RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18013
(563 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 72/373 (19%), Positives = 122/373 (32%), Gaps = 102/373 (27%)
Query: 197 FSI--GDMVRSTLLNPINSIFSAE-LIAIFLCLEAILENPSDQFLIVSDSRSALAALAN- 252
++ G + LL P S F A L F IL P++ F D + A L
Sbjct: 9 LTLSHGS-LEHVLLVPTASFFIASQLQEQFN---KILPEPTEGF-AADDEPTTPAELVGK 63
Query: 253 -VKFSNPLV--TKVFSTWRYLKLCNK--EVTFMWCPSHCGIRGNEIVDDAAKNPNVSAPL 307
+ + + LV +KV + L LC E ++ GN+I AAK +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--------EGNDIHALAAKLLQENDTT 115
Query: 308 KLCTPEDLKPFIASIIQSEWQIQWNNVPNTNKLKSIRPNIKQWNTSTQDRRTKEVILTRM 367
+ T E +K +I + I + P K S + +
Sbjct: 116 LVKTKELIKNYITARIMA-------KRPFDKKSNSA-------------------LFRAV 149
Query: 368 RIGHTRLTHNHLFTKGGQTGNRGSLGNREPILREPQAYFEGTNCYTDGSKSPDVTGCAFS 427
G+ +L +F GGQ GN + E + ++ T Y
Sbjct: 150 GEGNAQLVA--IF--GGQ-------GNTDDYFEELRDLYQ-T--YHV------------L 183
Query: 428 IGDMVRST--LLNPISSIFSAELIAIF---LCLEAILEN----PSDQFLI---VSMKLIQ 475
+GD+++ + L+ + + + +F L + LEN P +L+ +S LI
Sbjct: 184 VGDLIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 476 --SVIRYQNLSANGSVN----LKKSTGKTNKQQ--------QRSQEMKPFIKGLCFVLNF 521
+ Y + G T Q + + F + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 522 PLYIGSRS-EVLP 533
+IG R E P
Sbjct: 303 LFFIGVRCYEAYP 315
Score = 58.1 bits (140), Expect = 6e-09
Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 93/296 (31%)
Query: 126 ESSEVAPYVRFVPPWSNCAPPVDQCLGEEKKSDVAPVV----------FQQKFSEAINTK 175
++S+ A + V W+ D + + +V F + + I
Sbjct: 1637 KTSKAA---QDV--WNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 176 YANHTI-CYTDGSK---------SPDVTGCAFSIGDMVRSTLLN------PINSIFSAEL 219
Y+ DG + T F + LL+ P ++ E
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SE---KGLLSATQFTQP--ALTLME- 1740
Query: 220 IAIFLCLEAILENPSDQFLIVSDSR---------SALAALANV-KFSNPLVTKVFSTWRY 269
A F L++ + LI +D+ +ALA+LA+V + LV VF R
Sbjct: 1741 KAAFEDLKS-------KGLIPADATFAGHSLGEYAALASLADVMSIES-LVEVVFY--RG 1790
Query: 270 LKLCNKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSAPLKLCTPEDLKPFIASII-QSEWQ 328
V P G A NP + E L+ + + ++ W
Sbjct: 1791 -MTMQVAV-----PR--DELGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 329 IQW-N-NVPN---------------TNKLKSIR-PNIK--QWNTSTQDRRTKEVIL 364
++ N NV N TN L I+ I + S + +
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 7e-09
Identities = 67/377 (17%), Positives = 114/377 (30%), Gaps = 94/377 (24%)
Query: 18 PPIQEGIDAKD------SVLNK------LNAVHH-AGIRIATGALRSSP--VVSLYVDSG 62
+ D KD S+L+K + + +G L S +V +V+
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 63 VPPLTLRRSKLMLNY---VAKISASPFNPAQKLLYHQDMSGIIFTVNKP-KPLYI-RFRE 117
L +NY ++ I P+ + + ++ N+ + R +
Sbjct: 87 ----------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 118 VANFNNVLESSEVAPYVRFVPPWSNCAPPVDQCLGEEKKSDVAPVVFQQKFSEAINTK-- 175
L A V +D LG K V K ++ K
Sbjct: 137 YLKLRQALLELRPAKNV-----------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 176 YANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAEL---IAIFLCLEAILEN 232
+ N C SP+ ++ +M+ LL I+ +++ I L + +I
Sbjct: 186 WLNLKNC-----NSPE------TVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 233 PSDQFLIVSDSRSALAALANVKFSNPLVTKVFS-------TWRYLKLCNKEVTFMWCPSH 285
L + L L NV N F+ T R K+VT +
Sbjct: 234 LRR-LLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAAT 285
Query: 286 CGIRGNEIVDDAAKNPNVSAPLKL------CTPEDLK-------PFIASII---QSEWQI 329
+ +D + L C P+DL P SII +
Sbjct: 286 ---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 330 QWNNVP--NTNKLKSIR 344
W+N N +KL +I
Sbjct: 343 TWDNWKHVNCDKLTTII 359
Score = 33.7 bits (76), Expect = 0.19
Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 59/213 (27%)
Query: 376 HNHLFTKGGQTGNRGSLGNREPILREPQAYFEGTNCYTDGSKSPDVTGCAFSIGDMVRST 435
H+H+ + G+ ++ + A+ + +C DV DM +S
Sbjct: 4 HHHMDFETGEH----QYQYKDILSVFEDAFVDNFDCK-------DVQ-------DMPKSI 45
Query: 436 LLNP-ISSIFSA-----ELIAIFLCLEAILENPSDQFLIVSMKL----IQSVIRYQNLSA 485
