Query psy18014
Match_columns 323
No_of_seqs 109 out of 744
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_B Coatomer subunit gamma; 100.0 2.4E-75 8.4E-80 555.8 22.1 299 18-323 14-313 (355)
2 2vgl_A Adaptor protein complex 100.0 1.7E-50 5.8E-55 412.4 20.7 301 8-322 11-354 (621)
3 1w63_A Adapter-related protein 100.0 8.5E-47 2.9E-51 384.8 23.7 300 7-322 9-338 (618)
4 2vgl_B AP-2 complex subunit be 100.0 3.1E-43 1.1E-47 356.4 23.8 286 20-322 3-307 (591)
5 3ltm_A Alpha-REP4; protein eng 99.1 1.4E-08 5E-13 87.8 19.1 117 75-206 22-138 (211)
6 3tjz_B Coatomer subunit gamma; 99.0 5.1E-09 1.7E-13 99.4 16.2 297 10-323 48-350 (355)
7 3ltj_A Alpharep-4; protein eng 99.0 5E-08 1.7E-12 83.7 19.5 54 263-322 141-194 (201)
8 1oyz_A Hypothetical protein YI 99.0 6.9E-08 2.3E-12 87.2 20.5 129 73-207 55-186 (280)
9 1oyz_A Hypothetical protein YI 99.0 7.8E-08 2.7E-12 86.8 20.6 219 74-321 25-245 (280)
10 4fdd_A Transportin-1; heat rep 99.0 6.5E-07 2.2E-11 93.4 30.3 284 25-322 85-425 (852)
11 4hxt_A De novo protein OR329; 98.9 6.1E-07 2.1E-11 78.6 23.5 210 75-322 5-237 (252)
12 3ltm_A Alpha-REP4; protein eng 98.8 5.5E-07 1.9E-11 77.7 21.0 179 110-322 21-199 (211)
13 4db8_A Armadillo-repeat protei 98.8 4.8E-07 1.7E-11 79.8 20.6 214 71-322 11-247 (252)
14 3ltj_A Alpharep-4; protein eng 98.8 7.6E-07 2.6E-11 76.2 20.9 185 71-288 13-197 (201)
15 2vgl_B AP-2 complex subunit be 98.8 9.7E-07 3.3E-11 88.8 24.3 240 76-317 90-410 (591)
16 1w63_A Adapter-related protein 98.8 3.2E-08 1.1E-12 100.4 13.3 236 76-321 111-374 (618)
17 2jdq_A Importin alpha-1 subuni 98.8 2.6E-06 8.8E-11 81.2 25.1 246 72-322 64-343 (450)
18 1wa5_B Importin alpha subunit; 98.8 6E-07 2.1E-11 88.5 21.2 274 44-322 100-408 (530)
19 4b8j_A Importin subunit alpha- 98.8 3.5E-06 1.2E-10 82.8 26.5 274 44-322 87-396 (528)
20 1wa5_B Importin alpha subunit; 98.7 3.1E-06 1.1E-10 83.4 24.2 246 72-322 87-366 (530)
21 1ibr_B P95, importin beta-1 su 98.7 9.4E-06 3.2E-10 77.3 25.6 283 26-322 86-433 (462)
22 4db6_A Armadillo repeat protei 98.7 4.6E-06 1.6E-10 71.5 20.5 179 72-288 12-208 (210)
23 2jdq_A Importin alpha-1 subuni 98.6 9.3E-06 3.2E-10 77.3 24.1 244 74-322 22-301 (450)
24 1b3u_A Protein (protein phosph 98.6 1.4E-06 4.8E-11 85.8 18.6 212 110-322 166-388 (588)
25 4hxt_A De novo protein OR329; 98.6 9.3E-06 3.2E-10 70.9 20.5 175 110-322 4-195 (252)
26 4b8j_A Importin subunit alpha- 98.6 1.8E-05 6.2E-10 77.7 24.7 245 73-322 75-354 (528)
27 2bpt_A Importin beta-1 subunit 98.5 2.9E-05 9.8E-10 80.1 26.4 283 27-322 92-436 (861)
28 1b3u_A Protein (protein phosph 98.5 3E-06 1E-10 83.4 18.1 136 72-207 281-429 (588)
29 4db6_A Armadillo repeat protei 98.5 1.8E-05 6.2E-10 67.7 20.1 173 112-322 16-205 (210)
30 4db8_A Armadillo-repeat protei 98.5 1.2E-05 4E-10 70.8 18.7 179 72-288 54-250 (252)
31 1te4_A Conserved protein MTH18 98.4 2.6E-07 8.8E-12 74.5 5.3 114 75-204 15-128 (131)
32 1qgr_A Protein (importin beta 98.3 0.00029 9.8E-09 72.7 28.0 284 25-322 85-433 (876)
33 3tpo_A Importin subunit alpha- 98.3 0.00026 8.9E-09 69.9 26.4 265 53-322 141-445 (529)
34 3tpo_A Importin subunit alpha- 98.3 0.00088 3E-08 66.0 29.8 270 47-321 92-401 (529)
35 3ul1_B Importin subunit alpha- 98.3 0.00056 1.9E-08 67.2 28.0 283 32-321 59-382 (510)
36 3ul1_B Importin subunit alpha- 98.3 0.00078 2.7E-08 66.2 28.4 268 53-322 122-426 (510)
37 2bpt_A Importin beta-1 subunit 98.3 0.00014 4.9E-09 74.8 23.4 249 70-322 367-664 (861)
38 2vgl_A Adaptor protein complex 98.2 6.5E-05 2.2E-09 76.1 19.5 98 77-176 116-220 (621)
39 1u6g_C TIP120 protein, CAND1; 98.2 5.1E-05 1.7E-09 82.1 19.6 242 74-321 8-279 (1230)
40 4fdd_A Transportin-1; heat rep 98.2 0.00019 6.6E-09 74.6 21.7 242 76-321 17-280 (852)
41 2qk2_A LP04448P; mini spindles 98.1 6.9E-05 2.3E-09 66.2 15.3 128 77-206 20-159 (242)
42 2qk2_A LP04448P; mini spindles 98.1 0.00014 4.9E-09 64.0 17.2 165 44-208 28-204 (242)
43 1jdh_A Beta-catenin; beta-cate 98.0 0.00046 1.6E-08 67.0 19.4 246 72-322 17-291 (529)
44 1te4_A Conserved protein MTH18 98.0 1.1E-05 3.7E-10 64.8 6.3 111 110-236 14-124 (131)
45 3now_A UNC-45 protein, SD10334 98.0 0.0014 4.9E-08 68.1 23.6 287 30-322 377-733 (810)
46 2z6g_A B-catenin; FULL-length, 97.9 7.6E-05 2.6E-09 77.5 13.5 174 109-321 116-300 (780)
47 1xqr_A HSPBP1 protein; armadil 97.9 0.00021 7.3E-09 65.8 14.5 139 72-210 81-239 (296)
48 1qgr_A Protein (importin beta 97.9 0.0024 8.1E-08 65.8 23.6 135 72-207 321-477 (876)
49 1jdh_A Beta-catenin; beta-cate 97.8 0.0053 1.8E-07 59.4 23.0 268 50-322 35-335 (529)
50 2z6g_A B-catenin; FULL-length, 97.7 0.0013 4.3E-08 68.3 18.8 244 71-322 149-424 (780)
51 3b2a_A TON_1937, putative unch 97.7 0.0022 7.5E-08 56.9 17.0 171 142-321 32-213 (265)
52 2qk1_A Protein STU2; STU2P, XM 97.7 0.00087 3E-08 59.9 14.9 172 112-321 20-215 (249)
53 3now_A UNC-45 protein, SD10334 97.7 0.0016 5.5E-08 67.8 18.7 257 50-322 266-561 (810)
54 2db0_A 253AA long hypothetical 97.7 0.011 3.7E-07 50.8 20.4 176 123-305 47-226 (253)
55 2z6h_A Catenin beta-1, beta-ca 97.7 0.0021 7.3E-08 64.8 18.9 245 72-321 14-287 (644)
56 1u6g_C TIP120 protein, CAND1; 97.7 0.0018 6.2E-08 70.0 19.1 195 110-307 8-223 (1230)
57 2z6h_A Catenin beta-1, beta-ca 97.6 0.016 5.6E-07 58.2 24.3 268 50-322 32-332 (644)
