
Q psy18013 252 N----------VKFSN--PL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVS 304 (563)
Q Consensus 252 ~----------~~~~s--~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~Aa~~ 304 (563)
. +...+ ++ -..+++.+..+... ..|.|.|||||+|++|||.||+|||+| +.
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a-~~ 147 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQ-AQ 147 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHH-HT
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHH-HH
Confidence 8 22111 12 23556656566553 589999999999999999999999999 44
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.71 E-value=8.4e-18 Score=158.57 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=89.8
Q ss_pred CCcEEEEecCCCCCC--c-----ceEEEEeC--Ce----eeeeec-CCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEec
Q psy18013 177 ANHTICYTDGSKSPD--V-----TGCAFSIG--DM----VRSTLL-NPINSIFSAELIAIFLCLEAILENPSDQFLIVSD 242 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~--~-----vG~gvv~~--~~----~~~~~L-~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tD 242 (563)
...++||||||+..+ . .|+|+++. +. ...+.. ....+.+.||+.|+..||+.++..+ .+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 356899999998754 2 78998753 11 222332 2456778899999999998877643 57999999
Q ss_pred cHHHHHHHhccC---------C--CChh-HHHHHHHHHHHhhcCCeEEEEeecCccCC------cCChHHHHHhcCCC
Q psy18013 243 SRSALAALANVK---------F--SNPL-VTKVFSTWRYLKLCNKEVTFMWCPSHCGI------RGNEIVDDAAKNPN 302 (563)
Q Consensus 243 S~sal~aL~~~~---------~--~s~~-~~~I~~~i~~L~~~~~~V~~~WVPgH~gi------~GNE~AD~lAK~Aa 302 (563)
|+++++.+..+. . ..++ -.++++.+..+......|.|.|||||+|+ +|||.||+||++||
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 999999997521 1 1122 24555555555555568999999999995 58999999999984
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2.4e-17 Score=149.65 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=96.4
Q ss_pred cEEEEecCCCCCC--cceEEEEeCCe-------eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHH
Q psy18013 179 HTICYTDGSKSPD--VTGCAFSIGDM-------VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAA 249 (563)
Q Consensus 179 ~i~IyTDGS~~~~--~vG~gvv~~~~-------~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~a 249 (563)
.+.||||||...+ ..|+|+++.+. ..+..++ .++++.||+.|++.||+.+.+.+..++.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5899999998864 47888776321 1222333 678999999999999999998778899999999999999
Q ss_pred HhccCC-CChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 250 LANVKF-SNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 250 L~~~~~-~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
+.+.+. .++....+++.+..|..+...|.|.|||+ ++||.||+|||+|
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a 130 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDA 130 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHH
Confidence 998653 45556667777778877789999999995 8999999999998
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.70 E-value=2.7e-17 Score=148.61 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=93.8
Q ss_pred CcEEEEecCCCCCC--cceEEEEeCC----e--eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCC----eEEEEeccHH
Q psy18013 178 NHTICYTDGSKSPD--VTGCAFSIGD----M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSD----QFLIVSDSRS 245 (563)
Q Consensus 178 ~~i~IyTDGS~~~~--~vG~gvv~~~----~--~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~----~i~I~tDS~s 245 (563)
..+.||||||...+ ..|+|+++.+ . ..+..++ .++++.||+.|+..||+.+.+.+.. ++.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999998764 4888877643 1 1222333 4789999999999999999886666 9999999999
Q ss_pred HHHHHhccCC-CChhHHHHHHHHHHH-hhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 246 ALAALANVKF-SNPLVTKVFSTWRYL-KLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 246 al~aL~~~~~-~s~~~~~I~~~i~~L-~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
+++.+.+.+. .+.-...+++.+..+ .++...|.|.|||+ ++||.||+|||+|
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a 134 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEA 134 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHH
Confidence 9999998764 444445566666666 66667899999994 8999999999998
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.66 E-value=9.6e-17 Score=178.02 Aligned_cols=116 Identities=26% Similarity=0.370 Sum_probs=88.6
Q ss_pred CCcEEEEecCCCCCC--cceEEEEeCCe-eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhcc
Q psy18013 177 ANHTICYTDGSKSPD--VTGCAFSIGDM-VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~--~vG~gvv~~~~-~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~~ 253 (563)
.+.+.||||||+..+ ..|+|++..+. ...... ..+|++.||+.|++.||+.+ ..++.|+|||++|++.+..+
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 456999999998754 36788776532 222333 35799999999999999998 57999999999999999987
Q ss_pred CCC--ChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 254 KFS--NPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 254 ~~~--s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
... .++.+++.+ .+.+ ...|.|.|||||+|++|||.||+|||+|
T Consensus 512 ~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 654 245554443 3333 4689999999999999999999999986
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.66 E-value=1.4e-16 Score=176.68 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCCCCc--ceEEEEeCC-eeeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhcc
Q psy18013 177 ANHTICYTDGSKSPDV--TGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~~--vG~gvv~~~-~~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL~~~ 253 (563)
++.+.||||||+..++ .|+|++... ...+..+. .++++.||+.|+..||+. ...++.|+|||+++++.+.++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~-~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccCC-CCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4679999999988643 688877643 22233333 578999999999999998 468999999999999999986
Q ss_pred CCC--ChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 254 KFS--NPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 254 ~~~--s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
... .++.+++.+ +...+..|.|.|||||+|++|||.||+|||+|
T Consensus 509 ~~~~~~~l~~~~~~----~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 509 PTESESKIVNQIIE----EMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp CSEESCHHHHHHHH----HHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred cccccHHHHHHHHH----HhccCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 532 345554443 32336789999999999999999999999998
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.64 E-value=2.3e-16 Score=145.29 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=90.1
Q ss_pred EEEEecCCCC-C--CcceE-EEEeCC--e-ee--eeecC---CCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHH
Q psy18013 180 TICYTDGSKS-P--DVTGC-AFSIGD--M-VR--STLLN---PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSAL 247 (563)
Q Consensus 180 i~IyTDGS~~-~--~~vG~-gvv~~~--~-~~--~~~L~---~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal 247 (563)
+.||||||.. . +..|+ |+++.+ . .. +..++ ...+++.||+.|+..||+.+.+.+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999987 2 45785 866532 1 11 12233 36889999999999999999987778999999999999
Q ss_pred HHHhccCC-CChhHHHHHHHHHHHhhcCCeEEEEeecCccCCcCChHHHHHhcCC
Q psy18013 248 AALANVKF-SNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNP 301 (563)
Q Consensus 248 ~aL~~~~~-~s~~~~~I~~~i~~L~~~~~~V~~~WVPgH~gi~GNE~AD~lAK~A 301 (563)
+.+.+++. .++....+++.+..+.++. .|.|.|||+ ++|+.||+|||+|
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a 131 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVA 131 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHH
Confidence 99999754 3344556666666555544 499999998 5999999999999
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.03 E-value=1.1e-10 Score=107.22 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=83.5
Q ss_pred cCCcEEEEecCCCCCC--cceEEEEeCCe--e--eeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHH
Q psy18013 176 YANHTICYTDGSKSPD--VTGCAFSIGDM--V--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAA 249 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~--~vG~gvv~~~~--~--~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~a 249 (563)
.+..+.||||||+..+ ..|+|+++... . .+..++ ..|++.||+.|++.||+.+.+... ++.|+|||+.+++.
