Query psy18014
Match_columns 323
No_of_seqs 109 out of 744
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:18:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 1.3E-55 2.9E-60 452.5 29.2 302 4-322 6-322 (746)
2 KOG1078|consensus 100.0 9.1E-51 2E-55 402.5 27.3 299 18-323 10-308 (865)
3 KOG1062|consensus 100.0 3.5E-48 7.5E-53 385.1 25.8 299 8-322 8-338 (866)
4 PF01602 Adaptin_N: Adaptin N 100.0 4.6E-45 9.9E-50 365.5 22.8 283 27-322 1-292 (526)
5 COG5240 SEC21 Vesicle coat com 100.0 5.1E-42 1.1E-46 330.8 25.7 299 18-323 10-329 (898)
6 KOG1061|consensus 100.0 2.6E-43 5.6E-48 350.9 17.2 284 21-322 4-304 (734)
7 KOG1060|consensus 100.0 6E-39 1.3E-43 318.1 25.4 280 31-322 36-346 (968)
8 COG5096 Vesicle coat complex, 100.0 2.1E-37 4.7E-42 313.4 24.3 265 44-320 32-307 (757)
9 KOG1058|consensus 100.0 1.6E-37 3.5E-42 306.7 16.4 261 41-322 31-305 (948)
10 KOG1077|consensus 100.0 3.6E-35 7.7E-40 288.4 24.7 282 26-321 28-353 (938)
11 KOG1059|consensus 100.0 1.2E-33 2.7E-38 278.5 20.2 287 21-323 31-325 (877)
12 PF01602 Adaptin_N: Adaptin N 98.9 6E-08 1.3E-12 97.3 18.7 262 50-322 56-329 (526)
13 PF12717 Cnd1: non-SMC mitotic 98.9 1.3E-07 2.9E-12 82.3 15.9 156 121-284 1-174 (178)
14 PRK09687 putative lyase; Provi 98.7 4.8E-06 1E-10 77.7 22.3 220 71-323 53-279 (280)
15 PRK09687 putative lyase; Provi 98.7 3.9E-06 8.5E-11 78.3 21.5 215 78-321 29-245 (280)
16 PRK13800 putative oxidoreducta 98.5 2E-05 4.4E-10 84.7 23.6 120 73-210 653-772 (897)
17 PRK13800 putative oxidoreducta 98.3 5.9E-05 1.3E-09 81.2 21.4 207 77-322 689-895 (897)
18 PF10508 Proteasom_PSMB: Prote 98.1 0.0017 3.7E-08 65.5 25.4 248 70-322 75-362 (503)
19 PF13646 HEAT_2: HEAT repeats; 98.1 1.8E-05 3.9E-10 59.9 8.5 83 111-203 2-86 (88)
20 PTZ00429 beta-adaptin; Provisi 98.1 0.0019 4.1E-08 67.9 25.9 256 50-309 82-417 (746)
21 PF12348 CLASP_N: CLASP N term 97.9 0.00023 5E-09 63.8 13.3 183 39-221 15-218 (228)
22 COG1413 FOG: HEAT repeat [Ener 97.8 0.0036 7.9E-08 59.4 19.9 110 73-196 44-153 (335)
23 PF10508 Proteasom_PSMB: Prote 97.7 0.0084 1.8E-07 60.6 21.2 241 78-322 44-315 (503)
24 PLN03200 cellulose synthase-in 97.5 0.017 3.8E-07 66.2 23.0 241 77-320 409-674 (2102)
25 KOG2171|consensus 97.5 0.095 2.1E-06 56.4 26.0 282 28-322 77-414 (1075)
26 PF12348 CLASP_N: CLASP N term 97.3 0.00089 1.9E-08 60.0 8.3 133 50-185 75-219 (228)
27 PF13646 HEAT_2: HEAT repeats; 97.3 0.0012 2.6E-08 49.7 7.2 82 77-167 4-87 (88)
28 cd00020 ARM Armadillo/beta-cat 97.3 0.0016 3.5E-08 51.2 8.2 98 110-207 9-118 (120)
29 PF12717 Cnd1: non-SMC mitotic 97.2 0.023 5E-07 49.3 16.0 57 156-212 1-57 (178)
30 KOG1078|consensus 97.2 0.014 3E-07 60.4 16.2 264 11-288 81-385 (865)
31 KOG0414|consensus 97.2 0.0036 7.8E-08 67.0 12.4 151 69-223 916-1081(1251)
32 PF04826 Arm_2: Armadillo-like 97.2 0.026 5.6E-07 52.0 16.4 190 119-315 24-251 (254)
33 KOG2171|consensus 97.1 0.43 9.4E-06 51.6 25.9 221 87-315 290-535 (1075)
34 cd00020 ARM Armadillo/beta-cat 96.9 0.017 3.7E-07 45.3 11.1 69 144-212 8-81 (120)
35 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.007 1.5E-07 47.4 8.4 67 137-203 21-91 (97)
36 PLN03200 cellulose synthase-in 96.8 0.45 9.8E-06 55.2 24.9 241 73-322 447-719 (2102)
37 COG5098 Chromosome condensatio 96.8 0.0093 2E-07 61.0 10.2 167 75-244 895-1075(1128)
38 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0087 1.9E-07 41.3 6.2 49 122-170 1-55 (55)
39 PF02985 HEAT: HEAT repeat; I 96.5 0.0039 8.4E-08 38.1 3.6 29 144-172 1-29 (31)
40 KOG1062|consensus 96.5 0.52 1.1E-05 49.3 20.7 222 46-288 218-450 (866)
41 KOG0166|consensus 96.5 0.6 1.3E-05 47.0 20.3 267 50-321 85-388 (514)
42 KOG1824|consensus 96.4 1.3 2.9E-05 47.3 22.8 246 62-322 765-1032(1233)
43 KOG0212|consensus 96.3 0.75 1.6E-05 46.5 19.9 258 59-321 72-360 (675)
44 KOG0166|consensus 96.3 1.2 2.5E-05 44.9 21.2 151 50-200 213-384 (514)
45 TIGR02270 conserved hypothetic 96.3 0.4 8.6E-06 47.3 17.8 29 259-289 239-267 (410)
46 PF10363 DUF2435: Protein of u 96.2 0.013 2.9E-07 45.4 5.9 74 111-184 6-85 (92)
47 KOG1058|consensus 95.8 0.14 3E-06 53.1 12.3 209 87-319 40-265 (948)
48 KOG1242|consensus 95.7 1.7 3.6E-05 44.3 19.6 231 50-287 195-442 (569)
49 KOG2956|consensus 95.7 0.26 5.7E-06 48.6 13.4 147 25-174 281-479 (516)
50 PF04826 Arm_2: Armadillo-like 95.6 0.82 1.8E-05 42.1 15.9 168 147-320 16-199 (254)
51 KOG1060|consensus 95.5 0.4 8.8E-06 50.1 14.4 163 117-288 44-208 (968)
52 COG5096 Vesicle coat complex, 95.4 0.52 1.1E-05 49.6 15.3 169 113-289 23-195 (757)
53 TIGR02270 conserved hypothetic 95.4 0.085 1.8E-06 52.0 9.1 90 71-170 116-205 (410)
54 PF12830 Nipped-B_C: Sister ch 95.2 0.11 2.4E-06 45.5 8.5 112 111-222 11-135 (187)
55 PF13513 HEAT_EZ: HEAT-like re 95.2 0.088 1.9E-06 36.1 6.3 49 157-205 1-53 (55)
56 KOG0212|consensus 95.2 0.39 8.5E-06 48.4 12.9 211 108-321 42-274 (675)
57 KOG1240|consensus 95.2 1.1 2.3E-05 49.1 16.8 191 44-242 476-722 (1431)
58 KOG1059|consensus 95.2 0.63 1.4E-05 48.2 14.6 211 109-321 145-360 (877)
59 KOG2023|consensus 95.1 2.7 5.8E-05 43.5 18.7 206 82-290 58-286 (885)
60 KOG0414|consensus 95.1 0.084 1.8E-06 57.0 8.7 91 118-208 933-1026(1251)
61 COG5240 SEC21 Vesicle coat com 95.1 2 4.3E-05 43.8 17.3 208 103-316 334-545 (898)
62 KOG4224|consensus 94.8 1.6 3.5E-05 42.2 15.4 270 37-318 174-485 (550)
63 PF12719 Cnd3: Nuclear condens 94.6 1.8 3.9E-05 40.6 15.5 100 108-207 27-141 (298)
64 KOG1824|consensus 94.6 1.4 3.1E-05 47.1 15.7 201 102-320 18-232 (1233)
65 KOG1242|consensus 94.3 0.49 1.1E-05 48.0 11.3 154 47-200 269-435 (569)
66 KOG2023|consensus 94.2 2.4 5.1E-05 43.9 15.7 154 70-223 126-305 (885)
67 KOG2025|consensus 93.9 1 2.3E-05 46.7 12.6 124 41-168 55-189 (892)
68 COG5098 Chromosome condensatio 93.5 0.98 2.1E-05 46.8 11.7 119 90-208 280-414 (1128)
69 PF05918 API5: Apoptosis inhib 93.5 2.3 5E-05 43.4 14.4 112 73-185 24-139 (556)
70 PF08713 DNA_alkylation: DNA a 93.4 0.13 2.8E-06 45.4 5.0 149 78-233 57-206 (213)
71 PF05804 KAP: Kinesin-associat 93.4 5 0.00011 42.3 17.1 222 72-308 290-544 (708)
72 PF08713 DNA_alkylation: DNA a 93.2 3.1 6.8E-05 36.4 13.5 72 113-184 125-196 (213)
73 KOG0213|consensus 93.0 14 0.00031 39.0 19.8 234 79-321 689-949 (1172)
74 smart00638 LPD_N Lipoprotein N 92.6 1.6 3.4E-05 44.8 12.1 93 110-204 448-540 (574)
75 KOG1020|consensus 92.6 1.8 3.9E-05 48.4 12.7 125 86-210 794-922 (1692)
76 KOG1248|consensus 92.3 21 0.00046 39.4 25.1 243 70-315 609-887 (1176)
77 COG1413 FOG: HEAT repeat [Ener 92.1 11 0.00023 35.5 19.9 127 70-211 72-211 (335)
78 PF12719 Cnd3: Nuclear condens 91.3 5.4 0.00012 37.3 13.3 68 142-209 26-93 (298)
79 KOG1243|consensus 91.1 0.42 9.1E-06 49.3 5.8 125 50-174 293-439 (690)
80 KOG2062|consensus 90.8 2.9 6.3E-05 43.7 11.4 127 86-222 499-632 (929)
81 KOG4224|consensus 90.7 2.9 6.4E-05 40.4 10.6 239 77-321 90-358 (550)
82 PF13251 DUF4042: Domain of un 90.5 8.2 0.00018 33.7 12.6 143 159-321 2-169 (182)
83 PF13251 DUF4042: Domain of un 90.1 2.5 5.4E-05 36.9 9.1 116 89-207 19-172 (182)
84 PF05804 KAP: Kinesin-associat 89.8 16 0.00034 38.7 16.2 203 110-322 292-516 (708)
85 COG5218 YCG1 Chromosome conden 89.8 3.9 8.5E-05 41.9 11.1 126 40-167 59-194 (885)
86 cd06561 AlkD_like A new struct 89.4 0.73 1.6E-05 40.0 5.3 76 146-222 108-183 (197)
87 KOG1943|consensus 89.3 11 0.00024 41.1 14.5 179 126-317 403-602 (1133)
88 KOG0567|consensus 89.2 19 0.0004 33.5 15.9 233 50-317 21-271 (289)
89 PF01347 Vitellogenin_N: Lipop 88.8 1.6 3.6E-05 44.9 8.2 92 110-204 492-584 (618)
90 KOG1240|consensus 88.5 10 0.00023 41.9 13.8 132 77-210 583-726 (1431)
91 KOG2160|consensus 88.4 11 0.00024 36.2 12.7 93 116-208 132-239 (342)
92 COG5064 SRP1 Karyopherin (impo 87.9 16 0.00036 35.2 13.3 143 36-179 206-363 (526)
93 KOG1949|consensus 87.9 6.9 0.00015 40.9 11.5 147 136-290 166-332 (1005)
94 KOG0946|consensus 87.8 15 0.00032 39.0 13.9 128 82-211 33-197 (970)
95 KOG0213|consensus 87.6 28 0.0006 37.0 15.7 196 10-207 366-583 (1172)
96 COG5064 SRP1 Karyopherin (impo 87.5 24 0.00051 34.1 14.1 203 110-317 159-389 (526)
97 KOG1820|consensus 87.5 25 0.00054 37.8 15.9 177 136-321 246-438 (815)
98 PF10363 DUF2435: Protein of u 87.2 9.6 0.00021 29.4 9.6 76 145-220 5-84 (92)
99 PF03224 V-ATPase_H_N: V-ATPas 87.2 6.8 0.00015 36.9 10.7 101 110-211 107-229 (312)
100 KOG1248|consensus 87.2 22 0.00047 39.3 15.3 163 50-214 676-861 (1176)
101 KOG1077|consensus 86.7 31 0.00068 36.3 15.4 82 128-209 313-398 (938)
102 PF02985 HEAT: HEAT repeat; I 85.4 0.58 1.3E-05 28.2 1.6 26 110-135 2-27 (31)
103 PF08506 Cse1: Cse1; InterPro 84.9 8.9 0.00019 37.3 10.4 58 110-167 307-370 (370)
104 PF12074 DUF3554: Domain of un 84.9 36 0.00079 32.3 15.9 70 120-189 35-112 (339)
105 KOG4500|consensus 84.5 19 0.00042 35.8 12.2 158 52-210 293-476 (604)
106 PF11935 DUF3453: Domain of un 84.5 9.1 0.0002 34.8 9.7 57 151-207 1-70 (239)
107 PF10274 ParcG: Parkin co-regu 84.4 2.9 6.3E-05 36.5 6.1 51 139-189 76-126 (183)
108 KOG2259|consensus 83.9 6.3 0.00014 40.8 9.0 104 110-214 375-480 (823)
109 KOG4653|consensus 83.1 33 0.00072 36.8 14.0 68 116-183 735-809 (982)
110 COG5181 HSH155 U2 snRNP splice 83.0 16 0.00034 37.9 11.2 162 50-212 543-720 (975)
111 KOG2062|consensus 82.0 56 0.0012 34.7 14.9 157 30-201 484-645 (929)
112 PF12765 Cohesin_HEAT: HEAT re 81.7 2.1 4.6E-05 28.0 3.2 24 142-165 17-40 (42)
113 COG5116 RPN2 26S proteasome re 81.6 13 0.00027 38.3 9.9 106 109-223 520-630 (926)
114 KOG0413|consensus 80.4 7.3 0.00016 42.2 8.2 132 122-277 945-1080(1529)
115 KOG1820|consensus 79.7 84 0.0018 33.9 15.9 200 21-222 240-457 (815)
116 cd06561 AlkD_like A new struct 79.2 40 0.00087 28.9 13.6 71 117-187 114-185 (197)
117 KOG1020|consensus 78.5 54 0.0012 37.4 14.2 76 142-217 815-892 (1692)
118 KOG2032|consensus 77.9 15 0.00033 36.8 9.1 98 112-209 262-371 (533)
119 cd00197 VHS_ENTH_ANTH VHS, ENT 77.9 13 0.00029 29.3 7.5 72 148-219 5-76 (115)
120 cd00256 VATPase_H VATPase_H, r 77.5 80 0.0017 31.4 17.5 26 297-322 396-421 (429)
121 PF00790 VHS: VHS domain; Int 77.2 40 0.00086 27.8 11.5 69 147-215 9-77 (140)
122 PF05918 API5: Apoptosis inhib 77.0 94 0.002 32.0 20.7 121 121-241 35-158 (556)
123 KOG2160|consensus 76.8 73 0.0016 30.7 13.8 100 148-248 129-243 (342)
124 cd03561 VHS VHS domain family; 76.6 27 0.00058 28.6 9.1 54 162-215 19-72 (133)
125 KOG2956|consensus 76.5 89 0.0019 31.4 14.6 152 129-288 311-476 (516)
126 COG5181 HSH155 U2 snRNP splice 76.3 1E+02 0.0023 32.2 15.0 203 63-277 721-935 (975)
127 KOG1241|consensus 76.0 1.1E+02 0.0025 32.5 20.4 240 44-288 230-532 (859)
128 COG5218 YCG1 Chromosome conden 75.8 23 0.0005 36.6 9.8 19 269-287 280-298 (885)
129 PF08167 RIX1: rRNA processing 75.3 37 0.0008 28.9 10.0 68 113-180 30-108 (165)
130 cd03569 VHS_Hrs_Vps27p VHS dom 75.0 47 0.001 27.6 10.3 53 163-215 24-76 (142)
131 KOG4500|consensus 75.0 95 0.0021 31.1 16.3 212 72-287 223-473 (604)
132 KOG1061|consensus 74.9 55 0.0012 34.6 12.6 121 123-244 330-452 (734)
133 KOG1517|consensus 74.3 30 0.00064 38.1 10.6 137 70-206 510-668 (1387)
134 KOG0567|consensus 74.3 40 0.00087 31.3 10.3 83 110-200 189-271 (289)
135 PF14664 RICTOR_N: Rapamycin-i 73.4 58 0.0013 31.7 11.9 117 77-195 30-162 (371)
136 KOG4535|consensus 73.0 11 0.00025 37.8 6.8 125 84-209 24-179 (728)
137 PF05004 IFRD: Interferon-rela 73.0 86 0.0019 29.6 16.2 166 45-210 57-261 (309)
138 KOG0168|consensus 72.8 63 0.0014 34.9 12.4 172 109-287 168-362 (1051)
139 KOG1949|consensus 72.5 31 0.00068 36.3 10.0 105 103-207 167-290 (1005)
140 PF06685 DUF1186: Protein of u 72.4 70 0.0015 29.4 11.5 121 174-308 33-161 (249)
141 PF08569 Mo25: Mo25-like; Int 72.2 95 0.0021 29.8 13.2 51 259-309 253-313 (335)
142 PF00790 VHS: VHS domain; Int 71.6 45 0.00097 27.4 9.4 74 104-177 38-126 (140)
143 KOG1517|consensus 71.2 28 0.00061 38.2 9.6 149 26-175 545-735 (1387)
144 KOG1992|consensus 71.1 1.6E+02 0.0034 31.9 15.4 133 35-172 367-527 (960)
145 PF00514 Arm: Armadillo/beta-c 71.0 8.6 0.00019 24.4 3.9 28 144-171 13-40 (41)
146 PF11698 V-ATPase_H_C: V-ATPas 70.5 13 0.00028 30.2 5.6 51 155-205 56-111 (119)
147 KOG1992|consensus 69.8 51 0.0011 35.3 10.9 57 263-319 459-521 (960)
148 KOG2005|consensus 69.6 32 0.00069 36.0 9.3 98 121-223 621-719 (878)
149 PF12755 Vac14_Fab1_bd: Vacuol 69.3 51 0.0011 25.5 9.6 54 159-212 2-59 (97)
150 PF11698 V-ATPase_H_C: V-ATPas 68.6 15 0.00032 29.9 5.5 65 258-322 41-111 (119)
151 KOG0915|consensus 67.5 1.3E+02 0.0029 34.6 14.0 183 109-322 999-1198(1702)
152 cd03572 ENTH_epsin_related ENT 67.4 30 0.00065 28.2 7.2 54 128-182 24-77 (122)
153 PF08389 Xpo1: Exportin 1-like 67.2 39 0.00084 27.2 8.1 48 157-205 2-50 (148)
154 PF08506 Cse1: Cse1; InterPro 67.1 78 0.0017 30.8 11.3 134 145-284 212-370 (370)
155 KOG1241|consensus 65.6 82 0.0018 33.5 11.4 123 81-206 65-200 (859)
156 PF12460 MMS19_C: RNAPII trans 65.5 1.4E+02 0.0031 29.2 21.3 144 47-193 112-284 (415)
157 PF03130 HEAT_PBS: PBS lyase H 64.2 14 0.00031 21.4 3.5 26 124-149 1-26 (27)
158 PF14500 MMS19_N: Dos2-interac 64.2 1.2E+02 0.0026 28.0 18.4 204 112-322 3-233 (262)
159 cd03567 VHS_GGA VHS domain fam 61.4 94 0.002 25.8 10.5 55 162-216 20-74 (139)
160 KOG2973|consensus 61.3 61 0.0013 30.9 8.8 78 112-192 7-94 (353)
161 cd07064 AlkD_like_1 A new stru 61.2 21 0.00045 31.7 5.7 136 79-222 53-192 (208)
162 PF12830 Nipped-B_C: Sister ch 60.6 60 0.0013 28.2 8.4 73 138-210 3-75 (187)
163 KOG1293|consensus 59.5 2.3E+02 0.005 29.7 20.1 131 81-215 386-539 (678)
164 KOG1822|consensus 59.5 2.2E+02 0.0048 33.6 14.1 210 108-321 876-1125(2067)
165 KOG2025|consensus 59.0 2.5E+02 0.0054 29.9 15.9 110 81-196 135-246 (892)
166 smart00288 VHS Domain present 57.2 1.1E+02 0.0023 25.1 10.2 53 163-215 20-72 (133)
167 smart00638 LPD_N Lipoprotein N 56.5 2.4E+02 0.0051 28.8 22.6 238 44-302 286-557 (574)
168 cd03569 VHS_Hrs_Vps27p VHS dom 56.5 28 0.00061 29.0 5.4 27 106-132 39-65 (142)
169 KOG2933|consensus 56.2 1.3E+02 0.0028 28.7 10.0 117 90-207 71-197 (334)
170 KOG2149|consensus 56.2 2E+02 0.0043 28.3 11.6 56 148-203 63-122 (393)
171 smart00273 ENTH Epsin N-termin 55.4 1.1E+02 0.0023 24.6 9.6 72 143-214 2-74 (127)
172 KOG2759|consensus 53.5 28 0.00061 34.3 5.5 63 143-205 366-434 (442)
173 PF11701 UNC45-central: Myosin 53.5 38 0.00081 28.6 5.8 117 154-275 16-144 (157)
174 PF01347 Vitellogenin_N: Lipop 51.6 2.9E+02 0.0062 28.4 16.3 184 103-301 393-600 (618)
175 COG5116 RPN2 26S proteasome re 51.2 3.1E+02 0.0067 28.6 14.6 164 28-207 479-649 (926)
176 KOG2011|consensus 50.7 65 0.0014 35.5 8.1 91 117-207 296-397 (1048)
177 PF08167 RIX1: rRNA processing 50.6 1.6E+02 0.0034 25.0 13.1 67 137-203 19-91 (165)
178 KOG2259|consensus 50.4 3.3E+02 0.0073 28.8 21.8 154 49-210 216-440 (823)
179 smart00567 EZ_HEAT E-Z type HE 49.6 25 0.00053 20.5 2.9 25 123-147 2-26 (30)
180 KOG2759|consensus 49.0 19 0.0004 35.5 3.5 65 257-321 363-433 (442)
181 cd03568 VHS_STAM VHS domain fa 48.8 1.6E+02 0.0034 24.6 9.6 52 164-215 21-72 (144)
182 COG5231 VMA13 Vacuolar H+-ATPa 47.9 39 0.00085 32.4 5.3 65 257-321 353-423 (432)
183 KOG2933|consensus 47.6 1.3E+02 0.0029 28.6 8.7 100 72-172 129-234 (334)
184 KOG0168|consensus 47.5 64 0.0014 34.8 7.2 73 138-210 546-630 (1051)
185 KOG1943|consensus 47.0 1.1E+02 0.0023 33.9 8.9 74 137-210 335-410 (1133)
186 smart00185 ARM Armadillo/beta- 46.9 36 0.00077 20.8 3.6 27 144-170 13-39 (41)
187 cd03564 ANTH_AP180_CALM ANTH d 46.2 88 0.0019 24.8 6.6 64 146-214 3-71 (117)
188 KOG2274|consensus 45.2 4.5E+02 0.0098 28.8 13.4 98 109-209 495-602 (1005)
189 PF12765 Cohesin_HEAT: HEAT re 45.2 34 0.00074 22.2 3.3 38 166-203 2-41 (42)
190 PF09450 DUF2019: Domain of un 44.7 38 0.00082 26.9 4.0 37 148-187 52-88 (106)
191 KOG4653|consensus 44.2 4.6E+02 0.01 28.6 15.4 68 108-175 847-921 (982)
192 cd00871 PI4Ka Phosphoinositide 42.5 51 0.0011 28.6 4.9 46 109-155 73-118 (175)
193 COG5215 KAP95 Karyopherin (imp 41.7 4.3E+02 0.0094 27.6 21.3 68 109-176 367-441 (858)
194 PF07539 DRIM: Down-regulated 41.0 41 0.0009 28.0 4.0 48 141-191 15-62 (141)
195 PF14676 FANCI_S2: FANCI solen 40.2 2.3E+02 0.005 24.0 9.9 49 167-215 42-90 (158)
196 KOG1293|consensus 39.9 4.7E+02 0.01 27.5 12.4 102 142-243 418-531 (678)
197 KOG0211|consensus 39.4 1.2E+02 0.0027 32.4 8.1 82 121-202 570-657 (759)
198 PF05004 IFRD: Interferon-rela 39.1 3.4E+02 0.0073 25.6 18.6 169 146-321 46-252 (309)
199 KOG2229|consensus 39.1 4.5E+02 0.0097 27.0 12.6 149 168-321 4-161 (616)
200 PF07539 DRIM: Down-regulated 37.3 1.2E+02 0.0027 25.1 6.3 41 113-154 22-62 (141)
201 COG5110 RPN1 26S proteasome re 37.3 1.8E+02 0.0039 30.1 8.3 93 126-223 627-720 (881)
202 KOG0413|consensus 36.9 1.3E+02 0.0027 33.3 7.5 85 123-207 592-683 (1529)
203 PHA02922 hypothetical protein; 36.5 1.8E+02 0.0039 24.3 6.8 71 83-157 23-97 (153)
204 KOG0904|consensus 35.9 44 0.00096 36.0 4.0 38 116-154 619-656 (1076)
205 PF12530 DUF3730: Protein of u 35.6 3.3E+02 0.0071 24.4 17.8 134 82-215 11-157 (234)
206 KOG1243|consensus 35.4 3.6E+02 0.0079 28.5 10.4 98 109-206 331-434 (690)
207 PF11701 UNC45-central: Myosin 35.1 2.7E+02 0.0059 23.3 9.6 89 232-321 59-154 (157)
208 PF00613 PI3Ka: Phosphoinositi 34.8 3E+02 0.0066 23.8 10.2 76 73-153 46-121 (184)
209 PF01603 B56: Protein phosphat 34.6 4.5E+02 0.0099 25.8 18.0 194 27-220 148-381 (409)
210 PF01603 B56: Protein phosphat 34.0 4.6E+02 0.01 25.7 14.3 72 210-284 248-321 (409)
211 PF06685 DUF1186: Protein of u 33.1 3.3E+02 0.0072 25.0 8.9 31 147-177 115-147 (249)
212 PF10274 ParcG: Parkin co-regu 32.9 3.4E+02 0.0073 23.8 11.9 68 142-210 37-110 (183)
213 PF14664 RICTOR_N: Rapamycin-i 32.8 4.7E+02 0.01 25.4 13.7 121 166-294 6-142 (371)
214 PF14961 BROMI: Broad-minded p 32.7 1.5E+02 0.0032 33.4 7.4 64 112-175 165-234 (1296)
215 PF08623 TIP120: TATA-binding 32.2 1.4E+02 0.003 25.8 5.9 57 157-214 41-99 (169)
216 cd03561 VHS VHS domain family; 31.3 2.8E+02 0.0061 22.4 8.7 65 140-204 34-107 (133)
217 PF12333 Ipi1_N: Rix1 complex 30.8 1.4E+02 0.0031 23.1 5.4 39 139-177 7-45 (102)
218 PF09324 DUF1981: Domain of un 30.6 2.3E+02 0.0051 21.2 6.9 63 140-202 14-81 (86)
219 KOG2032|consensus 30.4 3E+02 0.0066 27.9 8.6 65 141-205 256-325 (533)
220 PF12074 DUF3554: Domain of un 29.5 2.7E+02 0.0059 26.3 8.1 51 141-191 202-255 (339)
221 PF09759 Atx10homo_assoc: Spin 29.1 57 0.0012 25.7 2.8 27 151-177 38-64 (102)
222 cd03568 VHS_STAM VHS domain fa 28.9 3.4E+02 0.0073 22.5 8.7 64 143-206 37-107 (144)
223 PF14228 MOR2-PAG1_mid: Cell m 28.0 8.1E+02 0.018 27.7 12.2 116 72-187 503-626 (1120)
224 COG5231 VMA13 Vacuolar H+-ATPa 27.6 1.1E+02 0.0023 29.6 4.7 62 145-206 358-425 (432)
225 PF06371 Drf_GBD: Diaphanous G 27.3 1.8E+02 0.004 24.4 6.0 51 272-322 128-183 (187)
226 PF10521 DUF2454: Protein of u 26.3 5.2E+02 0.011 23.8 11.6 38 139-176 115-152 (282)
227 KOG0211|consensus 26.3 8.5E+02 0.018 26.3 18.6 248 65-321 391-659 (759)
228 KOG4413|consensus 25.7 6.3E+02 0.014 24.6 18.6 182 48-234 63-275 (524)
229 KOG1967|consensus 25.3 6.2E+02 0.013 27.9 10.2 193 121-320 810-1018(1030)
230 PF08568 Kinetochor_Ybp2: Unch 25.1 8E+02 0.017 25.6 11.6 69 137-207 436-505 (633)
231 KOG2274|consensus 25.0 2.5E+02 0.0055 30.6 7.3 61 148-208 95-156 (1005)
232 cd00870 PI3Ka_III Phosphoinosi 24.8 4.4E+02 0.0095 22.5 10.9 67 81-154 55-123 (166)
233 cd03565 VHS_Tom1 VHS domain fa 24.8 4E+02 0.0086 22.0 9.8 52 164-215 22-74 (141)
234 KOG4535|consensus 24.3 7.9E+02 0.017 25.2 11.6 148 154-321 7-174 (728)
235 KOG2038|consensus 24.0 3.6E+02 0.0078 29.1 8.1 139 81-222 279-424 (988)
236 PF04388 Hamartin: Hamartin pr 23.4 5.2E+02 0.011 27.3 9.5 64 122-185 82-153 (668)
237 PLN03076 ARF guanine nucleotid 23.0 1.4E+03 0.029 27.5 14.3 246 47-312 1198-1517(1780)
238 cd00256 VATPase_H VATPase_H, r 21.9 1.9E+02 0.0041 28.9 5.5 60 144-203 354-419 (429)
239 PF13730 HTH_36: Helix-turn-he 21.8 82 0.0018 21.0 2.2 31 89-119 7-37 (55)
240 PF12397 U3snoRNP10: U3 small 21.1 4.1E+02 0.0089 20.8 8.9 67 139-207 2-72 (121)
241 KOG1988|consensus 21.0 1.1E+03 0.024 25.8 18.3 163 26-192 20-187 (970)
242 COG5656 SXM1 Importin, protein 20.8 3.9E+02 0.0085 28.8 7.6 88 121-208 429-528 (970)
243 PF14222 MOR2-PAG1_N: Cell mor 20.5 3.5E+02 0.0076 27.9 7.4 72 123-195 450-525 (552)
244 PHA02861 uncharacterized prote 20.5 5.2E+02 0.011 21.7 9.9 79 84-167 17-100 (149)
245 PF14676 FANCI_S2: FANCI solen 20.4 2.7E+02 0.0059 23.6 5.6 40 128-168 118-157 (158)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.3e-55 Score=452.53 Aligned_cols=302 Identities=18% Similarity=0.273 Sum_probs=260.5
Q ss_pred ccccchHHHHhhhhcCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcC
Q psy18014 4 LKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQS 83 (323)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s 83 (323)
.|+++++||.+|..+.+..||...++++.+|++.-.+++ +..+++++|+|+|++|++|+| ++.+|++|+++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~-~~~~kk~alKkvIa~mt~G~D-----vS~LF~dVvk~~~S 79 (746)
T PTZ00429 6 RKARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGT-DSYRKKAAVKRIIANMTMGRD-----VSYLFVDVVKLAPS 79 (746)
T ss_pred HHHHHHHHHHhhcCCCccccccccccchHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC-----chHHHHHHHHHhCC
Confidence 378999999999999999999888888999976444444 445556999999999999998 89999999999999
Q ss_pred CCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHH
Q psy18014 84 KDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSA 162 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~ 162 (323)
+|+++|||+|+|+.+|++..++ ++|+||+|+||++|+||++||+|||+||+|+.+++++++..+|++++.|++|||||+
T Consensus 80 ~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKt 159 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKT 159 (746)
T ss_pred CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999999997655 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh-------HHHHHHHHhhccCCChHHH
Q psy18014 163 AVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA-------VTKLVAKLTKFTMKSPYAT 233 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~-------~~~lv~~L~~~~~~~~~~~ 233 (323)
|++|++|+|+.+|++++ +|.+++.+++.|+||+|++||+++++++...++.. +.+++..+. -.+||+|
T Consensus 160 Aalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~---e~~EW~Q 236 (746)
T PTZ00429 160 AAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP---ECNEWGQ 236 (746)
T ss_pred HHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh---cCChHHH
Confidence 99999999999999875 69999999999999999999999999998776432 234444443 3589999
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC-CHHhHhhHH----HHHHHHhcC
Q psy18014 234 CMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-SARELAPAV----SVLQLFCSS 308 (323)
Q Consensus 234 ~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~~~~~~~~----~~l~~~L~s 308 (323)
+.+|+++..+.+.+. .+.+.+++.+.++|+|+|+||+|+|+|+|+++... ++.....+. .++ .+|.+
T Consensus 237 i~IL~lL~~y~P~~~-------~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL-v~L~s 308 (746)
T PTZ00429 237 LYILELLAAQRPSDK-------ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL-LTLSR 308 (746)
T ss_pred HHHHHHHHhcCCCCc-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH-HHhhC
Confidence 999999987743322 35789999999999999999999999999999753 234444433 333 35577
Q ss_pred CChhhHHHHHhhhc
Q psy18014 309 PKPVLRFAAVRTLN 322 (323)
Q Consensus 309 ~~~niry~aL~~l~ 322 (323)
+++|+||+||+.++
T Consensus 309 s~~eiqyvaLr~I~ 322 (746)
T PTZ00429 309 RDAETQYIVCKNIH 322 (746)
T ss_pred CCccHHHHHHHHHH
Confidence 88999999999874
No 2
>KOG1078|consensus
Probab=100.00 E-value=9.1e-51 Score=402.48 Aligned_cols=299 Identities=73% Similarity=1.070 Sum_probs=288.9
Q ss_pred cCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHH
Q psy18014 18 RTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIK 97 (323)
Q Consensus 18 ~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~ 97 (323)
+++++|.+.||+.++||+|.|+++|++++||+..|.|++|++.+|+.|++.|++++||+|+|+||++|..+||++|+.++
T Consensus 10 ~~s~~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ik 89 (865)
T KOG1078|consen 10 GKSNVFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIK 89 (865)
T ss_pred CCCccccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH
Q psy18014 98 ELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL 177 (323)
Q Consensus 98 ~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~ 177 (323)
.++...++.++++|+++||.+..++.+|+.|||+||+|.+.+|.+.+++++++++.|++|.|+..|++..+|++..+++.
T Consensus 90 els~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~ 169 (865)
T KOG1078|consen 90 ELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDV 169 (865)
T ss_pred hccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCC
Q psy18014 178 VKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWS 257 (323)
Q Consensus 178 v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~ 257 (323)
+++|.+++++...+.|.+|+|||++++|.++++|+.+..+++..+..+...+|++.|.++|+..+.+.+++. .
T Consensus 170 vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~-------~ 242 (865)
T KOG1078|consen 170 VKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQ-------A 242 (865)
T ss_pred HHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhccc-------c
Confidence 999999999999999999999999999999999999999999999888899999999999999988766643 2
Q ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhcC
Q psy18014 258 NSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323 (323)
Q Consensus 258 ~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~~ 323 (323)
...+.+++++||+|.+.+|++||++.|+.++......++.+++.++.||+++.+.+||+|+|+|||
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnk 308 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNK 308 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999987788999999999999999999999999999985
No 3
>KOG1062|consensus
Probab=100.00 E-value=3.5e-48 Score=385.06 Aligned_cols=299 Identities=20% Similarity=0.344 Sum_probs=265.8
Q ss_pred chHHHHhhhhcCCCCCchhhHHHHHHHH----HHccCCCCChHHHHHHHHHHHHHHHcCCC--CCchhhhhhHHHHHHhh
Q psy18014 8 APIQQLLRYKRTGNPFQNLDKTAVLQEA----RTFNDTPVNPKKCTHILTKILYLINQGEQ--LGTQEATDAFFAMTKLF 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ek~~i~qe~----~~f~~~~~~~~k~~~~l~kli~~~~~G~~--~~~~e~s~lf~~vvkl~ 81 (323)
-+++.++|.+++.+. .+.|.+.|.+|+ +.|+++..+.+++++.|.|++|.+|+|++ ||++|+ +|++
T Consensus 8 srL~dlIr~IraakT-~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqiec-------lKLi 79 (866)
T KOG1062|consen 8 SRLRDLIRAIRAAKT-AAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIEC-------LKLI 79 (866)
T ss_pred chHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHH-------HHHh
Confidence 689999999999977 555555556673 58999888888888999999999999986 999887 7999
Q ss_pred cCCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHH
Q psy18014 82 QSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVS 160 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVR 160 (323)
+|+++..||+|||+...+.+..+| .+|+||+++|||+|+|.++.|+||.++|+|.++||++++.+.|.+.+.+++||||
T Consensus 80 as~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~ir 159 (866)
T KOG1062|consen 80 ASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIR 159 (866)
T ss_pred cCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHH
Confidence 999999999999999999887655 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---HHHHHHHHh--------------
Q psy18014 161 SAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---VTKLVAKLT-------------- 223 (323)
Q Consensus 161 k~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---~~~lv~~L~-------------- 223 (323)
|+|++|++|++++.|++++-|++.-.++|++++++|+..++.++.++.+.++.. ++++++.|.
T Consensus 160 KKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe 239 (866)
T KOG1062|consen 160 KKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE 239 (866)
T ss_pred HHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999998875433 345554441
Q ss_pred --hccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhc------CCChhHHHHHHHHHHcccCCCHHhH
Q psy18014 224 --KFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLR------HKSETVVYEAAHAIVNLRRTSAREL 295 (323)
Q Consensus 224 --~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~------~~~~aV~~ea~k~i~~l~~~~~~~~ 295 (323)
..++++||.|+++||+++-+...++.. .+.+.++|....+ +.++||+||||+||+.+.+. ..++
T Consensus 240 ydv~gi~dPFLQi~iLrlLriLGq~d~da-------Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~-~~Lr 311 (866)
T KOG1062|consen 240 YDVHGISDPFLQIRILRLLRILGQNDADA-------SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-SGLR 311 (866)
T ss_pred cCccCCCchHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC-chHH
Confidence 358899999999999998777766644 5777789988764 56789999999999999874 6899
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 296 APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 296 ~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..|++.|++||.++|+|+||+||..|-
T Consensus 312 vlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 312 VLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred HHHHHHHHHHhcCCccceeeeehhhHH
Confidence 999999999999999999999999874
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=4.6e-45 Score=365.45 Aligned_cols=283 Identities=24% Similarity=0.390 Sum_probs=246.2
Q ss_pred hHHHHHHHHH-HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc
Q psy18014 27 DKTAVLQEAR-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED 105 (323)
Q Consensus 27 ek~~i~qe~~-~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~ 105 (323)
|+..+.+|++ .+++.+.+..+++++|+|+++++++|+| ++++|+.++++++|+|+..||+||+|+..+.+..++
T Consensus 1 ~~~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~ 75 (526)
T PF01602_consen 1 ERKRISQELAKILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE 75 (526)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH
T ss_pred CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh
Confidence 4667777853 4444446777888999999999999998 679999999999999999999999999999987666
Q ss_pred -hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH-HHH
Q psy18014 106 -VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-WVN 183 (323)
Q Consensus 106 -~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-~~~ 183 (323)
++|++|+++||++|+||++||+|||+||++.+++|++.+.+.|.+++.|++|||||+|++|++++|+.+|+.++. |.+
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~ 155 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIP 155 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcChh---hHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCc-
Q psy18014 184 EVQEALNSENVMVQYHALGLLYHIRKSDQL---AVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSN- 258 (323)
Q Consensus 184 ~l~~~l~d~~~~V~~~al~ll~~l~~~d~~---~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~- 258 (323)
.+.+++.|.||+|+.+|+.++++++..++. ...++++.|... +.++||.|+.+++++..+.+.++.. .
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-------~~ 228 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED-------AD 228 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-------HH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh-------hh
Confidence 999999999999999999999999333322 245556655433 6789999999999998876555533 3
Q ss_pred -hhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 259 -SPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 259 -~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..+++.+.+.+++++++|+|||+++++.+... ......+++.+..|++++++|+||+||+.++
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 57899999999999999999999999999874 5688999999999999999999999999875
No 5
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.1e-42 Score=330.75 Aligned_cols=299 Identities=38% Similarity=0.591 Sum_probs=280.4
Q ss_pred cCCCCCchhhHHHHHHHHH-HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHH
Q psy18014 18 RTGNPFQNLDKTAVLQEAR-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGI 96 (323)
Q Consensus 18 ~~~~~~~~~ek~~i~qe~~-~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl 96 (323)
+-++.|...+++.+.|+++ .|+++|+++++||..+.++.|++..|+.|++.+++++||.++|+||++|+++|..+|+++
T Consensus 10 ~~~~vf~~~~~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aI 89 (898)
T COG5240 10 MKTKVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAI 89 (898)
T ss_pred cccccccChhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445678889999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCcchHhhhhhhhhhcCCCCh-HHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh
Q psy18014 97 KELSNIAEDVIIVTSSLTKDMTGKED-LYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 97 ~~~~~~~~~~lL~iNsl~kDl~~~N~-~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p 175 (323)
+.+.+..|+++|++|+++||++..-| .+|.+|+|+|.++.+.+++.++++++.+++.++++.+|.+|++..|||++.+.
