BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18014
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/303 (68%), Positives = 248/303 (81%), Gaps = 6/303 (1%)
Query: 21 NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
NPFQ+L+K+AVLQEAR FN+TP+NP+KC HILTKILYLINQGE LGT EAT+AFFAMTKL
Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76
Query: 81 FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
FQS D LRRM YL IKE+S IAEDVIIVTSSLTKDMTGKED YR A+RALC ITD+TM
Sbjct: 77 FQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM 136
Query: 141 IQAIERYMKQAIVDRNXXXXXXXXXXIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
+QAIERYMKQAIVD+ H+ K S D+VKRWVNE QEA +S+N+MVQYHA
Sbjct: 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196
Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
LGLLYH+RK+D+LAV+K+++K T+ +KSP+A CM+IR+ + +ED++ + +SP
Sbjct: 197 LGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------RDSP 250
Query: 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
LFD++E+CLR+K E VVYEAA AIVNL SA+ELAPAVSVLQLFCSSPK LR+AAVRT
Sbjct: 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRT 310
Query: 321 LNK 323
LNK
Sbjct: 311 LNK 313
>pdb|2LUL|A Chain A, Solution Nmr Structure Of Ph Domain Of Tyrosine-Protein
Kinase Tec From Homo Sapiens, Northeast Structural
Genomics Consortium (Nesg) Target Hr3504c
Length = 164
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 101 NIAEDVIIVTSSLTKDMTGK-EDLYRAAAI---RALCS---ITDTTMIQAIERYMKQAIV 153
N E + ++T S+ G+ E YR I + C D +I +Y Q +
Sbjct: 35 NYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVH 94
Query: 154 DRNXXXXXXXXXXIFHMTKHSPDLVKRWVNEVQEAL-NSENVMVQYH 199
D N IF + S DL WV +++E + N+ N+M++YH
Sbjct: 95 DANTLY-------IFAPSPQSRDL---WVKKLKEEIKNNNNIMIKYH 131
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/146 (17%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 68 QEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRA 126
++ + F + Q+ ++ L+++VYL + + D+ I+ +S KD L RA
Sbjct: 45 KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 104
Query: 127 AAIRALCSITDTTMIQAIERYMKQAIVDRNXXXXXXXXXXIFHMTKHSPDLVKR--WVNE 184
A+R + I + + + +++ + D + + + + +V+ +++
Sbjct: 105 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164
Query: 185 VQEALNSENVMVQYHALGLLYHIRKS 210
+++ + N MV +A+ L I +S
Sbjct: 165 LRDLIADSNPMVVANAVAALSEISES 190
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/146 (17%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 68 QEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRA 126
++ + F + Q+ ++ L+++VYL + + D+ I+ +S KD L RA
Sbjct: 45 KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 104
Query: 127 AAIRALCSITDTTMIQAIERYMKQAIVDRNXXXXXXXXXXIFHMTKHSPDLVKR--WVNE 184
A+R + I + + + +++ + D + + + + +V+ +++
Sbjct: 105 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164
Query: 185 VQEALNSENVMVQYHALGLLYHIRKS 210
+++ + N MV +A+ L I +S
Sbjct: 165 LRDLIADSNPMVVANAVAALSEISES 190
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 87 ILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIER 146
IL+ V + IA+ + +SL D + R + LC +TD+ ++ +E+
Sbjct: 40 ILQESVLNKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLTVPELCLLTDSFILTRLEQ 99
Query: 147 YMKQAIVDRN 156
Y K + +R
Sbjct: 100 YYKNKVNERG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,122,375
Number of Sequences: 62578
Number of extensions: 289575
Number of successful extensions: 670
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 10
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)