58 3b2a_A TON_1937, putative unch 97.4 0.0023 7.9E-08 56.8 12.3 174 33-208 36-217 (265)
59 1ibr_B P95, importin beta-1 su 97.3 0.011 3.6E-07 55.9 17.4 238 77-321 6-283 (462)
60 2qk1_A Protein STU2; STU2P, XM 97.3 0.0019 6.4E-08 57.8 11.3 164 44-208 29-219 (249)
61 1xqr_A HSPBP1 protein; armadil 97.2 0.0074 2.5E-07 55.4 15.1 137 147-321 85-233 (296)
62 4ady_A RPN2, 26S proteasome re 96.9 0.26 9E-06 52.0 24.6 226 73-318 473-711 (963)
63 3nmw_A APC variant protein; AR 96.9 0.15 5E-06 47.8 20.4 200 119-321 95-329 (354)
64 2db0_A 253AA long hypothetical 96.8 0.12 4.2E-06 44.3 17.4 173 142-321 31-205 (253)
65 4ady_A RPN2, 26S proteasome re 96.8 0.066 2.3E-06 56.4 19.0 57 263-321 615-671 (963)
66 3nmz_A APC variant protein; pr 96.7 0.15 5.1E-06 49.6 19.3 200 120-322 212-446 (458)
67 3l6x_A Catenin delta-1; cateni 96.6 0.58 2E-05 46.8 23.8 269 50-322 27-380 (584)
68 1xm9_A Plakophilin 1; armadill 96.5 0.34 1.1E-05 46.6 21.0 135 76-210 6-173 (457)
69 1xm9_A Plakophilin 1; armadill 96.5 0.62 2.1E-05 44.7 23.6 248 72-322 44-402 (457)
70 1wa5_C Importin alpha RE-expor 96.3 0.44 1.5E-05 50.1 22.0 90 83-172 416-525 (960)
71 4ffb_C Protein STU2; tubulin f 96.2 0.024 8.1E-07 50.9 10.1 104 72-175 102-215 (278)
72 3nmw_A APC variant protein; AR 96.2 0.37 1.3E-05 45.0 18.4 203 117-322 41-288 (354)
73 4ffb_C Protein STU2; tubulin f 96.0 0.12 4E-06 46.2 13.6 166 148-321 14-207 (278)
74 2of3_A ZYG-9; multifunctional 95.7 0.043 1.5E-06 49.6 9.3 115 105-222 129-249 (266)
75 3nmz_A APC variant protein; pr 95.6 0.59 2E-05 45.3 17.5 28 262-289 423-450 (458)
76 1wa5_C Importin alpha RE-expor 95.4 0.43 1.5E-05 50.2 17.0 124 86-209 375-525 (960)
77 3opb_A SWI5-dependent HO expre 95.0 0.33 1.1E-05 50.1 14.1 180 109-321 458-678 (778)
78 2of3_A ZYG-9; multifunctional 94.7 0.041 1.4E-06 49.7 5.8 135 46-182 105-246 (266)
79 3gs3_A Symplekin, LD45768P; he 94.7 1.3 4.4E-05 39.6 15.6 138 30-206 16-170 (257)
80 3grl_A General vesicular trans 94.5 1.6 5.4E-05 44.1 17.2 215 79-310 29-295 (651)
81 3l6x_A Catenin delta-1; cateni 93.8 6 0.00021 39.4 27.1 294 20-322 42-428 (584)
82 3gs3_A Symplekin, LD45768P; he 93.7 3.4 0.00012 36.8 16.3 79 124-202 31-112 (257)
83 2iw3_A Elongation factor 3A; a 93.1 8.3 0.00028 40.9 20.4 164 143-314 95-268 (986)
84 3tt9_A Plakophilin-2; cell adh 92.9 0.96 3.3E-05 39.7 11.2 106 107-212 7-127 (233)
85 3l9t_A Putative uncharacterize 92.8 0.95 3.3E-05 40.0 10.8 134 78-222 77-220 (240)
86 3opb_A SWI5-dependent HO expre 92.5 4.7 0.00016 41.6 17.1 189 122-322 308-526 (778)
87 3o2t_A Symplekin; heat repeat, 92.3 1.8 6.3E-05 40.9 12.9 94 104-201 25-121 (386)
88 3grl_A General vesicular trans 92.0 11 0.00039 37.9 23.2 308 3-321 16-389 (651)
89 3o2t_A Symplekin; heat repeat, 91.7 4.9 0.00017 38.0 15.1 139 29-206 25-180 (386)
90 3oc3_A Helicase MOT1, MOT1; re 90.7 5.3 0.00018 40.0 14.4 166 107-320 262-430 (800)
91 1lsh_A Lipovitellin (LV-1N, LV 88.6 1.2 4.2E-05 47.6 9.1 120 84-204 407-538 (1056)
92 3l9t_A Putative uncharacterize 88.6 12 0.00042 32.9 14.7 135 58-201 23-160 (240)
93 2b6c_A Hypothetical protein EF 88.5 1.2 4E-05 38.7 7.4 143 78-233 61-208 (220)
94 2x19_B Importin-13; nuclear tr 88.1 24 0.00081 36.5 18.3 119 81-207 34-173 (963)
95 1t06_A Hypothetical protein; s 87.0 2.3 7.9E-05 37.2 8.4 73 116-188 116-196 (235)
96 3jxy_A Alkylpurine DNA glycosy 86.9 1.8 6E-05 37.8 7.6 181 42-240 37-222 (232)
97 3u0r_A Apoptosis inhibitor 5; 86.6 11 0.00038 36.6 13.5 113 74-187 31-145 (507)
98 4gmo_A Putative uncharacterize 84.8 5.9 0.0002 40.0 11.3 76 77-152 39-128 (684)
99 2x1g_F Cadmus; transport prote 83.7 44 0.0015 34.6 19.9 121 120-244 476-614 (971)
100 3gjx_A Exportin-1; transport, 82.3 34 0.0011 36.6 16.2 106 64-172 20-141 (1073)
101 2x19_B Importin-13; nuclear tr 82.3 18 0.0006 37.5 14.0 107 82-191 459-579 (963)
102 3ibv_A Exportin-T; karyopherin 81.8 4.8 0.00016 42.6 9.5 91 122-212 457-569 (980)
103 3m1i_C Exportin-1; heat repeat 80.8 20 0.00068 37.9 13.9 101 110-210 453-570 (1049)
104 4hat_C Exportin-1; heat repeat 80.7 33 0.0011 36.4 15.5 119 82-204 26-161 (1023)
105 4gmo_A Putative uncharacterize 80.4 11 0.00039 37.9 11.4 55 117-171 43-104 (684)
106 2x1g_F Cadmus; transport prote 80.4 11 0.00036 39.3 11.5 104 84-191 476-595 (971)
107 4hat_C Exportin-1; heat repeat 78.8 25 0.00085 37.4 13.8 102 108-209 451-569 (1023)
108 3tt9_A Plakophilin-2; cell adh 78.4 33 0.0011 29.7 19.9 67 145-211 10-83 (233)
109 3ibv_A Exportin-T; karyopherin 78.4 71 0.0024 33.6 19.2 103 82-185 18-137 (980)
110 3dad_A FH1/FH2 domain-containi 77.5 44 0.0015 30.8 15.9 58 150-207 125-187 (339)
111 3ldz_A STAM-1, signal transduc 75.2 29 0.00099 27.5 11.0 53 163-215 25-77 (140)
112 3m1i_C Exportin-1; heat repeat 73.7 16 0.00055 38.5 10.7 104 77-183 21-145 (1049)
113 1x5b_A Signal transducing adap 66.8 44 0.0015 27.2 9.7 52 164-215 36-87 (163)
114 1elk_A Target of MYB1; superhe 65.5 33 0.0011 27.7 8.7 52 164-215 37-89 (157)
115 3u0r_A Apoptosis inhibitor 5; 65.4 1E+02 0.0035 29.9 21.9 115 122-241 42-159 (507)
116 3a6p_A Exportin-5; exportin-5, 64.4 40 0.0014 36.4 11.4 117 84-207 25-160 (1204)
117 1lrv_A LRV, leucine-rich repea 64.1 5.4 0.00019 35.1 3.8 40 268-321 202-241 (244)
118 2b6c_A Hypothetical protein EF 63.4 59 0.002 27.6 10.4 70 113-182 129-198 (220)