L I I + + +F L + E +F+ +++ + S I+ +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 486 NGSVNLKKSTGKTNKQQ-----------QRSQEMKPFIKGLC------FVLNFPLY--IG 526
S+ + + ++ R Q + L VL + +G
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLG 160
Query: 527 SRSEVLPANHLRVWAKGTLKRNCASKFRFLMFW 559
S + + + K C K F +FW
Sbjct: 161 SGKTWVALDVCL-----SYKVQC--KMDFKIFW 186
Score = 32.9 bits (74), Expect = 0.31
Identities = 36/265 (13%), Positives = 75/265 (28%), Gaps = 90/265 (33%)
Query: 20 IQEGIDA----KDSVLNKLNAVHHAGIRIATGALRSSPVVSLYV-------DSGVPPLTL 68
I++G+ K +KL + I + L + ++ + +P + L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 69 RR---------SKLMLNYVAKISASPFNPAQKLLY-HQDMSGIIFTVNKPKPLYIRFREV 118
+++N + K S P + + +Y+ +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------------IYLELKVK 438
Query: 119 ANFNNVLESSEVAPY--VRFVPPWSNCAPPVDQ-----------CLGEEKKSDVAPVVF- 164
L S V Y + P +DQ + ++ + +VF
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 165 -----QQKF----------SEAINT-----KYANHTICYTDG--------------SKSP 190
+QK +NT Y + IC D
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEE 557
Query: 191 DVTGCAFSIGDMVRSTLLNPINSIF 215
++ ++ D++R L+ +IF
Sbjct: 558 NLICSKYT--DLLRIALMAEDEAIF 580
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 51.2 bits (123), Expect = 5e-08
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 18/129 (13%)
Query: 183 YTDGSKSPDVTGCAFSI-----------GDMVRSTLLNPINSIFSAELIAIFLCLEAILE 231
YTDGS A++ + E+ A ++ +
Sbjct: 10 YTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPA--AATMRNVAGEIAAALYAVKKASQ 67
Query: 232 NPSDQFLIVSDSRSALAALANV-KFSNPLVTKVFSTWRYLKLCNKEVTFMWCPSHCGIRG 290
+ I+ D K N + + +F +H G
Sbjct: 68 LGV-KIRILHDYAGIAFWATGEWKAKNEFTQAY---AKLMNQYRGIYSFEKVKAHSGNEF 123
Query: 291 NEIVDDAAK 299
N+ VD AK
Sbjct: 124 NDYVDMKAK 132
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 50.2 bits (120), Expect = 2e-07
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 177 ANHTICYTDGSKS----PDVTGCAFSIGDMVR-STLLNPINSIFSAELIAIFLCLEAILE 231
A++T YTDGS G A + V + L S AELIA+ +A+
Sbjct: 22 ADYTW-YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIAL---TQALKM 77
Query: 232 NPSDQFLIVSDSRSALAALANVKFSNPLVTKVFSTWRYL--KLCNKE-VTFMWCPSHCG- 287
+ + +DSR A A K + L L + ++ + CP H
Sbjct: 78 AEGKKLNVYTDSRYAFATAHVHSEGRE--IKNKNEILALLKALFLPKRLSIIHCPGHQKG 135
Query: 288 ----IRGNEIVDDAAK 299
RGN + D AA+
Sbjct: 136 NSAEARGNRMADQAAR 151
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 43.2 bits (102), Expect = 2e-04
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 217 AELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCN 274
EL AI+L L+ + + IV+DS+ AL + K + LV ++ +L
Sbjct: 479 TELQAIYLALQ----DSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIE-----QLIK 529
Query: 275 KEVTFM-WCPSHCGIRGNEIVD 295
KE ++ W P+H GI GNE VD
Sbjct: 530 KEKVYLAWVPAHKGIGGNEQVD 551
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 217 AELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN--VKFSNPLVTKVFSTWRYLKLCN 274
AEL A + L + + I+ DS+ + +A+ + + +V ++ ++
Sbjct: 476 AELEAFAMALT----DSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIE-----EMIK 526
Query: 275 KEVTFM-WCPSHCGIRGNEIVD 295
KE ++ W P+H GI GN+ VD
Sbjct: 527 KEAIYVAWVPAHKGIGGNQEVD 548
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 37.2 bits (87), Expect = 0.004
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 267 WRYL-KLCNK-EVTFMWCPSHCGIRGNEIVD----DAAKNPN 302
+ L +L ++ +M P H G GNE D + AK
Sbjct: 112 FVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSE 153
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 34.8 bits (81), Expect = 0.024
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 267 W-RYLKLCNK-EVTFMWCPSHCGIRGNEIVD----DAAKNPN 302
W R + ++ + W H G NE D AA NP
Sbjct: 104 WQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPT 145
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 34.1 bits (79), Expect = 0.039
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 271 KLCNKE-VTFMWCPSHCGIRGNEIVDDAAKN 300
+L KE V W P+H GI GNE VD