T Consensus 90 kelS~~tedvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~ 169 (898)
T COG5240 90 KELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNF 169 (898)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccH
Confidence 99999999999999999999999888 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC----------------CChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhc-cCCChHHHHHHHH
Q psy18014 176 DLVKRWVNEVQEALNS----------------ENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKF-TMKSPYATCMLIR 238 (323)
Q Consensus 176 ~~v~~~~~~l~~~l~d----------------~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~-~~~~~~~~~~llr 238 (323)
+.+++|.++.+++.-| .+|.-+|||+++||.+++.|.++..++++++... ...+..+-+.++|
T Consensus 170 ~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr 249 (898)
T COG5240 170 NQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVR 249 (898)
T ss_pred HHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHH
Confidence 9999999999998765 3678999999999999999999999999999733 5678899999999
Q ss_pred HHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHccc--CCCHHhHhhHHHHHHHHhcCCChhhHHH
Q psy18014 239 IVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLR--RTSARELAPAVSVLQLFCSSPKPVLRFA 316 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~--~~~~~~~~~~~~~l~~~L~s~~~niry~ 316 (323)
+...++.++++. ..++..+|..||++..++|.+|++|.++.+. +..++.++++++.|+.||+++...+||+
T Consensus 250 ~~~~ll~~n~q~-------~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFs 322 (898)
T COG5240 250 ATVELLKENSQA-------LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFS 322 (898)
T ss_pred HHHHHHHhChHH-------HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 999888877764 7888899999999999999999999999975 4568899999999999999999999999
Q ss_pred HHhhhcC
Q psy18014 317 AVRTLNK 323 (323)
Q Consensus 317 aL~~l~~ 323 (323)
|+|+||+
T Consensus 323 A~Riln~ 329 (898)
T COG5240 323 AMRILNQ 329 (898)
T ss_pred HHHHHHH
Confidence 9999985
No 6
>KOG1061|consensus
Probab=100.00 E-value=2.6e-43 Score=350.86 Aligned_cols=284 Identities=20% Similarity=0.334 Sum_probs=249.7
Q ss_pred CCCchhhHHHHHHHHH-HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHh
Q psy18014 21 NPFQNLDKTAVLQEAR-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKEL 99 (323)
Q Consensus 21 ~~~~~~ek~~i~qe~~-~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~ 99 (323)
++|+..++..++-|.+ .+.+. .. .|.+++++|+|+.|+.|.| +|.+|++|+|++++.|.++|||+|+|+.+|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s~-~~-~kr~~a~kkvIa~Mt~G~D-----vSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNSQ-SK-EKRKDAVKKVIAYMTVGKD-----VSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhhh-hh-hhHHHHHHHHHhcCccCcc-----hHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 5677788888888865 55333 33 5666999999999999987 899999999999999999999999999999
Q ss_pred cccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH
Q psy18014 100 SNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV 178 (323)
Q Consensus 100 ~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v 178 (323)
|+.. +++++++|++.||+.|+||++|++|+|++++++.+.+.+++..++++++.|.+|||||+|+.|+.++|+.+++++
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 9975 559999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh-h--------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q psy18014 179 K--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL-A--------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQ 247 (323)
Q Consensus 179 ~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~-~--------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~ 247 (323)
+ .+.+.+.+++.|.||+|+.+|++.+.+|.+.++. . ..+++..+. ..++|+|+.++..+..+.+.+
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d 233 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKD 233 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCC
Confidence 7 4999999999999999999999999999887652 1 244444444 458999999999999887665
Q ss_pred hcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCC----HHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 248 NAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTS----ARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~----~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+. +++.+++.+.+.|+|+|++|++.++|+|+++.... ..++.+..+++-.++++.. +++|+|||+++
T Consensus 234 ~~-------ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~ 304 (734)
T KOG1061|consen 234 SR-------EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNIN 304 (734)
T ss_pred ch-------hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHH
Confidence 53 48999999999999999999999999999986432 2456888888988898776 99999999875
No 7
>KOG1060|consensus
Probab=100.00 E-value=6e-39 Score=318.13 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=240.1
Q ss_pred HHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchHhh
Q psy18014 31 VLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVIIV 109 (323)
Q Consensus 31 i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL~ 109 (323)
--+++..+.+++.+..|| ++|||||++|+.|.| ++.+|++|||.++|+|.++|||+|+|+..||+. +++++|.
T Consensus 36 ~~~dL~~lLdSnkd~~Kl-eAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS 109 (968)
T KOG1060|consen 36 RHDDLKQLLDSNKDSLKL-EAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS 109 (968)
T ss_pred ChHHHHHHHhccccHHHH-HHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee
Confidence 345577888888899998 999999999999998 899999999999999999999999999999996 5669999
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
||++||+|.|||+++||-|||+|++|+.+-+++-+.-.|+++..|.+|||||.|+.|+-|||..+|+.=..+.+-+..+|
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998778999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhcCh----hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhh---hhcc------------
Q psy18014 190 NSENVMVQYHALGLLYHIRKSDQ----LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIED---QNAA------------ 250 (323)
Q Consensus 190 ~d~~~~V~~~al~ll~~l~~~d~----~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~---~~~~------------ 250 (323)
.|++|.|+.+|+....+++.+.- -.++++.+.|.. -++|+|+.+|.++.+|... +|..
T Consensus 190 aD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~d---vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~ 266 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPD---VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSC 266 (968)
T ss_pred cCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccc---hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccc
Confidence 99999999999998888876431 234666665542 3679999888777665221 2211
Q ss_pred -----------cCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHh
Q psy18014 251 -----------SGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVR 319 (323)
Q Consensus 251 -----------~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~ 319 (323)
.-.+|.+...+++-..++|++.|++|++.++.++.++.. .......+..|.++|.++ +++||+.|+
T Consensus 267 ~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP--~~~~~~i~kaLvrLLrs~-~~vqyvvL~ 343 (968)
T KOG1060|consen 267 NLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--KNQVTKIAKALVRLLRSN-REVQYVVLQ 343 (968)
T ss_pred cccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC--HHHHHHHHHHHHHHHhcC-CcchhhhHH
Confidence 002355677888999999999999999999999999964 456777788888888866 799999999
Q ss_pred hhc
Q psy18014 320 TLN 322 (323)
Q Consensus 320 ~l~ 322 (323)
.++
T Consensus 344 nIa 346 (968)
T KOG1060|consen 344 NIA 346 (968)
T ss_pred HHH
Confidence 874
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-37 Score=313.37 Aligned_cols=265 Identities=18% Similarity=0.285 Sum_probs=222.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC-cchHhhhhhhhhhcCCCCh
Q psy18014 44 NPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA-EDVIIVTSSLTKDMTGKED 122 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-~~~lL~iNsl~kDl~~~N~ 122 (323)
+.++.+++||++|+.|+.|+| |+.+|++|+|.++|+|.++|||+|+||..|++.. +++++++|+++||++||||
T Consensus 32 n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 444556999999999999999 8999999999999999999999999999999975 6699999999999999999
Q ss_pred HHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH--HHHHHHHHhcCCChHHHHHH
Q psy18014 123 LYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR--WVNEVQEALNSENVMVQYHA 200 (323)
Q Consensus 123 ~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~--~~~~l~~~l~d~~~~V~~~a 200 (323)
++||+|||+|+.++.+++++++.++|++++.|++|||||+|++|+.++|+.++++..+ ....+..++.|.||.|+.+|
T Consensus 107 ~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nA 186 (757)
T COG5096 107 EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANA 186 (757)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998864 67788889999999999999
Q ss_pred HHHHHHHHhcChhhH----HHHHHHHhhccCC--ChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCCh
Q psy18014 201 LGLLYHIRKSDQLAV----TKLVAKLTKFTMK--SPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSE 274 (323)
Q Consensus 201 l~ll~~l~~~d~~~~----~~lv~~L~~~~~~--~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 274 (323)
+..++++...+...+ ...+++|....|. .+|.+..++..+....+..|. +...+.+.+.+.+++.|+
T Consensus 187 l~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~-------s~~~~~~~~~~~~~~~n~ 259 (757)
T COG5096 187 LASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD-------SAEDFEERLSPPLQHNNA 259 (757)
T ss_pred HHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC-------cHHHHHHhccchhhhCcH
Confidence 999999977633333 2223333322333 268777777666544444442 478899999999999999
Q ss_pred hHHHHHHHHHHcccCC--CHHhHhhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 275 TVVYEAAHAIVNLRRT--SARELAPAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 275 aV~~ea~k~i~~l~~~--~~~~~~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
+|+.-+++.++.+... .........+++..++..+...+.|+..++
T Consensus 260 ~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~ 307 (757)
T COG5096 260 EVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRN 307 (757)
T ss_pred HHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999998632 124667777888888887767777777654
No 9
>KOG1058|consensus
Probab=100.00 E-value=1.6e-37 Score=306.71 Aligned_cols=261 Identities=18% Similarity=0.319 Sum_probs=210.4
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc------CcchHhhhhhhh
Q psy18014 41 TPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI------AEDVIIVTSSLT 114 (323)
Q Consensus 41 ~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~------~~~~lL~iNsl~ 114 (323)
++.+..|+ ++||++|+.|.+|++++++.|+.+.|.+ +++|+++||+.|+||+.+.+. -+|++|+||+++
T Consensus 31 k~~~~~KI-eamK~ii~~mlnGe~~p~Llm~IiRfvl----ps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~R 105 (948)
T KOG1058|consen 31 KGDDEVKI-EAMKKIIALMLNGEDLPSLLMTIIRFVL----PSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYR 105 (948)
T ss_pred cCChHHHH-HHHHHHHHHHHcCCCchHHHHHHhheee----ccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHh
Confidence 44566666 9999999999999999888887777765 999999999999999999543 378999999999
Q ss_pred hhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhh-------ccChhHHHHHHHHHHH
Q psy18014 115 KDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMT-------KHSPDLVKRWVNEVQE 187 (323)
Q Consensus 115 kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~-------~~~p~~v~~~~~~l~~ 187 (323)
|||+|||++|||.+||+||+++.+|+++++.+.|+++|.|+++||||+|++|++-+| +..||++++|+...++
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~D 185 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQD 185 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999988555 4568888888888888
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcChhhH-HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHH
Q psy18014 188 ALNSENVMVQYHALGLLYHIRKSDQLAV-TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLE 266 (323)
Q Consensus 188 ~l~d~~~~V~~~al~ll~~l~~~d~~~~-~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 266 (323)
..+.+|+.++.+-. |+... ..+.......+-.++..|..++.++.+.-...|.+ ...++..+-
T Consensus 186 psCkRNAFi~L~~~---------D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-------~~~~i~~i~ 249 (948)
T KOG1058|consen 186 PSCKRNAFLMLFTT---------DPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-------KARYIRCIY 249 (948)
T ss_pred chhHHHHHHHHHhc---------CHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-------hhHHHHHHH
Confidence 77777765544321 22211 11111111112235566666666555433345653 789999999
Q ss_pred HHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 267 TCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 267 ~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..|++++++|+|||+-+++.+++.++.+..++...+......+|+|++...|..|.
T Consensus 250 ~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 250 NLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred HHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHH
Confidence 99999999999999999999998777788888999999999999999998887654
No 10
>KOG1077|consensus
Probab=100.00 E-value=3.6e-35 Score=288.44 Aligned_cols=282 Identities=21% Similarity=0.343 Sum_probs=241.8
Q ss_pred hhHHHHHHH----HHHccCC-CCChHHHHHHHHHHHHHHHcCC--CCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHH
Q psy18014 26 LDKTAVLQE----ARTFNDT-PVNPKKCTHILTKILYLINQGE--QLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKE 98 (323)
Q Consensus 26 ~ek~~i~qe----~~~f~~~-~~~~~k~~~~l~kli~~~~~G~--~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~ 98 (323)
.|+..|-.| +..|... -++..++|+++.|++|..++|+ |||++|+ ++++.|+.+..|.+||+++..
T Consensus 28 aE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEa-------V~LLss~kysEKqIGYl~is~ 100 (938)
T KOG1077|consen 28 AEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEA-------VNLLSSNKYSEKQIGYLFISL 100 (938)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHH-------HHHhhcCCccHHHHhHHHHHH
Confidence 445666667 3588877 4688888899999999999996 5999886 688999999999999999999
Q ss_pred hcccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCC--hHHHHHHHHHHHhhhccCh
Q psy18014 99 LSNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRN--SAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 99 ~~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~--~yVRk~A~~~~~kl~~~~p 175 (323)
+-+.+ |.+-+++|+++||+.+.||...++||.++++|+..+|++.+...|-+.|.+.+ +|||++|++|+++||+..|
T Consensus 101 L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp 180 (938)
T KOG1077|consen 101 LLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP 180 (938)
T ss_pred HHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc
Confidence 87655 55679999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred hHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH----HHHHHHHh--------------hccCCChHHHHH
Q psy18014 176 DLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV----TKLVAKLT--------------KFTMKSPYATCM 235 (323)
Q Consensus 176 ~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~----~~lv~~L~--------------~~~~~~~~~~~~ 235 (323)
|++. .|..++-.+|+|.+-+|..++..++..+.+.++.++ .+-+..|. ...+++||+|++
T Consensus 181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 9986 699999999999999999999999998887777664 23333331 346899999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCC--------------ChhHHHHHHHHHHcccCCCHHhHhhHHHH
Q psy18014 236 LIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHK--------------SETVVYEAAHAIVNLRRTSARELAPAVSV 301 (323)
Q Consensus 236 llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------------~~aV~~ea~k~i~~l~~~~~~~~~~~~~~ 301 (323)
++|++..+ +. |++ ......+.+.++.+|... .+||+|||++.++++.+ +++++.++++.
T Consensus 261 l~rlLq~~-p~-~~D----~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~ 333 (938)
T KOG1077|consen 261 LLRLLQIY-PT-PED----PSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQ 333 (938)
T ss_pred HHHHHHhC-CC-CCC----chHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 99999876 22 111 124677888888888533 36999999999999988 58999999999
Q ss_pred HHHHhcCCChhhHHHHHhhh
Q psy18014 302 LQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 302 l~~~L~s~~~niry~aL~~l 321 (323)
|+.||++.++|+||+||..+
T Consensus 334 Lg~fls~rE~NiRYLaLEsm 353 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESM 353 (938)
T ss_pred HHHHhhcccccchhhhHHHH
Confidence 99999999999999999876
No 11
>KOG1059|consensus
Probab=100.00 E-value=1.2e-33 Score=278.45 Aligned_cols=287 Identities=15% Similarity=0.261 Sum_probs=243.5
Q ss_pred CCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHH-HHHh
Q psy18014 21 NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLG-IKEL 99 (323)
Q Consensus 21 ~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Yly-l~~~ 99 (323)
..|+...-..+++|.+ ..+.+ .|. +++.|+.|+.+.|.| ++|.-|+++..|.|..+..||.||++ ...|
T Consensus 31 ~~fis~~l~e~r~E~k---~~d~~-~k~-~a~~kl~yl~mlg~d-----~swa~f~iveVmsssk~~~krigylaa~qSf 100 (877)
T KOG1059|consen 31 EKFISQCLEEIRQELK---SDDLN-VKS-NAVLKLTYLEMLGVD-----MSWAAFHIVEVMSSSKFQQKRIGYLAASQSF 100 (877)
T ss_pred HHHHHHHHHHHHHHhh---chhhh-hhH-HHHHHHHHHHHHcch-----HHHHhhhhhhhhhhhhhHHHHHhHHHHHHhh
Confidence 3355544444444443 33333 343 899999999999987 89999999999999999999999998 4556
Q ss_pred cccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH
Q psy18014 100 SNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK 179 (323)
Q Consensus 100 ~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~ 179 (323)
-+..|...|++|.+.||++|+|.+--|+||..|+++.+|+++.++.+.|-..|++..|||||+|+..+||+|..+||.++
T Consensus 101 ~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr 180 (877)
T KOG1059|consen 101 HDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR 180 (877)
T ss_pred cCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhc--cCCChHHHHHHHHHHHHHhhhhhcccCCCCCC
Q psy18014 180 RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKF--TMKSPYATCMLIRIVCKLIEDQNAASGDTNWS 257 (323)
Q Consensus 180 ~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~--~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~ 257 (323)
.-++.+.+-|.|.||+|+.+|+++++|+.+.+|.++..|.+.|.+. ...+-|..+.+|++.+.+.+-+|... .|.
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg---KKL 257 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG---KKL 257 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh---hhh
Confidence 9999999999999999999999999999999998886666655421 23466999999999998877777653 445
Q ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHccc-----CCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhcC
Q psy18014 258 NSPLFDYLETCLRHKSETVVYEAAHAIVNLR-----RTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323 (323)
Q Consensus 258 ~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~-----~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~~ 323 (323)
.+.+.+++++ ....+++|||++|++... +.+.+....+++.|+.|+..+|+|+||+||-.|++
T Consensus 258 ieplt~li~s---T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 258 IEPITELMES---TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred hhHHHHHHHh---hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 5666666664 566799999999999872 23456789999999999999999999999987753
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.93 E-value=6e-08 Score=97.34 Aligned_cols=262 Identities=18% Similarity=0.209 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHH-HHHHhhcCCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFF-AMTKLFQSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAA 127 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~-~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~l 127 (323)
-.+||+.|+...=.--.+-|...+.. .+.|-+.++|+..+-+.-=.+..+. .++ +-.+.+.+.+=+.|++|+||-.
T Consensus 56 ~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~ 133 (526)
T PF01602_consen 56 LELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKK 133 (526)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHH
Confidence 34667777654321111122222222 3556689999988866665555554 344 4457888888899999999999
Q ss_pred HHHHhhCCC--chhhHHH-HHHHHHHhccCCChHHHHHHHHHHHhhhccCh----hHHHHHHHHHHHHhcCCChHHHHHH
Q psy18014 128 AIRALCSIT--DTTMIQA-IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP----DLVKRWVNEVQEALNSENVMVQYHA 200 (323)
Q Consensus 128 ALr~L~~i~--~~~~~~~-l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p----~~v~~~~~~l~~~l~d~~~~V~~~a 200 (323)
|+-++.++- .|+.++. +.+.+.+.+.|++|-|+.+|+.++..+ +.+| +++..+...+..++.+.+|.++...
T Consensus 134 A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 134 AALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHH
Confidence 999998884 5788887 799999999999999999999998888 4344 3466788888888899999999888
Q ss_pred HHHHHHHHhcChhhH--HHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHH
Q psy18014 201 LGLLYHIRKSDQLAV--TKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVV 277 (323)
Q Consensus 201 l~ll~~l~~~d~~~~--~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~ 277 (323)
+.++..+...++... ..+++.+.. ....++-.....++.+..+.+..+ ......+.+..++.++++-+.
T Consensus 213 l~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--------~~~~~~~~L~~lL~s~~~nvr 284 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--------LLQKAINPLIKLLSSSDPNVR 284 (526)
T ss_dssp HHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--------HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--------HHHhhHHHHHHHhhcccchhe
Confidence 888777665544444 344444321 012355566666677665522211 256778888888998888899
Q ss_pred HHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 278 YEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 278 ~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
|-+..++..+....+..+......+..+..++|+.+|..||+++.
T Consensus 285 ~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHh
Confidence 999999988875443333333344444444889999999998763
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.86 E-value=1.3e-07 Score=82.28 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred ChHHHhHHHHHhh--CCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH-HHHHHHHHhcCCChHHH
Q psy18014 121 EDLYRAAAIRALC--SITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-WVNEVQEALNSENVMVQ 197 (323)
Q Consensus 121 N~~ir~lALr~L~--~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-~~~~l~~~l~d~~~~V~ 197 (323)
||.+|.+|+.+|| .++-|.++++..+.+...|.|++|+||+.|+.++.+|...+.--++. ++..+-.++.|.|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6899999999999 88999999999999999999999999999999999999887766654 55777889999999999
Q ss_pred HHHHHHHHHHHhc-ChhhH----HHHHHHHhhc-cC-----CChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHH
Q psy18014 198 YHALGLLYHIRKS-DQLAV----TKLVAKLTKF-TM-----KSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLE 266 (323)
Q Consensus 198 ~~al~ll~~l~~~-d~~~~----~~lv~~L~~~-~~-----~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 266 (323)
..|..++.++... ++..+ ..++..|... ++ .+.---..+++++..++..+. ..+.+.+.+-
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~--------~~~~l~~kl~ 152 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDK--------QKESLVEKLC 152 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHH--------HHHHHHHHHH
Confidence 9999998888655 55444 3444444422 11 122223456666655544222 2466665444
Q ss_pred HHhc-CC---ChhHHHHHHHHH
Q psy18014 267 TCLR-HK---SETVVYEAAHAI 284 (323)
Q Consensus 267 ~~L~-~~---~~aV~~ea~k~i 284 (323)
..+. .. ++.+.--+..++
T Consensus 153 ~~~~~~~~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 153 QRFLNAVVDEDERVLRDILYCL 174 (178)
T ss_pred HHHHHHcccccHHHHHHHHHHH
Confidence 4333 33 444444444443
No 14
>PRK09687 putative lyase; Provisional
Probab=98.72 E-value=4.8e-06 Score=77.73 Aligned_cols=220 Identities=18% Similarity=0.099 Sum_probs=156.9
Q ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC---cchH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCchhh--HHHH
Q psy18014 71 TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA---EDVI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM--IQAI 144 (323)
Q Consensus 71 s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~---~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~--~~~l 144 (323)
..+|..+.+++.++|...|+.+=-.+..++... ++++ +..+.+ ++|+++.||+.|..+|+.+..+.. ....
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~---~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a 129 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA---LEDKSACVRASAINATGHRCKKNPLYSPKI 129 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH---hcCCCHHHHHHHHHHHhcccccccccchHH
Confidence 346777888999999999999888888886532 2232 122221 378899999999999999976543 3445
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhh
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTK 224 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~ 224 (323)
...+...+.|+++.||..|+.++.++- ++ +.++.+..++.|.|+.|-..|...|-.+...++.....|+..|..
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~----~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D 203 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIN--DE----AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD 203 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccC--CH----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Confidence 566778899999999999999997762 34 355677788889999999999888877754455555556666632
Q ss_pred ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHH
Q psy18014 225 FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQL 304 (323)
Q Consensus 225 ~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~ 304 (323)
.++.....-++-+.++ . ...-++.|...|++.+ +..+++.++=.++. ..++..|..
T Consensus 204 ---~~~~VR~~A~~aLg~~---~----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~------~~a~p~L~~ 259 (280)
T PRK09687 204 ---KNEEIRIEAIIGLALR---K----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD------KTLLPVLDT 259 (280)
T ss_pred ---CChHHHHHHHHHHHcc---C----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC------HhHHHHHHH
Confidence 2556666666666543 1 1334455555555544 77788888776654 268888888
Q ss_pred Hhc-CCChhhHHHHHhhhcC
Q psy18014 305 FCS-SPKPVLRFAAVRTLNK 323 (323)
Q Consensus 305 ~L~-s~~~niry~aL~~l~~ 323 (323)
++. .+|+.++-.|+..+++
T Consensus 260 l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHhhCCChhHHHHHHHHHhc
Confidence 886 8899999999988875
No 15
>PRK09687 putative lyase; Provisional
Probab=98.71 E-value=3.9e-06 Score=78.30 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=149.6
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhh-HHHHHHHHHHh-ccCC
Q psy18014 78 TKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM-IQAIERYMKQA-IVDR 155 (323)
Q Consensus 78 vkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~-~~~l~~~v~~~-L~d~ 155 (323)
++++..+|..++.-.-..+..++ .++++-.+ .+=++|+|+.+|..|.+.|+.++.+.- .....+.+... +.|+
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~--~~~~~~~l---~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~ 103 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRG--GQDVFRLA---IELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK 103 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC--cchHHHHH---HHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Confidence 45568888888777666666554 23343222 223678999999999999999997542 23445555555 7899
Q ss_pred ChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHH
Q psy18014 156 NSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCM 235 (323)
Q Consensus 156 ~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~ 235 (323)
++.||..|+-+++++....+.-..++.+.+..++.|.++.|.+.++..|-.+. ++..+.-|+.-|.. .+++....
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DEAAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhcC---CCHHHHHH
Confidence 99999999999999865444334466777888889999999999888776554 45555566665542 35554444
Q ss_pred HHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHH
Q psy18014 236 LIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRF 315 (323)
Q Consensus 236 llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry 315 (323)
-+..+..+ .. ..+...+.|...|...+..|..+|+..+-.+.. ..++..|...|.+++ +++
T Consensus 179 A~~aLg~~---~~--------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 179 AAFALNSN---KY--------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHHhcC---CC--------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc--hHH
Confidence 44444322 11 135667788888889999999999999887754 257777777788654 677
Q ss_pred HHHhhh
Q psy18014 316 AAVRTL 321 (323)
Q Consensus 316 ~aL~~l 321 (323)
.|...|
T Consensus 240 ~a~~AL 245 (280)
T PRK09687 240 LIIEAA 245 (280)
T ss_pred HHHHHH
Confidence 776654
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.53 E-value=2e-05 Score=84.68 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=72.9
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhc
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L 152 (323)
....+++++..+|..+|+..=-.+..+++..+..- .+.+=+++++|.+|..|++.|+.+...+. ..+.+.|
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~----~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----~~l~~~L 723 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP----ALRDHLGSPDPVVRAAALDVLRALRAGDA-----ALFAAAL 723 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH----HHHHHhcCCCHHHHHHHHHHHHhhccCCH-----HHHHHHh
Confidence 44556777888888888855555655543221111 22223455788888888888887764332 2345677
Q ss_pred cCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
.|++|.||..|+.++.++- .+ +.+..++.|.++.|..++...|..+...
T Consensus 724 ~D~d~~VR~~Av~aL~~~~--~~-------~~l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 724 GDPDHRVRIEAVRALVSVD--DV-------ESVAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred cCCCHHHHHHHHHHHhccc--Cc-------HHHHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 8888888888888877751 11 1233456666666666665555555443
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=5.9e-05 Score=81.17 Aligned_cols=207 Identities=17% Similarity=0.121 Sum_probs=147.5
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCC
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRN 156 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~ 156 (323)
+...+.++|..+|...--.+......... .|.+=+.|+++.+|..|+++|+.+..+ +.+..++.|.+
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~~~~~------~l~~~L~D~d~~VR~~Av~aL~~~~~~-------~~l~~~l~D~~ 755 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRAGDAA------LFAAALGDPDHRVRIEAVRALVSVDDV-------ESVAGAATDEN 755 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCCHH------HHHHHhcCCCHHHHHHHHHHHhcccCc-------HHHHHHhcCCC
Confidence 45667889999988887666665432221 344567899999999999999998764 34678899999
Q ss_pred hHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHH
Q psy18014 157 SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCML 236 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~l 236 (323)
+.||..|+.++..+....+.. .+.+..++.|.|+.|..+|+..|-.+.... .....++..|.. .++.....-
T Consensus 756 ~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~l~~aL~d---~d~~VR~~A 827 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAAATAALRA---SAWQVRQGA 827 (897)
T ss_pred HHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHHHHHHhcC---CChHHHHHH
Confidence 999999999999997655533 345668889999999999988877764321 111234444431 133344334
Q ss_pred HHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHH
Q psy18014 237 IRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFA 316 (323)
Q Consensus 237 lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~ 316 (323)
++.+..+ . ...-...|.+.|+..+..|..+|+.++-.+.. + ..+...|...++.+|+.+|=.
T Consensus 828 a~aL~~l---~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~----~~a~~~L~~al~D~d~~Vr~~ 889 (897)
T PRK13800 828 ARALAGA---A----------ADVAVPALVEALTDPHLDVRKAAVLALTRWPG-D----PAARDALTTALTDSDADVRAY 889 (897)
T ss_pred HHHHHhc---c----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccCC-C----HHHHHHHHHHHhCCCHHHHHH
Confidence 4444433 1 12334777777889999999999999988732 1 246777788899999999999
Q ss_pred HHhhhc
Q psy18014 317 AVRTLN 322 (323)
Q Consensus 317 aL~~l~ 322 (323)
|.+.|+
T Consensus 890 A~~aL~ 895 (897)
T PRK13800 890 ARRALA 895 (897)
T ss_pred HHHHHh
Confidence 998875
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.13 E-value=0.0017 Score=65.54 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=168.5
Q ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchH-h-----hhhhhhhhcCCCChHHHhHHHHHhhCCCch-hhHH
Q psy18014 70 ATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVI-I-----VTSSLTKDMTGKEDLYRAAAIRALCSITDT-TMIQ 142 (323)
Q Consensus 70 ~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~l-L-----~iNsl~kDl~~~N~~ir~lALr~L~~i~~~-~~~~ 142 (323)
...+...+..++.+++..+|+++--.+..+...++... + +...+..=+.+++..+...|.++|.++... .-.+
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45566667888999999999998888888765544421 1 123456667899999999999999998543 3444
Q ss_pred HH-----HHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH---H--HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 143 AI-----ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK---R--WVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 143 ~l-----~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~---~--~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
.+ ...+++.+...++.||-.+.-.+.++...+++..+ + +++.+-+.+.+.|..|+.+++.++.++... +
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h
Confidence 55 77788888888999999999999999999988765 2 778888888899999999999999999773 2
Q ss_pred hhH---------HHHHHHHhhccCCCh----HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHH
Q psy18014 213 LAV---------TKLVAKLTKFTMKSP----YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYE 279 (323)
Q Consensus 213 ~~~---------~~lv~~L~~~~~~~~----~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~e 279 (323)
... .+++..+.. .-.+| +...-.+++.+....-+|.. .-...+.|++.+...+.+.+.....-
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~-~~~dp~~~~~~l~g~~~f~g~la~~~~~~---v~~~~p~~~~~l~~~~~s~d~~~~~~ 309 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQD-SEEDPRLSSLLLPGRMKFFGNLARVSPQE---VLELYPAFLERLFSMLESQDPTIREV 309 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhc-cccCCcccchhhhhHHHHHHHHHhcChHH---HHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 222 333333321 22344 33334445555442212321 00124677777888778888755555
Q ss_pred HHHHHHcccCCC----------HHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 280 AAHAIVNLRRTS----------ARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 280 a~k~i~~l~~~~----------~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
|+-++=.+++.. ......+....+....++.+++|-.+|..++
T Consensus 310 A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 555554454321 1223456777777788888899988888764
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.12 E-value=1.8e-05 Score=59.89 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=62.6
Q ss_pred hhhhhhc-CCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 111 SSLTKDM-TGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 111 Nsl~kDl-~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
..|.+-+ +|+|+.+|..|+++|+.+..++. .+.+.+.+.|++|.||..|+.++.++= .+ +.++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~--~~----~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIG--DP----EAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCH--HH----HTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--CH----HHHHHHHHHH
Confidence 4566777 89999999999999999998865 455556668999999999999999872 23 3556666666
Q ss_pred cC-CChHHHHHHHHH
Q psy18014 190 NS-ENVMVQYHALGL 203 (323)
Q Consensus 190 ~d-~~~~V~~~al~l 203 (323)
.+ .+..|..+|...
T Consensus 72 ~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 72 QDDDDEVVREAAAEA 86 (88)
T ss_dssp TC-SSHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhh
Confidence 65 455666666543
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=98.10 E-value=0.0019 Score=67.89 Aligned_cols=256 Identities=13% Similarity=0.144 Sum_probs=156.1
Q ss_pred HHHHHHHHHHH--cCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC-cc-hHhhhhhhhhhcCCCChHHH
Q psy18014 50 HILTKILYLIN--QGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA-ED-VIIVTSSLTKDMTGKEDLYR 125 (323)
Q Consensus 50 ~~l~kli~~~~--~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-~~-~lL~iNsl~kDl~~~N~~ir 125 (323)
--+||++|+.. .|+..++. +.-.--.+.|=+.++|+.+|-+ +++.++... ++ +=.++..+++=+.|++|+||
T Consensus 82 ~elKKLvYLYL~~ya~~~pel-alLaINtl~KDl~d~Np~IRaL---ALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVR 157 (746)
T PTZ00429 82 LELKKLVYLYVLSTARLQPEK-ALLAVNTFLQDTTNSSPVVRAL---AVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVR 157 (746)
T ss_pred HHHHHHHHHHHHHHcccChHH-HHHHHHHHHHHcCCCCHHHHHH---HHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHH
Confidence 45778887766 45433331 1112223566678899888865 455555543 33 33578889999999999999
Q ss_pred hHHHHHhhCCC--chhhHH--HHHHHHHHhccCCChHHHHHHHHHHHhhhcc----------------------------
Q psy18014 126 AAAIRALCSIT--DTTMIQ--AIERYMKQAIVDRNSAVSSAAVVSIFHMTKH---------------------------- 173 (323)
Q Consensus 126 ~lALr~L~~i~--~~~~~~--~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~---------------------------- 173 (323)
-.|.=++.++- .|++++ .+.+.+.+.|.|++|-|..+|+.++..+...
T Consensus 158 KtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi 237 (746)
T PTZ00429 158 KTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQL 237 (746)
T ss_pred HHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHH
Confidence 99999988873 556653 5677888899999999999998876655321
Q ss_pred ------------ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-ChhhH----HHHHHHHhhccCCChHHHHHH
Q psy18014 174 ------------SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS-DQLAV----TKLVAKLTKFTMKSPYATCML 236 (323)
Q Consensus 174 ------------~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~-d~~~~----~~lv~~L~~~~~~~~~~~~~l 236 (323)
+.+..+.+++.+...+...|+.|++.|+.++..+... ++... .++..-|....-.+|-.|-..
T Consensus 238 ~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyva 317 (746)
T PTZ00429 238 YILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIV 317 (746)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHH
Confidence 1244567889999999999999999998876655432 22111 111111100001122222222
Q ss_pred HHHHHHHhhh-----------------hhccc----------CCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccC
Q psy18014 237 IRIVCKLIED-----------------QNAAS----------GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 237 lr~~~~~~~~-----------------~~~~~----------~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~ 289 (323)
++-+..+... ||..- -.+......+++-|..+....+..++-+++++|-.+..
T Consensus 318 Lr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 318 CKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 2111111000 11000 00011245566666666677788899999999887764
Q ss_pred CCHHhHhhHHHHHHHHhcCC
Q psy18014 290 TSARELAPAVSVLQLFCSSP 309 (323)
Q Consensus 290 ~~~~~~~~~~~~l~~~L~s~ 309 (323)
..+.....+++.|..++..+
T Consensus 398 k~~~~a~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 398 KVDSVAPDCANLLLQIVDRR 417 (746)
T ss_pred hChHHHHHHHHHHHHHhcCC
Confidence 44566777888888888754
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.92 E-value=0.00023 Score=63.83 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=112.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcC--CCCCchhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHhccc-----CcchHh
Q psy18014 39 NDTPVNPKKCTHILTKILYLINQG--EQLGTQEATDAF---FAMTKLFQSKDVILRRMVYLGIKELSNI-----AEDVII 108 (323)
Q Consensus 39 ~~~~~~~~k~~~~l~kli~~~~~G--~~~~~~e~s~lf---~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-----~~~~lL 108 (323)
+++..+=.++.++|.++-.+..-| .++.+.....+. ..+++.+.+.+-.+=+-....+..++.. .+.+-.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 344456666668898888888777 233222222222 3556677777776767777777666432 233456
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchhh-HHHH-HHHHHHhccCCChHHHHHHHHHHHhhhccCh---hH------
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTTM-IQAI-ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP---DL------ 177 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~-~~~l-~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p---~~------ 177 (323)
.++.|.+=+.++|..+|..|-.+|..+...-- ...+ ...+..+..|++|-||..++.++..+....+ +.
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 78899999999999999998888777655422 3444 7888999999999999999999999887777 22
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy18014 178 VKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAK 221 (323)
Q Consensus 178 v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~ 221 (323)
++.+.+.+..++.|.++.|-.+|..++..+...-+.....++..
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~ 218 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSM 218 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhc
Confidence 34578889999999999999999888777766544444444433
No 22
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.80 E-value=0.0036 Score=59.36 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=86.6
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhc
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L 152 (323)
....+.+.+.++|..+|.-...++..++ .--++..+.+-+.|.++.+|..|..+|+.+..++-++.+.+.+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-----SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc--
Confidence 3445678889999999988888866552 344667788889999999999999999999999999998888777
Q ss_pred cCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHH
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMV 196 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V 196 (323)
|.+.+||.+|+.++.++..... +..+.+.+.|.+..+
T Consensus 117 -d~~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~ 153 (335)
T COG1413 117 -DENEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGS 153 (335)
T ss_pred -CCcHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhh
Confidence 9999999999999999854332 444555666665433
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.67 E-value=0.0084 Score=60.59 Aligned_cols=241 Identities=17% Similarity=0.200 Sum_probs=152.6
Q ss_pred HHhhcCCCchhHHHHHHHHHHhccc-Ccc-hH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCch-hh------HHHHHHH
Q psy18014 78 TKLFQSKDVILRRMVYLGIKELSNI-AED-VI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDT-TM------IQAIERY 147 (323)
Q Consensus 78 vkl~~s~d~~lKkl~Ylyl~~~~~~-~~~-~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~-~~------~~~l~~~ 147 (323)
..++++.+.+.--++.-.+..+.+. ... .. =....|++=++|+||.||.+|++.++++... +- -..+.+.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 3445666655555555445555332 222 22 2466788999999999999999999886432 22 1567789
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHH-----H
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW-----VNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVT-----K 217 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~-----~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~-----~ 217 (323)
|..++.|++..|.+.|+-++.++....+.+ +.+ ...+.+++...|..+.+....++..+....+.... .
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 999999999999999999999998754433 333 77888888887888888888888777665544431 1
Q ss_pred HHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhc----CC--ChhHHHHHHHHHHcccCC
Q psy18014 218 LVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLR----HK--SETVVYEAAHAIVNLRRT 290 (323)
Q Consensus 218 lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~--~~aV~~ea~k~i~~l~~~ 290 (323)
+++.+.. ..-.+...|.-.+.++..+.. .+.... --....+++.|...+. .+ +...+...++.+-.+...
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~--yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQ--YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHH--HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 3333321 112577888888888776533 221100 0001223333444432 22 233555666766666542
Q ss_pred C-HH---hHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 291 S-AR---ELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 291 ~-~~---~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+ .. .+......+..++.+.|+..+-+|+.++.
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 2 22 34566677778889999999999998763
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.53 E-value=0.017 Score=66.17 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=166.6
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcch---H---hhhhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhH-----HH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAEDV---I---IVTSSLTKDMTGKEDLYRAAAIRALCSITD--TTMI-----QA 143 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~---l---L~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~-----~~ 143 (323)
+|.++.+.+...+.=.-..+..+.+.+++. + -.++.|.+-|.++++.++-.|++++++|.. ++-. ..
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 466677777777777667777676554332 2 257889999999999999999999988853 3333 24
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhhccChh---HHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHh-cChhhHHH
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD---LVK--RWVNEVQEALNSENVMVQYHALGLLYHIRK-SDQLAVTK 217 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~---~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~-~d~~~~~~ 217 (323)
..+++.+.|.++++.+++.|+-++..+....++ ++. ..++-+-+++.+.++.++-.|+..++.+.. .+...+..
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 578899999999999999999999998864443 332 256678888999999888888777776643 44444555
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhhhhhccc-CCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHH---
Q psy18014 218 LVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS-GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAR--- 293 (323)
Q Consensus 218 lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~--- 293 (323)
++..|. -.++-.+...++.+..++..-...+ .........-++.|..+|++.++.+.-+|+.++..+....++
T Consensus 569 Lv~LLl---sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 569 LTALLL---GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHhc---CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 665553 2356566667777654432111000 000001234678888889999999999999999888754333
Q ss_pred --hHhhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 294 --ELAPAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 294 --~~~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
....++.++-.+|++++..++--|-..
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~A 674 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARA 674 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence 235778888888888887777665544
No 25
>KOG2171|consensus
Probab=97.46 E-value=0.095 Score=56.43 Aligned_cols=282 Identities=16% Similarity=0.215 Sum_probs=183.8
Q ss_pred HHHHHHHH-H-HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc---
Q psy18014 28 KTAVLQEA-R-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI--- 102 (323)
Q Consensus 28 k~~i~qe~-~-~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~--- 102 (323)
+.++.+.+ . .+.++..+ .|..+-++|+.+..++ ..+ .+.++-.-+.++..|.|...+-+..+-+..+...
T Consensus 77 ~~siks~lL~~~~~E~~~~---vr~k~~dviAeia~~~-l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPS---VRHKLADVIAEIARND-LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred HHHHHHHHHHHHHhccchH---HHHHHHHHHHHHHHhc-ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 55555553 3 33343222 2356778888888764 222 4555666667778999999999999988888553
Q ss_pred --CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCch------------hhHHHHHHHHHHhccCCChHHHHHHHHHHH
Q psy18014 103 --AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT------------TMIQAIERYMKQAIVDRNSAVSSAAVVSIF 168 (323)
Q Consensus 103 --~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~------------~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~ 168 (323)
.+-.--..+-|.+=++|+..-||..|+|+++.+... .+++.+..-..+.+.+.+...-+.+.-++.
T Consensus 152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 122224567788888888777999999999876432 235556666677777888888899999988
Q ss_pred hhhccChhHHHHHHHHHHHH----hcC--CChHHHHHHHHHHHHHHhcChh-------hHHHHHHHHh--------hccC
Q psy18014 169 HMTKHSPDLVKRWVNEVQEA----LNS--ENVMVQYHALGLLYHIRKSDQL-------AVTKLVAKLT--------KFTM 227 (323)
Q Consensus 169 kl~~~~p~~v~~~~~~l~~~----l~d--~~~~V~~~al~ll~~l~~~d~~-------~~~~lv~~L~--------~~~~ 227 (323)
-+....|.+++..+..+-+. ..+ -+..+-..|+-++.-+.+.-+. -...++..+. ..+|
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 88888898888765554332 222 2456666676655444333221 1223333221 1122
Q ss_pred CC-----------h-HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCH---
Q psy18014 228 KS-----------P-YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSA--- 292 (323)
Q Consensus 228 ~~-----------~-~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~--- 292 (323)
.+ | -.-...|..++..+ .|. .....+++.+...|++++-.-...+..+|-.+.....
T Consensus 312 ~~~d~~ded~~~~~~~~A~~~lDrlA~~L--~g~------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRAAEQALDRLALHL--GGK------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred ccccccccccccCcHHHHHHHHHHHHhcC--Chh------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 11 1 12223444333222 222 2467888889999999998888888888888765332
Q ss_pred -HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 293 -RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 293 -~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..+.+..+.+..+|+.+.|.+||+|+..+.