119 3gjx_A Exportin-1; transport, 63.1 72 0.0025 34.1 12.9 85 126-210 500-596 (1073)
120 2iw3_A Elongation factor 3A; a 61.1 61 0.0021 34.3 11.7 138 69-208 172-326 (986)
121 3zyq_A Hepatocyte growth facto 60.4 51 0.0017 28.3 9.4 53 163-215 28-80 (226)
122 1lsh_A Lipovitellin (LV-1N, LV 59.6 1.8E+02 0.0062 30.8 23.6 169 136-316 388-585 (1056)
123 1mhq_A ADP-ribosylation factor 58.8 33 0.0011 27.5 7.4 53 163-215 21-73 (148)
124 1dvp_A HRS, hepatocyte growth 58.8 81 0.0028 26.7 10.4 52 164-215 26-77 (220)
125 1juq_A ADP-ribosylation factor 58.3 35 0.0012 28.1 7.7 54 162-215 32-85 (171)
126 3g2s_A C-terminal fragment of 58.2 39 0.0013 27.2 7.7 53 163-215 31-83 (149)
127 1lrv_A LRV, leucine-rich repea 57.8 11 0.00036 33.2 4.6 66 112-201 150-215 (244)
128 1vsy_5 Proteasome activator BL 55.3 6.4 0.00022 41.9 3.1 107 81-189 769-892 (997)
129 3zyq_A Hepatocyte growth facto 54.8 59 0.002 27.9 8.9 59 104-165 41-111 (226)
130 3dad_A FH1/FH2 domain-containi 50.3 1.5E+02 0.0053 27.2 15.6 114 110-223 162-302 (339)
131 3jxy_A Alkylpurine DNA glycosy 46.6 1.3E+02 0.0044 25.6 9.8 68 117-184 140-207 (232)
132 1vdy_A Hypothetical protein (R 44.3 58 0.002 26.0 6.5 40 139-178 45-84 (140)
133 3g2s_A C-terminal fragment of 42.9 42 0.0014 27.0 5.6 58 105-166 45-120 (149)
134 1dvp_A HRS, hepatocyte growth 38.6 96 0.0033 26.2 7.6 57 105-164 39-107 (220)
135 1t06_A Hypothetical protein; s 33.5 2.2E+02 0.0077 24.2 10.1 76 145-220 110-191 (235)
136 2i9c_A Hypothetical protein RP 29.2 34 0.0012 26.8 2.7 37 148-187 62-98 (123)
137 3ldz_A STAM-1, signal transduc 29.0 2.1E+02 0.007 22.4 8.0 25 179-203 84-108 (140)
138 1ho8_A Vacuolar ATP synthase s 28.5 92 0.0031 30.1 6.2 52 155-206 417-473 (480)
139 3a6p_A Exportin-5; exportin-5, 27.3 81 0.0028 34.0 6.2 85 120-204 544-655 (1204)
140 1vsy_4 Proteasome activator BL 24.4 2.4E+02 0.0081 29.0 8.8 54 138-191 334-391 (799)
141 2bcx_B Ryanodine receptor 1; E 23.9 43 0.0015 19.5 1.8 16 158-173 13-28 (30)
142 1ho8_A Vacuolar ATP synthase s 23.5 44 0.0015 32.3 2.9 28 146-173 450-477 (480)
143 3rru_A TOM1L1 protein; structu 21.7 2.8E+02 0.0097 22.0 7.1 53 163-215 36-89 (152)
144 1x5b_A Signal transducing adap 20.8 3.3E+02 0.011 21.8 8.5 26 179-204 94-120 (163)
145 1upk_A MO25 protein; transfera 20.2 5E+02 0.017 23.7 10.6 107 141-263 207-321 (341)
No 1
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=2.4e-75 Score=555.83 Aligned_cols=299 Identities=71% Similarity=1.079 Sum_probs=260.0
Q ss_pred cCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHH
Q psy18014 18 RTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIK 97 (323)
Q Consensus 18 ~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~ 97 (323)
++.+||.+.||++++||+|.|+++|.|++||+++|+|+||+|++|++||+.|++++||+|+|+|+|+|+++|||||+||+
T Consensus 14 ~~~~p~~~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~ 93 (355)
T 3tjz_B 14 GGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIK 93 (355)
T ss_dssp ------CCCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHH
T ss_pred cccCccccchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH
Q psy18014 98 ELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL 177 (323)
Q Consensus 98 ~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~ 177 (323)
.|++.+++++|+||+|+||++|+||++||+|||+||+|++++|++++++++++++.|++|||||+|++|++|+++.+||+
T Consensus 94 ~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 94 EMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp HHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred HhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh-hcccCCCCC
Q psy18014 178 VKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQ-NAASGDTNW 256 (323)
Q Consensus 178 v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~-~~~~~~~~~ 256 (323)
+++|+++++++++|+||+|++||++++++++++|+.++.+++.++...+..+||+||.+||++..+.+.+ |+
T Consensus 174 v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------- 246 (355)
T 3tjz_B 174 VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------- 246 (355)
T ss_dssp HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-------
Confidence 9999999999999999999999999999999999999999999998877889999999999998876665 43
Q ss_pred CchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhcC
Q psy18014 257 SNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323 (323)
Q Consensus 257 ~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~~ 323 (323)
+.+.+++++.++|+|.|+||+|||+|+|+.+++.+..++.++++.+++||+++|||+||+|||++++
T Consensus 247 ~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 247 RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ----------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 3799999999999999999999999999999886678889999999999999999999999999874
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.7e-50 Score=412.42 Aligned_cols=301 Identities=19% Similarity=0.329 Sum_probs=258.3
Q ss_pred chHHHHhhhhcCCCCCchhhHHHHHHH----HHHcc-CCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhc
Q psy18014 8 APIQQLLRYKRTGNPFQNLDKTAVLQE----ARTFN-DTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ 82 (323)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ek~~i~qe----~~~f~-~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~ 82 (323)