Sbjct: 113 QLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 33.6 bits (78), Expect = 0.062
Identities = 12/42 (28%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 267 W-RYLKLCNK-EVTFMWCPSHCGIRGNEIVD----DAAKNPN 302
W LKL VTF H N D A K +
Sbjct: 105 WQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKENS 146
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.20
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 21/61 (34%)
Query: 274 NKEVTFMWCPSHCGIRGNEIVDDAAKNPNVSAPLKLCTP-----EDLKPFIASIIQ--SE 326
N + + CP C + +IV+ ++ V C D ++ SE
Sbjct: 17 NLNIV-LTCPE-CKVYPPKIVERFSEGDVV------CALCGLVLSD------KLVDTRSE 62
Query: 327 W 327
W
Sbjct: 63 W 63
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 31.7 bits (73), Expect = 0.26
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 267 W-RYLKLCNK-EVTFMWCPSHCGIRGNEIVDDAAKN 300
W R K ++ + W H G NE D A+
Sbjct: 106 WKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 31.4 bits (72), Expect = 0.40
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 267 W-RYLKLCNK-EVTFMWCPSHCGIRGNEIVDDAAK 299
W L V F + H G NE VD A+
Sbjct: 109 WEALLLAMAPHRVRFHFVKGHTGHPENERVDREAR 143
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.69
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 49 LRSSPVVSLYVDSGVPPLTLRRS 71
L++S + LY D P L ++ +
Sbjct: 25 LQAS--LKLYADDSAPALAIKAT 45
Score = 29.1 bits (64), Expect = 2.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 226 LEAILENPSDQFLIVSDSRSALAALANVK 254
L+A L+ L DS ALA A ++
Sbjct: 25 LQASLK------LYADDSAPALAIKATME 47
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N-
acetylgalactosamine-specific component...; manxb PTS;
1.56A {Thermoanaerobacter tengcongensis}
Length = 187
Score = 28.2 bits (63), Expect = 5.3
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 277 VTFMWCPSHCGIRGNEIVDD-AAKNPNVSAPLKLCTPEDLKPFIASI 322
V W I+DD A + + + P +K + +
Sbjct: 38 VMTRWMK-GFPEASIVIIDDELAVDEFMKNIYTMAAPPGVKVKVFGV 83
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 5.3
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 100 GIIFTVNKPKPLYIRFREVANFNNVLESSEVAPYVRFVPPW--SNCAPPVDQCL 151
G+ VN N + + ++V P +R V S+ + L
Sbjct: 117 GMAIQVNYSS------EVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFL 164
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core,
flanking helices, right handed beta-alpha-B crossover,
transferase; 1.75A {Klebsiella pneumoniae} SCOP:
c.38.1.1
Length = 164
Score = 27.8 bits (62), Expect = 6.1
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 277 VTFMWCPSHCGIRGNEIVDD-AAKNPNVSAPLKLCTPEDLKPFIASI 322
VT +W + I +D + L+ P +K + S+
Sbjct: 17 VTTVWSK-VANAQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSL 62
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 6.2
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 285 HCGIRGNEIVDDAAKNPNVSAPLKLCT---PEDLKPFIAS 321
H GIR I + N + EDL+PF AS
Sbjct: 901 HSGIR--LIEPELFNGYNPEKKEMIQEVIVEEDLEPFEAS 938
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A
{Bacillus subtilis} SCOP: c.38.1.1
Length = 163
Score = 27.8 bits (62), Expect = 6.9
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 277 VTFMWCPSHCGIRGNEIVDD-AAKNPNVSAPLKLCTPEDLKPFIASI 322
+ W +V D A++ + P ++K S+
Sbjct: 18 ILTRWIK-VHAADRIIVVSDDIAQDEMRKTLILSVAPSNVKASAVSV 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 28.4 bits (63), Expect = 7.4
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 275 KEVTFM-WCPSHCGIRGNEIVDDAAKNP-NVSAPLKLCTPEDLKPFIASIIQSE 326
KEV M +CG R NE+ A P L + P D+ +++SE
Sbjct: 243 KEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPSDMT---RDLLKSE 293
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,246,114
Number of extensions: 475295
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 26
Length of query: 563
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 464
Effective length of database: 3,937,614
Effective search space: 1827052896
Effective search space used: 1827052896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)