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999998775
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.34 E-value=0.00089 Score=60.00 Aligned_cols=133 Identities=13% Similarity=0.212 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCc-chHhhhhhhhhhcCCCChHHHhHH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAE-DVIIVTSSLTKDMTGKEDLYRAAA 128 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~-~~lL~iNsl~kDl~~~N~~ir~lA 128 (323)
..++.+... .|..|.. ....+++.+++.+.+++-.++.-+.-.+..+....+ ..-+....+..-++|.||.+|..+
T Consensus 75 ~~l~~l~~~--l~~~~~~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~ 151 (228)
T PF12348_consen 75 QLLSDLARQ--LGSHFEP-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREEC 151 (228)
T ss_dssp HHHHHHHHH--HGGGGHH-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHH--HhHhHHH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 445444433 3344543 256678889999999999999999999998877644 333445667777899999999999
Q ss_pred HHHhhCCCc-----------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHH
Q psy18014 129 IRALCSITD-----------TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEV 185 (323)
Q Consensus 129 Lr~L~~i~~-----------~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l 185 (323)
+..+..+.. ....+.+.+.+.+++.|++|-||+.|--++..++...|+-.+.++..+
T Consensus 152 ~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l 219 (228)
T PF12348_consen 152 AEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSML 219 (228)
T ss_dssp HHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-------
T ss_pred HHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcc
Confidence 987765521 112577999999999999999999999999999999998877655443
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.27 E-value=0.0012 Score=49.68 Aligned_cols=82 Identities=24% Similarity=0.345 Sum_probs=59.7
Q ss_pred HHHhh-cCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC-
Q psy18014 77 MTKLF-QSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD- 154 (323)
Q Consensus 77 vvkl~-~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d- 154 (323)
+++.+ .++|..+|.-...++..+.. +++ ++.|..=++|+||.+|-.|+++|+.+++++.++.+.+ .+.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~--~~~---~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L~~----~l~~~ 74 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGD--PEA---IPALIELLKDEDPMVRRAAARALGRIGDPEAIPALIK----LLQDD 74 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTH--HHH---HHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHHHH----HHTC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC--HhH---HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHH----HHcCC
Confidence 35656 78889999887777775532 223 4445555578999999999999999998776665544 4544
Q ss_pred CChHHHHHHHHHH
Q psy18014 155 RNSAVSSAAVVSI 167 (323)
Q Consensus 155 ~~~yVRk~A~~~~ 167 (323)
.+..||..|+-++
T Consensus 75 ~~~~vr~~a~~aL 87 (88)
T PF13646_consen 75 DDEVVREAAAEAL 87 (88)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhc
Confidence 5678899888775
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.26 E-value=0.0016 Score=51.24 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=70.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCch--h----hHH-HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH---
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDT--T----MIQ-AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK--- 179 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~--~----~~~-~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~--- 179 (323)
++.+.+=+.++|+.+|-.|+.+++++... + +++ .+.+.+.+.+.|+++.|++.|+.++..+....++..+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 44555555677788888888888887652 2 233 5566777888889999999999999999887655333
Q ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 180 --RWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 180 --~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
.+++.+.+.+.+.+..+..+++.++..+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2566777788888877877777666544
No 29
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.25 E-value=0.023 Score=49.25 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 156 NSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 156 ~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
+|-||.+|+.+++-+...+|.+++.|.+.+..+|.|.+|.|-.+|+.++..+-..|-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ 57 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM 57 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc
Confidence 688999999999999999999999999999999999999999999888877765553
No 30
>KOG1078|consensus
Probab=97.23 E-value=0.014 Score=60.36 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=163.3
Q ss_pred HHHhhhhcCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHH
Q psy18014 11 QQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRR 90 (323)
Q Consensus 11 ~~~~~~~~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKk 90 (323)
++-.-..-+++++.+-|+-.+.+++..+ ..+..+..|-.+++.+++.+-.|.-++-.....-++.......|++-.+.+
T Consensus 81 Rr~vYl~Ikels~isedviivtsslmkD-~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss 159 (865)
T KOG1078|consen 81 RRMVYLAIKELSKISEDVIIVTSSLMKD-MTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSS 159 (865)
T ss_pred HHHHHHHHhhccccchhhhhhhHHHHhh-ccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHH
Confidence 3334344566777888888888888777 555555555599999999887775443223333333333444444444444
Q ss_pred HHHH----------------------------HHHHhcccCcchHhhhhhhhhhcCC---CChHHHhHHHHHhhCCCchh
Q psy18014 91 MVYL----------------------------GIKELSNIAEDVIIVTSSLTKDMTG---KEDLYRAAAIRALCSITDTT 139 (323)
Q Consensus 91 l~Yl----------------------------yl~~~~~~~~~~lL~iNsl~kDl~~---~N~~ir~lALr~L~~i~~~~ 139 (323)
+.|+ ++..+.....---++.|.+.+-..+ .||+-+++-+|..+.....+
T Consensus 160 ~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~ 239 (865)
T KOG1078|consen 160 YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN 239 (865)
T ss_pred hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc
Confidence 4443 3333322211123444544444433 47888888888887776554
Q ss_pred --hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH--
Q psy18014 140 --MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV-- 215 (323)
Q Consensus 140 --~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~-- 215 (323)
...++.+.+-.++.|++..|-=.|+.++..++..++..+...+..++-.+....+.+.++|+..|+++....|...
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 2347889999999999999999999999999988888776778888888888889999999999999876555432
Q ss_pred -HHHHHHHhh--ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhc---CCChhHHHHHHHHHHccc
Q psy18014 216 -TKLVAKLTK--FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLR---HKSETVVYEAAHAIVNLR 288 (323)
Q Consensus 216 -~~lv~~L~~--~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~aV~~ea~k~i~~l~ 288 (323)
..=+..|.. ++..+.++...+++.. .+. ..+.+++-+..+.. -..-.|+.+|+++++...
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG-------~e~------sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f 385 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTG-------TES------SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF 385 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhc-------chh------HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc
Confidence 122222211 1112223333333332 111 25666666555543 244567777777776653
No 31
>KOG0414|consensus
Probab=97.23 E-value=0.0036 Score=67.04 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHhh----cCCCchhHHHHHHHHHHhccc----Ccc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCC--c
Q psy18014 69 EATDAFFAMTKLF----QSKDVILRRMVYLGIKELSNI----AED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT--D 137 (323)
Q Consensus 69 e~s~lf~~vvkl~----~s~d~~lKkl~Ylyl~~~~~~----~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~--~ 137 (323)
.++.+-+-|++++ -..|+++..-.|+++..+--. .+. +=+.++.+.| +|||.||+++.=.+|.+. -
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhhhc
Confidence 4455556678887 557799999999999888332 233 3345555554 999999999999999864 5
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH--
Q psy18014 138 TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV-- 215 (323)
Q Consensus 138 ~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~-- 215 (323)
|.+++...+++-+-|.|.++-|||+|++.+.||+..+.=-|+.-+.++--++.|.|+.+-.-|-...+|+.... ..+
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iyn 1071 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYN 1071 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhh
Confidence 79999999999999999999999999999999998776667778888999999999999888888899997654 222
Q ss_pred --HHHHHHHh
Q psy18014 216 --TKLVAKLT 223 (323)
Q Consensus 216 --~~lv~~L~ 223 (323)
..++.+|+
T Consensus 1072 lLPdil~~Ls 1081 (1251)
T KOG0414|consen 1072 LLPDILSRLS 1081 (1251)
T ss_pred hchHHHHhhc
Confidence 55555554
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.20 E-value=0.026 Score=51.97 Aligned_cols=190 Identities=17% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCChHHHhHHHHHhhCCCchhhHHHHH------HHHHHhccCCChHHHHHHHHHHHhhhccC--hhHHHHHHHHHHHHhc
Q psy18014 119 GKEDLYRAAAIRALCSITDTTMIQAIE------RYMKQAIVDRNSAVSSAAVVSIFHMTKHS--PDLVKRWVNEVQEALN 190 (323)
Q Consensus 119 ~~N~~ir~lALr~L~~i~~~~~~~~l~------~~v~~~L~d~~~yVRk~A~~~~~kl~~~~--p~~v~~~~~~l~~~l~ 190 (323)
+.+|.+++.|+-+|++...-...+.+. ..|...+.+++|-||.+|+.|+..+-... .+.++..++.+-+.+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 346888888888888877766665554 44778888888888888888888765433 3455666666655332
Q ss_pred C--CChHHHHHHHHHHHHHHhcCh--hhH----HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccC--CCCCCchh
Q psy18014 191 S--ENVMVQYHALGLLYHIRKSDQ--LAV----TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASG--DTNWSNSP 260 (323)
Q Consensus 191 d--~~~~V~~~al~ll~~l~~~d~--~~~----~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~--~~~~~~~~ 260 (323)
. -|..++.+++.+|..+.-.+. ..+ ..+++-|. ..+.-.+.+.++.+..+-. +|...+ -..+....
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~---~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~ 179 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS---SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSS 179 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH---cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhH
Confidence 2 366788888888776643321 111 33333333 2366777888888765522 222100 00001112
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHcccCC-------------C-HHh------HhhHHHHHHHHhcCCChhhHH
Q psy18014 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRT-------------S-ARE------LAPAVSVLQLFCSSPKPVLRF 315 (323)
Q Consensus 261 ~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-------------~-~~~------~~~~~~~l~~~L~s~~~niry 315 (323)
|+.+.. ++.+..++++++..+-.+... + ..+ .......++.+..++|+++|-
T Consensus 180 ~~~Lf~---~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~ 251 (254)
T PF04826_consen 180 FLSLFN---SSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE 251 (254)
T ss_pred HHHHHc---cCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence 222221 244678888888777666310 0 111 256788888999999999973
No 33
>KOG2171|consensus
Probab=97.07 E-value=0.43 Score=51.58 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHH-HHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHH
Q psy18014 87 ILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAI-RALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAV 164 (323)
Q Consensus 87 ~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lAL-r~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~ 164 (323)
..++++-..+....+..++ -..-.-.+--|..+.|+.+---|| |.-+++.++.+++.+.+.+-+.+.+.+.+-|++|+
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5555655555555443333 111111233344333444333344 44567888999999999999999999999999999
Q ss_pred HHHHhhhccChhHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHH---------HHHHHHhhccCCChH
Q psy18014 165 VSIFHMTKHSPDLVKR----WVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVT---------KLVAKLTKFTMKSPY 231 (323)
Q Consensus 165 ~~~~kl~~~~p~~v~~----~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~---------~lv~~L~~~~~~~~~ 231 (323)
+++.-+-...++.++. .++-+-..++|.+|.|.++|+.++..+..+=...+. -|+..+. ...++-
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld--~~~~~r 447 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD--STQNVR 447 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc--ccCchH
Confidence 9999999988888764 455566678899999999999998888754332221 1222222 122332
Q ss_pred H----HHHHHHHHHHHhhhhhcccCCCCCCchhHHH-HHHHHhcCCChhHHHHHHHHHHcccCCC----HHhHhhHHHHH
Q psy18014 232 A----TCMLIRIVCKLIEDQNAASGDTNWSNSPLFD-YLETCLRHKSETVVYEAAHAIVNLRRTS----ARELAPAVSVL 302 (323)
Q Consensus 232 ~----~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~~~~aV~~ea~k~i~~l~~~~----~~~~~~~~~~l 302 (323)
. -+-++.+.....++ .. .+..+.+++ .+.-.++++.+-|.=.++-+|=...... ...+.+.+..|
T Consensus 448 V~ahAa~al~nf~E~~~~~--~l----~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKS--IL----EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLL 521 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHH--HH----HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 2 22233332211110 00 012344444 3334456666666666677766654321 23578999999
Q ss_pred HHHhcCCC-hhhHH
Q psy18014 303 QLFCSSPK-PVLRF 315 (323)
Q Consensus 303 ~~~L~s~~-~niry 315 (323)
..+|.+.+ -+.|-
T Consensus 522 ~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRE 535 (1075)
T ss_pred HHHHhCCCchhhHH
Confidence 99999765 34443
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.92 E-value=0.017 Score=45.28 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
+.+.+.+.+.+.++++|..|+.|+..+....|+... ..++.+.+++.+.|+.|..+|+.++..+....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 667788888899999999999999999987766554 356778889999999999999999888876543
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.89 E-value=0.007 Score=47.42 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH----HHHHHHHHHHhcCCChHHHHHHHHH
Q psy18014 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV----KRWVNEVQEALNSENVMVQYHALGL 203 (323)
Q Consensus 137 ~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v----~~~~~~l~~~l~d~~~~V~~~al~l 203 (323)
..+..+.+.++|..++.|+++-||-.||-+++.+.+..++.+ .+.++.+-.++.|.|+.|..+|-.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 557788999999999999999999999999999998776544 3567778889999999999888544
No 36
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.83 E-value=0.45 Score=55.15 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=157.3
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCc--hh---hH
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSITD--TT---MI 141 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~---~~ 141 (323)
....+++++.+.+...++.+.-.+.+++..+++ ++. ++..|.+=+.++++.+|-.|..+|+++.. ++ ++
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 445678899999999999998888888765543 222 35567778889999999999999999874 22 33
Q ss_pred H--HHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh---c-----
Q psy18014 142 Q--AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK---S----- 210 (323)
Q Consensus 142 ~--~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~---~----- 210 (323)
. ...+++.+.|.+.++-+++.|+-++..+.... ++.+ +.+-+++...++.+..+++..+..+.. .
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 2 35678899999999999999999999997543 4444 334566777777777777665533311 1
Q ss_pred ----ChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHc
Q psy18014 211 ----DQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN 286 (323)
Q Consensus 211 ----d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~ 286 (323)
+...+..|+.-|.. .++-.+-.-..++..+....+..- ..-.....+.-+...|++++..+..||+.++.+
T Consensus 603 ~g~~~~ggL~~Lv~LL~s---gs~~ikk~Aa~iLsnL~a~~~d~~--~avv~agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSS---SKEETQEKAASVLADIFSSRQDLC--ESLATDEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred HhhhccccHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCChHHH--HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 11123444444432 233333333333333322111100 000012234445556778999999999999998
Q ss_pred ccCCC--HH---hH-hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 287 LRRTS--AR---EL-APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 287 l~~~~--~~---~~-~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+.... .+ .. .-++.+|-.+|+++|..++-.|+..|.
T Consensus 678 L~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa 719 (2102)
T PLN03200 678 LSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA 719 (2102)
T ss_pred HHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 87321 11 12 457999999999999999999888763
No 37
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0093 Score=61.02 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=117.5
Q ss_pred HHHHHhhcC----CCchhHHHHHHHHHHhc----ccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCch--hhHHH
Q psy18014 75 FAMTKLFQS----KDVILRRMVYLGIKELS----NIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT--TMIQA 143 (323)
Q Consensus 75 ~~vvkl~~s----~d~~lKkl~Ylyl~~~~----~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~--~~~~~ 143 (323)
+.|..++.+ +|.++.+-.|+.+..+- +.-.+ .=+.|-++. .+|||-||++|.-.|+.+..- ..++.
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcfN~~~de 971 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCFNTTADE 971 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hCCCcceeccceeeccccceehhhhhHH
Confidence 346666777 89999999999877662 22233 223443444 399999999999888877643 67788
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHH---H
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLV---A 220 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv---~ 220 (323)
...++-+-|.|.+..|||+|.+.+.-++....=-|+.-...+-.+|.|.|..+---|.-++.++...|..-+...+ .
T Consensus 972 ~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidifs 1051 (1128)
T COG5098 972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIFS 1051 (1128)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 8889999999999999999999999888665555666677788889999988877777778888766655554444 4
Q ss_pred HHhhccCCChHHHHHHHHHHHHHh
Q psy18014 221 KLTKFTMKSPYATCMLIRIVCKLI 244 (323)
Q Consensus 221 ~L~~~~~~~~~~~~~llr~~~~~~ 244 (323)
.+......+..---.+|+++..+.
T Consensus 1052 ~ls~~ae~g~e~fk~II~FLt~fI 1075 (1128)
T COG5098 1052 TLSSDAENGQEPFKLIIGFLTDFI 1075 (1128)
T ss_pred HcCchhhcCCCcHHHHHHHHHHHH
Confidence 443221111111225777777664
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.59 E-value=0.0087 Score=41.27 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=38.0
Q ss_pred hHHHhHHHHHhhCCCc------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhh
Q psy18014 122 DLYRAAAIRALCSITD------TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHM 170 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~------~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl 170 (323)
|.+|..|+.+|+.+.. ....+.+.+.+...|.|.++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5688889999987651 234567788888888899999999999888654
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.52 E-value=0.0039 Score=38.09 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhhc
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMTK 172 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~~ 172 (323)
+.+.+.+++.|++|.||.+|+.|+..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999998865
No 40
>KOG1062|consensus
Probab=96.51 E-value=0.52 Score=49.30 Aligned_cols=222 Identities=15% Similarity=0.205 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc----hH-hhhhhhhhhcCCC
Q psy18014 46 KKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED----VI-IVTSSLTKDMTGK 120 (323)
Q Consensus 46 ~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~----~l-L~iNsl~kDl~~~ 120 (323)
++|...+.+++..++.|.-=++-+.. .-.|+-+.-...-.++.++...++ +- +.....+|==++.
T Consensus 218 r~l~~~lV~iLk~l~~~~yspeydv~----------gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdssk 287 (866)
T KOG1062|consen 218 RDLVPSLVKILKQLTNSGYSPEYDVH----------GISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSK 287 (866)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccCcc----------CCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccc
Confidence 56778888999998887321111222 223444443333344555443222 11 1111122211222
Q ss_pred Ch--HHHhHHHHHhhCCCch-hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHH
Q psy18014 121 ED--LYRAAAIRALCSITDT-TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQ 197 (323)
Q Consensus 121 N~--~ir~lALr~L~~i~~~-~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~ 197 (323)
|- -|==-+.||+.+|.+. .+-.--...+-+.|..++-..|=.|+-++.++.+.+|+.+.+=-..+-++|.|.|+.+.
T Consensus 288 N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIk 367 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIK 367 (866)
T ss_pred cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHH
Confidence 21 1112235666677655 55555567777888888888888899999999999999999888889999999999999
Q ss_pred HHHHHHHHHHHhcChh--hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhh-hhcccCCCCCCchhHHHHHHHHhcCCCh
Q psy18014 198 YHALGLLYHIRKSDQL--AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIED-QNAASGDTNWSNSPLFDYLETCLRHKSE 274 (323)
Q Consensus 198 ~~al~ll~~l~~~d~~--~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 274 (323)
--|+-+.|.+...... -..+++..|.. .++.....+...+...... .| +..++++.+...+.++++
T Consensus 368 rralELs~~lvn~~Nv~~mv~eLl~fL~~---~d~~~k~~~as~I~~laEkfaP--------~k~W~idtml~Vl~~aG~ 436 (866)
T KOG1062|consen 368 RRALELSYALVNESNVRVMVKELLEFLES---SDEDFKADIASKIAELAEKFAP--------DKRWHIDTMLKVLKTAGD 436 (866)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHhcCC--------cchhHHHHHHHHHHhccc
Confidence 9999988887654322 22455555543 2554444444444332211 23 367888888888888999
Q ss_pred hHHHHHHHHHHccc
Q psy18014 275 TVVYEAAHAIVNLR 288 (323)
Q Consensus 275 aV~~ea~k~i~~l~ 288 (323)
-|-.+++..++.+-
T Consensus 437 ~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 437 FVNDDVVNNLLRLI 450 (866)
T ss_pred ccchhhHHHHHHHH
Confidence 88888888888873
No 41
>KOG0166|consensus
Probab=96.45 E-value=0.6 Score=46.99 Aligned_cols=267 Identities=14% Similarity=0.169 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCCC--CCchhhhhhHHHHHHhhcC-CCchhHHHHHHHHHHhcccC-cc--hHh---hhhhhhhhcCCC
Q psy18014 50 HILTKILYLINQGEQ--LGTQEATDAFFAMTKLFQS-KDVILRRMVYLGIKELSNIA-ED--VII---VTSSLTKDMTGK 120 (323)
Q Consensus 50 ~~l~kli~~~~~G~~--~~~~e~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~-~~--~lL---~iNsl~kDl~~~ 120 (323)
.+..++-.+.+.+.+ ..++..+.+-+..|+++.. +++.++--.=-++.+++... +. +++ ++-.|.+=+.+|
T Consensus 85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~ 164 (514)
T KOG0166|consen 85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP 164 (514)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC
Confidence 444444444444433 3355666777778888864 44777666656677775532 22 222 344477888999
Q ss_pred ChHHHhHHHHHhhCCCchh-hHH------HHHHHHHHhccCCCh-HHHHHHHHHHHhhhccC-h----hHHHHHHHHHHH
Q psy18014 121 EDLYRAAAIRALCSITDTT-MIQ------AIERYMKQAIVDRNS-AVSSAAVVSIFHMTKHS-P----DLVKRWVNEVQE 187 (323)
Q Consensus 121 N~~ir~lALr~L~~i~~~~-~~~------~l~~~v~~~L~d~~~-yVRk~A~~~~~kl~~~~-p----~~v~~~~~~l~~ 187 (323)
++.++--|.=+|++|.... .+. ....++...+...++ -..++|.-++-.+++.- | +.++..++.+..
T Consensus 165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999997653 232 234677788887776 56677788899998654 3 567789999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcChhhH---------HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCc
Q psy18014 188 ALNSENVMVQYHALGLLYHIRKSDQLAV---------TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSN 258 (323)
Q Consensus 188 ~l~d~~~~V~~~al~ll~~l~~~d~~~~---------~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~ 258 (323)
++.+.|+.|...|.-++..+.......+ .+++.-|.. ..+-.+.=-||.+..+...+... +.---.
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~---~~~~v~~PaLRaiGNIvtG~d~Q--Tq~vi~ 319 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH---SSPKVVTPALRAIGNIVTGSDEQ--TQVVIN 319 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC---CCcccccHHHhhccceeeccHHH--HHHHHh
Confidence 9999999999888777777765433222 455555532 23333344455554431111100 000001
Q ss_pred hhHHHHHHHHhc-CCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 259 SPLFDYLETCLR-HKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 259 ~~~~~~l~~~L~-~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
...+..+..+++ +..+.+.-||+-+|..++...++.. +.....|...+++++-.+|--|.-.+
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 334566666676 6677799999999999975433222 45667777888888877776665443
No 42
>KOG1824|consensus
Probab=96.36 E-value=1.3 Score=47.28 Aligned_cols=246 Identities=16% Similarity=0.150 Sum_probs=135.6
Q ss_pred CCCCCchhhhhhHHHHHHhhcCCCc-hhHHHHHHHHHHh-cc----cCcchHhhhhhhhhhcCC--CChHHHhHHHHHhh
Q psy18014 62 GEQLGTQEATDAFFAMTKLFQSKDV-ILRRMVYLGIKEL-SN----IAEDVIIVTSSLTKDMTG--KEDLYRAAAIRALC 133 (323)
Q Consensus 62 G~~~~~~e~s~lf~~vvkl~~s~d~-~lKkl~Ylyl~~~-~~----~~~~~lL~iNsl~kDl~~--~N~~ir~lALr~L~ 133 (323)
+.++++.+...++..++.-..++.- .+.|=.|..+-.+ |- .+++.-=.+-.+.+|+++ .|.-+|-.|+-+++
T Consensus 765 ~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 765 ITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred hcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 4555555555565555444333221 3455555555444 22 134444444477888874 47899999999998
Q ss_pred CCCch---hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-H
Q psy18014 134 SITDT---TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLLYHI-R 208 (323)
Q Consensus 134 ~i~~~---~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l-~ 208 (323)
-++-. .-.+.+...+.+++++++..|+++|..|++.+--.+ |+ +++.+-+.+. .+|-=+|--+-.+-++ .
T Consensus 845 Elgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~----yLpfil~qi~-sqpk~QyLLLhSlkevi~ 919 (1233)
T KOG1824|consen 845 ELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK----YLPFILEQIE-SQPKRQYLLLHSLKEVIV 919 (1233)
T ss_pred hhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh----HHHHHHHHHh-cchHhHHHHHHHHHHHHH
Confidence 88643 445677778999999999999999999999986533 33 3333333222 1222222222222222 1
Q ss_pred hc--C--hhhHHHHHHHHhhccCCC-hHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCCh---hHHHHH
Q psy18014 209 KS--D--QLAVTKLVAKLTKFTMKS-PYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSE---TVVYEA 280 (323)
Q Consensus 209 ~~--d--~~~~~~lv~~L~~~~~~~-~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---aV~~ea 280 (323)
.. | ....-++-..|.++.-.. +..-..+-..++++.-.+| +.++..|...+++..+ +.+..|
T Consensus 920 ~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep----------esLlpkL~~~~~S~a~~~rs~vvsa 989 (1233)
T KOG1824|consen 920 SASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP----------ESLLPKLKLLLRSEASNTRSSVVSA 989 (1233)
T ss_pred HhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh----------HHHHHHHHHHhcCCCcchhhhhhhe
Confidence 11 1 112233333443221111 1222233344444433345 5566777777766554 455555
Q ss_pred HHHHHcccCCC-HHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 281 AHAIVNLRRTS-ARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 281 ~k~i~~l~~~~-~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+|-.+....-+ .....+.+.-...++..+|.++|=+||-.+|
T Consensus 990 vKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~n 1032 (1233)
T KOG1824|consen 990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLN 1032 (1233)
T ss_pred eeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 55444442211 1234445555555667899999999998775
No 43
>KOG0212|consensus
Probab=96.32 E-value=0.75 Score=46.52 Aligned_cols=258 Identities=15% Similarity=0.189 Sum_probs=154.2
Q ss_pred HHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchHh----hhhhhhhhcCCCChHHHhHH---HH
Q psy18014 59 INQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVII----VTSSLTKDMTGKEDLYRAAA---IR 130 (323)
Q Consensus 59 ~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL----~iNsl~kDl~~~N~~ir~lA---Lr 130 (323)
+.+|.+-.. -+-.+..-|+.+|.-.|..++-..+-.+-+.++- ..+.+. +--.+.|=..|+...+||.| =|
T Consensus 72 iaLg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 72 IALGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR 150 (675)
T ss_pred HHhccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH
Confidence 445654222 2335666677888888887764444444444442 222111 11234555566777888876 35
Q ss_pred HhhCCCchhh----HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH--H---HHHHHHHHHHhcCCChHHHHHH-
Q psy18014 131 ALCSITDTTM----IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL--V---KRWVNEVQEALNSENVMVQYHA- 200 (323)
Q Consensus 131 ~L~~i~~~~~----~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~--v---~~~~~~l~~~l~d~~~~V~~~a- 200 (323)
.+-.|..++= .+.+.+-+++-+...+|++|.- ++...+.....|++ + ..+++.+-.+|.|.++.|.--+
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~f-lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQF-LVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555655543 5778888999999999999987 66677766667764 3 3688999999999998776333
Q ss_pred H---HHHHHHHhcChh-hHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChh
Q psy18014 201 L---GLLYHIRKSDQL-AVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSET 275 (323)
Q Consensus 201 l---~ll~~l~~~d~~-~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~a 275 (323)
. .+|.+|+..... .+.+.++.+..+ .-+.|+.|...|.-+..+++-.+... =.....++..+-+++..+.+.
T Consensus 230 t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~---l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL---LLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch---hhhhhhhhhhcccCCCCCccc
Confidence 2 357777643222 233333333211 23567888888877776655433210 001233334444555555444
Q ss_pred HHHHHHHH----HHcccCC----CHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 276 VVYEAAHA----IVNLRRT----SARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 276 V~~ea~k~----i~~l~~~----~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
-+.++... ++.+-.. ..-.+...++.+.+.++++..++|.+||.-+
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 33333332 2223211 1134679999999999999999999998744
No 44
>KOG0166|consensus
Probab=96.27 E-value=1.2 Score=44.94 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHcCC-CCCc-hhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc-hHhh-----hhhhhhhcCCCC
Q psy18014 50 HILTKILYLINQGE-QLGT-QEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED-VIIV-----TSSLTKDMTGKE 121 (323)
Q Consensus 50 ~~l~kli~~~~~G~-~~~~-~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~-----iNsl~kDl~~~N 121 (323)
..+.-.+.++-.|. +-++ ..+..+++.+.+++.++|.++..-.+-++..+.+..+| .=++ +--+..=+.++.
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC
Confidence 55667888888996 3333 23568999999999999999999999999988876555 3244 445778889999
Q ss_pred hHHHhHHHHHhhCCCchh--h-----HHHHHHHHHHhcc-CCChHHHHHHHHHHHhhhccChhHHHH-----HHHHHHHH
Q psy18014 122 DLYRAAAIRALCSITDTT--M-----IQAIERYMKQAIV-DRNSAVSSAAVVSIFHMTKHSPDLVKR-----WVNEVQEA 188 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~~~--~-----~~~l~~~v~~~L~-d~~~yVRk~A~~~~~kl~~~~p~~v~~-----~~~~l~~~ 188 (323)
+-++.-|||++++|..-+ - -....+.+...+. ++...+||-||-.+..+--.+++.+.. +++.+-.+
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~ 372 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINL 372 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHH
Confidence 999999999999976432 2 2345577777887 667779999999999999988887763 66677777
Q ss_pred hcCCChHHHHHH
Q psy18014 189 LNSENVMVQYHA 200 (323)
Q Consensus 189 l~d~~~~V~~~a 200 (323)
+...+....--|
T Consensus 373 l~~~ef~~rKEA 384 (514)
T KOG0166|consen 373 LQTAEFDIRKEA 384 (514)
T ss_pred HhccchHHHHHH
Confidence 777765444444
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.26 E-value=0.4 Score=47.27 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHcccC
Q psy18014 259 SPLFDYLETCLRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 259 ~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~ 289 (323)
...++.|...++... |..+++.++=.+..
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 355566666666544 77788877766654
No 46
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.23 E-value=0.013 Score=45.40 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=60.3
Q ss_pred hhhhhhcCCCChHHHhHHHHHhhCCCch-----hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh-HHHHHHHH
Q psy18014 111 SSLTKDMTGKEDLYRAAAIRALCSITDT-----TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD-LVKRWVNE 184 (323)
Q Consensus 111 Nsl~kDl~~~N~~ir~lALr~L~~i~~~-----~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~-~v~~~~~~ 184 (323)
+...+|++||.+-+||-||..|.++... .-++.+..-..+.|.|.++||==+|+-|+.-+...+|+ .+..++++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 4567899999999999999999887533 33678888889999999999999999999999999988 44444443
No 47
>KOG1058|consensus
Probab=95.79 E-value=0.14 Score=53.15 Aligned_cols=209 Identities=11% Similarity=0.193 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHH---HhhCCCc-----hhhHHHHHHHHHHhccCCChH
Q psy18014 87 ILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIR---ALCSITD-----TTMIQAIERYMKQAIVDRNSA 158 (323)
Q Consensus 87 ~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr---~L~~i~~-----~~~~~~l~~~v~~~L~d~~~y 158 (323)
.+|+++++.+. ++.-+..+|-| ++==+-+.|..++-+=+= .+.+... .||+= +...+++-|.|+|.|
T Consensus 40 amK~ii~~mln--Ge~~p~Llm~I--iRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMIL-vcna~RkDLQHPNEy 114 (948)
T KOG1058|consen 40 AMKKIIALMLN--GEDLPSLLMTI--IRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMIL-VCNAYRKDLQHPNEY 114 (948)
T ss_pred HHHHHHHHHHc--CCCchHHHHHH--hheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHH-HHHHHhhhccCchHh
Confidence 57888877665 55445544422 222234555555554433 2333333 34432 457789999999999
Q ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---HHHHHHHHhhccCCChHHHHH
Q psy18014 159 VSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---VTKLVAKLTKFTMKSPYATCM 235 (323)
Q Consensus 159 VRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---~~~lv~~L~~~~~~~~~~~~~ 235 (323)
||-...-=+.|| ..||+++.+.+.+.+++..+++-|--+|+.+++.|=+...+- ...++.++... -.+|-..-.
T Consensus 115 iRG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~-e~DpsCkRN 191 (948)
T KOG1058|consen 115 IRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLT-EQDPSCKRN 191 (948)
T ss_pred hcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHh-ccCchhHHH
Confidence 998866555555 469999999999999999999999999977666664431111 24556554321 112211100
Q ss_pred HHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh---c---CCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCC
Q psy18014 236 LIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL---R---HKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSP 309 (323)
Q Consensus 236 llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L---~---~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~ 309 (323)
-++. +...||+ .-++++..+. . ..-..|+.|=++-.+. ..+....+.+..+-.+|+++
T Consensus 192 --AFi~-L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~---~~p~~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 192 --AFLM-LFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL---ANPAEKARYIRCIYNLLSST 255 (948)
T ss_pred --HHHH-HHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh---cCHHHhhHHHHHHHHHHhcC
Confidence 0000 0111332 2223333321 1 1223677777777665 24788888889999999999
Q ss_pred ChhhHHHHHh
Q psy18014 310 KPVLRFAAVR 319 (323)
Q Consensus 310 ~~niry~aL~ 319 (323)
++.++|-|=.
T Consensus 256 ssaV~fEaa~ 265 (948)
T KOG1058|consen 256 SSAVIFEAAG 265 (948)
T ss_pred Cchhhhhhcc
Confidence 9999997643
No 48
>KOG1242|consensus
Probab=95.74 E-value=1.7 Score=44.30 Aligned_cols=231 Identities=16% Similarity=0.186 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchH--h---hhhhhhhhcCCCChH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVI--I---VTSSLTKDMTGKEDL 123 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~l--L---~iNsl~kDl~~~N~~ 123 (323)
..+.=..+.+.+|..|.- ....+|+.+...+.+....+|.-.--+....... +..++ + .+.++..+ .=+...
T Consensus 195 ~~~a~~~~~~~Lg~~~EP-yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~ 272 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPPFEP-YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKM 272 (569)
T ss_pred HHHHHHHHHHhcCCCCCc-hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHH
Confidence 455556677788855443 4457899999999999999999998888777442 33321 2 23344444 112233
Q ss_pred HHhHHHHHhhCCCchhh---HHHHHHHHHHhccCCChHHHHHHHHHHHhhhc--cChhHHHHHHHHHHHHhcCCChHHHH
Q psy18014 124 YRAAAIRALCSITDTTM---IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK--HSPDLVKRWVNEVQEALNSENVMVQY 198 (323)
Q Consensus 124 ir~lALr~L~~i~~~~~---~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~--~~p~~v~~~~~~l~~~l~d~~~~V~~ 198 (323)
.---.|++|..-.+..+ .+.+++.+.+.+.|.+|-||++|.-|+.++.. .+|| +..+++.+-+++.|.+.-+.-
T Consensus 273 aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e 351 (569)
T KOG1242|consen 273 ASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPE 351 (569)
T ss_pred HHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHH
Confidence 33334556666666655 58889999999999999999999999998764 4577 568899999998887632221
Q ss_pred --HHHHHHHHHHhcChhhHHHHHHHHhhc----cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCC
Q psy18014 199 --HALGLLYHIRKSDQLAVTKLVAKLTKF----TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHK 272 (323)
Q Consensus 199 --~al~ll~~l~~~d~~~~~~lv~~L~~~----~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 272 (323)
+++..-.-+..-++.++.-+++.|... .....-.-++++.-++.+.+ ||.. ..+....+++-+...+.-.
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve-Dp~~---lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE-DPKD---LAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc-CHHH---HhhhHHHHhhHHHHHhcCC
Confidence 222111111222333333344443211 11111334455555555532 3422 0122333333333344445
Q ss_pred ChhHHHHHHHHHHcc
Q psy18014 273 SETVVYEAAHAIVNL 287 (323)
Q Consensus 273 ~~aV~~ea~k~i~~l 287 (323)
-|.|...+.|++..+
T Consensus 428 ~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 428 VPEVRAVAARALGAL 442 (569)
T ss_pred ChhHHHHHHHHHHHH
Confidence 677888888887443
No 49
>KOG2956|consensus
Probab=95.69 E-value=0.26 Score=48.63 Aligned_cols=147 Identities=15% Similarity=0.298 Sum_probs=86.2
Q ss_pred hhhHHHHHHH-HHHccCC-CCChHHHHHHHHHHHHHHHcCCCCCchh--hhhhHHHHHHhhcC-CCchhHHHHHHHHHHh
Q psy18014 25 NLDKTAVLQE-ARTFNDT-PVNPKKCTHILTKILYLINQGEQLGTQE--ATDAFFAMTKLFQS-KDVILRRMVYLGIKEL 99 (323)
Q Consensus 25 ~~ek~~i~qe-~~~f~~~-~~~~~k~~~~l~kli~~~~~G~~~~~~e--~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~ 99 (323)
..+..+.+++ +..+++. +.+.++ .++..+..++.-|. |+=-| .-.|.-.++..+.. .|...|++..=.++..
T Consensus 281 ~~~~~~~v~~~l~~~~g~e~a~~~k--~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 281 SVDQSALVADLLKEISGSERASERK--EALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREM 357 (516)
T ss_pred CcchhHHHHHHHHhccCccchhHHH--HHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Confidence 3455566666 4666666 344444 99999999988883 22100 11222334444454 8999999988887777
Q ss_pred ccc-----CcchHhhhhhhhhhcCCCChHH----------------------------Hh-------HHHHHhhCC----
Q psy18014 100 SNI-----AEDVIIVTSSLTKDMTGKEDLY----------------------------RA-------AAIRALCSI---- 135 (323)
Q Consensus 100 ~~~-----~~~~lL~iNsl~kDl~~~N~~i----------------------------r~-------lALr~L~~i---- 135 (323)
... .|.+-++|-.+..--.|+++-+ .+ ++|+.+.++
T Consensus 358 l~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 358 LTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred HHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 332 3444555554444333333322 22 333232222
Q ss_pred Cch---hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC
Q psy18014 136 TDT---TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS 174 (323)
Q Consensus 136 ~~~---~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~ 174 (323)
.-+ .+++++.+.+.++..+.+..|||+|++|+.-++..-
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 222 235677788888888888888888888888876543
No 50
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.63 E-value=0.82 Score=42.11 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=105.4
Q ss_pred HHHHhcc-CCChHHHHHHHHHHHhh--hccChhHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh--hhHHHHH
Q psy18014 147 YMKQAIV-DRNSAVSSAAVVSIFHM--TKHSPDLVKR--WVNEVQEALNSENVMVQYHALGLLYHIRKSDQ--LAVTKLV 219 (323)
Q Consensus 147 ~v~~~L~-d~~~yVRk~A~~~~~kl--~~~~p~~v~~--~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~--~~~~~lv 219 (323)
.+...|. .++|+++..|.+++... |..+.+++++ .++-+..++.+.+|.|.-.|+..+..+..+.. ..+...+
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i 95 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI 95 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 3444444 56899999999998874 3455677775 58889999999999999999888876654322 2222222
Q ss_pred HHH----hhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCH---
Q psy18014 220 AKL----TKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSA--- 292 (323)
Q Consensus 220 ~~L----~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~--- 292 (323)
.++ .... .+...|..-+|.+..+.-.+.. +......+.-+-++|.+.+.-+.+.+.|+++.++..+.
T Consensus 96 ~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv~~~~-----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 96 PQVCEETVSSP-LNSEVQLAGLRLLTNLTVTNDY-----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHccCCCcch-----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH
Confidence 222 2222 2446888889998755211110 01123334444556778899999999999999987532
Q ss_pred HhH-hhHHHHHHHHhcCC-ChhhHHHHHhh
Q psy18014 293 REL-APAVSVLQLFCSSP-KPVLRFAAVRT 320 (323)
Q Consensus 293 ~~~-~~~~~~l~~~L~s~-~~niry~aL~~ 320 (323)
.++ .++...+..++..+ +.++-.-+|..
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLLRVLTF 199 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHHHHHHH
Confidence 122 45555555555543 56655666544
No 51
>KOG1060|consensus
Probab=95.49 E-value=0.4 Score=50.08 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=111.2
Q ss_pred cCCCChHHHhHHHHHh-hCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChH
Q psy18014 117 MTGKEDLYRAAAIRAL-CSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVM 195 (323)
Q Consensus 117 l~~~N~~ir~lALr~L-~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~ 195 (323)
|++.++-.+.-|++.+ +-|....=+..+++.|.++...+|+-|+|-..+-+++--...|++.-=-++.++..|.|.|+.
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQL 123 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHH
Confidence 3556666666666543 444444558889999999999999999999888888888888987655688999999999999
Q ss_pred HHHHHHHHHHHHHhcChhhH-HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCCh
Q psy18014 196 VQYHALGLLYHIRKSDQLAV-TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSE 274 (323)
Q Consensus 196 V~~~al~ll~~l~~~d~~~~-~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 274 (323)
+-+.|+.+|.-|+-.--..+ .--|+.... -++|+.--.--..+.+++--+|++ ...+.+.|..+|.-.++
T Consensus 124 iRasALRvlSsIRvp~IaPI~llAIk~~~~--D~s~yVRk~AA~AIpKLYsLd~e~-------k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 124 IRASALRVLSSIRVPMIAPIMLLAIKKAVT--DPSPYVRKTAAHAIPKLYSLDPEQ-------KDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhc--CCcHHHHHHHHHhhHHHhcCChhh-------HHHHHHHHHHHhcCCCC
Confidence 99999998887764311111 011111111 123432211111112222335654 56899999999999999
Q ss_pred hHHHHHHHHHHccc
Q psy18014 275 TVVYEAAHAIVNLR 288 (323)
Q Consensus 275 aV~~ea~k~i~~l~ 288 (323)
-|+=.|+-++-.+.
T Consensus 195 lVvgsAv~AF~evC 208 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVC 208 (968)
T ss_pred cchhHHHHHHHHhc
Confidence 99999998887664
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.43 E-value=0.52 Score=49.58 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=107.2
Q ss_pred hhhh-cCCCChHHHhHHHHHh-hCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhc
Q psy18014 113 LTKD-MTGKEDLYRAAAIRAL-CSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALN 190 (323)
Q Consensus 113 l~kD-l~~~N~~ir~lALr~L-~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~ 190 (323)
+... +.+.|++-|--|+|.+ +.+..-+=.+.+.+.|.+.....+.-++|-.-+-+...-+.+|+...-..+.+++=+.
T Consensus 23 ~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~ 102 (757)
T COG5096 23 LSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ 102 (757)
T ss_pred hccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc
Confidence 3444 8999999999999865 3333333367777778888889999999987776666667789877777888888888
Q ss_pred CCChHHHHHHHHHHHHHHhcChhh-HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchh-HHHHHHHH
Q psy18014 191 SENVMVQYHALGLLYHIRKSDQLA-VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP-LFDYLETC 268 (323)
Q Consensus 191 d~~~~V~~~al~ll~~l~~~d~~~-~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 268 (323)
|.||.+...|+..+..++...=.. +...+..+.. -++++.--.-+-.+.+++.-++.. ..+. ..+.+...
T Consensus 103 d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~--d~~ayVRk~Aalav~kly~ld~~l------~~~~g~~~~l~~l 174 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLT--DPHAYVRKTAALAVAKLYRLDKDL------YHELGLIDILKEL 174 (757)
T ss_pred CCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHHhcCHhh------hhcccHHHHHHHH
Confidence 888888888887776665432111 1222222221 123433322222223333334432 2333 66677777
Q ss_pred hcCCChhHHHHHHHHHHcccC
Q psy18014 269 LRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 269 L~~~~~aV~~ea~k~i~~l~~ 289 (323)
+..+++-|+-+|..++..+.+
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 175 VADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hhCCCchHHHHHHHHHHHhch
Confidence 777888888888888777754
No 53
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.39 E-value=0.085 Score=51.96 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=66.7
Q ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHH
Q psy18014 71 TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQ 150 (323)
Q Consensus 71 s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~ 150 (323)
......++.++.+++..+++.+.-.+.......-+ .+.+=++|++|++|..|+|+++.++..+..+.+ ..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~------~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L----~~ 185 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGP------ALEAALTHEDALVRAAALRALGELPRRLSESTL----RL 185 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHH------HHHHHhcCCCHHHHHHHHHHHHhhccccchHHH----HH
Confidence 34556678888999999998888555544322211 222334599999999999999999988777664 46
Q ss_pred hccCCChHHHHHHHHHHHhh
Q psy18014 151 AIVDRNSAVSSAAVVSIFHM 170 (323)
Q Consensus 151 ~L~d~~~yVRk~A~~~~~kl 170 (323)
.+.|.+|-||..|+.++..+
T Consensus 186 al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 186 YLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHcCCCHHHHHHHHHHHHHc
Confidence 69999999999999988665
No 54
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.22 E-value=0.11 Score=45.46 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=80.9
Q ss_pred hhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHH--HHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-HHHHHHHH
Q psy18014 111 SSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAI--ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-RWVNEVQE 187 (323)
Q Consensus 111 Nsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l--~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-~~~~~l~~ 187 (323)
+.+.+-+.++|+.+|-.|++.+..+...-++.+. .+.+.-+..|+++++|+.|.-..-.++.++|+++. ++.+.++.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3566678899999999999999988877777554 58888999999999999999999999999999886 35554443
Q ss_pred Hh------c-CCChHH---HHHHHHHHHHHHhcChhhHHHHHHHH
Q psy18014 188 AL------N-SENVMV---QYHALGLLYHIRKSDQLAVTKLVAKL 222 (323)
Q Consensus 188 ~l------~-d~~~~V---~~~al~ll~~l~~~d~~~~~~lv~~L 222 (323)
.. . +..... ..+.+..+|.+-+.++..=.+++..+
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l 135 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSL 135 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22 1 221112 44557777877665555544555444
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.20 E-value=0.088 Score=36.10 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhhhccChhHHH----HHHHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 157 SAVSSAAVVSIFHMTKHSPDLVK----RWVNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~p~~v~----~~~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
|.||..|+.++..+....++..+ +.++.+..++.|.++.|..+|...|.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 67999999999998877777665 57777888999999999888865543
No 56
>KOG0212|consensus
Probab=95.19 E-value=0.39 Score=48.44 Aligned_cols=211 Identities=18% Similarity=0.176 Sum_probs=134.6
Q ss_pred hhhhhhhhhc-CCCCh-----HHHhHHHHHhh-CCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-
Q psy18014 108 IVTSSLTKDM-TGKED-----LYRAAAIRALC-SITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK- 179 (323)
Q Consensus 108 L~iNsl~kDl-~~~N~-----~ir~lALr~L~-~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~- 179 (323)
=+|.-+.+|. .+++. -.-|+|--++| ........+.++++|..++.|++.-||--||-++|.+.+....-+-
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~ 121 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV 121 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc
Confidence 4565566666 34332 34455555443 2334457889999999999999999999999999988776654433
Q ss_pred ---HHHHHHHHHhcCCChHHHHHHHH---HHHHHHh-cC-hhhHHHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcc
Q psy18014 180 ---RWVNEVQEALNSENVMVQYHALG---LLYHIRK-SD-QLAVTKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAA 250 (323)
Q Consensus 180 ---~~~~~l~~~l~d~~~~V~~~al~---ll~~l~~-~d-~~~~~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~ 250 (323)
..++.+..+..|.++.|...|=- ++-++.- .+ ..++.++++-|.. ....+|+.-..++.-+.-+ ..-|..