+.++.++++.+..+. ...|+..+-+| ++.|+ +++.+.++|+++++|+||+|++|+| ++++|++++++++
T Consensus 11 ~~l~~~I~~ir~~~~-~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d-----~s~~~~~vvkl~~ 84 (621)
T 2vgl_A 11 RGLAVFISDIRNCKS-KEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD-----IDFGHMEAVNLLS 84 (621)
T ss_dssp HHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC-----CCSCHHHHHHGGG
T ss_pred hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC-----CchhHHHHHHHhc
Confidence 568899999988864 44555555556 35888 5567888889999999999999997 7899999999999
Q ss_pred CCCchhHHHHHHHHHHhcccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhc--cCCChHH
Q psy18014 83 SKDVILRRMVYLGIKELSNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAI--VDRNSAV 159 (323)
Q Consensus 83 s~d~~lKkl~Ylyl~~~~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L--~d~~~yV 159 (323)
|+|+++||+||+|+..+++.. |.++|+||+|+||++|+||++||+|||+||+|+.++|++++.++|++++ .|++|||
T Consensus 85 s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~V 164 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSV 164 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999999999999875 4488999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhhccChhHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH----HHHHHHHhh---------
Q psy18014 160 SSAAVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV----TKLVAKLTK--------- 224 (323)
Q Consensus 160 Rk~A~~~~~kl~~~~p~~v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~----~~lv~~L~~--------- 224 (323)
||+|++|++|+|+.+|+.++ .|++.+.+++.|.||+|+++|+++++++...++..+ .++++.|..
T Consensus 165 RK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 244 (621)
T 2vgl_A 165 KQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDL 244 (621)
T ss_dssp HHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999998 899999999999999999999999999998887643 334443321
Q ss_pred -----ccCCChHHHHHHHHHHHHHhhh-hhcccCCCCCCchhHHHHHHHHh------------cCCCh--hHHHHHHHHH
Q psy18014 225 -----FTMKSPYATCMLIRIVCKLIED-QNAASGDTNWSNSPLFDYLETCL------------RHKSE--TVVYEAAHAI 284 (323)
Q Consensus 225 -----~~~~~~~~~~~llr~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L------------~~~~~--aV~~ea~k~i 284 (323)
+++++||+|+.+|+++..+.+. +|+. .+.+.+++..++ +|.|. ||+|||+++|
T Consensus 245 ~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~-------~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i 317 (621)
T 2vgl_A 245 QDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV-------RGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 317 (621)
T ss_dssp STTEETTEESHHHHHHHHHHGGGSSSCSSHHH-------HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCchHHHHHHHHHHHhCCCCCHHH-------HHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHH
Confidence 1234899999999999877542 2332 456667666655 33344 9999999999
Q ss_pred HcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 285 VNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 285 ~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+++.. .+.++..+++.|+.||+++++|+||+||+.++
T Consensus 318 ~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~ 354 (621)
T 2vgl_A 318 IHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMC 354 (621)
T ss_dssp HHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 99986 57889999999999999999999999999886
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=8.5e-47 Score=384.75 Aligned_cols=300 Identities=19% Similarity=0.329 Sum_probs=259.6
Q ss_pred cchHHHHhhhhcCCCCCchhhHHHHHHHHH----HccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhc
Q psy18014 7 KAPIQQLLRYKRTGNPFQNLDKTAVLQEAR----TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ek~~i~qe~~----~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~ 82 (323)
...++.++|+.+..+. ...|+..+.+|++ .|++.+ +.+|| ++|+|+||+|++|+| ++++|++++++++
T Consensus 9 ~~~l~~~i~~ir~~~~-~~~e~~~i~~e~~~ir~~l~~~~-~~~k~-~~l~kli~~~~~G~d-----~~~~~~~vik~~~ 80 (618)
T 1w63_A 9 PIRLRELIRTIRTART-QAEEREMIQKECAAIRSSFREED-NTYRC-RNVAKLLYMHMLGYP-----AHFGQLECLKLIA 80 (618)
T ss_dssp CCCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHHHTTTC-TTTHH-HHHHHHHHHHHTTCC-----CGGGHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHhhCCC-HHHHH-HHHHHHHHHHHcCCC-----CcchHHHHHHHHc
Confidence 3569999999998865 6678888888853 787764 44555 899999999999998 7899999999999
Q ss_pred CCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHH
Q psy18014 83 SKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSS 161 (323)
Q Consensus 83 s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk 161 (323)
|+|+++||+||+|+..+++..++ ++++||+|+||++|+||++||+|||+||+|+.+++++++.+.|.+++.|++|||||
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk 160 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRK 160 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999987666 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh---hHHH----HHHHHhh----------
Q psy18014 162 AAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL---AVTK----LVAKLTK---------- 224 (323)
Q Consensus 162 ~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~---~~~~----lv~~L~~---------- 224 (323)
+|++|++++++.+|+.++.|++.+.+++.|+||+|+++|+.++.++...++. .+.+ ++..|..