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHH
Confidence 3467889999998754 47899887521 1 122233 478999999999999999998666 99999999999999
Q ss_pred HhccCCCC-----hhHHHHHHHHH----HHhhcCCeEEEEeecCccCCcCChHHHH
Q psy18013 250 LANVKFSN-----PLVTKVFSTWR----YLKLCNKEVTFMWCPSHCGIRGNEIVDD 296 (563)
Q Consensus 250 L~~~~~~s-----~~~~~I~~~i~----~L~~~~~~V~~~WVPgH~gi~GNE~AD~ 296 (563)
+.+..... ..-.++++.+. -++. ..++...|.-|++.-||..||.
T Consensus 86 ~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 86 VKDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HHcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 98876211 12234444433 3433 4456666777898999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.67 E-value=3.7e-08 Score=89.34 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCCCC--cceEEEEeCC-e---eeeeecCCCCcchhHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHH
Q psy18013 177 ANHTICYTDGSKSPD--VTGCAFSIGD-M---VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAAL 250 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~--~vG~gvv~~~-~---~~~~~L~~~~sv~~AEL~AI~~AL~~a~~~~~~~i~I~tDS~sal~aL 250 (563)
+....||||||+..+ ..|+|+|+.. . ..+..++ .+|++.||+.|++.||+.+.+.+.. +.|+|||+++++.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 456789999998764 3788544432 1 2222333 5799999999999999999885444 89999999999999
Q ss_pred hcc
Q psy18013 251 ANV 253 (563)
Q Consensus 251 ~~~ 253 (563)
.+.
T Consensus 81 ~~~ 83 (134)
T 4htu_A 81 KDK 83 (134)
T ss_dssp HHT
T ss_pred HcC
Confidence 874
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=65.27 E-value=1.8 Score=46.02 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCcceEEEEeCC----e----eeeeecC---CCCcchhHHHHHHHHHHHHHHc-CCCCeEEEEeccH
Q psy18013 177 ANHTICYTDGSKSPDVTGCAFSIGD----M----VRSTLLN---PINSIFSAELIAIFLCLEAILE-NPSDQFLIVSDSR 244 (563)
Q Consensus 177 ~~~i~IyTDGS~~~~~vG~gvv~~~----~----~~~~~L~---~~~sv~~AEL~AI~~AL~~a~~-~~~~~i~I~tDS~ 244 (563)
...+.+|||+|.. ++|+ ++... . ..+.++. ..-+++..|+.||..|++.... ....+++|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3457899999843 3332 33221 0 1222332 2456788999999999998865 3567899999996
Q ss_pred HHHHHHhcc
Q psy18013 245 SALAALANV 253 (563)
Q Consensus 245 sal~aL~~~ 253 (563)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66555554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=33.91 E-value=93 Score=32.52 Aligned_cols=69 Identities=4% Similarity=-0.080 Sum_probs=40.1
Q ss_pred cCCcEEEEecCCCCCCcceEEEEeCC----eeeeeecCC--CCcchhHHHHH-HHHHHHHHHc----CCCCeEEEEeccH
Q psy18013 176 YANHTICYTDGSKSPDVTGCAFSIGD----MVRSTLLNP--INSIFSAELIA-IFLCLEAILE----NPSDQFLIVSDSR 244 (563)
Q Consensus 176 ~~~~i~IyTDGS~~~~~vG~gvv~~~----~~~~~~L~~--~~sv~~AEL~A-I~~AL~~a~~----~~~~~i~I~tDS~ 244 (563)
+...+.++||+|... ++|.+..+ ...+.++.. .-..+.-|+.| |..||+...- .....++++||.+
T Consensus 321 ~~~~~~l~~das~~g---~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 321 PSKDLIAEIQKQGQG---QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp TTSCCEEEEEEEETT---EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCCCEEEEEecCCCC---cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 345689999999432 22333322 122333322 23345566667 9999986543 3456778899997
Q ss_pred HHH
Q psy18013 245 SAL 247 (563)
Q Consensus 245 sal 247 (563)
...
T Consensus 398 ~~~ 400 (428)
T 2zd1_B 398 WET 400 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
Done!