T Consensus 122 ~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~P~~ 200 (675)
T KOG0212|consen 122 YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSVPDL 200 (675)
T ss_pred chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCcH
Confidence 45666677777889888887732 3444432 22 3455677766641 2355888888888887544 222211
Q ss_pred cCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHc----ccCCCHH-hHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 251 SGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN----LRRTSAR-ELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~----l~~~~~~-~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+ .=...+.+.+-+-..|.-+++.|.--|=.++-. +.+.|.. .+...++.+..-+.++++.+|-.||.-+
T Consensus 201 ~--m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi 274 (675)
T KOG0212|consen 201 E--MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWI 274 (675)
T ss_pred H--HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHH
Confidence 0 000234455556666777888887555444333 2343334 5678888888888999999998887654
No 57
>KOG1240|consensus
Probab=95.18 E-value=1.1 Score=49.11 Aligned_cols=191 Identities=15% Similarity=0.178 Sum_probs=116.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCchhhh----hhHHHHHHhhcCCCchhHHHHHHH-HHHhcccC----cchH-hhhhhh
Q psy18014 44 NPKKCTHILTKILYLINQGEQLGTQEAT----DAFFAMTKLFQSKDVILRRMVYLG-IKELSNIA----EDVI-IVTSSL 113 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~~~~e~s----~lf~~vvkl~~s~d~~lKkl~Yly-l~~~~~~~----~~~l-L~iNsl 113 (323)
-.-+| .+|..+.....+=.+++..+.- .||+++-.+...++...=|++|-- +..+|+.. +... +-.|.+
T Consensus 476 a~Vra-~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~ 554 (1431)
T KOG1240|consen 476 ADVRA-TALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGM 554 (1431)
T ss_pred HHHHH-HHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445 7888888888777777765432 567777676666577777887754 33344422 2222 234445
Q ss_pred hhhcCCC-ChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhcc-------------------
Q psy18014 114 TKDMTGK-EDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH------------------- 173 (323)
Q Consensus 114 ~kDl~~~-N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~------------------- 173 (323)
.+|.++. -+.- ...=....+...+.+.+...+.|+.|+||++-+-.+..|+..
T Consensus 555 ~n~~nset~~~~-------~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLN 627 (1431)
T KOG1240|consen 555 LNDPNSETAPEQ-------NYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLN 627 (1431)
T ss_pred ccCccccccccc-------ccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhc
Confidence 5666552 1111 111223456777888889999999999999876665543321
Q ss_pred --Ch-------------------hHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHhc---ChhhHHHHHHHHh-hccC
Q psy18014 174 --SP-------------------DLVK-RWVNEVQEALNSENVMVQYHALGLLYHIRKS---DQLAVTKLVAKLT-KFTM 227 (323)
Q Consensus 174 --~p-------------------~~v~-~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~---d~~~~~~lv~~L~-~~~~ 227 (323)
++ .-++ -+++.+++.+.|..+.|+..|+..+..+.+. ....+.++++... ....
T Consensus 628 DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 628 DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCH 707 (1431)
T ss_pred CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeC
Confidence 11 1011 2566788889999999999998887776654 3455555555432 2234
Q ss_pred CChHHHHHHHHHHHH
Q psy18014 228 KSPYATCMLIRIVCK 242 (323)
Q Consensus 228 ~~~~~~~~llr~~~~ 242 (323)
++.|.--..+-++..
T Consensus 708 PN~WIR~~~~~iI~~ 722 (1431)
T KOG1240|consen 708 PNLWIRRAVLGIIAA 722 (1431)
T ss_pred chHHHHHHHHHHHHH
Confidence 677876665555543
No 58
>KOG1059|consensus
Probab=95.18 E-value=0.63 Score=48.25 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=117.4
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSI--TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ 186 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i--~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~ 186 (323)
..|-+..=++|.-||+|--|+-.|-++ .=|+-+.+.++-+++.|.|++|-|-.+|+-.++-|-+++|.=--.+.+.+.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ff 224 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHH
Confidence 334444445788999999999998875 456888999999999999999999999999999999999974445556666
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCC-C-CCCchhHHH
Q psy18014 187 EALNSE-NVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGD-T-NWSNSPLFD 263 (323)
Q Consensus 187 ~~l~d~-~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~-~-~~~~~~~~~ 263 (323)
+++.+. |--+..--+-++..+..-.|---.||++-+... +.+..+.-.+-..+...+.- .-.+|. . ...+..-..
T Consensus 225 kllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l-i~sT~AmSLlYECvNTVVa~-s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 225 KLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL-MESTVAMSLLYECVNTVVAV-SMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH-HHhhHHHHHHHHHHHHheee-hhccCCCCcHHHHHHHHH
Confidence 655443 222222222222222222222222333322100 00111111111111111100 000000 0 000111122
Q ss_pred HHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 264 YLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 264 ~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
-|..++-.+++-.-|=+.-++..+...++..+.+-...+.+.|+..|+++|.=||..+
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHH
Confidence 2333333455555555555555565556777777788888888888888888888765
No 59
>KOG2023|consensus
Probab=95.15 E-value=2.7 Score=43.55 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=139.4
Q ss_pred cCCCchhHHHHHHHHHHh--cc---cCcc-hHhhhhhhhhhcCCCChHHHh---HHHHHhhCCCchhhHHHHHHHHHHhc
Q psy18014 82 QSKDVILRRMVYLGIKEL--SN---IAED-VIIVTSSLTKDMTGKEDLYRA---AAIRALCSITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~--~~---~~~~-~lL~iNsl~kDl~~~N~~ir~---lALr~L~~i~~~~~~~~l~~~v~~~L 152 (323)
.+.|...|.+.=+.+++- +. .+++ .--+=....+-+.+++|+||+ .-+.++.+...-..++.+.+.+.+.|
T Consensus 58 ~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L 137 (885)
T KOG2023|consen 58 KSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELL 137 (885)
T ss_pred cccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHh
Confidence 556666677766666654 22 2333 445667788899999999985 55788888888888999999999999
Q ss_pred cCCChHHHHHHHHHHHhhhccChhHHHH---------HHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH----HHHH
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDLVKR---------WVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV----TKLV 219 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~v~~---------~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~----~~lv 219 (323)
.+++...---|.-|+-|++...++.... +++.+-......+|..-.+|++.+...-...+.++ -+.+
T Consensus 138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl 217 (885)
T KOG2023|consen 138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL 217 (885)
T ss_pred cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 9999999999999999999988876642 45666666778899999999988776554444443 2344
Q ss_pred HHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC
Q psy18014 220 AKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT 290 (323)
Q Consensus 220 ~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~ 290 (323)
+.+.. ..-.+|-.+-.+-+-+..++.--|+- .-++...++++.-...+..+..|.+||+..-+.+.+.
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~dk---l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPDK---LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh---cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 43321 11235554444444333332222210 0013455555555556678889999999999988754
No 60
>KOG0414|consensus
Probab=95.15 E-value=0.084 Score=56.99 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCChHHHhHHHHHhhCCC--chhhHHHHHHHHHHhcc-CCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCCh
Q psy18014 118 TGKEDLYRAAAIRALCSIT--DTTMIQAIERYMKQAIV-DRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENV 194 (323)
Q Consensus 118 ~~~N~~ir~lALr~L~~i~--~~~~~~~l~~~v~~~L~-d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~ 194 (323)
-..||.++..|--+|+++. +.++++.=.+.+-..+. +++|-||.++++|++-+--..|.+++.|.+.+...|.|.++
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESP 1012 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccH
Confidence 4557999998888888765 56788888888888888 89999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy18014 195 MVQYHALGLLYHIR 208 (323)
Q Consensus 195 ~V~~~al~ll~~l~ 208 (323)
.|.-.|+-++..+-
T Consensus 1013 ~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHLI 1026 (1251)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999976655443
No 61
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.05 E-value=2 Score=43.84 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=121.7
Q ss_pred CcchHhhhhhhhhhc-CCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHH
Q psy18014 103 AEDVIIVTSSLTKDM-TGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW 181 (323)
Q Consensus 103 ~~~~lL~iNsl~kDl-~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~ 181 (323)
.|+-+-+||-=.-++ +|.|--|-.-|+.+|-+-++.+-+.-+...|-..+.|-+..-+.-|+-++-.|....|.--...
T Consensus 334 ~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~ 413 (898)
T COG5240 334 YPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY 413 (898)
T ss_pred CCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH
Confidence 455555566433333 6667777777777777777777777777777777777777777776666666666666544445
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchh
Q psy18014 182 VNEVQEALNSENV-MVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260 (323)
Q Consensus 182 ~~~l~~~l~d~~~-~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
++.+.+.|.+.-. -.--.++-++..+-+.+|.+--+.+..|-..--..+|-| ..+|++.-+..+.|.. ++-..
T Consensus 414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~-I~vrIL~iLG~EgP~a-----~~P~~ 487 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQ-ITVRILGILGREGPRA-----KTPGK 487 (898)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhH-HHHHHHHHhcccCCCC-----CCcch
Confidence 5566666655321 111112333444444454443333333321101234555 4567766555555543 23455
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHcccC--CCHHhHhhHHHHHHHHhcCCChhhHHH
Q psy18014 261 LFDYLETCLRHKSETVVYEAAHAIVNLRR--TSARELAPAVSVLQLFCSSPKPVLRFA 316 (323)
Q Consensus 261 ~~~~l~~~L~~~~~aV~~ea~k~i~~l~~--~~~~~~~~~~~~l~~~L~s~~~niry~ 316 (323)
++..+-..+--.|+.|.-.|+.++..+.- ..+-....+.+.+.+-+...|-++|=-
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHH
Confidence 55555554445788888888888866542 223456777888888888888887743
No 62
>KOG4224|consensus
Probab=94.84 E-value=1.6 Score=42.19 Aligned_cols=270 Identities=18% Similarity=0.197 Sum_probs=149.3
Q ss_pred HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhh-hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC-cchHh------
Q psy18014 37 TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEA-TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA-EDVII------ 108 (323)
Q Consensus 37 ~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~-s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-~~~lL------ 108 (323)
.+.+++.+..+ .+..-++..|+..+.--+..+ +.-.+..|.+..+.|+..+-.+..++.+++-.. .--+|
T Consensus 174 rLakskdirvq--rnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~ 251 (550)
T KOG4224|consen 174 RLAKSKDIRVQ--RNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPK 251 (550)
T ss_pred hhcccchhhHH--HHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccc
Confidence 35666555444 456667777776643222112 233455688999999999999999999885321 00011
Q ss_pred hhhhhhhhcCCCChHH---HhHHHHHhhCCCch--hhHHH-HHHHHHHhccCCC-hHHHHHHHHHH--HhhhccChhHHH
Q psy18014 109 VTSSLTKDMTGKEDLY---RAAAIRALCSITDT--TMIQA-IERYMKQAIVDRN-SAVSSAAVVSI--FHMTKHSPDLVK 179 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~i---r~lALr~L~~i~~~--~~~~~-l~~~v~~~L~d~~-~yVRk~A~~~~--~kl~~~~p~~v~ 179 (323)
++.+|..=+.++.+.+ -|+|||-+++=... ++++. -.+.+.+.|.++. |.|- ..+.|+ ..+++.+..++-
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plil-asVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLIL-ASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHH-HHHHHHhhcccccCccccee
Confidence 2334444444555555 45666666653322 12221 1355666775554 4443 235555 456666655443
Q ss_pred --HHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcCh---------hhHHHHHHHHhhccCCChH-HHHHHHHHHHHH-hh
Q psy18014 180 --RWVNEVQEALNSENV-MVQYHALGLLYHIRKSDQ---------LAVTKLVAKLTKFTMKSPY-ATCMLIRIVCKL-IE 245 (323)
Q Consensus 180 --~~~~~l~~~l~d~~~-~V~~~al~ll~~l~~~d~---------~~~~~lv~~L~~~~~~~~~-~~~~llr~~~~~-~~ 245 (323)
.|+.-+-.+|.-.+. -.+.||...|..+.-... -++.+++.-+. .+|. .|-.+--.+..+ +.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l----D~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL----DGPVSVQSEISACIAQLALN 406 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh----cCChhHHHHHHHHHHHHHhc
Confidence 377777777776654 589999888877754322 22244444332 1331 222222222211 11
Q ss_pred hhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----------hhHHHHHHHHhcCCChhhH
Q psy18014 246 DQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----------APAVSVLQLFCSSPKPVLR 314 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----------~~~~~~l~~~L~s~~~nir 314 (323)
+...+ +-....+++++.+++.+.+.-|.=.|+-++..+.+. ...+ ......|-+|++|.+...+
T Consensus 407 d~~k~----~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~-v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~ 481 (550)
T KOG4224|consen 407 DNDKE----ALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD-VEHYARVIEAWDHPVQGIQGRLARFLASHELTFR 481 (550)
T ss_pred cccHH----HHhhcCCcceeecccCccchhhcccHHHHHHhhhhh-hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHH
Confidence 11100 012356678889999888888888888888888652 2222 3455677888888766655
Q ss_pred HHHH
Q psy18014 315 FAAV 318 (323)
Q Consensus 315 y~aL 318 (323)
-.|.
T Consensus 482 hia~ 485 (550)
T KOG4224|consen 482 HIAR 485 (550)
T ss_pred HHHH
Confidence 5544
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.63 E-value=1.8 Score=40.60 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=72.1
Q ss_pred hhhhhhhhhcCCCChHHHhHHHHHh--hCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-hHH------
Q psy18014 108 IVTSSLTKDMTGKEDLYRAAAIRAL--CSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-DLV------ 178 (323)
Q Consensus 108 L~iNsl~kDl~~~N~~ir~lALr~L--~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-~~v------ 178 (323)
+..+-+..-++++++.+|..|+++| +++.+++++....+-+.+.+...++-|+-.|+-++.-+...++ +.+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 4455566778889999999999986 4777888888888888888866788899999888887664442 222
Q ss_pred ------HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 179 ------KRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 179 ------~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
..+..-+.+.+.+.++.++..|.--+..+
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL 141 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23555667777777887777665444444
No 64
>KOG1824|consensus
Probab=94.62 E-value=1.4 Score=47.06 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=131.7
Q ss_pred cCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh-HHHH
Q psy18014 102 IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD-LVKR 180 (323)
Q Consensus 102 ~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~-~v~~ 180 (323)
+.|--+|++|-|+++++.. +-....+--..+.+.+.+.|.|+++-|..-|+-|++-+..+-|+ -++.
T Consensus 18 DKDfRfMAtsDLm~eLqkd------------si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~ 85 (1233)
T KOG1824|consen 18 DKDFRFMATSDLMTELQKD------------SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET 85 (1233)
T ss_pred CcchhhhhHHHHHHHHHhh------------hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH
Confidence 3455799999999999874 22235566778889999999999999999999999988877765 4666
Q ss_pred HHHHHHH-HhcCCChHHHHHHHHHHHHHHhcCh--------hhHHHHHHHHhhccCC-Ch--HHHHHHHHHHHHHhhhhh
Q psy18014 181 WVNEVQE-ALNSENVMVQYHALGLLYHIRKSDQ--------LAVTKLVAKLTKFTMK-SP--YATCMLIRIVCKLIEDQN 248 (323)
Q Consensus 181 ~~~~l~~-~l~d~~~~V~~~al~ll~~l~~~d~--------~~~~~lv~~L~~~~~~-~~--~~~~~llr~~~~~~~~~~ 248 (323)
..+.+.. ++...+..=-.+++++..-+.+-.| .-+.++.+.|...-.. .+ -.+|..+.+++.++.+-.
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g 165 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG 165 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc
Confidence 6666543 4555554445667777666655443 1124555555322111 22 378888888887644322
Q ss_pred cccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccC-CCHHhHhhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 249 AASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR-TSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~-~~~~~~~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
+. .-.+-..+...+.+.|++.-.+|.-.|+-++-++.. .+..++..++.-+.+=|+.+ .+-+++|+
T Consensus 166 ~l---l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~---~q~~~~rt 232 (1233)
T KOG1824|consen 166 TL---LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR---TQMSATRT 232 (1233)
T ss_pred cc---CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC---CchHHHHH
Confidence 11 001245566777777888888999999988887753 24566777766666666644 34444443
No 65
>KOG1242|consensus
Probab=94.29 E-value=0.49 Score=48.04 Aligned_cols=154 Identities=10% Similarity=0.142 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHcCCCCC-chhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcc--cCcchHhhhhhhhhhcCCCC--
Q psy18014 47 KCTHILTKILYLINQGEQLG-TQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSN--IAEDVIIVTSSLTKDMTGKE-- 121 (323)
Q Consensus 47 k~~~~l~kli~~~~~G~~~~-~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~--~~~~~lL~iNsl~kDl~~~N-- 121 (323)
+-|.+.-.++..|.--.+.- +.-++.+-+.+++.+-..+.++|+-++-.+..+.. .++++...+|+|..=++||+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence 33455555666444332211 12345778888889999999999999999999976 35667789999999999999
Q ss_pred --hHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC--hhHHH----HHHHHHHHHhcCCC
Q psy18014 122 --DLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS--PDLVK----RWVNEVQEALNSEN 193 (323)
Q Consensus 122 --~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~--p~~v~----~~~~~l~~~l~d~~ 193 (323)
+.+.++.=.+.-...++.-..-+.+.+++++.+++.-.+|.++.-.-.++... |.-+. .+++.++..+.|-.
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~ 428 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV 428 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC
Confidence 34444444444444445556678899999999999999999888877776544 44333 56778888888888
Q ss_pred hHHHHHH
Q psy18014 194 VMVQYHA 200 (323)
Q Consensus 194 ~~V~~~a 200 (323)
|-|-+-+
T Consensus 429 PEvR~va 435 (569)
T KOG1242|consen 429 PEVRAVA 435 (569)
T ss_pred hhHHHHH
Confidence 8554444
No 66
>KOG2023|consensus
Probab=94.18 E-value=2.4 Score=43.94 Aligned_cols=154 Identities=10% Similarity=0.113 Sum_probs=102.3
Q ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC---------cc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCC---
Q psy18014 70 ATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA---------ED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT--- 136 (323)
Q Consensus 70 ~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~---------~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~--- 136 (323)
..++.+....++.++|+-.--=.+=++..+-+.+ +. .-..+-.+..-.+|++|.+|+.|+.++-.+.
T Consensus 126 wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 4567777788888888544433344444442211 11 3345677888899999999999999988764
Q ss_pred chhhHH---HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 137 DTTMIQ---AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK----RWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 137 ~~~~~~---~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
+..+.- .+.+.+-..-+|.+|.|||..|.++..|....||-+. ..++.+-....|.|..|..-|=-....+..
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 334433 3334444555899999999999999999988887542 567777777788888887777544444444
Q ss_pred cC--h----hhHHHHHHHHh
Q psy18014 210 SD--Q----LAVTKLVAKLT 223 (323)
Q Consensus 210 ~d--~----~~~~~lv~~L~ 223 (323)
+. + ..+.++++.|.
T Consensus 286 qpi~~~~L~p~l~kliPvLl 305 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLL 305 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHH
Confidence 32 1 11356666663
No 67
>KOG2025|consensus
Probab=93.86 E-value=1 Score=46.67 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=92.9
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcc----cCcchH-hhhhhhhh
Q psy18014 41 TPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSN----IAEDVI-IVTSSLTK 115 (323)
Q Consensus 41 ~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~----~~~~~l-L~iNsl~k 115 (323)
.+.+..+..+.+.+++..+-+ .|.++-.+-.+|..+++...++|..++.=+..-+..+.+ ..|+++ ...-.+..
T Consensus 55 resi~dRIl~fla~fv~sl~q-~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 55 RESIPDRILSFLARFVESLPQ-LDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLI 133 (892)
T ss_pred CCCcHHHHHHHHHHHHHhhhc-cCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 356777777999999887775 334433566788899999999999999888887777744 234455 45558888
Q ss_pred hcCCCChHHHhHHHHHhhCCCchh------hHHHHHHHHHHhccCCChHHHHHHHHHHH
Q psy18014 116 DMTGKEDLYRAAAIRALCSITDTT------MIQAIERYMKQAIVDRNSAVSSAAVVSIF 168 (323)
Q Consensus 116 Dl~~~N~~ir~lALr~L~~i~~~~------~~~~l~~~v~~~L~d~~~yVRk~A~~~~~ 168 (323)
-+.|.-|-||--|+-+||.+-..+ ..+.+...|+ +|++|-||++|..++.
T Consensus 134 Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liq---nDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 134 RLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQ---NDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh---cCCcHHHHHHHHHhhc
Confidence 999999999999999999998322 3343333333 4999999999998865
No 68
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.51 E-value=0.98 Score=46.85 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCC-----chhhHH-------HHHHHHHHhccCCC
Q psy18014 90 RMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT-----DTTMIQ-------AIERYMKQAIVDRN 156 (323)
Q Consensus 90 kl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~-----~~~~~~-------~l~~~v~~~L~d~~ 156 (323)
|=+-+|+..+.+..|. ++---+.+.+=+.+..-..|+.-+-..+++. .++|++ .+..-+.+-|.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 4444555555554444 2334677888888888899999999888874 455654 67778888899999
Q ss_pred hHHHHHHHHHHHhhhccChhHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q psy18014 157 SAVSSAAVVSIFHMTKHSPDLVK---RWVNEVQEALNSENVMVQYHALGLLYHIR 208 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~p~~v~---~~~~~l~~~l~d~~~~V~~~al~ll~~l~ 208 (323)
||+|-+|+-++-|+|..+...++ ++...+-..+.|+...|--+|+.++..+-
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999987766554 57888888899999889888887765543
No 69
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.48 E-value=2.3 Score=43.43 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=64.6
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC--chhhHHHHHHHHH
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT--DTTMIQAIERYMK 149 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~--~~~~~~~l~~~v~ 149 (323)
-|-.++..... +...|||.=-++-.|.+. ++..--++|++..=|.|.+..||--|+|.|..+. .++.+.-+..-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 34444444443 577888888888777665 4445677777777777777777777777777665 3567777777777
Q ss_pred HhccCCChHHHHHHHHHHHhhhccChhH-HHHHHHHH
Q psy18014 150 QAIVDRNSAVSSAAVVSIFHMTKHSPDL-VKRWVNEV 185 (323)
Q Consensus 150 ~~L~d~~~yVRk~A~~~~~kl~~~~p~~-v~~~~~~l 185 (323)
+.|..-++-.+..+=-++..+++.+|.. +..+++.+
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i 139 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQI 139 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 7777666655555444455555556543 23344443
No 70
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.45 E-value=0.13 Score=45.35 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=91.7
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcccCc-chHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCC
Q psy18014 78 TKLFQSKDVILRRMVYLGIKELSNIAE-DVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRN 156 (323)
Q Consensus 78 vkl~~s~d~~lKkl~Ylyl~~~~~~~~-~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~ 156 (323)
-.+.++...+.|-++++++....+.-+ ..+-....+..++. .=..+=+++-+.++.+.... +.+.+.+.+-+.|.+
T Consensus 57 ~~L~~~~~~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~-~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s~~ 133 (213)
T PF08713_consen 57 DELWESGYREERYLALLILDKRRKKLTEEDLELLEKWLPDID-NWATCDSLCSKLLGPLLKKH--PEALELLEKWAKSDN 133 (213)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCC-CHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHCSS
T ss_pred HHHcCCchHHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCC-cchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhCCc
Confidence 456788888888888888876554322 22222223333222 12345555556665553322 455666777777889
Q ss_pred hHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHH
Q psy18014 157 SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYAT 233 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~ 233 (323)
+++|+.|+.+..+.+.. +....++..+...+.|.+..|+.+.--+|-++.+.++......+..-. ...++|+.
T Consensus 134 ~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~--~~~~~~~~ 206 (213)
T PF08713_consen 134 EWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS--DRLSRWTL 206 (213)
T ss_dssp HHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-------HHHH
T ss_pred HHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc--ccCchhHH
Confidence 99999998888777665 445567777888888888888877777788887778777766666532 12355554
No 71
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=93.37 E-value=5 Score=42.32 Aligned_cols=222 Identities=15% Similarity=0.192 Sum_probs=135.9
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcc---cCcchH--hhhhhhhhhcCCCChHHHhHHHHHhhCCCchh-hHHH--
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSN---IAEDVI--IVTSSLTKDMTGKEDLYRAAAIRALCSITDTT-MIQA-- 143 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~---~~~~~l--L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~-~~~~-- 143 (323)
.++..+++++.+++.++.-++.-+++.++- +.+.+. =++..|.|.+.++|+-.+-.|||.|+++.... +-..
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 667778899999999999888889888853 334432 26778999999999999999999999997543 2222
Q ss_pred ---HHHHHHHhccCCChHHHHHHHHHHHhhhccCh--hHHH--HHHHHHHHHhcC-CChHHHHHHHHHHHHHHhcChhh-
Q psy18014 144 ---IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP--DLVK--RWVNEVQEALNS-ENVMVQYHALGLLYHIRKSDQLA- 214 (323)
Q Consensus 144 ---l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p--~~v~--~~~~~l~~~l~d-~~~~V~~~al~ll~~l~~~d~~~- 214 (323)
+++.+...|.+.+ .+-.|+-.+|++...+. ..+. +.++.+.+++.. .++.+...+++++.-+..+.+.+
T Consensus 370 ~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq 447 (708)
T PF05804_consen 370 SLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ 447 (708)
T ss_pred HCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence 3466777777644 44445555556554321 1111 345666565443 44555555566655554433222
Q ss_pred -------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh----cCCChhHHHHHHHH
Q psy18014 215 -------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL----RHKSETVVYEAAHA 283 (323)
Q Consensus 215 -------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~aV~~ea~k~ 283 (323)
+..|+.... .+.+|... ++||=++.. ++. ....|.+++.++. ...++..+.||+-+
T Consensus 448 lm~~g~gL~~L~~ra~--~~~D~lLl-KlIRNiS~h---~~~-------~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRAL--KTRDPLLL-KLIRNISQH---DGP-------LKELFVDFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred HHHhcCcHHHHHHHHH--hcccHHHH-HHHHHHHhc---Cch-------HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 233333322 34566543 455555433 322 1345566666533 34688999999999
Q ss_pred HHcccCCC---HHhH--hhHHHHHHHHhcC
Q psy18014 284 IVNLRRTS---AREL--APAVSVLQLFCSS 308 (323)
Q Consensus 284 i~~l~~~~---~~~~--~~~~~~l~~~L~s 308 (323)
+-.++..+ ..++ -..++.+...|..
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence 99886321 1223 3567777777764
No 72
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.18 E-value=3.1 Score=36.45 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=62.9
Q ss_pred hhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHH
Q psy18014 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184 (323)
Q Consensus 113 l~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~ 184 (323)
+.+=++|+|+..|-.|+-++......+-.+.+...+...+.|.+.||||+..-++-.+...+|+.+.+|+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 334458999999999999999888888899999999999999999999999999999999999999988877
No 73
>KOG0213|consensus
Probab=92.97 E-value=14 Score=39.04 Aligned_cols=234 Identities=15% Similarity=0.161 Sum_probs=133.6
Q ss_pred HhhcCCCchhHHHHHHHHHHhcccC-cchHhhhhhhhhhcCCCChHHHhHHHHH----hhCCCch----hhHHHHHHHHH
Q psy18014 79 KLFQSKDVILRRMVYLGIKELSNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRA----LCSITDT----TMIQAIERYMK 149 (323)
Q Consensus 79 kl~~s~d~~lKkl~Ylyl~~~~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~----L~~i~~~----~~~~~l~~~v~ 149 (323)
+-++.+....|.++|...+..++.. ++ .++-+..|+.|.+|.+|-++.-+ +++++.. .+.+.+...|.
T Consensus 689 rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil 765 (1172)
T KOG0213|consen 689 RRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGIL 765 (1172)
T ss_pred hhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 3367778888999999988776642 22 45677789999999777666554 4555443 45677777888
Q ss_pred HhccCCChHHH------HHHHHHHHhhh-ccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---hc-ChhhH-HH
Q psy18014 150 QAIVDRNSAVS------SAAVVSIFHMT-KHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIR---KS-DQLAV-TK 217 (323)
Q Consensus 150 ~~L~d~~~yVR------k~A~~~~~kl~-~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~---~~-d~~~~-~~ 217 (323)
-++.+.+..+. -+.+-++..-. +.-|.++ ..+-..|++..|-|-.+|.-++..+. +. ..... .+
T Consensus 766 ~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~----stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 766 YAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQIC----STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred HHHHhcccchhhhhhhHHHHHHHHhhccccchHHHH----HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 88887765444 11111222211 2224444 44445566777777777654433321 11 11111 11
Q ss_pred HHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccC-----CC
Q psy18014 218 LVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR-----TS 291 (323)
Q Consensus 218 lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~-----~~ 291 (323)
+=..|.. .+--.|-..=.+|..++.+.+--... ....-+.+++..|.++|++...-|+-.|+..+-.+.. ++
T Consensus 842 lGvvLyEylgeeypEvLgsILgAikaI~nvigm~--km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~ 919 (1172)
T KOG0213|consen 842 LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT--KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS 919 (1172)
T ss_pred hhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc--ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC
Confidence 1111110 01112323333444443332211000 0001267888999999999999999999988766642 23
Q ss_pred HHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 292 ARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 292 ~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
...+.+..=-|.-+|.+.+-++|=+|..++
T Consensus 920 aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 920 AREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556777777777777777778887776654
No 74
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.59 E-value=1.6 Score=44.78 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=67.7
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
.+.|.+..+..+...+-++|++|++++.+..+..+.+.+. +=...++++|-.|+.|+-++-...|+.++..+-.+.. =
T Consensus 448 ~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n 525 (574)
T smart00638 448 HELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-N 525 (574)
T ss_pred HHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-C
Confidence 4445555556677788999999999999999999999887 4455678999999999998888889888764333331 1
Q ss_pred cCCChHHHHHHHHHH
Q psy18014 190 NSENVMVQYHALGLL 204 (323)
Q Consensus 190 ~d~~~~V~~~al~ll 204 (323)
.+.++-|-.+|..++
T Consensus 526 ~~e~~EvRiaA~~~l 540 (574)
T smart00638 526 RAEPPEVRMAAVLVL 540 (574)
T ss_pred CCCChHHHHHHHHHH
Confidence 234456666665443
No 75
>KOG1020|consensus
Probab=92.57 E-value=1.8 Score=48.44 Aligned_cols=125 Identities=12% Similarity=0.162 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhH----HHHHHHHHHhccCCChHHHH
Q psy18014 86 VILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMI----QAIERYMKQAIVDRNSAVSS 161 (323)
Q Consensus 86 ~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~----~~l~~~v~~~L~d~~~yVRk 161 (323)
..-=++.|.|+..-.+.....=-..+-|.-=+..+-+-+|.-|||+|+.|...+=. +.+-..|..-+.|+++-||-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVRE 873 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVRE 873 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHH
Confidence 33445566665433221111001223344445678889999999999998754322 56667788889999999999
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 162 AAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 162 ~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
+|+-=+++-...+||.+.++-+.+.+-+.|..-+|-=+++-.+.++...
T Consensus 874 AaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 9999999988889999999888888888887777777777777666543
No 76
>KOG1248|consensus
Probab=92.27 E-value=21 Score=39.36 Aligned_cols=243 Identities=14% Similarity=0.134 Sum_probs=142.2
Q ss_pred hhhhHHH-HHHhhcCCCchhHHHHHHHHHHh----cccCcc-hHhhhhhhhhh-cCCCChHHHhHHHHHhhCCCc-----
Q psy18014 70 ATDAFFA-MTKLFQSKDVILRRMVYLGIKEL----SNIAED-VIIVTSSLTKD-MTGKEDLYRAAAIRALCSITD----- 137 (323)
Q Consensus 70 ~s~lf~~-vvkl~~s~d~~lKkl~Ylyl~~~----~~~~~~-~lL~iNsl~kD-l~~~N~~ir~lALr~L~~i~~----- 137 (323)
.+..+++ +-.+..+.|-..+.-.|+-+-.. ++..++ .+-..+++..- -++.++.++--|-|.|..+..
T Consensus 609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~ 688 (1176)
T KOG1248|consen 609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGE 688 (1176)
T ss_pred HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchh
Confidence 5555555 43344444433333333322222 444433 44445555544 455588888888777655544
Q ss_pred ---hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh----hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-
Q psy18014 138 ---TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP----DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK- 209 (323)
Q Consensus 138 ---~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p----~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~- 209 (323)
.+.++++...+.+.+.+...++++.++-|+..|++..+ +.+.+.++++-=.+.+.|-.---+|..+|+.+-.
T Consensus 689 ~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i 768 (1176)
T KOG1248|consen 689 GLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI 768 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH
Confidence 36688889999999999999999999999999999888 5566666666555566665666677777776651
Q ss_pred -------cCh--hhHHHHHHHHhhccCCCh-HHHHH-HHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHH
Q psy18014 210 -------SDQ--LAVTKLVAKLTKFTMKSP-YATCM-LIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVY 278 (323)
Q Consensus 210 -------~d~--~~~~~lv~~L~~~~~~~~-~~~~~-llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ 278 (323)
+++ ..+...+..+..+...+. ...+- |+-+-.-+ .+... ..++...+.+++.+..+|.++++.|+-
T Consensus 769 ~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il-~e~~~--~ld~~~l~~li~~V~~~L~s~sreI~k 845 (1176)
T KOG1248|consen 769 QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL-QEFKN--ILDDETLEKLISMVCLYLASNSREIAK 845 (1176)
T ss_pred HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH-HHHhc--cccHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 122 233555555543322222 11111 33222211 21111 011234688899999999999999999
Q ss_pred HHHHHHHcccCCCHH-----hHhhHHHHHHHHhcCCChhhHH
Q psy18014 279 EAAHAIVNLRRTSAR-----ELAPAVSVLQLFCSSPKPVLRF 315 (323)
Q Consensus 279 ea~k~i~~l~~~~~~-----~~~~~~~~l~~~L~s~~~niry 315 (323)
.|+..|-.+-..-+. .+......+..++.....++|-
T Consensus 846 aAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 846 AAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 999988666322222 2344455555555544455543
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=92.06 E-value=11 Score=35.53 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=85.2
Q ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHH
Q psy18014 70 ATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYM 148 (323)
Q Consensus 70 ~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v 148 (323)
....+....+++.+.++.++.....++..+.. +++. -.+..+.+ |+|..+|..|.++|+.++.+.-+..+..
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~~~l~~-- 144 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELGD--PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERALDPLLE-- 144 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhhHHHHH--
Confidence 45677778889999999999888886665543 2222 22333333 8999999999999999999986554444
Q ss_pred HHhccCCC------------hHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q psy18014 149 KQAIVDRN------------SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 149 ~~~L~d~~------------~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d 211 (323)
.+.|.. ..||..|+.++..+- +|+ ..+.+...+.+.+..|..+|...+..+...+
T Consensus 145 --~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--~~~----~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 145 --ALQDEDSGSAAAALDAALLDVRAAAAEALGELG--DPE----AIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred --HhccchhhhhhhhccchHHHHHHHHHHHHHHcC--Chh----hhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 444433 257887777776652 232 3344555666777777777777766666554
No 78
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.33 E-value=5.4 Score=37.33 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
.-+...|..++.+.++.||..|+-|++-..-.+++..++.+.-+...+...++.|...|+..+.++-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLL 93 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33445566899999999999999999998888999999888888777766677888888877776543
No 79
>KOG1243|consensus
Probab=91.06 E-value=0.42 Score=49.30 Aligned_cols=125 Identities=14% Similarity=0.302 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCC--------------CCCchhh-hhhHHHHHHhhcCCCchhHHHHHHHHHHhcc-cCcchH--hhhh
Q psy18014 50 HILTKILYLINQGE--------------QLGTQEA-TDAFFAMTKLFQSKDVILRRMVYLGIKELSN-IAEDVI--IVTS 111 (323)
Q Consensus 50 ~~l~kli~~~~~G~--------------~~~~~e~-s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~-~~~~~l--L~iN 111 (323)
..+-.++..+.-|+ ++.+.|. ..+-+.++|+|.++|-.+|=+..-|+..|.+ ..++.+ -+--
T Consensus 293 kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~p 372 (690)
T KOG1243|consen 293 KVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFP 372 (690)
T ss_pred HHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHH
Confidence 45566666666665 2222221 1355678999999999999999999999966 344433 3556
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCCch----hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSITDT----TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS 174 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~~~----~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~ 174 (323)
.+..-+.|+|+.+|+.+|++|..+.+. .+=..+.+++.+.-.|.++-+|-+-.+|++|+-+..
T Consensus 373 hv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 373 HVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 778888999999999999999876543 355677888888888999999999999999987664
No 80
>KOG2062|consensus
Probab=90.84 E-value=2.9 Score=43.72 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=73.9
Q ss_pred chhHHHHHH--HHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHh--hCCCc--hhhHHHHHHHHHHhccCCChHH
Q psy18014 86 VILRRMVYL--GIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRAL--CSITD--TTMIQAIERYMKQAIVDRNSAV 159 (323)
Q Consensus 86 ~~lKkl~Yl--yl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L--~~i~~--~~~~~~l~~~v~~~L~d~~~yV 159 (323)
-.++|=+=+ ++..|+. .+++=-.|+.+..| .+|.+|...+=++ +..++ -..+.. -+.=+.+|.|..|
T Consensus 499 eki~RGl~vGiaL~~ygr-qe~Ad~lI~el~~d---kdpilR~~Gm~t~alAy~GTgnnkair~---lLh~aVsD~nDDV 571 (929)
T KOG2062|consen 499 EKIIRGLAVGIALVVYGR-QEDADPLIKELLRD---KDPILRYGGMYTLALAYVGTGNNKAIRR---LLHVAVSDVNDDV 571 (929)
T ss_pred HHHHHHHHHhHHHHHhhh-hhhhHHHHHHHhcC---CchhhhhhhHHHHHHHHhccCchhhHHH---hhcccccccchHH
Confidence 344443333 3344443 23444445555554 4888886555333 33333 222332 2334577999999
Q ss_pred HHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-ChhhHHHHHHHH
Q psy18014 160 SSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS-DQLAVTKLVAKL 222 (323)
Q Consensus 160 Rk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~-d~~~~~~lv~~L 222 (323)
|++|++++.-+.-.+|+...+.+.-+. .+-||.|-|.|.-+|-.-+-. +......+++-|
T Consensus 572 rRaAVialGFVl~~dp~~~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl 632 (929)
T KOG2062|consen 572 RRAAVIALGFVLFRDPEQLPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLKEAINLLEPL 632 (929)
T ss_pred HHHHHHHheeeEecChhhchHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhh
Confidence 999999999999889987655444443 466899988875555544432 223344555544
No 81
>KOG4224|consensus
Probab=90.70 E-value=2.9 Score=40.43 Aligned_cols=239 Identities=18% Similarity=0.138 Sum_probs=143.3
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcc--hHhhhhh---hhhhcCCCChHHHhHHHHHhhCCCchhhH-------HHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAED--VIIVTSS---LTKDMTGKEDLYRAAAIRALCSITDTTMI-------QAI 144 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~lL~iNs---l~kDl~~~N~~ir~lALr~L~~i~~~~~~-------~~l 144 (323)
|.-+.+|.|..+..-+-..+.+++-..+- .+.-.+. |...+..++-.+|+.|..++.++.+-+=. ..+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 34567999999999999999999765433 2222333 77777788889999999999988765321 223
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhhhcc---ChhHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--h----hh
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFHMTKH---SPDLVK-RWVNEVQEALNSENVMVQYHALGLLYHIRKSD--Q----LA 214 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~kl~~~---~p~~v~-~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d--~----~~ 214 (323)
.++.+.-..++--|++.|.=++..+-+. -.++|. .-++-+-.++...|+.|+|-+...+..|.-.. + .+
T Consensus 170 -~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 170 -EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred -hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 3455577788899999987777765433 334554 25677888899999999888765554443211 1 11
Q ss_pred HHHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhccc--CCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcc--cC
Q psy18014 215 VTKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAAS--GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL--RR 289 (323)
Q Consensus 215 ~~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l--~~ 289 (323)
-.++|+.|.. ..-+++-.+|+-=-.+..+ ..+.+-. .......+.+++++ |++.--.+++.+-+|-.+ .+
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-asdt~Yq~eiv~ag~lP~lv~Ll----qs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNL-ASDTEYQREIVEAGSLPLLVELL----QSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhh-cccchhhhHHHhcCCchHHHHHH----hCcchhHHHHHHHHHhhccccc
Confidence 1345554431 1223555555432222211 1110000 00001234444444 567777788888888444 22
Q ss_pred CCHHhH--hhHHHHHHHHhcCCChh-hHHHHHhhh
Q psy18014 290 TSAREL--APAVSVLQLFCSSPKPV-LRFAAVRTL 321 (323)
Q Consensus 290 ~~~~~~--~~~~~~l~~~L~s~~~n-iry~aL~~l 321 (323)
-+..++ .....+|-++|..+|++ +|..|..+|
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 222232 34567788888888887 888877665
No 82
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.50 E-value=8.2 Score=33.72 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhhcc-ChhHH-HHHHH---------------HHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy18014 159 VSSAAVVSIFHMTKH-SPDLV-KRWVN---------------EVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAK 221 (323)
Q Consensus 159 VRk~A~~~~~kl~~~-~p~~v-~~~~~---------------~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~ 221 (323)
||-.|+.|+.-+.+. +|... .-|-. -+.-++.|.++.|-.+|+.++..+-+..+. +....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHHHh
Confidence 677777777766665 33322 12222 233456778888888888777666554221 1111221
Q ss_pred Hh-hccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh-cCCChhHHHHHHHHHHcccC---C---CHH
Q psy18014 222 LT-KFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL-RHKSETVVYEAAHAIVNLRR---T---SAR 293 (323)
Q Consensus 222 L~-~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~aV~~ea~k~i~~l~~---~---~~~ 293 (323)
-. ...-+.|+.. .+=.+ ...+-..|...| ...+.++.-++.|++-.+-. + +++
T Consensus 81 ~~~~~~sFtslS~-tLa~~------------------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ 141 (182)
T PF13251_consen 81 SKGPSGSFTSLSS-TLASM------------------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPG 141 (182)
T ss_pred cCCCCCCcccHHH-HHHHH------------------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHh
Confidence 11 1111122322 01011 111112222222 34567777777787766632 1 357
Q ss_pred hHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 294 ELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 294 ~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
++...+..+..++.+.|++++-+++-.+
T Consensus 142 ll~~~v~~v~~~l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 142 LLTEVVTQVRPLLRHRDPNVRVAALSCL 169 (182)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 8899999999999999999999988765
No 83
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.12 E-value=2.5 Score=36.94 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcccC-----cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCc--------------------------
Q psy18014 89 RRMVYLGIKELSNIA-----EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD-------------------------- 137 (323)
Q Consensus 89 Kkl~Ylyl~~~~~~~-----~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~-------------------------- 137 (323)
||..|-||..|-+.. +...=....+. .||++-+|..|+.+++.+..