T Consensus 161 ~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~ 240 (618)
T 1w63_A 161 KAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEH 240 (618)
T ss_dssp HHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999999999999876543 2223 3333321
Q ss_pred --ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh------cCCChhHHHHHHHHHHcccCCCHHhHh
Q psy18014 225 --FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL------RHKSETVVYEAAHAIVNLRRTSARELA 296 (323)
Q Consensus 225 --~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L------~~~~~aV~~ea~k~i~~l~~~~~~~~~ 296 (323)
.+.++||+|+.+++++..+...+|+. ...+.++|..++ ++.+++|++||+++++.+.. .+.+..
T Consensus 241 ~~~~~~~~~~q~~il~~L~~l~~~~~~~-------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~ 312 (618)
T 1w63_A 241 DVSGISDPFLQVRILRLLRILGRNDDDS-------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV 312 (618)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHTTTCHHH-------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH
Confidence 23679999999999999886655543 456667777764 45678999999999999976 467778
Q ss_pred hHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 297 PAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 297 ~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.+++.++.|++++|+|+||+||+.|+
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 89999999999999999999999886
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=3.1e-43 Score=356.43 Aligned_cols=286 Identities=16% Similarity=0.295 Sum_probs=242.8
Q ss_pred CCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHh
Q psy18014 20 GNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKEL 99 (323)
Q Consensus 20 ~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~ 99 (323)
+..||...++.+++|+|.-.+++ +..+++++++|++|+|++|+| ++++|+.++++++|+|+.+||++|+|+..+
T Consensus 3 ~~~~f~~~~~~e~~~i~~~L~~~-~~~~k~~~~~kli~~~~~G~d-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~ 76 (591)
T 2vgl_B 3 DSKYFTTNKKGEIFELKAELNNE-KKEKRKEAVKKVIAAMTVGKD-----VSSLFPDVVNCMQTDNLELKKLVYLYLMNY 76 (591)
T ss_dssp -CCTTCCCSSSHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHTTCC-----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhcccccCChHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 34577677788888876433443 455566999999999999997 788999999999999999999999999999
Q ss_pred cccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH
Q psy18014 100 SNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV 178 (323)
Q Consensus 100 ~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v 178 (323)
++.. |.+++++|+|+||++|+||++||+|||+||+++.+++++++.+.|++++.|++|||||+|+.|++++++.+|+.+
T Consensus 77 ~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 77 AKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 9864 557899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh---------hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh
Q psy18014 179 K--RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL---------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQ 247 (323)
Q Consensus 179 ~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~---------~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~ 247 (323)
+ .|++.+.+++.|.|++|+.+|+.++.++...++. .+.+++..+.. .+||+|+.+++.+..+.+.+
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~---~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE---CTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH---CCHHHHHHHHHHHHTSCCCS
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC---CCchHHHHHHHHHHHhCCCC
Confidence 7 5999999999999999999999999999887652 25677776653 58999999999998775443
Q ss_pred hcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC---CHHhH----hhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 248 NAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT---SAREL----APAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~---~~~~~----~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
+. +...+++.+.+++++.|++|++||++++.++... +++.. ..+...+. +|.++|+|+||+||+.
T Consensus 234 ~~-------~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~ 305 (591)
T 2vgl_B 234 DR-------EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRN 305 (591)
T ss_dssp HH-------HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHH
Confidence 32 3678899999999999999999999999998631 22333 34444444 4556899999999998
Q ss_pred hc
Q psy18014 321 LN 322 (323)
Q Consensus 321 l~ 322 (323)
++
T Consensus 306 l~ 307 (591)
T 2vgl_B 306 IN 307 (591)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.06 E-value=1.4e-08 Score=87.83 Aligned_cols=117 Identities=22% Similarity=0.256 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC
Q psy18014 75 FAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD 154 (323)
Q Consensus 75 ~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d 154 (323)
..+++++.++|..+|...--.+..++. ++ ++..|.+-++|+++.+|..|+++|+.+..++.++. +.+.|.|
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~~~l~~ 92 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD--ER---AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LIKALKD 92 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--GG---GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC--cc---HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HHHHHcC
Confidence 334444445555444444444443322 11 12233333344455555555555555544433322 2233444
Q ss_pred CChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 155 RNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 155 ~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
+++.||..|+.++.++- +++ .++.+.+++.|.++.|...|+..+..
T Consensus 93 ~~~~vr~~a~~aL~~~~--~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIG--DER----AVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp SSHHHHHHHHHHHHHHC--CGG----GHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--cHH----HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55555555555544442 121 12333334444444444444444333
No 6
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.03 E-value=5.1e-09 Score=99.36 Aligned_cols=297 Identities=11% Similarity=0.131 Sum_probs=153.4
Q ss_pred HHHHhhhhcCCCCCchhhHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHHHcCC-CCCchhhhhhHHHHHHhhcCCCch
Q psy18014 10 IQQLLRYKRTGNPFQNLDKTAVLQEA-RTFNDTPVNPKKCTHILTKILYLINQGE-QLGTQEATDAFFAMTKLFQSKDVI 87 (323)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ek~~i~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~-~~~~~e~s~lf~~vvkl~~s~d~~ 87 (323)
++.++.-.-.+.+|...|-..+.-+. +.|... | ..+||++|+...-. +.+ .|+--+--.+.|=++++|..
T Consensus 48 l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d-----~~lKrLvYLyl~~~~~~~-~e~iLv~Nsl~kDl~~~N~~ 119 (355)
T 3tjz_B 48 LTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--D-----PTLRRMCYLTIKEMSCIA-EDVIIVTSSLTKDMTGKEDS 119 (355)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--C-----HHHHHHHHHHHHHHTTTS-SCGGGGHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--C-----HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhcCCCcHh
Confidence 44444333333455555544555543 344333 2 45678888776532 112 23333333456668999988
Q ss_pred hHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCC--CchhhHHHHHHHHHHhccCCChHHHHHHHH
Q psy18014 88 LRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI--TDTTMIQAIERYMKQAIVDRNSAVSSAAVV 165 (323)
Q Consensus 88 lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i--~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~ 165 (323)
+|-+.-=+++.+.. ++-+--+...+.+=+.|.||+||..|+=+..++ ..|++++.+...+++++.|++|.|--+|+.