T Consensus 19 ~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tL 95 (182)
T PF13251_consen 19 KRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTL 95 (182)
T ss_pred CceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHH
Confidence 788899999995543 11111122343 47899999999999987642
Q ss_pred hhhHHHHHHHHHHhccCC-ChHHHHHHHHHHHhhh------ccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 138 TTMIQAIERYMKQAIVDR-NSAVSSAAVVSIFHMT------KHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 138 ~~~~~~l~~~v~~~L~d~-~~yVRk~A~~~~~kl~------~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
..|+-.+.+.+..+|.+. ++-+---.+-|+.-+. +..++++.+++..+...+.++|+.|..+++.++..+
T Consensus 96 a~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 96 ASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGAL 172 (182)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 123445555555555553 3333333333333333 234577777777777777778877777776665544
No 84
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.83 E-value=16 Score=38.70 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=119.5
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCch-----hh-HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH----HH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDT-----TM-IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL----VK 179 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~-----~~-~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~----v~ 179 (323)
+..|.+=+.+.|+.+.-+++++|.++... +| ...+++.+.+.+..+++-++..|+-.++.+-- +++. ++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 33455556778999999999999888733 33 24567788899999999999999988887754 4443 33
Q ss_pred -HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh--------hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcc
Q psy18014 180 -RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL--------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAA 250 (323)
Q Consensus 180 -~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~--------~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~ 250 (323)
.+++.+..++.+.+. ...++.+||.++..+.. .+..+++.+..+ +++-.+..++..+..+-. ++..
T Consensus 371 ~GlIPkLv~LL~d~~~--~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--~~~~v~~eliaL~iNLa~-~~rn 445 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNF--REVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--SEEEVQLELIALLINLAL-NKRN 445 (708)
T ss_pred CCCcHHHHHHhCCCch--HHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--CCccccHHHHHHHHHHhc-CHHH
Confidence 367888899987653 33478889988775431 123344444322 233334444444433211 1111
Q ss_pred cC--CCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcC-CChhhHHHHHhhhc
Q psy18014 251 SG--DTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSS-PKPVLRFAAVRTLN 322 (323)
Q Consensus 251 ~~--~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s-~~~niry~aL~~l~ 322 (323)
.+ ........+++. ..+..+++++..+|.|..-+......+...+..+...+++ ++.....-+|.+|+
T Consensus 446 aqlm~~g~gL~~L~~r----a~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 446 AQLMCEGNGLQSLMKR----ALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred HHHHHhcCcHHHHHHH----HHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 00 000012222222 2345678888888888776532234555556665566665 45566666666554
No 85
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.75 E-value=3.9 Score=41.86 Aligned_cols=126 Identities=18% Similarity=0.296 Sum_probs=91.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-C--cc--hHhhhhhhh
Q psy18014 40 DTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-A--ED--VIIVTSSLT 114 (323)
Q Consensus 40 ~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~--~~--~lL~iNsl~ 114 (323)
..+.+..+.-..+++++.+.+..++=|.-.+...|.++++...|+|..+++=+.--+..+.+. . |+ +-...-.|.
T Consensus 59 k~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 59 KNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLS 138 (885)
T ss_pred cCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 446788888899999998666554444445667888999999999999988777766666443 1 23 235667788
Q ss_pred hhcCCCChHHHhHHHHHhhCCCchhh-----HHHHHHHHHHhccCCChHHHHHHHHHH
Q psy18014 115 KDMTGKEDLYRAAAIRALCSITDTTM-----IQAIERYMKQAIVDRNSAVSSAAVVSI 167 (323)
Q Consensus 115 kDl~~~N~~ir~lALr~L~~i~~~~~-----~~~l~~~v~~~L~d~~~yVRk~A~~~~ 167 (323)
+-+-|.-+.+|--|+.+||.....+. +..+...+.+ +|++.-||+.|.+-+
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vq--nDPS~EVRr~allni 194 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQ--NDPSDEVRRLALLNI 194 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCcHHHHHHHHHHHe
Confidence 88899999999999999998864332 3333444333 589999999988754
No 86
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=89.43 E-value=0.73 Score=40.00 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy18014 146 RYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKL 222 (323)
Q Consensus 146 ~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L 222 (323)
+.+.+-..+.++++|+.|+.+....+.. .+....+++.+..++.|.+..|..+.--+|.++...++....+.+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 4455555566666666666666555543 112334445555555555555555555555555555555555555443
No 87
>KOG1943|consensus
Probab=89.28 E-value=11 Score=41.09 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=111.1
Q ss_pred hHHHHHhhCCCchhhHHHHHHHHHHhccC--------CChHHHHHHHHHHHhhhccC-hhHHHHHHHH-----HHHHhcC
Q psy18014 126 AAAIRALCSITDTTMIQAIERYMKQAIVD--------RNSAVSSAAVVSIFHMTKHS-PDLVKRWVNE-----VQEALNS 191 (323)
Q Consensus 126 ~lALr~L~~i~~~~~~~~l~~~v~~~L~d--------~~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~-----l~~~l~d 191 (323)
++|--+...+..|+.++.+++-|.++|.- ....||-+||..+--+.+-+ |..++.++.. +...+-|
T Consensus 403 aLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFD 482 (1133)
T KOG1943|consen 403 ALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFD 482 (1133)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcC
Confidence 34555667888999999999999998864 33679999999888887766 6666554442 4566778
Q ss_pred CChHHHHHHHHHHHHHHhc-----ChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHH-HHH
Q psy18014 192 ENVMVQYHALGLLYHIRKS-----DQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLF-DYL 265 (323)
Q Consensus 192 ~~~~V~~~al~ll~~l~~~-----d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~-~~l 265 (323)
++-.+-.+|.|++.|..-. ++.++...+..+......+.|.++ -+.++.+ |. ..+.++ .++
T Consensus 483 revncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l--~~~ia~~----~~-------y~~~~f~~L~ 549 (1133)
T KOG1943|consen 483 REVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDL--CVSIAEF----SG-------YREPVFNHLL 549 (1133)
T ss_pred chhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHH--hHHHHhh----hh-------HHHHHHHHHH
Confidence 8888999998888887533 233333333333333334556542 1222212 21 123333 344
Q ss_pred HHHhcCCChhHHHHHHHHHHcccCCCHHhHh-hHHHHHHHHhcCCChhhHHHH
Q psy18014 266 ETCLRHKSETVVYEAAHAIVNLRRTSARELA-PAVSVLQLFCSSPKPVLRFAA 317 (323)
Q Consensus 266 ~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~-~~~~~l~~~L~s~~~niry~a 317 (323)
...+.|=+..+-..++.++..+....+.... ....++.....++|.+.|+.+
T Consensus 550 t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 550 TKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGV 602 (1133)
T ss_pred hcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhh
Confidence 4457788899999999999887644344432 333344444444666666543
No 88
>KOG0567|consensus
Probab=89.17 E-value=19 Score=33.46 Aligned_cols=233 Identities=20% Similarity=0.235 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAI 129 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lAL 129 (323)
+..+.++.+=+.|...+ .-.+++.+-.+.-.+|-=+-+++..... ++++-+.-...+|. +.-|+||--|=
T Consensus 21 ~r~rALf~Lr~l~~~~~-------i~~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~de-sq~pmvRhEAa 90 (289)
T KOG0567|consen 21 NRFRALFNLRNLLGPAA-------IKAITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDE-SQEPMVRHEAA 90 (289)
T ss_pred HHHHHHHhhhccCChHH-------HHHHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhccc-ccchHHHHHHH
Confidence 55667777777765422 2234566666555555444445554422 23332222333343 34699999999
Q ss_pred HHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc---------------cChhH--HHHHHHHHHHHhcCC
Q psy18014 130 RALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK---------------HSPDL--VKRWVNEVQEALNSE 192 (323)
Q Consensus 130 r~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~---------------~~p~~--v~~~~~~l~~~l~d~ 192 (323)
-+|+.++.++..+.+.++. .|+-..||-+.-.|+.++-. .+|.- ..+-+.+++..+.|.
T Consensus 91 ealga~~~~~~~~~l~k~~----~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~ 166 (289)
T KOG0567|consen 91 EALGAIGDPESLEILTKYI----KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDE 166 (289)
T ss_pred HHHHhhcchhhHHHHHHHh----cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhc
Confidence 9999999998888887776 68889999997777765421 12211 122355566555555
Q ss_pred ChHHHHHHHHHHHHHHhcCh-hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcC
Q psy18014 193 NVMVQYHALGLLYHIRKSDQ-LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRH 271 (323)
Q Consensus 193 ~~~V~~~al~ll~~l~~~d~-~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 271 (323)
+-..-+- -..++.++..++ .++.-++..+.. .+...+...=-.++.+ + .|.. ...+.+.|.. ..
T Consensus 167 t~~l~~R-y~amF~LRn~g~EeaI~al~~~l~~---~SalfrhEvAfVfGQl-~-s~~a-------i~~L~k~L~d--~~ 231 (289)
T KOG0567|consen 167 TKPLFER-YRAMFYLRNIGTEEAINALIDGLAD---DSALFRHEVAFVFGQL-Q-SPAA-------IPSLIKVLLD--ET 231 (289)
T ss_pred chhHHHH-HhhhhHhhccCcHHHHHHHHHhccc---chHHHHHHHHHHHhhc-c-chhh-------hHHHHHHHHh--hh
Confidence 4322211 144555665543 334555555542 2444444433333322 1 2221 4555555554 45
Q ss_pred CChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHH
Q psy18014 272 KSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAA 317 (323)
Q Consensus 272 ~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~a 317 (323)
.+++|.-||+.++-.+.. ..+++.|+.++...++.++-.+
T Consensus 232 E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred cchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHHH
Confidence 789999999999888865 3567788888888888777543
No 89
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.84 E-value=1.6 Score=44.93 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=61.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHH-HHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEV-QEA 188 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l-~~~ 188 (323)
.+.+.+-.+..+..-+-.+||+|++++.++.++.+.+.+...- +.++.+|-.|+.|+-++-...|+.+.+.+-.+ .+
T Consensus 492 ~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n- 569 (618)
T PF01347_consen 492 EQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN- 569 (618)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH--
T ss_pred HHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC-
Confidence 3444444456678899999999999999999988887665543 56899999999999999888888776543333 22
Q ss_pred hcCCChHHHHHHHHHH
Q psy18014 189 LNSENVMVQYHALGLL 204 (323)
Q Consensus 189 l~d~~~~V~~~al~ll 204 (323)
...++-|-.+|..++
T Consensus 570 -~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 570 -TTEDPEVRIAAYLIL 584 (618)
T ss_dssp -TTS-HHHHHHHHHHH
T ss_pred -CCCChhHHHHHHHHH
Confidence 123456666665443
No 90
>KOG1240|consensus
Probab=88.49 E-value=10 Score=41.87 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=95.4
Q ss_pred HHHhhcCCCchhHHHHHHHHHHh----ccc-CcchHhhhhhhhhhcCCCChHHHhHHHHHhh----CCCchhhHHHHHHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKEL----SNI-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALC----SITDTTMIQAIERY 147 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~----~~~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~----~i~~~~~~~~l~~~ 147 (323)
++.++.-++..+||-.--.+..+ ++. ..+.+|. .|.--|+|..+..||.=.-++. .++..+.-+++.+.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLs--hLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILS--HLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHH--HHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 34455556667787665443322 443 4555442 2333456668999999888887 45566789999999
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhcc---ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKH---SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~---~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
+.++|.|..+.|-=+|+-|+--|++. ..-.+.+++..+.-+|+..|.=+-..++.++..+.++
T Consensus 661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999998887666543 3456668888888889999988888888888877554
No 91
>KOG2160|consensus
Probab=88.44 E-value=11 Score=36.15 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=64.4
Q ss_pred hcCCCChHHHhHHHHHhhCCCc--hhhHHHH-----HHHHHHhcc-CCChHHHHHHHHHHHhhhccChhHHHHHHH----
Q psy18014 116 DMTGKEDLYRAAAIRALCSITD--TTMIQAI-----ERYMKQAIV-DRNSAVSSAAVVSIFHMTKHSPDLVKRWVN---- 183 (323)
Q Consensus 116 Dl~~~N~~ir~lALr~L~~i~~--~~~~~~l-----~~~v~~~L~-d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~---- 183 (323)
-++++++.+|..|.+.++.... |..-+.+ .+.+.+.|. +.+-.||++|+.|+..+++.++.....|+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 6789999999999999987642 2222222 234444454 455778999999999999999887776543
Q ss_pred -HHHHHhcCCCh--HHHHHHHHHHHHHH
Q psy18014 184 -EVQEALNSENV--MVQYHALGLLYHIR 208 (323)
Q Consensus 184 -~l~~~l~d~~~--~V~~~al~ll~~l~ 208 (323)
-+.+++.+.+. ....-++.++..+-
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 58888888554 44444555655553
No 92
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.88 E-value=16 Score=35.15 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=101.8
Q ss_pred HHccCCCCChHHHHHHHHHHHHHHHcCCCCC--chhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchH-hhhh-
Q psy18014 36 RTFNDTPVNPKKCTHILTKILYLINQGEQLG--TQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVI-IVTS- 111 (323)
Q Consensus 36 ~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~--~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~l-L~iN- 111 (323)
.-|.++..+.+-. ...+=.+..+-.|.+-+ ..-++...+..-|++.+.|.++--=.|-+++-+.+-+.|.+ .+++
T Consensus 206 ~ll~ss~~~isml-Rn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~ 284 (526)
T COG5064 206 GLLLSSAIHISML-RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDV 284 (526)
T ss_pred HHHHhccchHHHH-HHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhc
Confidence 3445554444444 55667889999996411 23356667778899999999988888888876766554432 2233
Q ss_pred ----hhhhhcCCCChHHHhHHHHHhhCCCchhhHH-------HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH
Q psy18014 112 ----SLTKDMTGKEDLYRAAAIRALCSITDTTMIQ-------AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK 179 (323)
Q Consensus 112 ----sl~kDl~~~N~~ir~lALr~L~~i~~~~~~~-------~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~ 179 (323)
-|.-=|.|+...|..=|||.+++|.+-+=.+ -..+.+...|.++...+||-||-.+-.+--.+-+.+.
T Consensus 285 g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq 363 (526)
T COG5064 285 GIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ 363 (526)
T ss_pred CCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence 3556678999999999999999998654322 2456777889999999999999988888766665553
No 93
>KOG1949|consensus
Probab=87.87 E-value=6.9 Score=40.91 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=86.6
Q ss_pred CchhhHHHHH-HHHHHhccCCChHHHHHHHHHHHhhhcc-ChhH--------HHHHHHHHHHHhcCCChHHHHHHH-HH-
Q psy18014 136 TDTTMIQAIE-RYMKQAIVDRNSAVSSAAVVSIFHMTKH-SPDL--------VKRWVNEVQEALNSENVMVQYHAL-GL- 203 (323)
Q Consensus 136 ~~~~~~~~l~-~~v~~~L~d~~~yVRk~A~~~~~kl~~~-~p~~--------v~~~~~~l~~~l~d~~~~V~~~al-~l- 203 (323)
+.++|+-.+. +.+-++|.-+|..||.+|+.-...+|+. +||. +++=+.++.++|.|.-|+|-+-|+ ++
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3456665555 6677999999999999999999999975 4665 224466789999999999987773 22
Q ss_pred --HHHHHhc-ChhhHHHH----HHHHhhccCCCh-HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChh
Q psy18014 204 --LYHIRKS-DQLAVTKL----VAKLTKFTMKSP-YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSET 275 (323)
Q Consensus 204 --l~~l~~~-d~~~~~~l----v~~L~~~~~~~~-~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~a 275 (323)
.++...- .+..+.++ +..+......+- .....-|.++. ..|.. ..-.+.++..+.+.|+-++..
T Consensus 246 k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l----~np~s----h~~le~~Lpal~~~l~D~se~ 317 (1005)
T KOG1949|consen 246 KITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMIL----DNPLS----HPLLEQLLPALRYSLHDNSEK 317 (1005)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHH----cCccc----hhHHHHHHHhcchhhhccchh
Confidence 2222211 12222222 333322211110 22223333322 12321 113455556666666777888
Q ss_pred HHHHHHHHHHcccCC
Q psy18014 276 VVYEAAHAIVNLRRT 290 (323)
Q Consensus 276 V~~ea~k~i~~l~~~ 290 (323)
|...++..++.+...
T Consensus 318 VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 318 VRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888877653
No 94
>KOG0946|consensus
Probab=87.84 E-value=15 Score=39.04 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=93.2
Q ss_pred cCCCchhHHHHHHHHHHhcc-cCcch-H----hhhhhhhhhcCCCChHHHhHHHHHhhCCCchh----------------
Q psy18014 82 QSKDVILRRMVYLGIKELSN-IAEDV-I----IVTSSLTKDMTGKEDLYRAAAIRALCSITDTT---------------- 139 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~-~~~~~-l----L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~---------------- 139 (323)
.|+=++.||=.-..++.+++ ..+++ . -.|++|++|-. +|-+-+-||-+++.+...+
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g 110 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG 110 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence 55667889999999999976 34442 2 36899999987 5788899999999876443
Q ss_pred --hH------HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH-------HHHHHHHHhcCCChHHHHHHHHHH
Q psy18014 140 --MI------QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-------WVNEVQEALNSENVMVQYHALGLL 204 (323)
Q Consensus 140 --~~------~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-------~~~~l~~~l~d~~~~V~~~al~ll 204 (323)
++ +..+..+.+.+.+.+=+||..|+--+-.+...-|.-+++ -+..+.++|.|.--.+--.|+-+|
T Consensus 111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 11 455677888899999999999987666666655544443 456677788777655566667777
Q ss_pred HHHHhcC
Q psy18014 205 YHIRKSD 211 (323)
Q Consensus 205 ~~l~~~d 211 (323)
.++.+.+
T Consensus 191 ~eL~k~n 197 (970)
T KOG0946|consen 191 SELVKDN 197 (970)
T ss_pred HHHHccC
Confidence 7777654
No 95
>KOG0213|consensus
Probab=87.64 E-value=28 Score=36.96 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=112.3
Q ss_pred HHHHhhhhcCCCCCchhhHHHHHHHHHHcc-------------CCCCChHHHHHHHHHHHHHHHcCCC-CCchhhhhhHH
Q psy18014 10 IQQLLRYKRTGNPFQNLDKTAVLQEARTFN-------------DTPVNPKKCTHILTKILYLINQGEQ-LGTQEATDAFF 75 (323)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ek~~i~qe~~~f~-------------~~~~~~~k~~~~l~kli~~~~~G~~-~~~~e~s~lf~ 75 (323)
.+.+++-|+|+.|--...-+.+-...+.|- +..++... |..|.|+|--+.-|-| ...--+..+.+
T Consensus 366 ~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqe-rhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 366 MRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQE-RHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchh-hhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 344556778887744333333333334442 11222222 2555555444443422 11111223333
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCC
Q psy18014 76 AMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDR 155 (323)
Q Consensus 76 ~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~ 155 (323)
.+-.++--.|+.-+-.+---+.++++....+.+ +.+++-|+.+..||+|--+=|+.+-+.+.==++.+.+.++....++
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~m-istmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATM-ISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSK 523 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHH-HHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccc
Confidence 333445556776666666667777665555555 4599999999999999999998887766666777888888888887
Q ss_pred -ChHHHHHHHHHHHhhhccC-h---hHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHH
Q psy18014 156 -NSAVSSAAVVSIFHMTKHS-P---DLVKRWVNEVQEALNSENV---MVQYHALGLLYHI 207 (323)
Q Consensus 156 -~~yVRk~A~~~~~kl~~~~-p---~~v~~~~~~l~~~l~d~~~---~V~~~al~ll~~l 207 (323)
+---|.+.+-|+-++.... . ..++.+++-+...+.|++. .+.++|++.+.+.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHh
Confidence 5556666665555544221 1 2234566667777788765 3344455555544
No 96
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=87.52 E-value=24 Score=34.14 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=132.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCch-hhHHHH------HHHHHHhccCCCh--HHHHHHHHHHHhhhcc-Ch----
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDT-TMIQAI------ERYMKQAIVDRNS--AVSSAAVVSIFHMTKH-SP---- 175 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~-~~~~~l------~~~v~~~L~d~~~--yVRk~A~~~~~kl~~~-~p---- 175 (323)
+.-|.+=|.+++.-+|--|.=+|++|... +++.+. ..++...|.++.+ -.-++|--.+-.+++. +|
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 44577778899999999999999999755 444432 3567777777666 4456666677788853 23
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q psy18014 176 DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIED 246 (323)
Q Consensus 176 ~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~ 246 (323)
.-+...++-+-+++...|+-|+..|.=++..+....... ..+|++-|.. .+.-.|.-.||.+..++..
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccCHHHHhhcCeeec
Confidence 346678899999999999988888765555554332111 1566666642 2334566677887765332
Q ss_pred hhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHH
Q psy18014 247 QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAA 317 (323)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~a 317 (323)
+... +.---...+++.+.++|++.-.-+.-||+=||..++....+.. .-.+.+|-.+|++-+--+|=-|
T Consensus 316 ~D~Q--TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 316 SDDQ--TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred Cccc--eehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 1111 0000124557788888999999999999999999975333322 3455677777776655554433
No 97
>KOG1820|consensus
Probab=87.49 E-value=25 Score=37.81 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=123.5
Q ss_pred CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-hHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 136 TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-DLVKR----WVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 136 ~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-~~v~~----~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
...++..-+.+.+...+.|++---|+.|+-.+...+.... +..+. +...+.-.+.|.|-.|+..|+..+..|...
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3446777888899999999999999999999999887665 34432 344455566788888888888888888766
Q ss_pred ChhhHHHHHHHHh-----hccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHH
Q psy18014 211 DQLAVTKLVAKLT-----KFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285 (323)
Q Consensus 211 d~~~~~~lv~~L~-----~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~ 285 (323)
-+....+++.... ...-.-+...-.++.++-.+.+..+ ...+.+.+...+++.|+.+.-||...+-
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------l~~~~~~I~e~lk~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------LSKMSEAILEALKGKNPQIKGECLLLLD 396 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 5555544444321 1112233445556666555544332 6888899999999999999999887765
Q ss_pred cccC------CCHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 286 NLRR------TSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 286 ~l~~------~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.... .........+..+-...+..+..+|-+|++.+
T Consensus 397 r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred HHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 5421 12234566777777777788999999998875
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.22 E-value=9.6 Score=29.40 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhhhccCh-h--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh-HHHHHH
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-D--LVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA-VTKLVA 220 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-~--~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~-~~~lv~ 220 (323)
.+.+...+.|+.+-||-.|+.-+-++++... . .+...+.-+.+.+.|.|+-|=.+|+..+..+....+.. +..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 3456667889999999999999999997665 2 33467777888999999999999988888877665553 344443
No 99
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.21 E-value=6.8 Score=36.91 Aligned_cols=101 Identities=17% Similarity=0.238 Sum_probs=66.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCch----------hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH-
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDT----------TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV- 178 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~----------~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v- 178 (323)
...|.+-+++++++++-.|.+.++.+... +.++.+...++..+.+.+.-+...|+-|+..+.+. ++.-
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~ 185 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQ 185 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHH
Confidence 35567788889999999999999888433 56777777777767666677778888888877643 3221
Q ss_pred ----HHHHHHHHHHh-----cC--CChHHHHHHHHHHHHHHhcC
Q psy18014 179 ----KRWVNEVQEAL-----NS--ENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 179 ----~~~~~~l~~~l-----~d--~~~~V~~~al~ll~~l~~~d 211 (323)
.+.++.+.+.+ .+ .+..++|+++-.++.+.-++
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~ 229 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEP 229 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCH
Confidence 24566666666 22 24588999998888887653
No 100
>KOG1248|consensus
Probab=87.17 E-value=22 Score=39.27 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCc----chH--hhhhhhhhhcCCCChH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAE----DVI--IVTSSLTKDMTGKEDL 123 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~----~~l--L~iNsl~kDl~~~N~~ 123 (323)
+.|..++.. --|+.+.+-....+|-.+...+++.+...++=-|-.|..+-+..+ +.+ ++.+.+..= ++.|..
T Consensus 676 rlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~ 753 (1176)
T KOG1248|consen 676 RLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVK 753 (1176)
T ss_pred HHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHH
Confidence 344444433 224445555667888889999999999999888888887755322 222 334444433 777889
Q ss_pred HHhHHHHHhhCCC------------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-----hhHHHHHHHHHH
Q psy18014 124 YRAAAIRALCSIT------------DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-----PDLVKRWVNEVQ 186 (323)
Q Consensus 124 ir~lALr~L~~i~------------~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-----p~~v~~~~~~l~ 186 (323)
-|-.|.-+|-.|. .++.++.++.-|..++.-.++.++-.-++++.+++... -+.+.+.++.+.
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~ 833 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVC 833 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999988877776 25688889999999999888888888788888888543 455667888888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhcChhh
Q psy18014 187 EALNSENVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 187 ~~l~d~~~~V~~~al~ll~~l~~~d~~~ 214 (323)
-.|..+++.+.-+|++++--+....+..
T Consensus 834 ~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 834 LYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 8999999999999988876665554433
No 101
>KOG1077|consensus
Probab=86.73 E-value=31 Score=36.28 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=62.8
Q ss_pred HHHHhhCCC-chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC--hhHHHHHHHHHHHHhc-CCChHHHHHHHHH
Q psy18014 128 AIRALCSIT-DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS--PDLVKRWVNEVQEALN-SENVMVQYHALGL 203 (323)
Q Consensus 128 ALr~L~~i~-~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~--p~~v~~~~~~l~~~l~-d~~~~V~~~al~l 203 (323)
|+.....+. .+++.......+.+.|.|+.+.+|=-|+-.+.++...- -|.++.-.+.+-..|. ++|-+|.--|+-+
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 445555554 45888888888999999999999988888888887543 4667766666766777 8888888888999
Q ss_pred HHHHHh
Q psy18014 204 LYHIRK 209 (323)
Q Consensus 204 l~~l~~ 209 (323)
||.++.
T Consensus 393 LY~mcD 398 (938)
T KOG1077|consen 393 LYAMCD 398 (938)
T ss_pred HHHHhc
Confidence 998874
No 102
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.43 E-value=0.58 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=21.6
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCC
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSI 135 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i 135 (323)
++.+.+=++|++|.||-.|..+++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 46778888999999999999999865
No 103
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.92 E-value=8.9 Score=37.31 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=44.6
Q ss_pred hhhhhhhcC---CCChHHHhHHHHHhhCC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHH
Q psy18014 110 TSSLTKDMT---GKEDLYRAAAIRALCSI---TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSI 167 (323)
Q Consensus 110 iNsl~kDl~---~~N~~ir~lALr~L~~i---~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~ 167 (323)
.+.+.-|++ +..|.+|+-|++++... .+++....+.+.+.+.|.+++.-|+.-|+.|+
T Consensus 307 ~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 307 SQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 444555665 66799999999998754 46788899999999999999999999999875
No 104
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=84.87 E-value=36 Score=32.30 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=47.4
Q ss_pred CChHHHhHHHHHhhCCC---chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc----cC-hhHHHHHHHHHHHHh
Q psy18014 120 KEDLYRAAAIRALCSIT---DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK----HS-PDLVKRWVNEVQEAL 189 (323)
Q Consensus 120 ~N~~ir~lALr~L~~i~---~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~----~~-p~~v~~~~~~l~~~l 189 (323)
.||-....++.+++.=. ..++-..+...+++++.|+.+-|||.-+.+++.++. .. ...++.+.+.+.+.+
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 45555544444443221 567788899999999999999999999999999885 22 334445555544444
No 105
>KOG4500|consensus
Probab=84.46 E-value=19 Score=35.75 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCC-CCchhhhh-hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchH-hhhhh--------hhh-hcCC
Q psy18014 52 LTKILYLINQGEQ-LGTQEATD-AFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVI-IVTSS--------LTK-DMTG 119 (323)
Q Consensus 52 l~kli~~~~~G~~-~~~~e~s~-lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~l-L~iNs--------l~k-Dl~~ 119 (323)
...++.++..|++ +-.+.... +|-.++..+.|+|+.+--+|-|++.+|+...+..+ ++=|- +.+ ---+
T Consensus 293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd 372 (604)
T KOG4500|consen 293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD 372 (604)
T ss_pred hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456777788865 11122233 44458899999999999999999999988655532 44333 333 2234
Q ss_pred CChHHHhHHHHHhhCCCchh-----hHHH-HHHHHHHhccCCChHHHHHHHHHHHhhhccChh-HHH------HHHHHHH
Q psy18014 120 KEDLYRAAAIRALCSITDTT-----MIQA-IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD-LVK------RWVNEVQ 186 (323)
Q Consensus 120 ~N~~ir~lALr~L~~i~~~~-----~~~~-l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~-~v~------~~~~~l~ 186 (323)
.|--.+-.+|.+|-++..|- |+++ +...|..-+....|-|--+ .++-+++.....| +.. +.++.+.
T Consensus 373 gnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fk-llgTlrM~~d~qe~~a~eL~kn~~l~ekLv 451 (604)
T KOG4500|consen 373 GNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFK-LLGTLRMIRDSQEYIACELAKNPELFEKLV 451 (604)
T ss_pred ccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHH-HHHHHHHHHhchHHHHHHHhcCHHHHHHHH
Confidence 46666666666666655442 3332 2233333333344444333 4566676665544 222 3556666
Q ss_pred HHhcCCCh-HHHHHHHHHHHHHHhc
Q psy18014 187 EALNSENV-MVQYHALGLLYHIRKS 210 (323)
Q Consensus 187 ~~l~d~~~-~V~~~al~ll~~l~~~ 210 (323)
+-....|. +|..-+..++.-+.++
T Consensus 452 ~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 452 DWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HhhhCCccchhhhhhhHHHHHHHHh
Confidence 66666664 6888886665544433
No 106
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=84.46 E-value=9.1 Score=34.79 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=40.5
Q ss_pred hccCCChHHHHHHHHHHHhhhccC-------hhHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 151 AIVDRNSAVSSAAVVSIFHMTKHS-------PDLVK------RWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 151 ~L~d~~~yVRk~A~~~~~kl~~~~-------p~~v~------~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
++.|.+|.|.|.|+.|+..+|+.. ++.-+ .+.+.+-..+.+.+++|-.+++-++..+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~v 70 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERV 70 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 478999999999999999888643 22222 3455666678888999998887665443
No 107
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.44 E-value=2.9 Score=36.55 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 139 ~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
.+++.+..+++++|+.+++-|..+++.++-+|...++.+-+.+.+..++++
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 467889999999999999999999999999997776666666667666544
No 108
>KOG2259|consensus
Probab=83.91 E-value=6.3 Score=40.85 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=71.1
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~ 187 (323)
|-.+..-+.|.=--||-.|.-++|++.. |.++.....++...++|.-..||=.|+.++-++... -.+-++-++.+-+
T Consensus 375 CGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~ 453 (823)
T KOG2259|consen 375 CGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILE 453 (823)
T ss_pred cceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHH
Confidence 3444444455445688888888888877 888888888888888888888888888887776543 3333456677777
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcChhh
Q psy18014 188 ALNSENVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 188 ~l~d~~~~V~~~al~ll~~l~~~d~~~ 214 (323)
.|.|.++.|-.+...+|...+-.|...
T Consensus 454 ~L~D~s~dvRe~l~elL~~~~~~d~~~ 480 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKNARVSDLEC 480 (823)
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHH
Confidence 777777776666555555444444433
No 109
>KOG4653|consensus
Probab=83.15 E-value=33 Score=36.80 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=55.4
Q ss_pred hcCCCChHHHhHHHHHhhCCCc------hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH-HHHHH
Q psy18014 116 DMTGKEDLYRAAAIRALCSITD------TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV-KRWVN 183 (323)
Q Consensus 116 Dl~~~N~~ir~lALr~L~~i~~------~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v-~~~~~ 183 (323)
-+.|+-+-+||-||+.|..+.. -.+-+-+.......+.|.++||==+|+-++.-|++.+|+-+ +++.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e 809 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE 809 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4567788999999999998765 34567788889999999999999999999998988888754 34333
No 110
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.99 E-value=16 Score=37.94 Aligned_cols=162 Identities=12% Similarity=0.159 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHh-cc---cCcchHhhhhhhhhhcCCCChHHH
Q psy18014 50 HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKEL-SN---IAEDVIIVTSSLTKDMTGKEDLYR 125 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~-~~---~~~~~lL~iNsl~kDl~~~N~~ir 125 (323)
..+.|++..+-. -+|++-+..-++-.+...||.+|-+.+-+.=-|-... +. ..+-.-++++++.|-++|+.|.+|
T Consensus 543 ~~vsri~~~lg~-~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR 621 (975)
T COG5181 543 GLVSRIFSRLGR-LGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVR 621 (975)
T ss_pred HHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHH
Confidence 456666664322 3577766677777788889988877764432111111 11 134455789999999999999999
Q ss_pred hHHHHHhhCCC-------chhhHHHHHHHHHHhccCCChHHHHHH---HHHHHhhhccC--hhHHHHHHHHHHHHhcCCC
Q psy18014 126 AAAIRALCSIT-------DTTMIQAIERYMKQAIVDRNSAVSSAA---VVSIFHMTKHS--PDLVKRWVNEVQEALNSEN 193 (323)
Q Consensus 126 ~lALr~L~~i~-------~~~~~~~l~~~v~~~L~d~~~yVRk~A---~~~~~kl~~~~--p~~v~~~~~~l~~~l~d~~ 193 (323)
--|..+++++. ..++...+-.-+-+.|..-.|-|.-.- +.|++...+.. ..=+..+++.+.-.|.++.
T Consensus 622 ~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh 701 (975)
T COG5181 622 IRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKH 701 (975)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhh
Confidence 99999888764 356677777778888888888887654 44444444333 1124467888888888888
Q ss_pred hHHHHHHHHHHHHHHhcCh
Q psy18014 194 VMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 194 ~~V~~~al~ll~~l~~~d~ 212 (323)
.-|+.+.++++..|..+.+
T Consensus 702 ~Kv~~nti~lvg~I~~~~p 720 (975)
T COG5181 702 QKVVANTIALVGTICMNSP 720 (975)
T ss_pred HHHhhhHHHHHHHHHhcCc
Confidence 8999999999999987765
No 111
>KOG2062|consensus
Probab=81.95 E-value=56 Score=34.67 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=97.9
Q ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHH-Hh-cccCcchH
Q psy18014 30 AVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIK-EL-SNIAEDVI 107 (323)
Q Consensus 30 ~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~-~~-~~~~~~~l 107 (323)
..+.|+......- ...|..+++.-=|++.+.|.. .++ -.-|.+++..+|+.+|+-|-+.+. -| +..+..+
T Consensus 484 eaiedm~~Ya~ET-QHeki~RGl~vGiaL~~ygrq---e~A---d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka- 555 (929)
T KOG2062|consen 484 EAIEDMLTYAQET-QHEKIIRGLAVGIALVVYGRQ---EDA---DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA- 555 (929)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHhHHHHHhhhh---hhh---HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh-
Confidence 4455666555432 335556777777777777742 122 233567789999999988766533 23 2222111
Q ss_pred hhhhhhhhh-cCCCChHHHhHHHHHhhC--CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHH
Q psy18014 108 IVTSSLTKD-MTGKEDLYRAAAIRALCS--ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184 (323)
Q Consensus 108 L~iNsl~kD-l~~~N~~ir~lALr~L~~--i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~ 184 (323)
|..+..= .+|+|+-||-.|.-+++= .++|+.+...+..+.+ +-||+||=.|++++.-.+-.... +..++-
T Consensus 556 --ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG~--~eAi~l 628 (929)
T KOG2062|consen 556 --IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE---SYNPHVRYGAAMALGIACAGTGL--KEAINL 628 (929)
T ss_pred --HHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh---hcChhhhhhHHHHHhhhhcCCCc--HHHHHH
Confidence 1222222 468899999999988874 4677777766666555 57799999999988765543322 124455
Q ss_pred HHHHhcCCChHHHHHHH
Q psy18014 185 VQEALNSENVMVQYHAL 201 (323)
Q Consensus 185 l~~~l~d~~~~V~~~al 201 (323)
+..+..|....|--.|+
T Consensus 629 Lepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 629 LEPLTSDPVDFVRQGAL 645 (929)
T ss_pred HhhhhcChHHHHHHHHH
Confidence 56666777767766664
No 112
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.74 E-value=2.1 Score=27.96 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCCChHHHHHHHH
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVV 165 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~ 165 (323)
+.+...|.+.+.|++|-||++|+-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 477888999999999999999874
No 113
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=13 Score=38.26 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=62.1
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHh----hCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRAL----CSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L----~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~ 184 (323)
.||-+..|.. +..|....=++ |.-.....+..+.+ =+.+|.+..||++|++|+.-++..+|+.+-..++-
T Consensus 520 ~I~ell~d~d---s~lRy~G~fs~alAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvel 593 (926)
T COG5116 520 YINELLYDKD---SILRYNGVFSLALAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVEL 593 (926)
T ss_pred HHHHHhcCch---HHhhhccHHHHHHHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEecCcchhhHHHHH
Confidence 5666655554 45554333222 22233334444433 35789999999999999999999999876443333
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHH-hcChhhHHHHHHHHh
Q psy18014 185 VQEALNSENVMVQYHALGLLYHIR-KSDQLAVTKLVAKLT 223 (323)
Q Consensus 185 l~~~l~d~~~~V~~~al~ll~~l~-~~d~~~~~~lv~~L~ 223 (323)
+ ..+.|+.|-+....+|-.-+ ..+......++..|.
T Consensus 594 L---s~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~ 630 (926)
T COG5116 594 L---SESHNFHVRAGVAVALGIACAGTGDKVATDILEALM 630 (926)
T ss_pred h---hhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHh
Confidence 3 34567777666533343333 334445566666664
No 114
>KOG0413|consensus
Probab=80.43 E-value=7.3 Score=42.16 Aligned_cols=132 Identities=13% Similarity=0.232 Sum_probs=89.7
Q ss_pred hHHHhHHHHHhhCC--CchhhHHHHHH-HHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHH
Q psy18014 122 DLYRAAAIRALCSI--TDTTMIQAIER-YMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQY 198 (323)
Q Consensus 122 ~~ir~lALr~L~~i--~~~~~~~~l~~-~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~ 198 (323)
|.+|+-+.-||+++ ....++--..+ .++++=......||.+-++++.-++-.+--+++++++.+...|+|.++.|--
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 78899999888865 44566663333 3444444566889999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHH-HHHhcCCChhHH
Q psy18014 199 HALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYL-ETCLRHKSETVV 277 (323)
Q Consensus 199 ~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~~~~aV~ 277 (323)
+++.+|..+-+.+ ...|.+ ...+|++..++..++ +...+-+++ ..+|+..+|-..
T Consensus 1025 qt~ilL~rLLq~~------------~vKw~G----~Lf~Rf~l~l~D~~e--------dIr~~a~f~~~~vL~~~~P~~f 1080 (1529)
T KOG0413|consen 1025 QTIILLARLLQFG------------IVKWNG----ELFIRFMLALLDANE--------DIRNDAKFYISEVLQSEEPNFF 1080 (1529)
T ss_pred HHHHHHHHHHhhh------------hhhcch----hhHHHHHHHHcccCH--------HHHHHHHHHHHHHHhhcCccch
Confidence 9987766554322 113444 455677765543222 245555543 446666665433
No 115
>KOG1820|consensus
Probab=79.66 E-value=84 Score=33.92 Aligned_cols=200 Identities=15% Similarity=0.182 Sum_probs=130.7
Q ss_pred CCCchhhHHHHHHHH-----HHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHh-hcCCCchhHHHHHH
Q psy18014 21 NPFQNLDKTAVLQEA-----RTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL-FQSKDVILRRMVYL 94 (323)
Q Consensus 21 ~~~~~~ek~~i~qe~-----~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl-~~s~d~~lKkl~Yl 94 (323)
..|.-.++.++...+ ..+.++ +-+.+++++..++..+..-..-.+.-.+.+..-.++. ..-.|..+..+--.
T Consensus 240 d~~d~l~~~di~~ki~~~l~t~~~s~--~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~ 317 (815)
T KOG1820|consen 240 DNFDLLPRVDILSKITKNLETEMLSK--KWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQ 317 (815)
T ss_pred cccccCchhhhhhhcChHHHHhhhcc--chHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHH
Confidence 456666677777663 223333 2233346777766666543200111223333333333 33455666666666
Q ss_pred HHHHhccc-C----cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHh
Q psy18014 95 GIKELSNI-A----EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFH 169 (323)
Q Consensus 95 yl~~~~~~-~----~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~k 169 (323)
++..++.. . +-+..+.|.|..=+.+..+.+|-.++.++=.+....-...+.+.|..++.+++|-+|--...-.-+
T Consensus 318 ~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 318 ILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred HHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 66666542 2 335678889999999999999988888877777777788889999999999999999887776667
Q ss_pred hhccCh------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-hcChhhHHHHHHHH
Q psy18014 170 MTKHSP------DLVKRWVNEVQEALNSENVMVQYHALGLLYHIR-KSDQLAVTKLVAKL 222 (323)
Q Consensus 170 l~~~~p------~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~-~~d~~~~~~lv~~L 222 (323)
.++... +.++...+.+....+|.+.-|--+|+..+..+. ..+...+.+++..+
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 665554 345678899999999999999888877665553 33334444555444
No 116
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.18 E-value=40 Score=28.90 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=58.4
Q ss_pred cCCCChHHHhHHHHHhhCCCch-hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q psy18014 117 MTGKEDLYRAAAIRALCSITDT-TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 117 l~~~N~~ir~lALr~L~~i~~~-~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~ 187 (323)
..|+|+..|-.|.-++...... .-.+.+...+...+.|.+.||+|+..-++-.+...+|+.+.+|+.....
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 3678898888888877775554 6788888889999999999999999988888999999988888776653
No 117
>KOG1020|consensus
Probab=78.51 E-value=54 Score=37.41 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHH
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTK 217 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~ 217 (323)
....+.|...+..+.+.||.+|.-|+-.+...+|.+.. +....+..-++|...+|--+|+-++....-.++..+.+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 44455566777888999999999999999999998763 57778888899999999999988776444334443333
No 118
>KOG2032|consensus
Probab=77.91 E-value=15 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=71.8
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCCch------hhHHHHHHHHHHhccCCC-hHHHHHHHHHHHhhhccCh-hHHH----
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSITDT------TMIQAIERYMKQAIVDRN-SAVSSAAVVSIFHMTKHSP-DLVK---- 179 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~~~------~~~~~l~~~v~~~L~d~~-~yVRk~A~~~~~kl~~~~p-~~v~---- 179 (323)
++.+-.+|||..+|++|+|.|++...- .+...++..|..+|-|.+ .-|-=.|+.|+.++.++.. +-++
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 445556899999999999999988654 556777777777777754 6777777777777664432 2233
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 180 RWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 180 ~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
....+++.+..+.++.+-++|+.++..+.+
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 456678889999999998888877666543
No 119
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.90 E-value=13 Score=29.33 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHH
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLV 219 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv 219 (323)
|.++-.+..+---...+.-+..+....++..+..+..+.+-+.+.||.+++-||.++..+.++.+..+...+
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 344444433222333344455555556777778888888889999999999999999999888777664433
No 120
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=77.48 E-value=80 Score=31.44 Aligned_cols=26 Identities=12% Similarity=0.223 Sum_probs=22.8
Q ss_pred hHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 297 PAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 297 ~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.+...+-.+++++|+++||-||.++-
T Consensus 396 g~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 396 GGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 37788899999999999999998764
No 121
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.20 E-value=40 Score=27.78 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 147 YMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 147 ~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
.|-++-.+..+---=.+++-+.-+....++-.+..+..++.-+..+||.|+..|+.++..+.++.+..+
T Consensus 9 li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f 77 (140)
T PF00790_consen 9 LIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRF 77 (140)
T ss_dssp HHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 333444443322233556667777777788888889999999999999999999999999988876555
No 122
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.05 E-value=94 Score=32.02 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=70.8
Q ss_pred ChHHHhHHHHHhhCC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHH
Q psy18014 121 EDLYRAAAIRALCSI--TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQY 198 (323)
Q Consensus 121 N~~ir~lALr~L~~i--~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~ 198 (323)
++-.+-+|=..+.+. .-|++.+.-...+..++.|.+.-||+.|+-++..+++.+||.+.+..+-|.++|...++....
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~ 114 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELD 114 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHH
Confidence 344444444444443 268899999999999999999999999999999999999999999999999999998886555
Q ss_pred HHHHHHHHHHhcCh-hhHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy18014 199 HALGLLYHIRKSDQ-LAVTKLVAKLTKFTMKSPYATCMLIRIVC 241 (323)
Q Consensus 199 ~al~ll~~l~~~d~-~~~~~lv~~L~~~~~~~~~~~~~llr~~~ 241 (323)
..-..|..+-+.|+ ..+..++.++....-.++-.-...|++++
T Consensus 115 ~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 115 AVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 54333333333333 33344444443111123334444555543
No 123
>KOG2160|consensus
Probab=76.84 E-value=73 Score=30.66 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=64.4
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHHH-----HHHHHHHHhcCCCh-HHHHHHHHHHHHHHhcChhhHHHH---
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-----WVNEVQEALNSENV-MVQYHALGLLYHIRKSDQLAVTKL--- 218 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-----~~~~l~~~l~d~~~-~V~~~al~ll~~l~~~d~~~~~~l--- 218 (323)
+...+.+.++-||..|+-.+..+.+.+|...+. ++..+-..+...+| .+-..|+.+++-+-++.+......
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 344788999999999999999999999987653 56667777776555 555777776666555544333111
Q ss_pred ------HHHHhhccCCChHHHHHHHHHHHHHhhhhh
Q psy18014 219 ------VAKLTKFTMKSPYATCMLIRIVCKLIEDQN 248 (323)
Q Consensus 219 ------v~~L~~~~~~~~~~~~~llr~~~~~~~~~~ 248 (323)
..-+. .+-.+.-.+.+.+-++..++..++
T Consensus 209 ~G~~~L~~vl~-~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 209 NGYQVLRDVLQ-SNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred CCHHHHHHHHH-cCCcchHHHHHHHHHHHHHHHhhh
Confidence 11111 111345666666666666655544
No 124
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.63 E-value=27 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 162 AAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 162 ~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
.+++.+.-++...++-.+..+..++.-+..+||.|+..|+.++-.+.++.+..+
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f 72 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPF 72 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 345556666666677777888889888999999999999999999888766655
No 125
>KOG2956|consensus
Probab=76.46 E-value=89 Score=31.42 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=90.9
Q ss_pred HHHhhCCCchhhHH----HHHHHHHHhccC-CChHHHHHHHHHHHhhhccChhHHHH----HHHHHHHHhcCCChHHHHH
Q psy18014 129 IRALCSITDTTMIQ----AIERYMKQAIVD-RNSAVSSAAVVSIFHMTKHSPDLVKR----WVNEVQEALNSENVMVQYH 199 (323)
Q Consensus 129 Lr~L~~i~~~~~~~----~l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~p~~v~~----~~~~l~~~l~d~~~~V~~~ 199 (323)
|-.|.+-..-.+++ .+...+.+.|.| .++..|+-|+-.+-+++..-|....+ .+..+-++-.|.++.|+..
T Consensus 311 l~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~ 390 (516)
T KOG2956|consen 311 LPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRV 390 (516)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHH
Confidence 55555656555555 455668888999 77888888888788888887876543 4455566667777777766
Q ss_pred HH-HHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh----cCCCh
Q psy18014 200 AL-GLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL----RHKSE 274 (323)
Q Consensus 200 al-~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~ 274 (323)
|- .++-.+..++|......+..+... .+.=.-+.+|+.+.++..+=+.+ +.-.+++=+.|++ .+.++
T Consensus 391 Aeed~~~~las~~P~~~I~~i~~~Ilt--~D~~~~~~~iKm~Tkl~e~l~~E------eL~~ll~diaP~~iqay~S~SS 462 (516)
T KOG2956|consen 391 AEEDCLTTLASHLPLQCIVNISPLILT--ADEPRAVAVIKMLTKLFERLSAE------ELLNLLPDIAPCVIQAYDSTSS 462 (516)
T ss_pred HHHHHHHHHHhhCchhHHHHHhhHHhc--CcchHHHHHHHHHHHHHhhcCHH------HHHHhhhhhhhHHHHHhcCchH
Confidence 63 445556666666554433332211 12223346666766664432211 1333333333332 57888
Q ss_pred hHHHHHHHHHHccc
Q psy18014 275 TVVYEAAHAIVNLR 288 (323)
Q Consensus 275 aV~~ea~k~i~~l~ 288 (323)
+|.=+||=++..+.
T Consensus 463 ~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 463 TVRKTAVFCLVAMV 476 (516)
T ss_pred HhhhhHHHhHHHHH
Confidence 88888888887763
No 126
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.28 E-value=1e+02 Score=32.19 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=116.8
Q ss_pred CCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc--CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhh
Q psy18014 63 EQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI--AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140 (323)
Q Consensus 63 ~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~--~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~ 140 (323)
+..+--|+.-+-|..+..+.|.|.+++|-.---+..+++. +.+++ + +|.+.+....-..|-.+=-+++-+..--+
T Consensus 721 eyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL-~--~LlnnLkvqeRq~RvctsvaI~iVae~cg 797 (975)
T COG5181 721 EYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVL-D--ILLNNLKVQERQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHH-H--HHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence 3455567777888899999999999999765555555442 33332 2 24455544433333222222222222222
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhhhcc----ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-----
Q psy18014 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH----SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSD----- 211 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~----~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d----- 211 (323)
--.+.+.+..--..++..|..-.+-++..+|+- .-|.+....+-+.+++.|+||.--..|.+++..+.-+.
T Consensus 798 pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 798 PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence 234455555555667788887777777776643 34555567778888899999877777777766665442
Q ss_pred hhhHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHH
Q psy18014 212 QLAVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVV 277 (323)
Q Consensus 212 ~~~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~ 277 (323)
..+...|+..|--+ --++|..+.-+..-+-.+-+ - . ....+++++..-|.|.+..|.
T Consensus 878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~--~-l------g~g~~m~Yv~qGLFHPs~~VR 935 (975)
T COG5181 878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT--V-L------GSGAMMKYVQQGLFHPSSTVR 935 (975)
T ss_pred HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH--H-h------ccHHHHHHHHHhccCchHHHH
Confidence 12233444333110 11345555444443322211 1 1 247889999999999988774
No 127
>KOG1241|consensus
Probab=76.01 E-value=1.1e+02 Score=32.49 Aligned_cols=240 Identities=11% Similarity=0.083 Sum_probs=145.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCchhhh-hhHHHHHHhhcCCCchhHHHHHHHHHHhccc----------------Cc--
Q psy18014 44 NPKKCTHILTKILYLINQGEQLGTQEAT-DAFFAMTKLFQSKDVILRRMVYLGIKELSNI----------------AE-- 104 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~~~~e~s-~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~----------------~~-- 104 (323)
|.+-+..++..+...|++-++|=+--|- .+|.--+..|.|++.+++-.+-=||+++.+. +|
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~ 309 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSS 309 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 5555567888888888877654332333 4666677889999999999999999965211 11
Q ss_pred ---------chH-hhhhhhhh-----hcCCCCh-HHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHH
Q psy18014 105 ---------DVI-IVTSSLTK-----DMTGKED-LYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIF 168 (323)
Q Consensus 105 ---------~~l-L~iNsl~k-----Dl~~~N~-~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~ 168 (323)
.++ ...+.|.| |-.+=|| +--|--|-..+.....+|++.+.+.|++.+..++=-=|-.|+++.+
T Consensus 310 ~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 310 KYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred hHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 222 34677777 2233355 4556667788888899999999999999999999999999999988
Q ss_pred hhhcc-Chh----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh------hHHHHHHHH----hhc---cCCCh
Q psy18014 169 HMTKH-SPD----LVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL------AVTKLVAKL----TKF---TMKSP 230 (323)
Q Consensus 169 kl~~~-~p~----~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~------~~~~lv~~L----~~~---~~~~~ 230 (323)
.+... .|+ ++...++.+-.++.|..-.|--.+---+..+...-+. .....+..+ ... .....
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~C 469 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVC 469 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHH
Confidence 77642 233 2335667777777766544442222223333332221 112222222 211 11234
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCCch-hHHHHHHHHhc---------CCChhHHHHHHHHHHccc
Q psy18014 231 YATCMLIRIVCKLIEDQNAASGDTNWSNS-PLFDYLETCLR---------HKSETVVYEAAHAIVNLR 288 (323)
Q Consensus 231 ~~~~~llr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~---------~~~~aV~~ea~k~i~~l~ 288 (323)
|...-+.+-+-......++. + ... .|-.++..++. ++-.+-.|||...++...
T Consensus 470 WAf~~Laea~~eA~~s~~qt----~-~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQT----D-PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred HHHHHHHHHHHHhccCCCCC----C-ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence 87777766554332222111 1 123 33455555553 223478899988888774
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.83 E-value=23 Score=36.57 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=12.7
Q ss_pred hcCCChhHHHHHHHHHHcc
Q psy18014 269 LRHKSETVVYEAAHAIVNL 287 (323)
Q Consensus 269 L~~~~~aV~~ea~k~i~~l 287 (323)
|.-++.+|...|+|.++.-
T Consensus 280 lDvSr~sv~v~aik~~F~~ 298 (885)
T COG5218 280 LDVSRRSVLVAAIKGVFEK 298 (885)
T ss_pred HhhhhHHHHHHHHHHHHhh
Confidence 3345556888888887654
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.32 E-value=37 Score=28.89 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=32.3
Q ss_pred hhhhcCCCChHHHhHHHHHhhCCCc---hhhH----HHHHHHHHHhccCC-ChHHHHHHHHHHHhhh---ccChhHHHH
Q psy18014 113 LTKDMTGKEDLYRAAAIRALCSITD---TTMI----QAIERYMKQAIVDR-NSAVSSAAVVSIFHMT---KHSPDLVKR 180 (323)
Q Consensus 113 l~kDl~~~N~~ir~lALr~L~~i~~---~~~~----~~l~~~v~~~L~d~-~~yVRk~A~~~~~kl~---~~~p~~v~~ 180 (323)
+.+=++|+++.-|-.+++.+.-+.. ++.. ....+.+.+.|..+ .+.+++.|+.++.+++ ...|++.++
T Consensus 30 i~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 30 INSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3344455555555555444433322 2222 22233333333333 3566777777766666 445666553
No 130
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.03 E-value=47 Score=27.65 Aligned_cols=53 Identities=25% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
.++-+.-++...+.-.++.+..+..-+..+||.|+..|+.+|..+.++.+..+
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~f 76 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHF 76 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 34445555555666667788888888999999999999999998887755444
No 131
>KOG4500|consensus
Probab=75.03 E-value=95 Score=31.09 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=118.2
Q ss_pred hhHHHHHHhhcC-CCchhHHHHHHHHHHhcccCcc-hHh--------hhhhhhh--hcCCCC----hHHHhHHHHHhhCC
Q psy18014 72 DAFFAMTKLFQS-KDVILRRMVYLGIKELSNIAED-VII--------VTSSLTK--DMTGKE----DLYRAAAIRALCSI 135 (323)
Q Consensus 72 ~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~~~-~lL--------~iNsl~k--Dl~~~N----~~ir~lALr~L~~i 135 (323)
.+-|..++++++ .++.+.-|++-.+--.+++... ..+ .+|-++| |.++.. .+=||.-|-.+-..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 445556666655 4555555655444333332211 112 3454544 666664 45577777777777
Q ss_pred CchhhH-----HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH---H-HHHHHHHHHhcC-----CChHHHHHHH
Q psy18014 136 TDTTMI-----QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV---K-RWVNEVQEALNS-----ENVMVQYHAL 201 (323)
Q Consensus 136 ~~~~~~-----~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v---~-~~~~~l~~~l~d-----~~~~V~~~al 201 (323)
++++|- +.+.+.+...+.+.+....-+++++++...+.+.-.+ + ++++.+.+++.. +|--++++++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 777753 3377778888999999999999999999988776543 3 578888777754 4556787777
Q ss_pred HHHHHHHh--cChhhH--H----HHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCC
Q psy18014 202 GLLYHIRK--SDQLAV--T----KLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKS 273 (323)
Q Consensus 202 ~ll~~l~~--~d~~~~--~----~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 273 (323)
+.|..+.. .++..+ . -++.++. ..+|-.+-+++-.++......+.... .=.....+++.+..|-++++
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk---~~~ppv~fkllgTlrM~~d~qe~~a~-eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLK---LASPPVTFKLLGTLRMIRDSQEYIAC-ELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHH---hcCCcchHHHHHHHHHHHhchHHHHH-HHhcCHHHHHHHHHhhhCCc
Confidence 77655432 122111 1 2222222 22332222332222211100110000 00013455666777777777
Q ss_pred hh-HHHHHHHHHHcc
Q psy18014 274 ET-VVYEAAHAIVNL 287 (323)
Q Consensus 274 ~a-V~~ea~k~i~~l 287 (323)
.| |.-|.-|++..+
T Consensus 459 ~aGv~gESnRll~~l 473 (604)
T KOG4500|consen 459 FAGVAGESNRLLLGL 473 (604)
T ss_pred cchhhhhhhHHHHHH
Confidence 76 888888887665
No 132
>KOG1061|consensus
Probab=74.92 E-value=55 Score=34.59 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=88.0
Q ss_pred HHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy18014 123 LYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALG 202 (323)
Q Consensus 123 ~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ 202 (323)
|++-.=|..+..+...+.++.+...+++--.+.++..-++|+-|++++-.+..+- .+.+..+-+++.-+---|+.-++.
T Consensus 330 YvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~v 408 (734)
T KOG1061|consen 330 YVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIV 408 (734)
T ss_pred hhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhH
Confidence 8889999999999999999999999999999999888888899999987766655 555666666666433333444455
Q ss_pred HHHHHHhcChhhHHHHHHHHh--hccCCChHHHHHHHHHHHHHh
Q psy18014 203 LLYHIRKSDQLAVTKLVAKLT--KFTMKSPYATCMLIRIVCKLI 244 (323)
Q Consensus 203 ll~~l~~~d~~~~~~lv~~L~--~~~~~~~~~~~~llr~~~~~~ 244 (323)
++..+-+.-|..+-.++..+. ...|.+|-+...++=+++.+.
T Consensus 409 vi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 409 VIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred HHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhh
Confidence 555554444444455666664 346788888877777777663
No 133
>KOG1517|consensus
Probab=74.34 E-value=30 Score=38.08 Aligned_cols=137 Identities=14% Similarity=0.032 Sum_probs=88.7
Q ss_pred hhhhHHHHHHhhcCCCchhHHHHHHH-HHHhccc-CcchHhhhh-------hhhhhcCCCChHHHhHHHHHhhCCCch-h
Q psy18014 70 ATDAFFAMTKLFQSKDVILRRMVYLG-IKELSNI-AEDVIIVTS-------SLTKDMTGKEDLYRAAAIRALCSITDT-T 139 (323)
Q Consensus 70 ~s~lf~~vvkl~~s~d~~lKkl~Yly-l~~~~~~-~~~~lL~iN-------sl~kDl~~~N~~ir~lALr~L~~i~~~-~ 139 (323)
...||+-|+||+||+-.++|-+.-+- .+.+|-+ +-++=|+=- +++.|-+.-+|.-|++|-=.|+.|..- .
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 44899999999999999999865544 4444433 222222110 112222333567888887777666432 0
Q ss_pred h------HHHHHHHHHHhccC-CChHHHHHHHHHHHhhhccChhHH----H-HHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 140 M------IQAIERYMKQAIVD-RNSAVSSAAVVSIFHMTKHSPDLV----K-RWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 140 ~------~~~l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~p~~v----~-~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
. -..+......-++| +.|..|.-.|+|+.+|+..+++.- + ...+.+...+.|.-|-|-++|+-+|-.
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 0 01222233445666 579999999999999999887642 2 367778889999999999998655543
No 134
>KOG0567|consensus
Probab=74.30 E-value=40 Score=31.32 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=46.7
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
||+|..-+.++..++|--+=-.++.+..|.=++.+.+.+..- .-+|+||=-|+.|++.+-. ++ -++-+++.+
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~--e~----~~~vL~e~~ 260 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD--ED----CVEVLKEYL 260 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC--HH----HHHHHHHHc
Confidence 455555566666667766666666666666555554443331 2346777776666666521 22 234455556
Q ss_pred cCCChHHHHHH
Q psy18014 190 NSENVMVQYHA 200 (323)
Q Consensus 190 ~d~~~~V~~~a 200 (323)
.|..+.|--.+
T Consensus 261 ~D~~~vv~esc 271 (289)
T KOG0567|consen 261 GDEERVVRESC 271 (289)
T ss_pred CCcHHHHHHHH
Confidence 66666654444
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.40 E-value=58 Score=31.71 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=82.5
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccC---------cchHhhhhhhhhhcCCCChHHHhHHHHHh---hCC--CchhhHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIA---------EDVIIVTSSLTKDMTGKEDLYRAAAIRAL---CSI--TDTTMIQ 142 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~---------~~~lL~iNsl~kDl~~~N~~ir~lALr~L---~~i--~~~~~~~ 142 (323)
|...+-+++.+++-.+|=.++.+.... ..-++++=||.+|.. |+.-|--|||.+ ..+ +..++-.
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~~~ 107 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEIPR 107 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccCCH
Confidence 333445555888888888777663321 222456668888865 467777777655 455 5567788
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH--HHHHHHHHhcCCChH
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR--WVNEVQEALNSENVM 195 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~--~~~~l~~~l~d~~~~ 195 (323)
.+.+.|.....+.+.-.|..|+-.+..+.-.+|+++-. -+.-+.+.+.|....
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh
Confidence 88999999999999999999999999999999998742 455555555554433
No 136
>KOG4535|consensus
Probab=73.03 E-value=11 Score=37.80 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCch--hh---------------------
Q psy18014 84 KDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT--TM--------------------- 140 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~--~~--------------------- 140 (323)
.+---||..|=||..+-++.|+.= .-.-+.=-++|+||--|++||..++.|..- .+
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g-~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~ 102 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELG-SPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIAC 102 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCC-CceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHH
Confidence 455669999999999866543310 000112247899999999999988776421 11
Q ss_pred -HHHHHHHHHHhccC-CChHHHHHHHHHHHhhhccCh------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 141 -IQAIERYMKQAIVD-RNSAVSSAAVVSIFHMTKHSP------DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 141 -~~~l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~p------~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
+..+.+.+.-.|.- .+|-|---.+-|+..+....| ..+.++.+.++..+..+|+.|..+++.++..+..
T Consensus 103 si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 103 SIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 12222333333322 334444444666667766665 3455788999999999999999999888776653
No 137
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=73.00 E-value=86 Score=29.64 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHcCC--CCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHh----c--ccCcchH-hhhhhhhh
Q psy18014 45 PKKCTHILTKILYLINQGE--QLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKEL----S--NIAEDVI-IVTSSLTK 115 (323)
Q Consensus 45 ~~k~~~~l~kli~~~~~G~--~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~----~--~~~~~~l-L~iNsl~k 115 (323)
.+.+..+|..++..+..-. +|-+--...+.-.+.+.+....-....+.+-.+..+ + ...++++ -+.+.|.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 4444478888888776543 222222335666777777665545555554433333 3 2334443 23344444
Q ss_pred hcCCC--ChHHHhHHHHHhh-----CCCchhhHHHHHHHHH---H-h----------cc-CCChHHHHHHHHHHHhhhcc
Q psy18014 116 DMTGK--EDLYRAAAIRALC-----SITDTTMIQAIERYMK---Q-A----------IV-DRNSAVSSAAVVSIFHMTKH 173 (323)
Q Consensus 116 Dl~~~--N~~ir~lALr~L~-----~i~~~~~~~~l~~~v~---~-~----------L~-d~~~yVRk~A~~~~~kl~~~ 173 (323)
=++|. ++.+|..++++|+ .=..++-+..+...+. . . .. ..++-|.-+|+.|..-|.-.
T Consensus 137 ~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~ 216 (309)
T PF05004_consen 137 ILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTT 216 (309)
T ss_pred HHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhc
Confidence 44333 4556544443332 2223333331112222 0 0 01 12367888888888877754
Q ss_pred Chh-----HHHHHHHHHHHHhcCCChHHHHHH---HHHHHHHHhc
Q psy18014 174 SPD-----LVKRWVNEVQEALNSENVMVQYHA---LGLLYHIRKS 210 (323)
Q Consensus 174 ~p~-----~v~~~~~~l~~~l~d~~~~V~~~a---l~ll~~l~~~ 210 (323)
-|+ ..+..++.+.++|...|..|..+| ++++||+...
T Consensus 217 ~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 217 LPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 444 334578889999999999998877 8999999764
No 138
>KOG0168|consensus
Probab=72.78 E-value=63 Score=34.86 Aligned_cols=172 Identities=12% Similarity=0.144 Sum_probs=107.5
Q ss_pred hhhhhhhhcCCC-ChHHHhHHHHHhhCCC---chh-----hHHHHHHHHHHhccCCC-hHHHHHHHHHHHhhhccChhHH
Q psy18014 109 VTSSLTKDMTGK-EDLYRAAAIRALCSIT---DTT-----MIQAIERYMKQAIVDRN-SAVSSAAVVSIFHMTKHSPDLV 178 (323)
Q Consensus 109 ~iNsl~kDl~~~-N~~ir~lALr~L~~i~---~~~-----~~~~l~~~v~~~L~d~~-~yVRk~A~~~~~kl~~~~p~~v 178 (323)
=.+.|...++.. .|..+--||.-||.+. +++ +++.+++.+...|.|.+ +.+--.||-|+.+++...|.-+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345666677655 8888888888888543 333 36888899999999954 8999999999999998887543
Q ss_pred H-----HHHHHHHHHh-cCCChHHHHHHHHHHHHHHhcChhhH------HHHHHHHhhccCCChHHHHHHHHHHHHHhhh
Q psy18014 179 K-----RWVNEVQEAL-NSENVMVQYHALGLLYHIRKSDQLAV------TKLVAKLTKFTMKSPYATCMLIRIVCKLIED 246 (323)
Q Consensus 179 ~-----~~~~~l~~~l-~d~~~~V~~~al~ll~~l~~~d~~~~------~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~ 246 (323)
. ..++-+.+-| .=.--.|.-.++..+..|.+..+.++ .-.+..| .+.+.-+|-.-|-++...-..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl---DFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL---DFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 2 1333332222 22222455566777777776666554 2222223 244666777777776543111
Q ss_pred -hhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcc
Q psy18014 247 -QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL 287 (323)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l 287 (323)
.|++ -+..-.-+.+|.++|++.+.-++-.++-+++++
T Consensus 325 i~sd~----f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 325 IRSDE----FHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred CCCcc----chHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 2211 012333356888899988877766666666665
No 139
>KOG1949|consensus
Probab=72.52 E-value=31 Score=36.32 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=70.8
Q ss_pred CcchH--hhhhhhhhhcCCCChHHHhHHHHHhhC---CCchhh--------HHHHHHHHHHhccCCChHHHHHHHHHHHh
Q psy18014 103 AEDVI--IVTSSLTKDMTGKEDLYRAAAIRALCS---ITDTTM--------IQAIERYMKQAIVDRNSAVSSAAVVSIFH 169 (323)
Q Consensus 103 ~~~~l--L~iNsl~kDl~~~N~~ir~lALr~L~~---i~~~~~--------~~~l~~~v~~~L~d~~~yVRk~A~~~~~k 169 (323)
-|+++ |.--.|=+-++-+|..+|.+|+..+.. +++|+. ++-=..++-+.|.|.=|.||+.|+.++.|
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 35543 666678899999999999999988765 344433 55666788899999999999999999998
Q ss_pred hhccChh-----HHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q psy18014 170 MTKHSPD-----LVKRWVNEVQEALN-SENVMVQYHALGLLYHI 207 (323)
Q Consensus 170 l~~~~p~-----~v~~~~~~l~~~l~-d~~~~V~~~al~ll~~l 207 (323)
++...-+ ++.+++..+.+-+. |....|-.+.+.-+.++
T Consensus 247 ~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~ 290 (1005)
T KOG1949|consen 247 ITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMI 290 (1005)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHH
Confidence 7754433 44455555544332 33334444443333333
No 140
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.40 E-value=70 Score=29.42 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=72.0
Q ss_pred ChhHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhc-----cCCChHHHHHHHHHHHHHhh
Q psy18014 174 SPDLVK---RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKF-----TMKSPYATCMLIRIVCKLIE 245 (323)
Q Consensus 174 ~p~~v~---~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~-----~~~~~~~~~~llr~~~~~~~ 245 (323)
.|++.+ +..+...+.+.+.+.....+|+-+|.+.+.. .++..+++.+... ...+-|.--.+-+++..+..
T Consensus 33 ~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~--~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~ 110 (249)
T PF06685_consen 33 TPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE--RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD 110 (249)
T ss_pred hHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh--hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC
Confidence 465543 4555566777777777677888888888654 4555555555321 11223444444455443322
Q ss_pred hhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcC
Q psy18014 246 DQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSS 308 (323)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s 308 (323)
. ..+.+.+++.+ .+.+.-|...|++++..+...++..+..++..++.++..
T Consensus 111 G----------~~~~L~~li~~--~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 111 G----------DIEPLKELIED--PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred C----------CHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1 24555555554 345678888999998888755555666666666666653
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=72.24 E-value=95 Score=29.82 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHcc---cCCCHHh-------HhhHHHHHHHHhcCC
Q psy18014 259 SPLFDYLETCLRHKSETVVYEAAHAIVNL---RRTSARE-------LAPAVSVLQLFCSSP 309 (323)
Q Consensus 259 ~~~~~~l~~~L~~~~~aV~~ea~k~i~~l---~~~~~~~-------~~~~~~~l~~~L~s~ 309 (323)
...+.++-..|++.+..|.+||..++=-+ ++.++.+ +...+..+..|....
T Consensus 253 ~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 253 PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44556677778899999999998776433 4544433 245555555555544
No 142
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=71.60 E-value=45 Score=27.45 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=43.7
Q ss_pred cchHhhhhhhhhhcCCCChHHHhHHHHHhhCC------------CchhhHHHHHHHHHHhccCCChHHHHHHHHHH---H
Q psy18014 104 EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI------------TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSI---F 168 (323)
Q Consensus 104 ~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i------------~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~---~ 168 (323)
+.+--++..|+|-++|+||.+.-.||..|-.+ ...++.+.+.+-+...-.+..+.||+++.-.+ .
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34677899999999999999999998776433 23333333333333322221122888865432 2
Q ss_pred hhhccChhH
Q psy18014 169 HMTKHSPDL 177 (323)
Q Consensus 169 kl~~~~p~~ 177 (323)
.-|+.+|+.
T Consensus 118 ~~f~~~~~~ 126 (140)
T PF00790_consen 118 EAFKSDPEL 126 (140)
T ss_dssp HHTTTSTTG
T ss_pred HHHCCCCCc
Confidence 344555654
No 143
>KOG1517|consensus
Probab=71.18 E-value=28 Score=38.22 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=97.8
Q ss_pred hhHHHHHHHH------HHccC-CCCChHHHHHHHHHHHHHHHcCCCCCchhhhh--hHHHHHHhhcC-CCchhHHHHHHH
Q psy18014 26 LDKTAVLQEA------RTFND-TPVNPKKCTHILTKILYLINQGEQLGTQEATD--AFFAMTKLFQS-KDVILRRMVYLG 95 (323)
Q Consensus 26 ~ek~~i~qe~------~~f~~-~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~--lf~~vvkl~~s-~d~~lKkl~Yly 95 (323)
+.-.+.++|. +.+.. ..++.+++ ..-.=|++.+..|...||..+.. +...-+..+.+ +..-+|..+.+.
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqr-tmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQR-TMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHH-HHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4445666662 33333 23443442 44445788888888888877662 22222334455 368899999999
Q ss_pred HHHhcccCcch-Hhhh-----hhhhhhcCCCChHHHhHHHHHhhCCCch----------------------hhHHHHHH-
Q psy18014 96 IKELSNIAEDV-IIVT-----SSLTKDMTGKEDLYRAAAIRALCSITDT----------------------TMIQAIER- 146 (323)
Q Consensus 96 l~~~~~~~~~~-lL~i-----Nsl~kDl~~~N~~ir~lALr~L~~i~~~----------------------~~~~~l~~- 146 (323)
+..+..+-+++ ...+ --|-.-+.|+-|.||+.|+-+|+.+..- .-+|....
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~ 703 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIK 703 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHh
Confidence 99887766664 3333 3456678899999999999888776552 11334443
Q ss_pred ---HHHHhccCCChHHHHHHHHHHHhhhccCh
Q psy18014 147 ---YMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 147 ---~v~~~L~d~~~yVRk~A~~~~~kl~~~~p 175 (323)
.+...+.|.+|.||+.-+.++.+....+.
T Consensus 704 ~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 704 GLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 67788899999999998888887655443
No 144
>KOG1992|consensus
Probab=71.09 E-value=1.6e+02 Score=31.85 Aligned_cols=133 Identities=13% Similarity=0.170 Sum_probs=81.4
Q ss_pred HHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHH-hhc------CCCchhHHHHHHHHHHhccc-----
Q psy18014 35 ARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTK-LFQ------SKDVILRRMVYLGIKELSNI----- 102 (323)
Q Consensus 35 ~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvk-l~~------s~d~~lKkl~Ylyl~~~~~~----- 102 (323)
+|...++++|+|++ . ..-++.... +.| +..++.+|..-++ +++ |.|-.-|-..|.....++-.
T Consensus 367 RRDlEGsDvdTRRR-~-a~dlvrgL~--~~f-e~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 367 RRDLEGSDVDTRRR-A-AIDLVRGLC--KNF-EGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHhcccCCcchhHH-H-HHHHHHHHH--HHh-cchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 46777788887652 2 222222222 334 3346777776444 344 33333333322223333210
Q ss_pred -----C----cchHhhhhhhhhhcCCC----ChHHHhHHHHHhhCCC---chhhHHHHHHHHHHhccCCChHHHHHHHHH
Q psy18014 103 -----A----EDVIIVTSSLTKDMTGK----EDLYRAAAIRALCSIT---DTTMIQAIERYMKQAIVDRNSAVSSAAVVS 166 (323)
Q Consensus 103 -----~----~~~lL~iNsl~kDl~~~----N~~ir~lALr~L~~i~---~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~ 166 (323)
. +..=-.+|.+.-||++| +|++++-|++.+.-.| .++..=.+.+.+.+.|...++-|-+-|+.|
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 1 11123467788899885 5899999999876544 566777777888889999999999999999
Q ss_pred HHhhhc
Q psy18014 167 IFHMTK 172 (323)
Q Consensus 167 ~~kl~~ 172 (323)
+=|+.-
T Consensus 522 iEkil~ 527 (960)
T KOG1992|consen 522 IEKLLT 527 (960)
T ss_pred HHhccc
Confidence 888763
No 145
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.01 E-value=8.6 Score=24.38 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhh
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMT 171 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~ 171 (323)
..+.+.+.|.+.++.|++.|+-|+..|.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677888888999999999998887663
No 146
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.46 E-value=13 Score=30.18 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHhhhccChh---HHHH--HHHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 155 RNSAVSSAAVVSIFHMTKHSPD---LVKR--WVNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 155 ~~~yVRk~A~~~~~kl~~~~p~---~v~~--~~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
.+|-+.--||.=++.+.+.+|+ ++++ ....+.+++.+.|+.|.++|+-.+-
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3566666666667777777775 3443 5667889999999999999975543
No 147
>KOG1992|consensus
Probab=69.78 E-value=51 Score=35.35 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHhcC----CChhHHHHHHHHHHcccC-CCHHhHhhHHHHHHHHhcCCCh-hhHHHHHh
Q psy18014 263 DYLETCLRH----KSETVVYEAAHAIVNLRR-TSARELAPAVSVLQLFCSSPKP-VLRFAAVR 319 (323)
Q Consensus 263 ~~l~~~L~~----~~~aV~~ea~k~i~~l~~-~~~~~~~~~~~~l~~~L~s~~~-niry~aL~ 319 (323)
+.+.+-|.+ ..+.+..+++|-++...+ .+++........+.+||+++.+ .-.|+|..
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 444444443 456778888888877754 2456778888888889988444 44677754
No 148
>KOG2005|consensus
Probab=69.60 E-value=32 Score=35.98 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=73.1
Q ss_pred ChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHH
Q psy18014 121 EDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200 (323)
Q Consensus 121 N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~a 200 (323)
-+-+-|.||=+|+-=...+|+ .+.+-+.+.-.+|.+||+.-+|+.-++..+|.+ +.++.+...+.|.|+-|.++|
T Consensus 621 ~~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~na 695 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNA 695 (878)
T ss_pred cchhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHH
Confidence 367788899888876666665 455667777899999999999999999999975 368888899999999999999
Q ss_pred HHHHHHHHhc-ChhhHHHHHHHHh
Q psy18014 201 LGLLYHIRKS-DQLAVTKLVAKLT 223 (323)
Q Consensus 201 l~ll~~l~~~-d~~~~~~lv~~L~ 223 (323)
+-.+-.+--. +..-+.+++++|.
T Consensus 696 IfamGLiGAGTnNARla~mLrqla 719 (878)
T KOG2005|consen 696 IFAMGLIGAGTNNARLAQMLRQLA 719 (878)
T ss_pred HHHhccccCCcchHHHHHHHHHHH
Confidence 8666555321 1122345555554
No 149
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=69.33 E-value=51 Score=25.55 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhccC----hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 159 VSSAAVVSIFHMTKHS----PDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 159 VRk~A~~~~~kl~~~~----p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
-||.+++|+..+.-.- .+..+.+++-+-.++.|.|+-|-|.|.-.++.+.+.-+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3788888877664333 34445677778889999999999999988888876543
No 150
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.60 E-value=15 Score=29.90 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=40.0
Q ss_pred chhHHHHHHHHhcCCCh-hHHHHHHHHH---HcccCCCHHhH--hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 258 NSPLFDYLETCLRHKSE-TVVYEAAHAI---VNLRRTSAREL--APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 258 ~~~~~~~l~~~L~~~~~-aV~~ea~k~i---~~l~~~~~~~~--~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
...++..|..+|..+++ .++-=|+.=| +...+....++ -.+...+-.+++++|+++||-||.++.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 57777888888854433 3332233333 22222223333 567888899999999999999998764
No 151
>KOG0915|consensus
Probab=67.52 E-value=1.3e+02 Score=34.56 Aligned_cols=183 Identities=18% Similarity=0.214 Sum_probs=111.3
Q ss_pred hhhhhhhhcCCCChHHHhH------HHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh-HHHHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAA------AIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD-LVKRW 181 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~l------ALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~-~v~~~ 181 (323)
.|.-|-+-=-||++-|++. ||-+=++-...+....+.+.+..++.++.--||-++|+|+..|.+..|- .+.+-
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3444444556899988862 3333334445567788899999999999999999999999999987652 22222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhH
Q psy18014 182 VNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPL 261 (323)
Q Consensus 182 ~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
+++ .-..++.++-+|++.-+.+..+....+.+ .++|+. .. .++. ....+
T Consensus 1079 lpe-----------lw~~~fRvmDDIKEsVR~aa~~~~~~lsK----------l~vr~~-d~--~~~~-------~~~~~ 1127 (1702)
T KOG0915|consen 1079 LPE-----------LWEAAFRVMDDIKESVREAADKAARALSK----------LCVRIC-DV--TNGA-------KGKEA 1127 (1702)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhc-cc--CCcc-------cHHHH
Confidence 222 23344556666666655555555544432 122221 11 1121 24666
Q ss_pred HHHHHHHhc-----CCChhHHHHHHHHHHcccCCCHHh----HhhHHHHHHHHhcC-CChhhHHHHHhhhc
Q psy18014 262 FDYLETCLR-----HKSETVVYEAAHAIVNLRRTSARE----LAPAVSVLQLFCSS-PKPVLRFAAVRTLN 322 (323)
Q Consensus 262 ~~~l~~~L~-----~~~~aV~~ea~k~i~~l~~~~~~~----~~~~~~~l~~~L~s-~~~niry~aL~~l~ 322 (323)
++.+-|+|- |.-++|.--|+++++.+...+... +...+..+....+. .+..+-|+++|..+
T Consensus 1128 l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~ 1198 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLIN 1198 (1702)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhh
Confidence 677777653 445678888888888886433322 24445555555554 55678889888743
No 152
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.40 E-value=30 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHH
Q psy18014 128 AIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWV 182 (323)
Q Consensus 128 ALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~ 182 (323)
-|-.++.- +++-+..+..++-+-|.|++|+|+-+|+-.+-++++..++....|+
T Consensus 24 Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~ 77 (122)
T cd03572 24 EIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKREL 77 (122)
T ss_pred HHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHH
Confidence 33344433 5566778888888888888899988888888888877766554443
No 153
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.15 E-value=39 Score=27.20 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 157 SAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
++||++.+.++..+...+ |+--.++++.+.+.+.. ++.-....+.+|.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~ 50 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILR 50 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 689999999988877443 55444555666555555 3443433444433
No 154
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.10 E-value=78 Score=30.78 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=72.5
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHh-hhccChhHHHH-HHHHHHHHhc------CCChHHHHHHHHHHHHHHhcC-----
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFH-MTKHSPDLVKR-WVNEVQEALN------SENVMVQYHALGLLYHIRKSD----- 211 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~k-l~~~~p~~v~~-~~~~l~~~l~------d~~~~V~~~al~ll~~l~~~d----- 211 (323)
.++|++-+.-.+.+-|+.|+.-+++ +.+..++.+.. +...++.++. ..|.----.|+.++.-+....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 3567777766666667777777664 55555555443 4455666555 234444445555555554322
Q ss_pred h-------hhH-----HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHH
Q psy18014 212 Q-------LAV-----TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYE 279 (323)
Q Consensus 212 ~-------~~~-----~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~e 279 (323)
+ ..+ ..+++.|....-..||.+.--++++..+-..-|.+ ....++..+..+|++++..|---
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~------~l~~~~~~l~~~L~~~~~vv~ty 365 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKE------QLLQIFPLLVNHLQSSSYVVHTY 365 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HH------HHHHHHHHHHHHTTSS-HHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHhCCCCcchhhh
Confidence 1 111 22223333122346899999999998663221211 25667788888899888887766
Q ss_pred HHHHH
Q psy18014 280 AAHAI 284 (323)
Q Consensus 280 a~k~i 284 (323)
|+.+|
T Consensus 366 AA~~i 370 (370)
T PF08506_consen 366 AAIAI 370 (370)
T ss_dssp HHHHH
T ss_pred hhhhC
Confidence 66654
No 155
>KOG1241|consensus
Probab=65.60 E-value=82 Score=33.50 Aligned_cols=123 Identities=13% Similarity=0.201 Sum_probs=78.5
Q ss_pred hcCCCchhHHHHHHHHHHhcccCcch-HhhhhhhhhhcCCCChHHHhHHHHHhhCCCchh----hHHHHHHHHHHhccCC
Q psy18014 81 FQSKDVILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITDTT----MIQAIERYMKQAIVDR 155 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~~~~~~-lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~----~~~~l~~~v~~~L~d~ 155 (323)
+.++|...|+-.---|..+ +.++ --+=|-+.+-|.+|-|..+..|=.+++.|..-| .++.+...++.+..+.
T Consensus 65 L~akd~~~k~~~~qRWl~l---~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~ 141 (859)
T KOG1241|consen 65 LTAKDPERKQQYQQRWLQL---PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEE 141 (859)
T ss_pred hccCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccc
Confidence 4566665554322224433 3333 345566677788888888887777777765444 4778888888888887
Q ss_pred ChH-HHHHHHHHHHhhhc-cChhHHHHHHHHH-----HHHhcC-CChHHHHHHHHHHHH
Q psy18014 156 NSA-VSSAAVVSIFHMTK-HSPDLVKRWVNEV-----QEALNS-ENVMVQYHALGLLYH 206 (323)
Q Consensus 156 ~~y-VRk~A~~~~~kl~~-~~p~~v~~~~~~l-----~~~l~d-~~~~V~~~al~ll~~ 206 (323)
.|. |+..++-+++-+++ .+|+.+..-.+.+ +.+... .+..|-.+|+..|+.