T Consensus 120 iR~lALRtL~~I~~-~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 120 YRGPAVRALCQITD-STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp HHHHHHHHHHHHCC-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 77765444444422 222345777899999999999999999887775 467999999999999999999999998888
Q ss_pred HHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-hhhHHHHHHHHhh-ccCCChHHHHHHHHHHHHH
Q psy18014 166 SIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSD-QLAVTKLVAKLTK-FTMKSPYATCMLIRIVCKL 243 (323)
Q Consensus 166 ~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d-~~~~~~lv~~L~~-~~~~~~~~~~~llr~~~~~ 243 (323)
+++.+.+.++..+.+++..+.+. .-.+|..+.--+.++..+...| +....++++.+.. ..-.++...-.-.+.+..+
T Consensus 199 lL~ei~~~d~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 199 LLYHVRKNDRLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred HHHHHHhhchHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 88888888877777776666542 1224544333333333333334 3333344444421 1235777777777776554
Q ss_pred hhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhcC
Q psy18014 244 IEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323 (323)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~~ 323 (323)
.. .+.. ......+.+..+|+++++.+.|-|.+++..+....|..+.....-+..+++++|..+...|+.+|.|
T Consensus 278 ~~-~~~~------~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 278 PG-CSAK------ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp -----------------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred cC-CCHH------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 22 1211 2445567788888899999999999999999877788999999999999999999999999998854
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.99 E-value=5e-08 Score=83.73 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 263 DYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 263 ~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+.|...+.+.++.|..+|+.++-.+.. ..+...|..++.++++.+|..|...|.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444445555666666666666666632 124445555556666666666666553
No 8
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.97 E-value=6.9e-08 Score=87.21 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=56.4
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhh-hcCCCChHHHhHHHHHhhCCC--chhhHHHHHHHHH
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTK-DMTGKEDLYRAAAIRALCSIT--DTTMIQAIERYMK 149 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~k-Dl~~~N~~ir~lALr~L~~i~--~~~~~~~l~~~v~ 149 (323)
.+..+++++.++|..+++..-..+..++...+..--++..+.+ =++|+++.+|..|+++|+.+. .+...+.+.+.+.
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~ 134 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 134 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Confidence 3334445555555555555444444443221111111222211 123445555555555555543 2223444455555
Q ss_pred HhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 150 QAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 150 ~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
+.+.|+++.||..|+.++.++-. ++ .++.+.+++.|.++.|...|+..+..+
T Consensus 135 ~~l~d~~~~vR~~a~~aL~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 135 ITAFDKSTNVRRATAFAISVIND--KA----TIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHTTCSCHHHHHHHHHHHHTC-----C----CHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHhcCC--HH----HHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 55555555555555555554421 11 233344444555555555554444444
No 9
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.96 E-value=7.8e-08 Score=86.84 Aligned_cols=219 Identities=15% Similarity=0.065 Sum_probs=146.5
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC-chhhHHHHHHHHH-Hh
Q psy18014 74 FFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT-DTTMIQAIERYMK-QA 151 (323)
Q Consensus 74 f~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~-~~~~~~~l~~~v~-~~ 151 (323)
...+++.+.++|..++.-.--.+..++. ++ ++..|.+-++|+++.+|..|..+|+.+. .++-++.+.+.+. .+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~---~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~ 99 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD---AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH---HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch---HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3456677888888888776666666652 22 4556667777888888888888888887 3445555666555 46
Q ss_pred ccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChH
Q psy18014 152 IVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPY 231 (323)
Q Consensus 152 L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~ 231 (323)
+.|+++.||..|+.++.++...+|...+..++.+..++.|.++.|...|...+..+.. +.....|+..+. -.++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~~~~~~L~~~l~---d~~~~ 174 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--KATIPLLINLLK---DPNGD 174 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----CCHHHHHHHHT---CSSHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHc---CCCHH
Confidence 7788888888888888888777776677788888888888888888887766655543 223444454443 23555
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCCh
Q psy18014 232 ATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKP 311 (323)
Q Consensus 232 ~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~ 311 (323)
.....+..+..+ .. ......+.+...++..++.|..+|+.++-.+.. + .++..|...+..+
T Consensus 175 vr~~a~~aL~~~---~~--------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--~----~~~~~L~~~l~d~-- 235 (280)
T 1oyz_A 175 VRNWAAFAININ---KY--------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--K----RVLSVLCDELKKN-- 235 (280)
T ss_dssp HHHHHHHHHHHH---TC--------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--G----GGHHHHHHHHTSS--
T ss_pred HHHHHHHHHHhh---cc--------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--H----hhHHHHHHHhcCc--
Confidence 555555555443 11 134566777777788888888888888877753 2 3445555566543
Q ss_pred hhHHHHHhhh
Q psy18014 312 VLRFAAVRTL 321 (323)
Q Consensus 312 niry~aL~~l 321 (323)
++|..|...|
T Consensus 236 ~vr~~a~~aL 245 (280)
T 1oyz_A 236 TVYDDIIEAA 245 (280)
T ss_dssp SCCHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 3777776655
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.96 E-value=6.5e-07 Score=93.36 Aligned_cols=284 Identities=13% Similarity=0.097 Sum_probs=196.7
Q ss_pred hhhHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-
Q psy18014 25 NLDKTAVLQEA-RTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI- 102 (323)
Q Consensus 25 ~~ek~~i~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~- 102 (323)
..+|..+.+.+ +.+.++ + ...|..+..++..+...+ +. ..+..+...+++++.++|...|..+...+..+.+.
T Consensus 85 ~~~~~~ik~~ll~~l~~~--~-~~vr~~~a~~i~~ia~~~-~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDS--S-PLIRATVGILITTIASKG-EL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHHHTTTTCS--S-HHHHHHHHHHHHHHHHHT-TT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHHHHHhc-Cc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 34566666664 455443 2 355677778887776543 22 24567888889999999998888887776665432
Q ss_pred Ccc---------hHhhhhhhhhhcCCCChHHHhHHHHHhhCCCch------hhHHHHHHHHHHhccCCChHHHHHHHHHH
Q psy18014 103 AED---------VIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT------TMIQAIERYMKQAIVDRNSAVSSAAVVSI 167 (323)
Q Consensus 103 ~~~---------~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~------~~~~~l~~~v~~~L~d~~~yVRk~A~~~~ 167 (323)
.+. .--++..+.+=++|+++.+|..|+++++.+... ..++.+.+.+.+.+.|.++.||+.|+-|+
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 111 223566677778899999999999999987632 23457778888899999999999999999
Q ss_pred HhhhccChhHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC------hhhHHHHHHHHhhcc--------C--
Q psy18014 168 FHMTKHSPDLVK----RWVNEVQEALNSENVMVQYHALGLLYHIRKSD------QLAVTKLVAKLTKFT--------M-- 227 (323)
Q Consensus 168 ~kl~~~~p~~v~----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d------~~~~~~lv~~L~~~~--------~-- 227 (323)
..+....|+.+. .+++.+...+.|.++.|...|+..+..+.+.. +....++++.+...- |
T Consensus 240 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 999998887653 56777778888999999988887777665432 112234444432100 0
Q ss_pred C------------ChHH----HHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCC
Q psy18014 228 K------------SPYA----TCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTS 291 (323)
Q Consensus 228 ~------------~~~~----~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~ 291 (323)
. ..|. -...+..+.... ++. ....+++++...+++.+..+..+|+.++-.+....