T Consensus 142 ~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~n 200 (859)
T KOG1241|consen 142 QASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYN 200 (859)
T ss_pred cchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHH
Confidence 766 99999999999885 4588665433332 222221 245788888777654
No 156
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=65.52 E-value=1.4e+02 Score=29.23 Aligned_cols=144 Identities=18% Similarity=0.253 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhc----------CCC---chhHHHHHHHHHHhcccCcc-----hHh
Q psy18014 47 KCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ----------SKD---VILRRMVYLGIKELSNIAED-----VII 108 (323)
Q Consensus 47 k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~----------s~d---~~lKkl~Ylyl~~~~~~~~~-----~lL 108 (323)
..-+.+-+++..+..--+.. ....+.-.+..+|- ... ...+++++++...++..+.+ ..-
T Consensus 112 ~~L~~~~~l~~~iv~~l~~~--~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ 189 (415)
T PF12460_consen 112 RVLELLSRLINLIVRSLSPE--KQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEE 189 (415)
T ss_pred HHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHH
Confidence 44466777777776543322 22233333444443 111 26778888887777544322 222
Q ss_pred hhhhhhhhc-CCCChHHHhHHHHHhhCCCch----hhHHHHHHHHHHhc-cCCChHHHHHHHHHHH-----hhhccChhH
Q psy18014 109 VTSSLTKDM-TGKEDLYRAAAIRALCSITDT----TMIQAIERYMKQAI-VDRNSAVSSAAVVSIF-----HMTKHSPDL 177 (323)
Q Consensus 109 ~iNsl~kDl-~~~N~~ir~lALr~L~~i~~~----~~~~~l~~~v~~~L-~d~~~yVRk~A~~~~~-----kl~~~~p~~ 177 (323)
..+.+.+.. ++.++..|..+++.+|.+..+ +..+.+...+...+ ....+--|..++-... -+.+.+|.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~- 268 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL- 268 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-
Confidence 344444443 444589999999988887766 22344444444444 3344555555554432 24455554
Q ss_pred HHHHHHHHHHHhcCCC
Q psy18014 178 VKRWVNEVQEALNSEN 193 (323)
Q Consensus 178 v~~~~~~l~~~l~d~~ 193 (323)
..+|.+.+-+++.+.+
T Consensus 269 ~~~~~~~L~~lL~~~~ 284 (415)
T PF12460_consen 269 ATELLDKLLELLSSPE 284 (415)
T ss_pred HHHHHHHHHHHhCChh
Confidence 4467777777777743
No 157
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.20 E-value=14 Score=21.37 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHhHHHHHhhCCCchhhHHHHHHHHH
Q psy18014 124 YRAAAIRALCSITDTTMIQAIERYMK 149 (323)
Q Consensus 124 ir~lALr~L~~i~~~~~~~~l~~~v~ 149 (323)
||.-|.++|+.++.++-++.+.+.++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 57788888888888877777766553
No 158
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.16 E-value=1.2e+02 Score=27.96 Aligned_cols=204 Identities=15% Similarity=0.226 Sum_probs=94.9
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCC--------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhh---ccChhHHHH
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSIT--------DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMT---KHSPDLVKR 180 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~--------~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~---~~~p~~v~~ 180 (323)
.|..-++|+++.+|+-|++.|+.+. .++=++.+......-|.|.. .-..|+-|+..|. ...++.+.+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~--~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA--CVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHhCcCCChhhHHH
Confidence 4556678999999999998888542 23345677777777775433 3333455555544 333555555
Q ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHHHHhcChhhH----HHHHHHHh--hccCCChHHHHHHHHHHHHHhhhhhcccC
Q psy18014 181 WVNEVQEALNSEN--VMVQYHALGLLYHIRKSDQLAV----TKLVAKLT--KFTMKSPYATCMLIRIVCKLIEDQNAASG 252 (323)
Q Consensus 181 ~~~~l~~~l~d~~--~~V~~~al~ll~~l~~~d~~~~----~~lv~~L~--~~~~~~~~~~~~llr~~~~~~~~~~~~~~ 252 (323)
++..+-+-..... ..+-+....++..+-.+....+ ...+..+. ..+-++|-....+.++...+...-+-.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~-- 158 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS-- 158 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc--
Confidence 5555543222211 1223333333333222221111 11222211 234567744444444443322111101
Q ss_pred CCCCCchhHHHHHHHHh----c-CCCh--hHHHHHHHHHHccc-CCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 253 DTNWSNSPLFDYLETCL----R-HKSE--TVVYEAAHAIVNLR-RTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 253 ~~~~~~~~~~~~l~~~L----~-~~~~--aV~~ea~k~i~~l~-~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
...+.+.+.+..+- + ..|+ .|.-|-.+.-+.-. ..++..-..+...+.-=|.|+.+++|-=+|++|.
T Consensus 159 ---~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 159 ---EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLK 233 (262)
T ss_pred ---hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 13555555555432 1 1121 23333333222211 1122333456666666666777777777766653
No 159
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=61.43 E-value=94 Score=25.80 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=43.1
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHH
Q psy18014 162 AAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVT 216 (323)
Q Consensus 162 ~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~ 216 (323)
.+++-+.-++...|+-.+..+..+..-+..+||.|+..|+.+|..+.++.+..+.
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh 74 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFH 74 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3455556566667777777888899999999999999999999998887766553
No 160
>KOG2973|consensus
Probab=61.32 E-value=61 Score=30.87 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=53.4
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCCchh------hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH----HH
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSITDTT------MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK----RW 181 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~~~~------~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~----~~ 181 (323)
.+-.=+.++||-+|..|.+.+..+.... --+...+.+.+.+.+..| -.-|+.++.++.+ ++++-+ .|
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQDL 83 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4455678899999999998888877661 135667788899999888 6667788888876 332222 34
Q ss_pred HHHHHHHhcCC
Q psy18014 182 VNEVQEALNSE 192 (323)
Q Consensus 182 ~~~l~~~l~d~ 192 (323)
+..+.+++.|.
T Consensus 84 ~k~l~~~~~~p 94 (353)
T KOG2973|consen 84 LKVLMDMLTDP 94 (353)
T ss_pred HHHHHHHhcCc
Confidence 44455555544
No 161
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=61.23 E-value=21 Score=31.73 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=75.5
Q ss_pred HhhcCCCchhHHHHHHHHHHhcc-cCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCC--CchhhHHHHHHHHHHhccCC
Q psy18014 79 KLFQSKDVILRRMVYLGIKELSN-IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI--TDTTMIQAIERYMKQAIVDR 155 (323)
Q Consensus 79 kl~~s~d~~lKkl~Ylyl~~~~~-~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i--~~~~~~~~l~~~v~~~L~d~ 155 (323)
.+++++-++.+-++-.++....+ ..++.+-.+-.+..+. +.=..+=++|-+.++.+ ..++. .+.+.+-..|.
T Consensus 53 ~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~ 127 (208)
T cd07064 53 ELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDE 127 (208)
T ss_pred HHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCC
Confidence 45677767777666665555432 2222222222233332 22234444555544332 23332 45677788889
Q ss_pred ChHHHHHHHHHHHhhhcc-ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy18014 156 NSAVSSAAVVSIFHMTKH-SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKL 222 (323)
Q Consensus 156 ~~yVRk~A~~~~~kl~~~-~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L 222 (323)
+.++|+.|+++-.+..+. +++.+ ..-+...+.|.+-.|.=+.==+|-++.+.|+......+..-
T Consensus 128 ~~W~rR~ai~~~l~~~~~~~~~~l---~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 128 NFWLRRTAILHQLKYKEKTDTDLL---FEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred cHHHHHHHHHHHHHHHHccCHHHH---HHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 999999999886664432 34333 33344556666555554433357788888887776666544
No 162
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.62 E-value=60 Score=28.17 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 138 TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 138 ~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
..+++-..+.|.+...++++.||..|+-.+.-+.+..=--...-++.+-.+..|.|+.+..-|..++.++.+.
T Consensus 3 s~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 3 SALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3577888899999999999999999988777666533222235678888888999999988888888777543
No 163
>KOG1293|consensus
Probab=59.50 E-value=2.3e+02 Score=29.68 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=92.6
Q ss_pred hcCCCchhHHHHHHHHHHhcc---------c-CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCch-------hhHHH
Q psy18014 81 FQSKDVILRRMVYLGIKELSN---------I-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT-------TMIQA 143 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~---------~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~-------~~~~~ 143 (323)
-..+|+...+-+.+.+.+++. . .+.+-..+.-+ .+|.-.|.|.+|-++|++.-+ =+...
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n 461 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN 461 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC
Confidence 356777888877777776631 1 12233344333 788999999999999998532 22344
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----H-HHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----R-WVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~-~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
...-+.+.+.++++.+|++++-++.++.-...+..+ + ..+.+-+..+|.++.|+..+++++--+-.+...++
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 566777888999999999999999998755544332 2 35567778899999999999999877765544443
No 164
>KOG1822|consensus
Probab=59.50 E-value=2.2e+02 Score=33.60 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=108.3
Q ss_pred hhhhhhhhhcCCCChHHHhHHHHHhhCCC----chhhHHHHHHHHHHhccC-CChHHHHHHHHHHHhhhccChhHHH---
Q psy18014 108 IVTSSLTKDMTGKEDLYRAAAIRALCSIT----DTTMIQAIERYMKQAIVD-RNSAVSSAAVVSIFHMTKHSPDLVK--- 179 (323)
Q Consensus 108 L~iNsl~kDl~~~N~~ir~lALr~L~~i~----~~~~~~~l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~p~~v~--- 179 (323)
+..=-+.+++..+||..|+.|-.+++.+. .+.++-.+.+..-..+.+ ++|+-|---.++++.+++....++.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 44456778889999999988766665542 333333444444444444 5566666666666666665444332
Q ss_pred --HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhcChhhHHHHHHHH-h---hccCCChHHHH-----------------H
Q psy18014 180 --RWVNEVQEALNSEN-VMVQYHALGLLYHIRKSDQLAVTKLVAKL-T---KFTMKSPYATC-----------------M 235 (323)
Q Consensus 180 --~~~~~l~~~l~d~~-~~V~~~al~ll~~l~~~d~~~~~~lv~~L-~---~~~~~~~~~~~-----------------~ 235 (323)
.-..-+.++-.|.+ |.|+..++-.+..+-...+..+..++... . +.....|...+ .
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~a 1035 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDA 1035 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHH
Confidence 22334555556765 48999998877777665544443333321 1 11122222222 2
Q ss_pred HHHHHHHHhhhhhcccCCCCCCchhHHHHHHH---HhcCCChhHHHHHHHHHHcccCCCHH--hHhhHHHHHHHHhcCCC
Q psy18014 236 LIRIVCKLIEDQNAASGDTNWSNSPLFDYLET---CLRHKSETVVYEAAHAIVNLRRTSAR--ELAPAVSVLQLFCSSPK 310 (323)
Q Consensus 236 llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~L~~~~~aV~~ea~k~i~~l~~~~~~--~~~~~~~~l~~~L~s~~ 310 (323)
+++.+..-+..++ +.|.......-.+.. .+.|+++-|.-++++++.++..-.+. -.+..+..+..+|+++=
T Consensus 1036 littlgpeL~~N~----~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~ 1111 (2067)
T KOG1822|consen 1036 LITTLGPELGPNG----DKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSY 1111 (2067)
T ss_pred HHHhcccccCCCC----cccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchh
Confidence 3333321111111 111111111122222 24567888999999998877422222 23555666666666553
Q ss_pred hhh---HHHHHhhh
Q psy18014 311 PVL---RFAAVRTL 321 (323)
Q Consensus 311 ~ni---ry~aL~~l 321 (323)
-.+ .|..||.+
T Consensus 1112 ~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1112 LILRRASFSCLRQL 1125 (2067)
T ss_pred hhhhhhHHhhhhHH
Confidence 322 35555543
No 165
>KOG2025|consensus
Probab=58.98 E-value=2.5e+02 Score=29.94 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=60.9
Q ss_pred hcCCCchhHHHHHHHHHHhcc-cCcchHhhhhhhhhhc-CCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChH
Q psy18014 81 FQSKDVILRRMVYLGIKELSN-IAEDVIIVTSSLTKDM-TGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSA 158 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~-~~~~~lL~iNsl~kDl-~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~y 158 (323)
+--..+.++.=.-++++.|-+ ..++=.-++|++.-=+ +|||+-||..||-.++.=. ...++|..--.|-+..
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------sTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDN------STLPCIVERARDVSGA 208 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCc------ccchhHHHHhhhhhHH
Confidence 444667778878888888853 4456666777665444 7899999999997665321 1233344444455555
Q ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHH
Q psy18014 159 VSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMV 196 (323)
Q Consensus 159 VRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V 196 (323)
+||-+.--++.=.+.-..-+++...-+..-++|++-.|
T Consensus 209 nRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sV 246 (892)
T KOG2025|consen 209 NRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSV 246 (892)
T ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHH
Confidence 55554444332222222222333444444444444433
No 166
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=57.22 E-value=1.1e+02 Score=25.06 Aligned_cols=53 Identities=26% Similarity=0.241 Sum_probs=41.7
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
.++.+.-++...++-.+..+..+..-+..+||.|+..|+.++..+.++.+..+
T Consensus 20 ~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f 72 (133)
T smart00288 20 LILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKF 72 (133)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 34555666666677777888889999999999999999999998887765544
No 167
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.50 E-value=2.4e+02 Score=28.83 Aligned_cols=238 Identities=12% Similarity=0.161 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchh------------HHHHHHHHHHhcc-cCcchH-hh
Q psy18014 44 NPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVIL------------RRMVYLGIKELSN-IAEDVI-IV 109 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~l------------Kkl~Ylyl~~~~~-~~~~~l-L~ 109 (323)
...+.++.++++....... +.+ +....|..+++++..-+.+. .+.--+|+-.++- ..+.++ .+
T Consensus 286 ~~~~~~~~l~~L~~~~~~~--~~~-~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i 362 (574)
T smart00638 286 NEVQIVEVLKHLVQDIASD--VQE-PAAAKFLRLVRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFI 362 (574)
T ss_pred chhhHHHHHHHHHHHHHHH--hcc-chHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4445556777766553322 221 35567777777765544221 1111222222222 234443 44
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc----cCh----hHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSI---TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK----HSP----DLV 178 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i---~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~----~~p----~~v 178 (323)
.+-|.++=- ++...+-++-.+... -++++++.+.+.++.--..+++|+|.+|+++.+.+.+ ..+ .++
T Consensus 363 ~~~i~~~~~--~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~ 440 (574)
T smart00638 363 KQWIKNKKI--TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL 440 (574)
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Confidence 555555322 223333334443333 3668888888887776777899999999999886553 221 223
Q ss_pred HHHHH----HHHHHhcCCChH---HHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhccc
Q psy18014 179 KRWVN----EVQEALNSENVM---VQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS 251 (323)
Q Consensus 179 ~~~~~----~l~~~l~d~~~~---V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~ 251 (323)
+.+++ .+.++..+++.- +...|++ +-..+..+..+.+.+....-..+.....-+.-+.++....|
T Consensus 441 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-----N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--- 512 (574)
T smart00638 441 EELLKYLHELLQQAVSKGDEEEIQLYLKALG-----NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--- 512 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCchheeeHHHhhh-----ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc---
Confidence 44444 444554444432 2222221 11122222223333221111233555555544443322233
Q ss_pred CCCCCCchhHHHHHHHHhc--CCChhHHHHHHHHHHcccCCCHHhHhhHHHHH
Q psy18014 252 GDTNWSNSPLFDYLETCLR--HKSETVVYEAAHAIVNLRRTSARELAPAVSVL 302 (323)
Q Consensus 252 ~~~~~~~~~~~~~l~~~L~--~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l 302 (323)
....+.+.++.. ..++-|...|+-.++.... +...+......+
T Consensus 513 -------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P-~~~~l~~ia~~l 557 (574)
T smart00638 513 -------RKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP-SVALLQRIAELL 557 (574)
T ss_pred -------hHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 334455555443 3566788888888887743 245555555443
No 168
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=56.48 E-value=28 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=22.1
Q ss_pred hHhhhhhhhhhcCCCChHHHhHHHHHh
Q psy18014 106 VIIVTSSLTKDMTGKEDLYRAAAIRAL 132 (323)
Q Consensus 106 ~lL~iNsl~kDl~~~N~~ir~lALr~L 132 (323)
.--++.+|+|-++++||.+.-.||..|
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LL 65 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLL 65 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 456778899999999998888888755
No 169
>KOG2933|consensus
Probab=56.25 E-value=1.3e+02 Score=28.72 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHH---HHHhhCCCchhhH---HHHHHHHHHhccCCChHHHHHH
Q psy18014 90 RMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAA---IRALCSITDTTMI---QAIERYMKQAIVDRNSAVSSAA 163 (323)
Q Consensus 90 kl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lA---Lr~L~~i~~~~~~---~~l~~~v~~~L~d~~~yVRk~A 163 (323)
..-|+..+++..- ++.-.+.+...+-|.|.+=....-+ +|+|+....+.+- ..+.-.|.+.+.....-|-|+|
T Consensus 71 ~~e~~~sk~l~~f-d~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA 149 (334)
T KOG2933|consen 71 SVEYIVSKNLSPF-DDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAA 149 (334)
T ss_pred cHHHhhhcccCcc-CcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 5567776666542 2233445556666777665555444 4555555554443 3344567788888999999999
Q ss_pred HHHHHhhhccChhHHHH-HHHHHHHHhcC---CChHHHHHHHHHHHHH
Q psy18014 164 VVSIFHMTKHSPDLVKR-WVNEVQEALNS---ENVMVQYHALGLLYHI 207 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~-~~~~l~~~l~d---~~~~V~~~al~ll~~l 207 (323)
|+|+.-+|...-+.+-. ....+..++.. .|..|+-.|..+|..+
T Consensus 150 ~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aM 197 (334)
T KOG2933|consen 150 CMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAM 197 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 99999998766554432 22233333332 3345555554444333
No 170
>KOG2149|consensus
Probab=56.16 E-value=2e+02 Score=28.29 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=45.0
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHH----HHHHHHHHHhcCCChHHHHHHHHH
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK----RWVNEVQEALNSENVMVQYHALGL 203 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~----~~~~~l~~~l~d~~~~V~~~al~l 203 (323)
+..-+.|.++-||+.|.-++-.++..+|+.+. ..+..+..+..|.+..|-....-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~ql 122 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQL 122 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHH
Confidence 44557799999999999999999999998765 367788888999987776665444
No 171
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=55.38 E-value=1.1e+02 Score=24.58 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcChhh
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSE-NVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~-~~~V~~~al~ll~~l~~~d~~~ 214 (323)
+++..|+++-++..--...+-+-.++..-...|+-...+...+..-+.+. +..+++-++.+++.+-++++..
T Consensus 2 ~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~ 74 (127)
T smart00273 2 DLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPR 74 (127)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHH
Confidence 35566778777755333333333344444556677777888888888776 8899999999998877665543
No 172
>KOG2759|consensus
Probab=53.50 E-value=28 Score=34.28 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCCC-hHHHHHHHHHHHhhhccChh---HHHH--HHHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 143 AIERYMKQAIVDRN-SAVSSAAVVSIFHMTKHSPD---LVKR--WVNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 143 ~l~~~v~~~L~d~~-~yVRk~A~~~~~kl~~~~p~---~v~~--~~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
.+.+-+.+.|..++ |-+---||.=+....+.+|+ .+++ ....+.++++..||.|-|||+....
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 34555556665555 98988898888888888886 3454 5778999999999999999986543
No 173
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=53.46 E-value=38 Score=28.60 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHhhhccChhHHHH-HHHHHHHHhcCCCh---HHHHHHHHHHHHHHhc------ChhhHHHHHHHHh
Q psy18014 154 DRNSAVSSAAVVSIFHMTKHSPDLVKR-WVNEVQEALNSENV---MVQYHALGLLYHIRKS------DQLAVTKLVAKLT 223 (323)
Q Consensus 154 d~~~yVRk~A~~~~~kl~~~~p~~v~~-~~~~l~~~l~d~~~---~V~~~al~ll~~l~~~------d~~~~~~lv~~L~ 223 (323)
...+.||..|.++..|+.+..++...+ +.+.+...+.+.+. .....+++.++-+-.+ ....+...+-.+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 355667777777777776555555443 44444555443221 2333334333322111 0111112222121
Q ss_pred hccCCChHHHHHHHHHHHHH-hhhhhcccCCCCCCchhHHHHHHHHhc-CCChh
Q psy18014 224 KFTMKSPYATCMLIRIVCKL-IEDQNAASGDTNWSNSPLFDYLETCLR-HKSET 275 (323)
Q Consensus 224 ~~~~~~~~~~~~llr~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~a 275 (323)
...+.++-.|..+++.+..- ...+-.. --...+.++|....+ +.++.
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~-----~I~~~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRT-----FISKNYVSWLKELYKNSKDDS 144 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHH-----CCHHHCHHHHHHHTTTCC-HH
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHH-----HHHHHHHHHHHHHHccccchH
Confidence 22356666777777766421 1111000 024666677777774 33344
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.55 E-value=2.9e+02 Score=28.37 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=80.7
Q ss_pred CcchH-hhhhhhhhhcCCCChHHHhHHHHHhhC---CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc----c-
Q psy18014 103 AEDVI-IVTSSLTKDMTGKEDLYRAAAIRALCS---ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK----H- 173 (323)
Q Consensus 103 ~~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~---i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~----~- 173 (323)
.+.++ ++.+.|.++--++.+..+ +|..+.. --+++++..+...++.--..++++++.+|+++.+.+.+ .
T Consensus 393 T~~av~~i~~~I~~~~~~~~ea~~--~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDDEAAQ--LLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HHHHHH--HHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 34444 455556653333333333 3333333 34557788888777776667889999999999876542 2
Q ss_pred ---------ChhHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHH
Q psy18014 174 ---------SPDLVK----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIV 240 (323)
Q Consensus 174 ---------~p~~v~----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~ 240 (323)
...+.+ .+...+.......|.....-++-.|.-+. .+..+..+.+.+. +.+.+...+|..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g--~~~~i~~l~~~i~-----~~~~~~~~~R~~ 543 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG--HPESIPVLLPYIE-----GKEEVPHFIRVA 543 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GGGHHHHHTTST-----TSS-S-HHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--CchhhHHHHhHhh-----hccccchHHHHH
Confidence 122233 34445554555544322222222222221 1222222222221 212333334443
Q ss_pred HHHhhhhhcccCCCCCCchhHHHHHHHHhcC--CChhHHHHHHHHHHcccCCCHHhHhhHHHH
Q psy18014 241 CKLIEDQNAASGDTNWSNSPLFDYLETCLRH--KSETVVYEAAHAIVNLRRTSARELAPAVSV 301 (323)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~ 301 (323)
+-..-..-.. .......+.+-++..+ .+.-|...|...++.... +...+......
T Consensus 544 Ai~Alr~~~~-----~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P-~~~~l~~i~~~ 600 (618)
T PF01347_consen 544 AIQALRRLAK-----HCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNP-SPSVLQRIAQS 600 (618)
T ss_dssp HHHTTTTGGG-----T-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----HHHHHHHHHH
T ss_pred HHHHHHHHhh-----cCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3210000000 0124555666666543 445788888888877633 24455444433
No 175
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.24 E-value=3.1e+02 Score=28.64 Aligned_cols=164 Identities=20% Similarity=0.171 Sum_probs=89.9
Q ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHH-HHHhhcCCCchhHHHHHHHHHH-h-cccCc
Q psy18014 28 KTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFA-MTKLFQSKDVILRRMVYLGIKE-L-SNIAE 104 (323)
Q Consensus 28 k~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~-vvkl~~s~d~~lKkl~Ylyl~~-~-~~~~~ 104 (323)
+...+.|++.....- ...+++.++-==++++..|.. |+ +.+ +.++..++|..+|-=|-+.+.. | +..+.
T Consensus 479 s~eai~dm~tya~ET-qhe~i~Rglgig~aLi~ygrq----e~---add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~ 550 (926)
T COG5116 479 SVEAIEDMRTYAGET-QHERIKRGLGIGFALILYGRQ----EM---ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL 550 (926)
T ss_pred CHHHHHHHHHHhcch-hhhhHHhhhhhhhhHhhhhhH----HH---HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc
Confidence 445667776665442 234444566555666666642 22 222 5667787887777555444321 2 11111
Q ss_pred chHhhhhhhhhh-cCCCChHHHhHHHHHhhC--CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHH
Q psy18014 105 DVIIVTSSLTKD-MTGKEDLYRAAAIRALCS--ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW 181 (323)
Q Consensus 105 ~~lL~iNsl~kD-l~~~N~~ir~lALr~L~~--i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~ 181 (323)
=++.++..= .+|.|+-+|-.|.-+|+= .++++.+...++.+.+ +.+++||-..++++.-.+-...+-+ .
T Consensus 551 ---~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~---shN~hVR~g~AvaLGiacag~G~~~--a 622 (926)
T COG5116 551 ---GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSE---SHNFHVRAGVAVALGIACAGTGDKV--A 622 (926)
T ss_pred ---hhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhh---ccchhhhhhhHHHhhhhhcCCccHH--H
Confidence 122233332 478899999988888763 4455554444433333 5779999988887765554333322 3
Q ss_pred HHHHHHHhcCCChHHHHHH-HHHHHHH
Q psy18014 182 VNEVQEALNSENVMVQYHA-LGLLYHI 207 (323)
Q Consensus 182 ~~~l~~~l~d~~~~V~~~a-l~ll~~l 207 (323)
.+-+..+..|.+..|-..| +++-+.+
T Consensus 623 ~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 623 TDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 3344445567777775555 4443333
No 176
>KOG2011|consensus
Probab=50.69 E-value=65 Score=35.53 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=66.8
Q ss_pred cCCCChHHHhHHHHHhhC---CCchhhH-HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh--HH----HHHHHHHH
Q psy18014 117 MTGKEDLYRAAAIRALCS---ITDTTMI-QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD--LV----KRWVNEVQ 186 (323)
Q Consensus 117 l~~~N~~ir~lALr~L~~---i~~~~~~-~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~--~v----~~~~~~l~ 186 (323)
..|-.|.||+.-+-.||- .-+.-+. ....+|+.=+|.|++.-||++.+-++.+||.+..+ -+ .+|.+++-
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 367789999988888763 2233333 34568999999999999999999999999987432 22 36788888
Q ss_pred HHh-cCCChHHHHHHHHHHHHH
Q psy18014 187 EAL-NSENVMVQYHALGLLYHI 207 (323)
Q Consensus 187 ~~l-~d~~~~V~~~al~ll~~l 207 (323)
+|. .|.+++|..+++.++...
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHH
Confidence 887 556778888876654433
No 177
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=50.56 E-value=1.6e+02 Score=24.99 Aligned_cols=67 Identities=7% Similarity=0.146 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hhHH-H---HHHHHHHHHhcCCCh-HHHHHHHHH
Q psy18014 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLV-K---RWVNEVQEALNSENV-MVQYHALGL 203 (323)
Q Consensus 137 ~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v-~---~~~~~l~~~l~d~~~-~V~~~al~l 203 (323)
....+..+..-+-+.|.+++++-|=.++.-+.-+++.. +|.. + .|+..+...+.+.+| .+...++..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIIT 91 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56677788888999999999999998877666677765 7876 3 599999999998776 444455443
No 178
>KOG2259|consensus
Probab=50.40 E-value=3.3e+02 Score=28.80 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHH----HHHHHHh-ccc---C------cchHhhhhhhh
Q psy18014 49 THILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMV----YLGIKEL-SNI---A------EDVIIVTSSLT 114 (323)
Q Consensus 49 ~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~----Ylyl~~~-~~~---~------~~~lL~iNsl~ 114 (323)
+.++.-++.+.. |-.++ -..|-..++.+.-++..+++-. .+|-..+ ++. . |.+|. ++.
T Consensus 216 t~A~eglL~L~e-g~kL~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~---~vC 287 (823)
T KOG2259|consen 216 THAVEGLLALSE-GFKLS----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFS---SVC 287 (823)
T ss_pred HHHHHHHHhhcc-ccccc----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHH---HHH
Confidence 367766666655 65433 2456677888888887777644 4443333 121 1 22333 233
Q ss_pred hhcCCCChHHHhHHHHHhhCCCc--hhhHH-HHHHHHH------------------------------------------
Q psy18014 115 KDMTGKEDLYRAAAIRALCSITD--TTMIQ-AIERYMK------------------------------------------ 149 (323)
Q Consensus 115 kDl~~~N~~ir~lALr~L~~i~~--~~~~~-~l~~~v~------------------------------------------ 149 (323)
.=+.|-.-.||-.|-+.++.+.. .++++ .+.+-+.
T Consensus 288 ~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~ 367 (823)
T KOG2259|consen 288 RAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEE 367 (823)
T ss_pred HHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccc
Confidence 33344455777777777776652 23333 2223222
Q ss_pred ------------HhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 150 ------------QAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 150 ------------~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
.+|.|.-..||++|+-++++|-...|+...+.++.+.+|++|....|-.-|+..|..|..+
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 2344444679999999999999999999999999999999999988887777766666543
No 179
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=49.65 E-value=25 Score=20.55 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHhHHHHHhhCCCchhhHHHHHHH
Q psy18014 123 LYRAAAIRALCSITDTTMIQAIERY 147 (323)
Q Consensus 123 ~ir~lALr~L~~i~~~~~~~~l~~~ 147 (323)
.+|-.|..+|+++..++-++.+...
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~~ 26 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIKA 26 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHH
Confidence 4667777777777776655554443
No 180
>KOG2759|consensus
Probab=48.99 E-value=19 Score=35.51 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHhcCCC-hhHHHHHHHHHHcc---cCCCHHhH--hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 257 SNSPLFDYLETCLRHKS-ETVVYEAAHAIVNL---RRTSAREL--APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 257 ~~~~~~~~l~~~L~~~~-~aV~~ea~k~i~~l---~~~~~~~~--~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
....++..|..+|+.++ +.++-=|+.=|-.+ .+....++ -.+...+-.+++++||++||=||.++
T Consensus 363 nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 363 NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 45677788888888776 54444444444333 22122333 46788899999999999999999764
No 181
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=48.81 E-value=1.6e+02 Score=24.56 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 164 VVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
++-+.-.+...++-.++.+..+..-+..+||.|+..|+.++..+.++.+..+
T Consensus 21 il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 21 ILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 3445555555666677788888888899999999999999999888766554
No 182
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=47.93 E-value=39 Score=32.38 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=40.1
Q ss_pred CchhHHHHHHHHhcCCChh-HHHHHHHHHHcc---cCCCHHhH--hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 257 SNSPLFDYLETCLRHKSET-VVYEAAHAIVNL---RRTSAREL--APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 257 ~~~~~~~~l~~~L~~~~~a-V~~ea~k~i~~l---~~~~~~~~--~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+...++..+..+++++++. .+-=|+.-|.++ .+...+++ -.+...+-.+++++|+.+||-||.++
T Consensus 353 dny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 353 DNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQAL 423 (432)
T ss_pred hhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHH
Confidence 3455666677777766654 222222222222 22122333 46778888999999999999999875
No 183
>KOG2933|consensus
Probab=47.62 E-value=1.3e+02 Score=28.64 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=72.8
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhccc------CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHH
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNI------AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIE 145 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~------~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~ 145 (323)
.+-+.|++-+.+..-.+=|-....+..+... .+.-.+++--+.|-- ..|-+||.-|.++|-.....---+.++
T Consensus 129 ~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp~~~L 207 (334)
T KOG2933|consen 129 EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTPQKLL 207 (334)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccChHHHH
Confidence 4556778888888888888888776665321 122345665444444 449999998888887776666667777
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhhhc
Q psy18014 146 RYMKQAIVDRNSAVSSAAVVSIFHMTK 172 (323)
Q Consensus 146 ~~v~~~L~d~~~yVRk~A~~~~~kl~~ 172 (323)
+.+..++.|.+|-||.+|++|..+...
T Consensus 208 ~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 208 RKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHhhhchhhhhhhhccccccce
Confidence 888888999999999999999876653
No 184
>KOG0168|consensus
Probab=47.49 E-value=64 Score=34.78 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=52.4
Q ss_pred hhhHHHHHHHH----HHhccC-CChHHHHHHHHHHHhhh-ccChhHHHHH------HHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 138 TTMIQAIERYM----KQAIVD-RNSAVSSAAVVSIFHMT-KHSPDLVKRW------VNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 138 ~~~~~~l~~~v----~~~L~d-~~~yVRk~A~~~~~kl~-~~~p~~v~~~------~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
|++.+.+.+.+ .+...+ -+|+||.+++.+++|+. -.+++++..+ -..+..++..+|+.|+.-|+.+..
T Consensus 546 pel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE 625 (1051)
T KOG0168|consen 546 PELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE 625 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence 46665555544 444444 67999999999999965 5668888754 345788899999988888887766
Q ss_pred HHHhc
Q psy18014 206 HIRKS 210 (323)
Q Consensus 206 ~l~~~ 210 (323)
.+-+.
T Consensus 626 iLmeK 630 (1051)
T KOG0168|consen 626 ILMEK 630 (1051)
T ss_pred HHHHH
Confidence 65443
No 185
>KOG1943|consensus
Probab=46.97 E-value=1.1e+02 Score=33.93 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-hHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc
Q psy18014 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-DLVKRWVNEVQEALNSEN-VMVQYHALGLLYHIRKS 210 (323)
Q Consensus 137 ~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-~~v~~~~~~l~~~l~d~~-~~V~~~al~ll~~l~~~ 210 (323)
.|+++|.+...+.+++.|.+..||=+|+-+++|+....| +++...+..+-+.++-.+ +..--.|..++.|+...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999997775 566666666666555444 23333344446666543
No 186
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=46.94 E-value=36 Score=20.77 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=20.5
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhh
Q psy18014 144 IERYMKQAIVDRNSAVSSAAVVSIFHM 170 (323)
Q Consensus 144 l~~~v~~~L~d~~~yVRk~A~~~~~kl 170 (323)
..+++.+.+.+.++.+++.|+-++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 355666777788899999988887765
No 187
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=46.24 E-value=88 Score=24.79 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=42.5
Q ss_pred HHHHHhccCCC-----hHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh
Q psy18014 146 RYMKQAIVDRN-----SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 146 ~~v~~~L~d~~-----~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~ 214 (323)
..|+++-++.+ .|||.-...+ ...+.-+..+...+..-+.++|..|++=++.+++.+-+++...
T Consensus 3 ~aV~kAT~~~~~~pk~k~v~~ii~~t-----~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~ 71 (117)
T cd03564 3 KAVKKATSHDEAPPKDKHVRKIIAGT-----SSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPS 71 (117)
T ss_pred hHHHhhcCCCCCCCChHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHH
Confidence 34556666544 5566553332 3335556677778888888899999999999998876554433
No 188
>KOG2274|consensus
Probab=45.23 E-value=4.5e+02 Score=28.82 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=64.3
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCC----hHHHHHHHHHHHhhhccChhHHH----H
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRN----SAVSSAAVVSIFHMTKHSPDLVK----R 180 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~----~yVRk~A~~~~~kl~~~~p~~v~----~ 180 (323)
.+|.+..| .-|.+|..|+|+.|....++.+..+.+.|.++|.+=. ..|----.-++...+..+|+-.- +
T Consensus 495 ~v~~l~~~---~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~sk 571 (1005)
T KOG2274|consen 495 TVNALTMD---VPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESK 571 (1005)
T ss_pred HHHhhccC---CCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcc
Confidence 46666665 4568999999999999999999888888888776633 34443333334455566776432 3
Q ss_pred HHHHHHHH--hcCCChHHHHHHHHHHHHHHh
Q psy18014 181 WVNEVQEA--LNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 181 ~~~~l~~~--l~d~~~~V~~~al~ll~~l~~ 209 (323)
..+....+ ....||.|+.-+.-++.++..
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44444333 235678888877777666643
No 189
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=45.21 E-value=34 Score=22.17 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHH
Q psy18014 166 SIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGL 203 (323)
Q Consensus 166 ~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~l 203 (323)
|+..+...+|.+.. .+...+...+.|.+|.|--+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34566677888764 688889999999999999888754
No 190
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=44.75 E-value=38 Score=26.92 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=22.7
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~ 187 (323)
+..+|.|++++||-.|+...++ ..|+..++.+.++-+
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~---~~p~eA~~~Le~ia~ 88 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLR---YAPEEARKVLEEIAS 88 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTT---T-HHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHH---hCHHHHHHHHHHHHH
Confidence 4557778888888776654444 477777666666654
No 191
>KOG4653|consensus
Probab=44.20 E-value=4.6e+02 Score=28.63 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=46.8
Q ss_pred hhhhhhhhhcCCCChHHHhHHHHHhhCC---Cc----hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh
Q psy18014 108 IVTSSLTKDMTGKEDLYRAAAIRALCSI---TD----TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 108 L~iNsl~kDl~~~N~~ir~lALr~L~~i---~~----~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p 175 (323)
..+|++.+-..+|..-.|+.++-.++.+ .. .-+.+-+..-+.-.-.|.++.|||+|+.-+..+.+.-.
T Consensus 847 ~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 847 VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 5789999999999888888776655433 22 23333333333444568899999999998888776443
No 192
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=42.47 E-value=51 Score=28.62 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=32.8
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCC
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDR 155 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~ 155 (323)
+..-|..... +||.||.-|+|+|-+..+.++.-++..-|+..=-|.
T Consensus 73 ALell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~ 118 (175)
T cd00871 73 ALSLFTPQYP-GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDK 118 (175)
T ss_pred HHHHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 3334444333 489999999999999999999888888654433344
No 193
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=41.75 E-value=4.3e+02 Score=27.63 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=53.1
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCch-------hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDT-------TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD 176 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~-------~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~ 176 (323)
+--.+...++++|-.-|-.|.-+++++... .++++..+.|....+|+.-.|+.+++-|++++-.+-|+
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 555677788888888888888888888653 35677778888888999999999999998877654443
No 194
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=41.02 E-value=41 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcC
Q psy18014 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNS 191 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d 191 (323)
.+.+...+.+.|.++++-|.|.|+-|++.- + +| .+....+.+..+++|
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~-k-~~-~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW-K-DP-YLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-cH-HHHhHHHHHHHHcCc
Confidence 456666777888888888888888877652 2 22 222344444444444
No 195
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=40.21 E-value=2.3e+02 Score=24.02 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 167 IFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 167 ~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+.++++.+++.....++.+.+-+-...+....+=+.+|..+....+...
T Consensus 42 L~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~v 90 (158)
T PF14676_consen 42 LLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTV 90 (158)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHH
Confidence 4567777776666655555443332222212233567777776665544
No 196
>KOG1293|consensus
Probab=39.94 E-value=4.7e+02 Score=27.51 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH-
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV- 215 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~- 215 (323)
.++..++.+.+.|++..|.+++.=++..+.-.+.+.=. .+++.+..++.+.++.+...++.+|+.+.-++....
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 45566777788999999999999999988866655443 367789999999999999999999988876655443
Q ss_pred ----HHHHHHHhhc--cCCChHHHHHHHHHHHHH
Q psy18014 216 ----TKLVAKLTKF--TMKSPYATCMLIRIVCKL 243 (323)
Q Consensus 216 ----~~lv~~L~~~--~~~~~~~~~~llr~~~~~ 243 (323)
.++-..+... +-+++-.|-+.+..++.+
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2222222111 113334666666666655
No 197
>KOG0211|consensus
Probab=39.44 E-value=1.2e+02 Score=32.39 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=60.6
Q ss_pred ChHHHhHHHH---HhhCCCchh-hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hhHHH-HHHHHHHHHhcCCCh
Q psy18014 121 EDLYRAAAIR---ALCSITDTT-MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLVK-RWVNEVQEALNSENV 194 (323)
Q Consensus 121 N~~ir~lALr---~L~~i~~~~-~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v~-~~~~~l~~~l~d~~~ 194 (323)
|-.+|-..+. .+..+...+ ..+++.+.+.++..|+.|.||=+|+--+.++.+.- ++..+ ...+.+..+..|.|.
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL 649 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence 6666655444 445554444 47899999999999999999999999888877544 44443 466777777789998
Q ss_pred HHHHHHHH
Q psy18014 195 MVQYHALG 202 (323)
Q Consensus 195 ~V~~~al~ 202 (323)
.|-|.|.-
T Consensus 650 dvr~~a~~ 657 (759)
T KOG0211|consen 650 DVRYRAIL 657 (759)
T ss_pred chhHHHHH
Confidence 88888743
No 198
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=39.06 E-value=3.4e+02 Score=25.59 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=85.9
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhhhccC--hhHHHH----HHHHHHHHhcCCChH---HHHHHHHHHHHHHh--cChhh
Q psy18014 146 RYMKQAIVDRNSAVSSAAVVSIFHMTKHS--PDLVKR----WVNEVQEALNSENVM---VQYHALGLLYHIRK--SDQLA 214 (323)
Q Consensus 146 ~~v~~~L~d~~~yVRk~A~~~~~kl~~~~--p~~v~~----~~~~l~~~l~d~~~~---V~~~al~ll~~l~~--~d~~~ 214 (323)
......+.+++.-.|-.|+-++.+++... ++.+.+ +++.+...+..+.+- ...++++++..--. .+...
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34556667788888888888888877433 666653 455566666665542 22233333332211 11122
Q ss_pred -HHHHHHHHh---hccCCChHHHHHHHHHHH---HHhhhhhcccCCCCCCchhHHHHHH-----HHhcCC----------
Q psy18014 215 -VTKLVAKLT---KFTMKSPYATCMLIRIVC---KLIEDQNAASGDTNWSNSPLFDYLE-----TCLRHK---------- 272 (323)
Q Consensus 215 -~~~lv~~L~---~~~~~~~~~~~~llr~~~---~~~~~~~~~~~~~~~~~~~~~~~l~-----~~L~~~---------- 272 (323)
+..+.+.|. ...-.++-.-...+..++ -+...+++ +....++.++ .+.+..
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~-------~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE-------ETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh-------HHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 223333332 222122222122332222 12122222 2443333333 223322
Q ss_pred ChhHHHHHHHHHHcc-cCCCH----HhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 273 SETVVYEAAHAIVNL-RRTSA----RELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 273 ~~aV~~ea~k~i~~l-~~~~~----~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+++|+-.|+..-.-+ +..+. .....+...+..+|.++|.++|.+|=.++
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai 252 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI 252 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 246777776665433 22222 34567888999999999999999986654
No 199
>KOG2229|consensus
Probab=39.06 E-value=4.5e+02 Score=26.99 Aligned_cols=149 Identities=12% Similarity=0.217 Sum_probs=83.3
Q ss_pred HhhhccChhHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhcChhhHHHHHHHHh---hccCC--ChHHHHHHHH
Q psy18014 168 FHMTKHSPDLVKRWVNEVQEALNSE----NVMVQYHALGLLYHIRKSDQLAVTKLVAKLT---KFTMK--SPYATCMLIR 238 (323)
Q Consensus 168 ~kl~~~~p~~v~~~~~~l~~~l~d~----~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~---~~~~~--~~~~~~~llr 238 (323)
.++.+-+|+....|=.++.++|... .|....+-+..|-.++..+-.....|+.-+- ..+-. -.++...|+.
T Consensus 4 aqv~~~yp~~~a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~ 83 (616)
T KOG2229|consen 4 AQVCPCYPEVLANFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVT 83 (616)
T ss_pred hhcccccHHHHHhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4556667888878888888888765 3455555444455555544444333333321 11100 1133333333
Q ss_pred HHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHH
Q psy18014 239 IVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAV 318 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL 318 (323)
.+... +... -+|+....+-.++-+.|..++++-.--|+.+++.+..-..=.-..+++.+...+=|++|-|..+||
T Consensus 84 ~Ikn~---n~~~--kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l 158 (616)
T KOG2229|consen 84 TIKNI---NKKH--KNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGL 158 (616)
T ss_pred HHHHH---Hhhc--ccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhh
Confidence 33311 1100 012344566678888888888877777788888775321111255666666667778889988888
Q ss_pred hhh
Q psy18014 319 RTL 321 (323)
Q Consensus 319 ~~l 321 (323)
+-+
T Consensus 159 ~Ff 161 (616)
T KOG2229|consen 159 RFF 161 (616)
T ss_pred HHh
Confidence 754
No 200
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=37.33 E-value=1.2e+02 Score=25.14 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=23.5
Q ss_pred hhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC
Q psy18014 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD 154 (323)
Q Consensus 113 l~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d 154 (323)
+..=|.++++-|+.+||.|+.....+.+.+|- ..+.+.+.|
T Consensus 22 ~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~-d~L~~Lldd 62 (141)
T PF07539_consen 22 LLRLLSSRDPEVQKLALDCLLTWKDPYLTPYK-DNLENLLDD 62 (141)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHH-HHHHHHcCc
Confidence 33444666666666666666666666555552 444444443
No 201
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.33 E-value=1.8e+02 Score=30.12 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=64.2
Q ss_pred hHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy18014 126 AAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 126 ~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~ 205 (323)
|.||-+|+-=...+| +.+.+-..+.-.++.+|+.--+|..-++..+|.+ +.++.+...+.|.+-.|.++++-.+-
T Consensus 627 g~AliamGedig~eM---vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm--~vfDtL~r~shd~dl~v~~ntIfamG 701 (881)
T COG5110 627 GCALIAMGEDIGSEM---VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM--NVFDTLERSSHDGDLNVIINTIFAMG 701 (881)
T ss_pred hhHHhhhcchhhHHH---HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch--HHHHHHHHhccccchhHHHHHHHHhh
Confidence 334444443333444 4567777777899999999999999999999986 46788888899999999999876655
Q ss_pred HHHhcC-hhhHHHHHHHHh
Q psy18014 206 HIRKSD-QLAVTKLVAKLT 223 (323)
Q Consensus 206 ~l~~~d-~~~~~~lv~~L~ 223 (323)
.+-... ..-+.++++++.