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~---~~~------~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~ 390 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVY---RDE------LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC 390 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHH---GGG------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhc---cHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 0 1121 122333333222 111 35678899999999999999999999999997643
Q ss_pred HH----hHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 292 AR----ELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 292 ~~----~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.. .+..+...+..+++++++.+|..|..++.
T Consensus 391 ~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLS 425 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 32 35778889999999999999999987764
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=6.1e-07 Score=78.60 Aligned_cols=210 Identities=21% Similarity=0.231 Sum_probs=149.8
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCch--hhHH----
Q psy18014 75 FAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSITDT--TMIQ---- 142 (323)
Q Consensus 75 ~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~~--~~~~---- 142 (323)
..+++++.++|..++.-.-..+..++...++ .+. ++..|.+-++++++.+|..|+++|+++... +..+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3456777888888888887788777655432 122 467778888888899999888888888753 3322
Q ss_pred -HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHH
Q psy18014 143 -AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVT 216 (323)
Q Consensus 143 -~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~ 216 (323)
...+.+.+.+.+.++.||..|+.++..+...+++..+ ..++.+.+++.+.++.+...|+.++..+...++...
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~- 163 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI- 163 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-
Confidence 2467788888888899999999988888877766543 356777888888888888888777776655432211
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-
Q psy18014 217 KLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL- 295 (323)
Q Consensus 217 ~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~- 295 (323)
+.+. ....++.+...+++.++.|..+|+.++..+...++...
T Consensus 164 ---------------------~~~~----------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 164 ---------------------KAIV----------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp ---------------------HHHH----------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred ---------------------HHHH----------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0000 12344556666778888999999999998875333322
Q ss_pred ----hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 296 ----APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 296 ----~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..++..+..++.++++.+|..|+..|.
T Consensus 207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 457889999999999999999988764
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.85 E-value=5.5e-07 Score=77.70 Aligned_cols=179 Identities=20% Similarity=0.180 Sum_probs=137.6
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
+..|.+.++|+|+.+|..|++.|+.+..++.++. +.+.+.|+++.||..|+.++.++- +++. ++.+.+++
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIG--DERA----VEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHC--CGGG----HHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhC--CHHH----HHHHHHHH
Confidence 4566777889999999999999999999766554 456778999999999999999874 3433 45566778
Q ss_pred cCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh
Q psy18014 190 NSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL 269 (323)
Q Consensus 190 ~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 269 (323)
.|.++.|...|+..+..+. ++.....++..+. -.++......++.+..+. ....++.|...+
T Consensus 91 ~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~-------------~~~~~~~L~~~l 152 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALK---DEDWFVRIAAAFALGEIG-------------DERAVEPLIKAL 152 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------------CGGGHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHH
Confidence 8999999999988777664 3445555565553 247778888888877551 133456677778
Q ss_pred cCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 270 RHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 270 ~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
++.++.|..+|+.++-.+.. ..+...|..++.++++.+|..|...|.
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999999999864 345666777788899999999998875
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.84 E-value=4.8e-07 Score=79.84 Aligned_cols=214 Identities=17% Similarity=0.179 Sum_probs=157.7
Q ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHH
Q psy18014 71 TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQ 142 (323)
Q Consensus 71 s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~ 142 (323)
.+-|..+++.+.++|..++.-.--.+..+....++ .++ ++..|.+=++++++.+|..|+++|+++.. ++..+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34577788999999999998888888554321211 222 56778888889999999999999999985 44433
Q ss_pred H-----HHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 143 A-----IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 143 ~-----l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
. ..+.+.+.+.+.++.||..|+.++..+....+.... ..++.+.+++.+.++.|...|+..+..+...++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 3 578899999999999999999999999877654422 378888999999999999998888777765432
Q ss_pred hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCH
Q psy18014 213 LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSA 292 (323)
Q Consensus 213 ~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~ 292 (323)
... +.+. ....++.|...|++.++.|...|+.++..+...++
T Consensus 171 ~~~----------------------~~~~----------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 171 EQI----------------------QAVI----------------DAGALPALVQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHH----------------------HHHH----------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHH----------------------HHHH----------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 211 0100 12234555566667888999999999998864333
Q ss_pred Hh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 293 RE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 293 ~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.. -..++..+..++.++++.+|-.|...|.
T Consensus 213 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 213 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 32 2457888999999999999998887764
No 14
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.83 E-value=7.6e-07 Score=76.23 Aligned_cols=185 Identities=18% Similarity=0.176 Sum_probs=138.9
Q ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHH
Q psy18014 71 TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQ 150 (323)
Q Consensus 71 s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~ 150 (323)
...+..+++++.++|..+|...--.+..++.. . ++..|.+-++|+|+.+|..|+++|+.+..++.++. +.+
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~---~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~ 83 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R---AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LIK 83 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G---GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h---HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HHH
Confidence 45666788999999999999888888877642 2 24455566679999999999999999998876554 556
Q ss_pred hccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCCh
Q psy18014 151 AIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSP 230 (323)
Q Consensus 151 ~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~ 230 (323)
.+.|++|.||..|+.++.++- +++ ..+.+.+++.|.++.|...|+..+..+. ++.....++..+. -.++
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~--~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~---d~~~ 152 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIG--DER----AVEPLIKALKDEDWFVRIAAAFALGEIG--DERAVEPLIKALK---DEDG 152 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC--CGG----GHHHHHHHTTCSSHHHHHHHHHHHHHHT--CGGGHHHHHHHTT---CSSH
T ss_pred HHcCCCHHHHHHHHHHHHHhC--cHH----HHHHHHHHHcCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHc---CCCH
Confidence 788999999999999999874 343 3455667788999999999988877764 3444444555443 2467
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHccc
Q psy18014 231 YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLR 288 (323)
Q Consensus 231 ~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~ 288 (323)
+.....++.+..+. .....+.|...++..++.|...|+.++-.+.