T Consensus 702 LiGAGT~NaRlaqlLrQla 720 (881)
T COG5110 702 LIGAGTLNARLAQLLRQLA 720 (881)
T ss_pred ccccCcchHHHHHHHHHHH
Confidence 543221 112345565553
No 202
>KOG0413|consensus
Probab=36.86 E-value=1.3e+02 Score=33.30 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=67.3
Q ss_pred HHHhHHHHHhhCCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH---HHHHHHHHHHhcCCChH
Q psy18014 123 LYRAAAIRALCSIT----DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV---KRWVNEVQEALNSENVM 195 (323)
Q Consensus 123 ~ir~lALr~L~~i~----~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v---~~~~~~l~~~l~d~~~~ 195 (323)
-++-.|.+.+.++. ...+.+...--++....|+---|||+++-++.++....|-++ .+|+..+.-++.|.+..
T Consensus 592 ~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~ 671 (1529)
T KOG0413|consen 592 PVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESD 671 (1529)
T ss_pred ccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHH
Confidence 45555666655543 345666666677888889999999999999999998888776 57999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy18014 196 VQYHALGLLYHI 207 (323)
Q Consensus 196 V~~~al~ll~~l 207 (323)
|..+|+-++..+
T Consensus 672 v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 672 VTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHHHHH
Confidence 999998765543
No 203
>PHA02922 hypothetical protein; Provisional
Probab=36.49 E-value=1.8e+02 Score=24.30 Aligned_cols=71 Identities=14% Similarity=0.003 Sum_probs=53.7
Q ss_pred CCCchhHHHHHHHHHHhcc---c-CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCCh
Q psy18014 83 SKDVILRRMVYLGIKELSN---I-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNS 157 (323)
Q Consensus 83 s~d~~lKkl~Ylyl~~~~~---~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~ 157 (323)
.+|...=-.=|+||..++= . ...++.+--++++|-. .+-|--+|.+.+-.+.+=++.....|+-.+.+.+.
T Consensus 23 ~DdI~~~i~DYiyWSs~~~r~Re~AG~vf~vleSFr~DAe----~VFg~nlr~fVk~~s~~gv~~s~~~I~c~l~~dn~ 97 (153)
T PHA02922 23 VADVRHCLTEYILWVSHRWTHRESAGSLYRLLISFRTDAT----ELFGSELKEFSDSLPWDNIDNCVEIIKCFIRNDSM 97 (153)
T ss_pred cchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHH----HHHHHHHHHHHHhCchhhhHHHHHHHHHHhccccH
Confidence 3455555567999999952 2 2336778889999965 78888888888887888888888888887777665
No 204
>KOG0904|consensus
Probab=35.89 E-value=44 Score=36.01 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.1
Q ss_pred hcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC
Q psy18014 116 DMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD 154 (323)
Q Consensus 116 Dl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d 154 (323)
|++=|+|.||+-|+|+|-.+.+.++.+++.+-| |++..
T Consensus 619 d~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLV-QalKy 656 (1076)
T KOG0904|consen 619 DCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLV-QALKY 656 (1076)
T ss_pred cCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHH-HHHhc
Confidence 888899999999999999999999999999854 44543
No 205
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.62 E-value=3.3e+02 Score=24.42 Aligned_cols=134 Identities=15% Similarity=0.068 Sum_probs=78.9
Q ss_pred cCCCchhHHHHHHHHHHhcccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhh--HHHHHHHHHH-------h
Q psy18014 82 QSKDVILRRMVYLGIKELSNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM--IQAIERYMKQ-------A 151 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~--~~~l~~~v~~-------~ 151 (323)
...|.....-..-.+-.++... ...-+++.++..=...+....++.++|.++.+-..+- .+.+.+.+.. .
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 3344444433333444444433 3345666666666666666668888888887654322 1233322322 2
Q ss_pred ccCCC--hHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 152 IVDRN--SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL-NSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 152 L~d~~--~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l-~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
..+.+ -.+.-..+.++.-++...|+.-.+++..+.+.+ .+.++.+...|+-.+..+.+.+-..+
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~ 157 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF 157 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH
Confidence 22222 222223234556677778887778899999999 68888888888888888876655544
No 206
>KOG1243|consensus
Probab=35.36 E-value=3.6e+02 Score=28.48 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=66.3
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhC----CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hhHH-HHHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCS----ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLV-KRWV 182 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~----i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v-~~~~ 182 (323)
++-.|.|=..++...+|..=|+-+-. +..+.+-..+.+.+..++.|.||.+|=.++.++..+...- +..+ .+.+
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell 410 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL 410 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH
Confidence 34456677788888999888876544 4445567788899999999999999999999988776433 3322 2344
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 183 NEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 183 ~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
..+...-.|.++..-.+...++..
T Consensus 411 r~~ar~q~d~~~~irtntticlgk 434 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGK 434 (690)
T ss_pred HHHHhhCccccCcccccceeeecc
Confidence 555555456655555554433333
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=35.08 E-value=2.7e+02 Score=23.31 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhc--CCChhHHHHHHHHHHcccCCC---HHhHhhHHHHHHHHh
Q psy18014 232 ATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLR--HKSETVVYEAAHAIVNLRRTS---ARELAPAVSVLQLFC 306 (323)
Q Consensus 232 ~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~aV~~ea~k~i~~l~~~~---~~~~~~~~~~l~~~L 306 (323)
..+..+..+..++|-.|+..... -..+.+++.+.+..+ ..+..+...+++++..-.... ..........|...+
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l-~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSEL-FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHH-CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHH-HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 44455566666655544321000 013567777877777 788889999999887665421 123477888888888
Q ss_pred c-CCChh-hHHHHHhhh
Q psy18014 307 S-SPKPV-LRFAAVRTL 321 (323)
Q Consensus 307 ~-s~~~n-iry~aL~~l 321 (323)
+ +++.. +|..|+=.|
T Consensus 138 ~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 138 KNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TTCC-HH-CHHHHHHHH
T ss_pred ccccchHHHHHHHHHHH
Confidence 5 44444 677776444
No 208
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=34.75 E-value=3e+02 Score=23.81 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=46.9
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhc
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L 152 (323)
..+.++..+.-.+....+-.|-.+...++.+++ -+..-|.++..| +.||.-|++.|.+..+.++..++.. +.++|
T Consensus 46 aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~--~AL~LL~~~f~~--~~VR~yAv~~L~~~~d~~l~~yLpQ-LVQaL 120 (184)
T PF00613_consen 46 ALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPE--DALELLSPNFPD--PFVRQYAVRRLESLSDEELLFYLPQ-LVQAL 120 (184)
T ss_dssp GHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHH--HHHHCTSTT-----HHHHHHHHHHHCTS-HHHHHHHHHH-HHHHG
T ss_pred HHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHH--HHHHHHHhhccH--HHHHHHHHHHHHHcCchHHHHHHHH-HHHHh
Confidence 344445556667777677777777766664332 234445555555 8999999999999877777766666 44444
Q ss_pred c
Q psy18014 153 V 153 (323)
Q Consensus 153 ~ 153 (323)
.
T Consensus 121 r 121 (184)
T PF00613_consen 121 R 121 (184)
T ss_dssp G
T ss_pred e
Confidence 4
No 209
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=34.62 E-value=4.5e+02 Score=25.78 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=101.8
Q ss_pred hHHHHHHHH--HHccCCCCChHHHHHHHHHHHHHHHcC-C-CCCchhhhhhHHHHHHhhcCCCchhHHHHHHH-HHHhc-
Q psy18014 27 DKTAVLQEA--RTFNDTPVNPKKCTHILTKILYLINQG-E-QLGTQEATDAFFAMTKLFQSKDVILRRMVYLG-IKELS- 100 (323)
Q Consensus 27 ek~~i~qe~--~~f~~~~~~~~k~~~~l~kli~~~~~G-~-~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Yly-l~~~~- 100 (323)
.+++.+... +-+..-.....-.|..+..+++...-+ + .+|=.|.-+++..+++.++.+-.+.-+..+.- +.-+.
T Consensus 148 rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~ 227 (409)
T PF01603_consen 148 RERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHK 227 (409)
T ss_dssp HHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGG
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc
Confidence 355555552 344444445566667777777755554 2 35656777888888887776554433333221 11111
Q ss_pred -----ccC-cchHhhhhhhhhhcCCCChHHHhH--------------HHHHhhCCC---c----hhhHHHHHHHHHHhcc
Q psy18014 101 -----NIA-EDVIIVTSSLTKDMTGKEDLYRAA--------------AIRALCSIT---D----TTMIQAIERYMKQAIV 153 (323)
Q Consensus 101 -----~~~-~~~lL~iNsl~kDl~~~N~~ir~l--------------ALr~L~~i~---~----~~~~~~l~~~v~~~L~ 153 (323)
... +..-.++-.+.||-+-..+.++|+ -|.-+..|. + ..+...+.+-+.+++.
T Consensus 228 ~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~ 307 (409)
T PF01603_consen 228 SPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS 307 (409)
T ss_dssp STGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 111 223345555666655555555554 333333322 2 3345667788888888
Q ss_pred CCChHHHHHHHHHH-----HhhhccChh-HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcChhhHHHHHH
Q psy18014 154 DRNSAVSSAAVVSI-----FHMTKHSPD-LVKRWVNEVQEALNSE-NVMVQYHALGLLYHIRKSDQLAVTKLVA 220 (323)
Q Consensus 154 d~~~yVRk~A~~~~-----~kl~~~~p~-~v~~~~~~l~~~l~d~-~~~V~~~al~ll~~l~~~d~~~~~~lv~ 220 (323)
+.+.-|--.|+.-. ..++..+.+ ++.-+.+.+....... |..|...|..++..+..-|+..+.+...
T Consensus 308 S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 308 SPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp SSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88888887776542 234444433 3334455554433322 5577777777777777777666544443
No 210
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=34.03 E-value=4.6e+02 Score=25.71 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred cChhhHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhh-hhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHH
Q psy18014 210 SDQLAVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIED-QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAI 284 (323)
Q Consensus 210 ~d~~~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i 284 (323)
.|+.-....++.+.+. ++.++--++..|.-+..++.. +|++ ..+....+.+.+..++++.+--|+-.|....
T Consensus 248 kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~---f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 248 KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE---FQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH---HHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444333444444333 445667777777777655432 1111 0112355678888899998888877776554
No 211
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.14 E-value=3.3e+02 Score=24.97 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHhccCCC--hHHHHHHHHHHHhhhccChhH
Q psy18014 147 YMKQAIVDRN--SAVSSAAVVSIFHMTKHSPDL 177 (323)
Q Consensus 147 ~v~~~L~d~~--~yVRk~A~~~~~kl~~~~p~~ 177 (323)
.+++.+.+++ .|||-.|+-|+..+....|..
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4555666655 999999999999998777643
No 212
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=32.86 E-value=3.4e+02 Score=23.75 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHHhccCCC-hHHHHHHHHHHHhhhcc-ChhHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 142 QAIERYMKQAIVDRN-SAVSSAAVVSIFHMTKH-SPDLV----KRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~-~yVRk~A~~~~~kl~~~-~p~~v----~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
.+..+-.-++|.... || |=-|..++..+... .++-+ .+++.-++.+|+.+|+.|...++.+|-.+...
T Consensus 37 ~~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 344555556666644 55 35566777777766 55543 35677789999999999999999888777443
No 213
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=32.78 E-value=4.7e+02 Score=25.40 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=68.2
Q ss_pred HHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHH---------HHHHHhhccCCChH
Q psy18014 166 SIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTK---------LVAKLTKFTMKSPY 231 (323)
Q Consensus 166 ~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~---------lv~~L~~~~~~~~~ 231 (323)
.+.++++.+|++-. .+.++++.++-+.+..|.++|..++-.+-.+ ...+.. ++..|.+. -.+..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~-~~~~~ 83 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRD-NKNDV 83 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhccc-CCChH
Confidence 46677888884433 4677888766666688888887776433322 222211 22223222 23344
Q ss_pred HHHHHHHHHHHHhhh--hhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHh
Q psy18014 232 ATCMLIRIVCKLIED--QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARE 294 (323)
Q Consensus 232 ~~~~llr~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~ 294 (323)
--.+-+|++.+++.- .+. ..-..++..+..+..+.++....-|+.|++.+.-..|++
T Consensus 84 ER~QALkliR~~l~~~~~~~------~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPK------EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcc------cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 444555665554322 221 123556667777777777777777888877775333444
No 214
>PF14961 BROMI: Broad-minded protein
Probab=32.71 E-value=1.5e+02 Score=33.37 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred hhhhhcCCCCh-HHHhHHHHHhhCCCchhh-----HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh
Q psy18014 112 SLTKDMTGKED-LYRAAAIRALCSITDTTM-----IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 112 sl~kDl~~~N~-~ir~lALr~L~~i~~~~~-----~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p 175 (323)
.+..-+.-.+| .+|--|+..||++-..++ +..+.+.+..+|.|+++.+.-+++--..|.+...|
T Consensus 165 ~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 165 LIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 34444444455 799999999999877766 78999999999999999999998877778886664
No 215
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=32.18 E-value=1.4e+02 Score=25.83 Aligned_cols=57 Identities=9% Similarity=0.153 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhhccChhH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh
Q psy18014 157 SAVSSAAVVSIFHMTKHSPDL--VKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 157 ~yVRk~A~~~~~kl~~~~p~~--v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~ 214 (323)
--+||+|.-|+|-+....++- +..|++.+..-+.| ++.+..-+...+..+....+..
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~ 99 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE 99 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence 458999999999887655442 45788888888888 6666555554444454444443
No 216
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.34 E-value=2.8e+02 Score=22.40 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-----hHHH-HHHHHHHHHhcCC---ChHHHHHHHHHH
Q psy18014 140 MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-----DLVK-RWVNEVQEALNSE---NVMVQYHALGLL 204 (323)
Q Consensus 140 ~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-----~~v~-~~~~~l~~~l~d~---~~~V~~~al~ll 204 (323)
-.....+.|++-|.+++|.|.-.|+.-+=-+.+... ++.. +|++++..++... ++.|..-++.++
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 344455556666666666666666553333333222 2222 5777777777653 334544444443
No 217
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=30.78 E-value=1.4e+02 Score=23.14 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH
Q psy18014 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL 177 (323)
Q Consensus 139 ~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~ 177 (323)
..++.+..++..+++|=+|.||.-|+--+--+.+.+|+.
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 357788899999999999999999998777777888887
No 218
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=30.57 E-value=2.3e+02 Score=21.20 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcc-CCChHHHHHHHHHHHhhhccChhHHHH-H---HHHHHHHhcCCChHHHHHHHH
Q psy18014 140 MIQAIERYMKQAIV-DRNSAVSSAAVVSIFHMTKHSPDLVKR-W---VNEVQEALNSENVMVQYHALG 202 (323)
Q Consensus 140 ~~~~l~~~v~~~L~-d~~~yVRk~A~~~~~kl~~~~p~~v~~-~---~~~l~~~l~d~~~~V~~~al~ 202 (323)
+=..+.+|....+. ..+..||...+-|+.++.....+-++. | +.-+.....+.+..++..|..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~ 81 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQ 81 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHH
Confidence 33455666666643 367899999999999999988887763 4 555666666766666665543
No 219
>KOG2032|consensus
Probab=30.45 E-value=3e+02 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH----HHHHH-HHHhcCCChHHHHHHHHHHH
Q psy18014 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR----WVNEV-QEALNSENVMVQYHALGLLY 205 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~----~~~~l-~~~l~d~~~~V~~~al~ll~ 205 (323)
...+...+-+-..|+++.+|..|+.|++..+...|+-+++ .++.+ ..+.++.|..|+.-|+..|.
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt 325 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLT 325 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3466667777788999999999999999999988988763 44444 44444556688887755443
No 220
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.48 E-value=2.7e+02 Score=26.28 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccCC--ChHHHHHHHHHHHhhhccChhH-HHHHHHHHHHHhcC
Q psy18014 141 IQAIERYMKQAIVDR--NSAVSSAAVVSIFHMTKHSPDL-VKRWVNEVQEALNS 191 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~--~~yVRk~A~~~~~kl~~~~p~~-v~~~~~~l~~~l~d 191 (323)
.....+.+.-.+.++ .+-||+.|+-++-++|..+|+. ...+++++.+.+.+
T Consensus 202 ~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 202 SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 455677788888888 8999999999999999999984 44567777766543
No 221
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.12 E-value=57 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.2
Q ss_pred hccCCChHHHHHHHHHHHhhhccChhH
Q psy18014 151 AIVDRNSAVSSAAVVSIFHMTKHSPDL 177 (323)
Q Consensus 151 ~L~d~~~yVRk~A~~~~~kl~~~~p~~ 177 (323)
.+.+.+||+|-.|++|+=.|...+++-
T Consensus 38 ~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 38 NIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred CCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 346788999999999999999988864
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.89 E-value=3.4e+02 Score=22.54 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhccC-----hhHH-HHHHHHHHHHhcC-CChHHHHHHHHHHHH
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-----PDLV-KRWVNEVQEALNS-ENVMVQYHALGLLYH 206 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-----p~~v-~~~~~~l~~~l~d-~~~~V~~~al~ll~~ 206 (323)
+..+.|++-|.+++|.|--.|+.-+--+.+.. .++. ++|++++..++.+ .++.|..-.+.++..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 44444555555555555555444333232222 2333 3688888888887 455565555554443
No 223
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=27.96 E-value=8.1e+02 Score=27.72 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=76.5
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHh-ccc--C-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHH---
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKEL-SNI--A-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAI--- 144 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~-~~~--~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l--- 144 (323)
++|..++.-+.+.+..+-...|..+... .+. . .+..-++|-..=-+.|++.-||..|++.|--+........-
T Consensus 503 dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~~s~~~~ 582 (1120)
T PF14228_consen 503 DLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEERFFSSSGSEK 582 (1120)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3777777777777766655555554444 222 1 12223445556668899999999999988876544433221
Q ss_pred HHHHHHhccCCChHHHHHHHHHHH-hhhccChhHHHHHHHHHHH
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIF-HMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~-kl~~~~p~~v~~~~~~l~~ 187 (323)
.......+.++.|.|-|.|..-+- +|-+.+||+...++.++..
T Consensus 583 ~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~ 626 (1120)
T PF14228_consen 583 SGDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQ 626 (1120)
T ss_pred ccceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHH
Confidence 334556788889999999887766 4567899988777776644
No 224
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.58 E-value=1.1e+02 Score=29.57 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=37.7
Q ss_pred HHHHHHhccCCChH-HHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 145 ERYMKQAIVDRNSA-VSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 145 ~~~v~~~L~d~~~y-VRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
++-+++.+..++|. .---||.-+.++.+..||... .....+.++++..|+-|-++|+..+..
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~ 425 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQT 425 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHH
Confidence 34444445555544 333345555666777777542 245567888888888888888765543
No 225
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.28 E-value=1.8e+02 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHcccCCCHH---h--HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 272 KSETVVYEAAHAIVNLRRTSAR---E--LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 272 ~~~aV~~ea~k~i~~l~~~~~~---~--~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
....+.++|++++-.+-+.... + ...++..+-..|.++++.+|-.|+.+|.
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4456788888888777654221 1 1466777888888999999999998764
No 226
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.30 E-value=5.2e+02 Score=23.82 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh
Q psy18014 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD 176 (323)
Q Consensus 139 ~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~ 176 (323)
+.+.-+.+++...+.|.++.+|-.++.++.++....|.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 45677899999999999999999999999999876654
No 227
>KOG0211|consensus
Probab=26.28 E-value=8.5e+02 Score=26.29 Aligned_cols=248 Identities=12% Similarity=0.104 Sum_probs=121.8
Q ss_pred CCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc--Ccc-hHhhhhhhhhhcCCCChHHHhHHH-------HHhhC
Q psy18014 65 LGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI--AED-VIIVTSSLTKDMTGKEDLYRAAAI-------RALCS 134 (323)
Q Consensus 65 ~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~--~~~-~lL~iNsl~kDl~~~N~~ir~lAL-------r~L~~ 134 (323)
+.+.-.+.+++.+-.++..++..++...=..+....+. .+. +=...--+..-+++..|.+|.+-. ...+.
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 33334445566666666667766666544444444321 111 111112223334455556665555 44555
Q ss_pred CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc-cChhHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHhc--
Q psy18014 135 ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK-HSPDLVK-RWVNEVQEALNSENVMVQYHALGLLYHIRKS-- 210 (323)
Q Consensus 135 i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~-~~p~~v~-~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~-- 210 (323)
++.....+.+.+.+...-.|.+--||.+..-.+..+.. .+-+... ++...+..-+.|....+.-+|..-+..+...
T Consensus 471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G 550 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG 550 (759)
T ss_pred ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC
Confidence 56666667777777776666655555554443333221 1212221 1222222223333334444443333333222
Q ss_pred ChhhHHHHHHHHhhccCCCh-H-HHHHHHHHHH---HHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHH
Q psy18014 211 DQLAVTKLVAKLTKFTMKSP-Y-ATCMLIRIVC---KLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285 (323)
Q Consensus 211 d~~~~~~lv~~L~~~~~~~~-~-~~~~llr~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~ 285 (323)
..+....+++.+.... .++ | .-..++.-+. ..+..+- ..+.++..+........+-|-+.++|.+-
T Consensus 551 ~~w~~~~~i~k~L~~~-~q~~y~~R~t~l~si~~la~v~g~ei--------~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMD-LQDNYLVRMTTLFSIHELAEVLGQEI--------TCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred cchhHHHhhHHHHHHh-cCcccchhhHHHHHHHHHHHHhccHH--------HHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 2344455555443210 111 2 1111111111 1111111 24677777777778889999999999987
Q ss_pred cccCC-CHHhH-hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 286 NLRRT-SAREL-APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 286 ~l~~~-~~~~~-~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.+... ....+ ......+..+.+..|.++||.|.-..
T Consensus 622 ~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 622 KILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 77421 23333 44555555555679999999997654
No 228
>KOG4413|consensus
Probab=25.66 E-value=6.3e+02 Score=24.60 Aligned_cols=182 Identities=15% Similarity=0.268 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC-----cchHhhhhh-hhh---hc-
Q psy18014 48 CTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA-----EDVIIVTSS-LTK---DM- 117 (323)
Q Consensus 48 ~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-----~~~lL~iNs-l~k---Dl- 117 (323)
|...+.|++..+. |..+ +..++++.-..+-.+|-.+|-+..--+..+.++. .++++++|. +.| ||
T Consensus 63 cVscLERLfkake-gahl----apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 63 CVSCLERLFKAKE-GAHL----APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred HHHHHHHHHhhcc-chhh----chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 7788888877654 5442 4567777777788899999988877766665443 245666663 443 44
Q ss_pred CCCChHHHhHHHHHhhCCCc-hhhHHHHHHH-------HHHhccCCChHHHHHHHHHHHhhhccChhHHHH-----HHHH
Q psy18014 118 TGKEDLYRAAAIRALCSITD-TTMIQAIERY-------MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-----WVNE 184 (323)
Q Consensus 118 ~~~N~~ir~lALr~L~~i~~-~~~~~~l~~~-------v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-----~~~~ 184 (323)
...|.-+--.|+.++.+|.. |.-.+.+++. .++.-..-+..+|-...--+.+++...|+.... +++.
T Consensus 138 ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 66788888889999888753 2222333221 111122234556666555577888888876531 4444
Q ss_pred H-HHHhcCCChHHHHHHHHHHHHHHhc--Ch-----hhHHHHHHHHhhccCCChHHHH
Q psy18014 185 V-QEALNSENVMVQYHALGLLYHIRKS--DQ-----LAVTKLVAKLTKFTMKSPYATC 234 (323)
Q Consensus 185 l-~~~l~d~~~~V~~~al~ll~~l~~~--d~-----~~~~~lv~~L~~~~~~~~~~~~ 234 (323)
+ .++-...|..|..+.+-+.+++... .+ ..+..++-....+.-.+||...
T Consensus 218 LeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf 275 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF 275 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH
Confidence 3 3344457888999998888877542 22 2223333333344456777654
No 229
>KOG1967|consensus
Probab=25.33 E-value=6.2e+02 Score=27.90 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=102.1
Q ss_pred ChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHh-hh--ccChhHHHHHHHHHHHHhcCCChHHH
Q psy18014 121 EDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFH-MT--KHSPDLVKRWVNEVQEALNSENVMVQ 197 (323)
Q Consensus 121 N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~k-l~--~~~p~~v~~~~~~l~~~l~d~~~~V~ 197 (323)
+|..-.+|.+.|..+..|+.-....+..-=...| ++-++|.+-.+..+ +| +...+++..+...+...-.+.-+ .
T Consensus 810 ~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D-~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~--~ 886 (1030)
T KOG1967|consen 810 HPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSD-SNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKH--N 886 (1030)
T ss_pred CcccchHHHHHHHhcCCccccchHHHhhHhhhcc-ChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchh--H
Confidence 5666678999999999988877766655444444 44455555555543 33 23455555555544421111111 1
Q ss_pred HHHHHHHHHHHhcChhh----HHHHHHHHh-hccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcC-
Q psy18014 198 YHALGLLYHIRKSDQLA----VTKLVAKLT-KFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRH- 271 (323)
Q Consensus 198 ~~al~ll~~l~~~d~~~----~~~lv~~L~-~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 271 (323)
|+ .++-|-+..-.... +..|.+-|. ....+++-.++.-++.+..++...+.. ++.....++..+-.+-+.
T Consensus 887 yl-~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL---~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 887 YL-EALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL---QTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred HH-HHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc---chHHHhHHHHHHHhcCCCC
Confidence 11 11112222211111 133333332 224667777778888776554433322 122334444433332222
Q ss_pred CC--hhHHHHHHHHHHcccC-CCH----HhHhhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 272 KS--ETVVYEAAHAIVNLRR-TSA----RELAPAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 272 ~~--~aV~~ea~k~i~~l~~-~~~----~~~~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
.| .+|..-|.+++-.++. .|+ ..+..++..+-.-|..+.+-+|--|.|+
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 22 3566667777777764 232 2346777777777888888888877765
No 230
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=25.06 E-value=8e+02 Score=25.56 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHH
Q psy18014 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNS-ENVMVQYHALGLLYHI 207 (323)
Q Consensus 137 ~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d-~~~~V~~~al~ll~~l 207 (323)
...+...+...+.-...++++.+|+.+.--+.++....|+-.+ ..-+.+++.+ ..+++...+++.+-+.
T Consensus 436 ~~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~r--f~~i~dlLe~c~~~~~k~~~I~~lKd~ 505 (633)
T PF08568_consen 436 SEVFMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETR--FKFIRDLLENCPFESLKASAIGWLKDE 505 (633)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhH--HHHHHHHHhcCCCHhHHHHHHHHHHHH
Confidence 3445556666666777889999999999888888888988662 3334444444 4568888888876554
No 231
>KOG2274|consensus
Probab=25.00 E-value=2.5e+02 Score=30.63 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLLYHIR 208 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~ 208 (323)
+.+++.+.+..+|+.+..|+--+...+ ||.-.+.++.+.+++.+.|..-.-.|+.++.++.
T Consensus 95 Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 95 LLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred HHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 334445666677777777666655433 6666666667777776666555555555554443
No 232
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=24.83 E-value=4.4e+02 Score=22.49 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=41.7
Q ss_pred hcCCCchhHHHHHHHHHHhcccC-cchH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC
Q psy18014 81 FQSKDVILRRMVYLGIKELSNIA-EDVI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD 154 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~~~-~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d 154 (323)
+.=+|....+=.|-.+..-.+.. ++++ |.. ... +++.||..|++.|....+.++..++..-| ++|..
T Consensus 55 v~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~----~~f--~~~~VR~yAV~~L~~~sd~eL~~yL~QLV-QaLKy 123 (166)
T cd00870 55 VNWSDEQEVKQALELMPKWAKIDIEDALELLS----PYF--TNPVVRKYAVSRLKLASDEELLLYLLQLV-QALKY 123 (166)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcC----ccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHh
Confidence 34445555555555565555543 3343 322 222 25899999999999999888888877754 44443
No 233
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.82 E-value=4e+02 Score=21.98 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=35.3
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 164 VVSIFHMTKHSPDLVKRWVNEVQEALN-SENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~~~~~l~~~l~-d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
++-+.-.+...++-.++.+..+..-+. ..||.|+..|+.++..+.++.+..+
T Consensus 22 ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~f 74 (141)
T cd03565 22 NMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRF 74 (141)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHH
Confidence 344444444444445566777777776 4689999999999988888766554
No 234
>KOG4535|consensus
Probab=24.26 E-value=7.9e+02 Score=25.24 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCChHHHHHHHHHHHhhhccChhHHH--HH---H--------HHHHH-HhcCCChHHHHHHHHHHHHHHhcChhhHHHHH
Q psy18014 154 DRNSAVSSAAVVSIFHMTKHSPDLVK--RW---V--------NEVQE-ALNSENVMVQYHALGLLYHIRKSDQLAVTKLV 219 (323)
Q Consensus 154 d~~~yVRk~A~~~~~kl~~~~p~~v~--~~---~--------~~l~~-~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv 219 (323)
|..+.||..|+.|...+...-|.-+- =| + +.+.. -+.|.||-.-..|+.++..+-.... .+....
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk-~fls~a 85 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK-QFLSVA 85 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH-HHHHHH
Confidence 44578999999888766544332210 01 1 12222 2557777777777766655544321 111111
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCC------HH
Q psy18014 220 AKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTS------AR 293 (323)
Q Consensus 220 ~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~------~~ 293 (323)
..+.. .-..||....--.+... ..-++-++. ...++-|+-+|+|++-.+-... ..
T Consensus 86 ~~~~~-~~ftpf~v~~a~si~~~---------------~r~l~~~l~---~e~~~~~~tq~~kcla~lv~~~p~~~l~~~ 146 (728)
T KOG4535|consen 86 EDTSD-HAFTPFSVMIACSIREL---------------HRCLLLALV---AESSSQTVTQIIKCLANLVSNAPYDRLKLS 146 (728)
T ss_pred hccCC-cCCCchHHHHHHHHHHH---------------HHHHHHHHH---HhcCchhHHHHHHHHHHHHhcCchHHHHHH
Confidence 12211 12345554211111000 011111222 3567778888999887774322 23
Q ss_pred hHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 294 ELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 294 ~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.+....+.++.++.++|++++-.+|..|
T Consensus 147 ~~~~~~~~ik~~i~~~d~~v~vs~l~~~ 174 (728)
T KOG4535|consen 147 LLTKVWNQIKPYIRHKDVNVRVSSLTLL 174 (728)
T ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence 5678899999999999999999998765
No 235
>KOG2038|consensus
Probab=24.03 E-value=3.6e+02 Score=29.09 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hcCCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHHHHHHHHHHhccCCCh
Q psy18014 81 FQSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQAIERYMKQAIVDRNS 157 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~~l~~~v~~~L~d~~~ 157 (323)
+.+++..-|.|..-|++.+.+ . .+-.|..|--=..++=+.++--||.++..+.. ||=-+.+...+.+.|.|+..
T Consensus 279 l~~~~~~~k~Ll~WyfE~~LK---~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqn 355 (988)
T KOG2038|consen 279 LTNKRLRDKILLMWYFEHELK---ILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQN 355 (988)
T ss_pred ccccccccceehHHHHHHHHH---HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcch
Q ss_pred HHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHhcChhhH--HHHHHHH
Q psy18014 158 AVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENV--MVQYHALGLLYHIRKSDQLAV--TKLVAKL 222 (323)
Q Consensus 158 yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~--~V~~~al~ll~~l~~~d~~~~--~~lv~~L 222 (323)
-+-.+|..-+..|...+|.+=--.+.++..++-..|. --+|+|+..|..++-.....- .+||...
T Consensus 356 KiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iY 424 (988)
T KOG2038|consen 356 KIASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIY 424 (988)
T ss_pred hhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHH
No 236
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.39 E-value=5.2e+02 Score=27.32 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=32.0
Q ss_pred hHHHhHHHHHhhCCCch------hhHH-HHHHH-HHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHH
Q psy18014 122 DLYRAAAIRALCSITDT------TMIQ-AIERY-MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEV 185 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~~------~~~~-~l~~~-v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l 185 (323)
+-.|--||..||.+... .+++ ++++. ++-+..|.++.|--.|+.|+.-|.+.-|..+..+++++
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~L 153 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDL 153 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 34556666666655432 1111 22222 22233456666666666666666666665554444433
No 237
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.01 E-value=1.4e+03 Score=27.52 Aligned_cols=246 Identities=11% Similarity=0.122 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHcC--CCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-----C---cchH-hhhhhhhh
Q psy18014 47 KCTHILTKILYLINQG--EQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-----A---EDVI-IVTSSLTK 115 (323)
Q Consensus 47 k~~~~l~kli~~~~~G--~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-----~---~~~l-L~iNsl~k 115 (323)
.+|+.+.+.+..|..+ ..+-+ =+..+|..+.-.+..++..+=+++|-.+..+... . .+.+ -+|+++.+
T Consensus 1198 eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~ 1276 (1780)
T PLN03076 1198 EIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIA 1276 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHH
Confidence 4457777777766654 22211 1345555554445566667777777766544211 1 2444 46777776
Q ss_pred hcCCC---Ch------HHHhHHHHHh----hC--------------------------CCc----hhhHHHHHHHHHHhc
Q psy18014 116 DMTGK---ED------LYRAAAIRAL----CS--------------------------ITD----TTMIQAIERYMKQAI 152 (323)
Q Consensus 116 Dl~~~---N~------~ir~lALr~L----~~--------------------------i~~----~~~~~~l~~~v~~~L 152 (323)
-.+.. |- +++..+-..+ .. +.. ..++-++...+.+..
T Consensus 1277 Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~ 1356 (1780)
T PLN03076 1277 FTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELS 1356 (1780)
T ss_pred HHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHh
Confidence 66433 22 2222211110 00 000 146777778888888
Q ss_pred cCCChHHHHHHHHHHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhc------ChhhHHHHHHHHhh
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKS------DQLAVTKLVAKLTK 224 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~------d~~~~~~lv~~L~~ 224 (323)
.|..+.||+.|+-.+.+++..+..... -|..-.... ++-- +..++.. +.+.-.. +..-..
T Consensus 1357 ~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~V--------LFPI---Fd~l~~~~~~~~~~~~~~~~-~~~~~~ 1424 (1780)
T PLN03076 1357 FDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESV--------LFPI---FDYVRHAIDPSGGDEPEGQG-VDGDQG 1424 (1780)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH--------HHHH---HHHHHHhhcccccccccccc-cccccc
Confidence 899999999999999988866654332 233322211 1111 1111110 0000000 000000
Q ss_pred ccCCChHH---HHHHHHHH----HHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccC-----CCH
Q psy18014 225 FTMKSPYA---TCMLIRIV----CKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR-----TSA 292 (323)
Q Consensus 225 ~~~~~~~~---~~~llr~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~-----~~~ 292 (323)
..-...|. ....++.+ ..++..=.. ....+++++..|....|..+.--++.++..+-. -+.
T Consensus 1425 ~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-------~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1425 ELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-------LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 00012243 11222222 222211111 267888899999999999888877777766621 135
Q ss_pred HhHhhHHHHHHHHhcCCChh
Q psy18014 293 RELAPAVSVLQLFCSSPKPV 312 (323)
Q Consensus 293 ~~~~~~~~~l~~~L~s~~~n 312 (323)
..+..++..+..+....-|.
T Consensus 1498 ~~W~~i~~~~~~lf~~T~p~ 1517 (1780)
T PLN03076 1498 EKWLEVVLSLKEAANATLPD 1517 (1780)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 66777777777776654443
No 238
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=21.95 E-value=1.9e+02 Score=28.86 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHhhhccChh---HHHH--HHHHHHHHhcCCChHHHHHHHHH
Q psy18014 144 IERYMKQAI-VDRNSAVSSAAVVSIFHMTKHSPD---LVKR--WVNEVQEALNSENVMVQYHALGL 203 (323)
Q Consensus 144 l~~~v~~~L-~d~~~yVRk~A~~~~~kl~~~~p~---~v~~--~~~~l~~~l~d~~~~V~~~al~l 203 (323)
+.+-+.+.| .+.+|-+---||.=++...+.+|+ ++++ ....+++++.+.|+.|.++|+-.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 419 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA 419 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 344455555 245666665566556667777663 5554 56678888888999999988744
No 239
>PF13730 HTH_36: Helix-turn-helix domain
Probab=21.82 E-value=82 Score=20.99 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcccCcchHhhhhhhhhhcCC
Q psy18014 89 RRMVYLGIKELSNIAEDVIIVTSSLTKDMTG 119 (323)
Q Consensus 89 Kkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~ 119 (323)
-+++|+++..++......+....+|.+++.-
T Consensus 7 ~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~ 37 (55)
T PF13730_consen 7 AKLVYLYLASYANKNGGCFPSQETLAKDLGV 37 (55)
T ss_pred HHHHHHHHHHhcCCCCCCCcCHHHHHHHHCc
Confidence 3688999999986554477778888888843
No 240
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.14 E-value=4.1e+02 Score=20.82 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhcc-CCChHHHHHHHHHHHhhhc---cChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 139 TMIQAIERYMKQAIV-DRNSAVSSAAVVSIFHMTK---HSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 139 ~~~~~l~~~v~~~L~-d~~~yVRk~A~~~~~kl~~---~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
+++..+.+.+.++|. .+.+..|=.|.+-+..+.. ..++.++.+++.+-......+. ...++..+..+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l 72 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVL 72 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHH
Confidence 567888999999999 7889999998888887764 4567777777766655444443 23444444333
No 241
>KOG1988|consensus
Probab=20.96 E-value=1.1e+03 Score=25.80 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=97.6
Q ss_pred hhHHHHHHHHH-HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCc
Q psy18014 26 LDKTAVLQEAR-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAE 104 (323)
Q Consensus 26 ~ek~~i~qe~~-~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~ 104 (323)
.+-+++.+|+. .++ ++.-..+| +++.++..+--.| +|+ ...-..|+.+...|..-|.-+|=-+-=+...-++.-+
T Consensus 20 ~s~~a~~~~ldkGlr-~~~t~eqp-eavvr~~RLFek~-Pfp-ifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln 95 (970)
T KOG1988|consen 20 NSVNAVLMELDKGLR-SGKTSEQP-EAVVRFPRLFEKY-PFP-IFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLN 95 (970)
T ss_pred cchhHHHHHHhhccc-ccccccch-HHHHHHHHHHhhC-Cch-hhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccch
Confidence 33557777764 333 34566788 8888988888775 343 3344567777777886666555444444444344333
Q ss_pred chHhhhhhhhhhc---CCCChHHHhHHHHHhhCCCch-hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH
Q psy18014 105 DVIIVTSSLTKDM---TGKEDLYRAAAIRALCSITDT-TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR 180 (323)
Q Consensus 105 ~~lL~iNsl~kDl---~~~N~~ir~lALr~L~~i~~~-~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~ 180 (323)
.++=.--++++-. .+.+|+-|+++||.++....- .=.+.....|.+.+.+++.-=-..|+.+..+-...+.+-...
T Consensus 96 ~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~s 175 (970)
T KOG1988|consen 96 KVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFACS 175 (970)
T ss_pred hhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHHH
Confidence 4333333344322 455789999999999987541 112345566788886666544455566665555555555555
Q ss_pred HHHHHHHHhcCC
Q psy18014 181 WVNEVQEALNSE 192 (323)
Q Consensus 181 ~~~~l~~~l~d~ 192 (323)
....+.+++.-.
T Consensus 176 i~gkis~mIef~ 187 (970)
T KOG1988|consen 176 ICGKISDMIEFL 187 (970)
T ss_pred HHHHHHHHhhcc
Confidence 566666666543
No 242
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=3.9e+02 Score=28.78 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=61.7
Q ss_pred ChHHHhHHHHHhhCCCc--------hh-hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh--hHHHHHHHHHHHHh
Q psy18014 121 EDLYRAAAIRALCSITD--------TT-MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP--DLVKRWVNEVQEAL 189 (323)
Q Consensus 121 N~~ir~lALr~L~~i~~--------~~-~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p--~~v~~~~~~l~~~l 189 (323)
|+.-.--|||.+++|.+ .. |-..++++|...+.++.-|.+..||--+.++-...+ .+.-...+....++
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45556679999999987 22 334456888889999999999999988877743334 45556777777788
Q ss_pred cCCC-hHHHHHHHHHHHHHH
Q psy18014 190 NSEN-VMVQYHALGLLYHIR 208 (323)
Q Consensus 190 ~d~~-~~V~~~al~ll~~l~ 208 (323)
.+++ |.-+-+|+|+-.-+.
T Consensus 509 ~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 509 KNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred hcCCcchhhhHHHHHHHHHh
Confidence 7755 344555677655444
No 243
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=20.54 E-value=3.5e+02 Score=27.85 Aligned_cols=72 Identities=7% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHhHHHHHhhCCCchhh-HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh--h-HHHHHHHHHHHHhcCCChH
Q psy18014 123 LYRAAAIRALCSITDTTM-IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP--D-LVKRWVNEVQEALNSENVM 195 (323)
Q Consensus 123 ~ir~lALr~L~~i~~~~~-~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p--~-~v~~~~~~l~~~l~d~~~~ 195 (323)
-+=+-++.++....++.+ ...++.-+-++..|.+|-||..|+-++-++.+..| . ++..|...+-+ ..|+.+.
T Consensus 450 ~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~ 525 (552)
T PF14222_consen 450 DLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPS 525 (552)
T ss_pred HHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCcc
Confidence 334567788888877765 57888899999999999999999999988885543 3 33345554444 4454443
No 244
>PHA02861 uncharacterized protein; Provisional
Probab=20.50 E-value=5.2e+02 Score=21.70 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=58.3
Q ss_pred CCchhHHHHHHHHHHhcc---c-CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHH
Q psy18014 84 KDVILRRMVYLGIKELSN---I-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAV 159 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~---~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yV 159 (323)
+|...=-.=|+||..++= . ...++.+--++++|-. .+-|--+|.+.+-.+.+=++.....|+-.+.+. .|.
T Consensus 17 DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~----~VFg~~lr~fVk~~~~~~v~~~~~~I~~~l~~e-n~i 91 (149)
T PHA02861 17 DDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSE----IVFGENFRHIVKNFKTLGIEDTVQAVKCFTVGK-NAL 91 (149)
T ss_pred chHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHH----HHHHHHHHHHHHhCCccchHhHHHHHHHHhccc-HHH
Confidence 445555567999999952 2 2336778889999975 788999999988888888999999888888886 444
Q ss_pred HH-HHHHHH
Q psy18014 160 SS-AAVVSI 167 (323)
Q Consensus 160 Rk-~A~~~~ 167 (323)
|- .|++++
T Consensus 92 rE~cAiIGL 100 (149)
T PHA02861 92 RESVSMVDL 100 (149)
T ss_pred HHHHHHHHH
Confidence 44 444443
No 245
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=20.36 E-value=2.7e+02 Score=23.57 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHH
Q psy18014 128 AIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIF 168 (323)
Q Consensus 128 ALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~ 168 (323)
|+.=|.++. +++-+++.--+++++-+++...|+.|+-|.+
T Consensus 118 Al~PLi~~s-~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 118 ALLPLIKFS-PSLRDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 555566664 7899999999999999999999999998864
Done!