T Consensus 153 ~vr~~A~~aL~~~~-------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 153 WVRQSAADALGEIG-------------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHHC-------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhC-------------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 88888888877551 2445566666777789999999999887764
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.81 E-value=9.7e-07 Score=88.83 Aligned_cols=240 Identities=15% Similarity=0.188 Sum_probs=143.2
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhcCCCChHHHhHHHHHhhCCC--chhhHH--HHHHHHHH
Q psy18014 76 AMTKLFQSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT--DTTMIQ--AIERYMKQ 150 (323)
Q Consensus 76 ~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~--~~~~~~--~l~~~v~~ 150 (323)
.+.+-++++|..++.+.--.+..+. .++ .--++..+.+=+.|+||+||-.|..++.++. .|+.++ .+.+.+.+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~ 167 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRD 167 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHH
Confidence 4556688888888877755555543 333 3345667777778899999988888887663 356666 47788889
Q ss_pred hccCCChHHHHHHHHHHHhhhccChhH---------HH---------------------------------HHHHHHHHH
Q psy18014 151 AIVDRNSAVSSAAVVSIFHMTKHSPDL---------VK---------------------------------RWVNEVQEA 188 (323)
Q Consensus 151 ~L~d~~~yVRk~A~~~~~kl~~~~p~~---------v~---------------------------------~~~~~l~~~ 188 (323)
.|.|++|.|+..|+.++..+...+|+. +. ++++.+..+
T Consensus 168 lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~ 247 (591)
T 2vgl_B 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR 247 (591)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC
T ss_pred HhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999888887766522 22 233444455
Q ss_pred hcCCChHHHHHHHHHHHHHHh---cChhhHH----HHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccC-C-------
Q psy18014 189 LNSENVMVQYHALGLLYHIRK---SDQLAVT----KLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASG-D------- 253 (323)
Q Consensus 189 l~d~~~~V~~~al~ll~~l~~---~d~~~~~----~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~-~------- 253 (323)
+.+.|+.|.+.|..++..+.. .++.... ++...|....-.++-.+...++.+..+....|+.-. +
T Consensus 248 l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~ 327 (591)
T 2vgl_B 248 LSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK 327 (591)
T ss_dssp SCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC
T ss_pred HcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheec
Confidence 777889999999888777643 1222221 222221111113555554555544444332222100 0
Q ss_pred -------------------CCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhH
Q psy18014 254 -------------------TNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLR 314 (323)
Q Consensus 254 -------------------~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~nir 314 (323)
+......+++.+..+++..+..+.-++++.|..+....+......+..+..+++..+..++
T Consensus 328 ~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~ 407 (591)
T 2vgl_B 328 YNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVV 407 (591)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred cCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHH
Confidence 0011344555555566666677777777777666543344455566666666666555554
Q ss_pred HHH
Q psy18014 315 FAA 317 (323)
Q Consensus 315 y~a 317 (323)
--+
T Consensus 408 ~e~ 410 (591)
T 2vgl_B 408 QEA 410 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 16
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.80 E-value=3.2e-08 Score=100.36 Aligned_cols=236 Identities=11% Similarity=0.163 Sum_probs=144.0
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcccCcch-HhhhhhhhhhcCCCChHHHhHHHHHhhCCC--chhhHHHHHHHHHHhc
Q psy18014 76 AMTKLFQSKDVILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSIT--DTTMIQAIERYMKQAI 152 (323)
Q Consensus 76 ~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~-lL~iNsl~kDl~~~N~~ir~lALr~L~~i~--~~~~~~~l~~~v~~~L 152 (323)
.+.|-++++|...+-+.--++..++. +++ --++..+.+=++|+||++|-.|..++.++. .|++++.+.+.+.+.+
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL 188 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGS--SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLL 188 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTST
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 45667899999999777777777763 332 345667777778899999999999998885 5788888999999999
Q ss_pred cCCChHHHHHHHHHHHhhhccChhHH---HHHHHHHHHHhc---------------CCChHHHHHHHHHHHHHHhcChhh
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDLV---KRWVNEVQEALN---------------SENVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~v---~~~~~~l~~~l~---------------d~~~~V~~~al~ll~~l~~~d~~~ 214 (323)
.|++|.|+-.|+.++..+...+|+.. +++++.+-..|. ..+|..+...+.++..+...++..
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~ 268 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS 268 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999998888742 233333333332 247777766666666666555432
Q ss_pred H---HHHHHHHhhc----cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcc
Q psy18014 215 V---TKLVAKLTKF----TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL 287 (323)
Q Consensus 215 ~---~~lv~~L~~~----~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l 287 (323)
. ..++..+... .-.++......++.+..+ ..++.. .....+.+..++.+.++.|.|-|+.++..+
T Consensus 269 ~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~~~~~l-------~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i 340 (618)
T 1w63_A 269 SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-KSESGL-------RVLAINILGRFLLNNDKNIRYVALTSLLKT 340 (618)
T ss_dssp HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-CCCHHH-------HHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-CCCHHH-------HHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 2 2233332110 001223333444444322 111110 123345555556666666666666666555
Q ss_pred cCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 288 RRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 288 ~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
....+..+......+-..+..+|..+|-.|+.++
T Consensus 341 ~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 341 VQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp HHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence 4333344444444555555555666666655544
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.78 E-value=2.6e-06 Score=81.20 Aligned_cols=246 Identities=14% Similarity=0.100 Sum_probs=174.3
Q ss_pred hhHHHHHHhhcCC-CchhHHHHHHHHHHhcccCcc---hH---hhhhhhhhhcCCCChHHHhHHHHHhhCCCch--hhHH
Q psy18014 72 DAFFAMTKLFQSK-DVILRRMVYLGIKELSNIAED---VI---IVTSSLTKDMTGKEDLYRAAAIRALCSITDT--TMIQ 142 (323)
Q Consensus 72 ~lf~~vvkl~~s~-d~~lKkl~Ylyl~~~~~~~~~---~l---L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~--~~~~ 142 (323)
.+...+++++.++ |..++.-..-.+..++...++ .+ =++..|.+=++++++.+|..|+.+|+++... +..+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5677788889988 889998888888888664322 12 1567788888899999999999999998763 2222
Q ss_pred -----HHHHHHHHhccC-CChHHHHHHHHHHHhhhccC-h----hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q psy18014 143 -----AIERYMKQAIVD-RNSAVSSAAVVSIFHMTKHS-P----DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 143 -----~l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~-p----~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d 211 (323)
...+.+.+.+.+ .++.||+.|+.++..+.... | ..+...++.+.+++.+.|+.+...+...+..+....
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 356778888885 78999999999999998654 3 234567888889999999999999988888776644
Q ss_pred hh---------hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHH
Q psy18014 212 QL---------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAH 282 (323)
Q Consensus 212 ~~---------~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k 282 (323)
+. .+..++..+. -.++-.+...++.+..+...++.... .-.....++.+...|++.++.|..+|+.
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLM---HNDYKVVSPALRAVGNIVTGDDIQTQ--VILNCSALQSLLHLLSSPKESIKKEACW 298 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHH--HHHTTTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHC---CCchhHHHHHHHHHHHHhhCChHHHH--HHHHCccHHHHHHHHcCCCHHHHHHHHH
Confidence 22 1233444332 23555666666666655322221000 0001246788888899999999999999
Q ss_pred HHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 283 AIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 283 ~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
++..+....+... ..++..+..++.++++.+|..|...+.
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999975333222 467778888888899999999877653
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.78 E-value=6e-07 Score=88.53 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=188.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCCC--CchhhhhhHHHHHHhhcCC-CchhHHHHHHHHHHhcccCcc---hHh---hhhhhh
Q psy18014 44 NPKKCTHILTKILYLINQGEQL--GTQEATDAFFAMTKLFQSK-DVILRRMVYLGIKELSNIAED---VII---VTSSLT 114 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~--~~~e~s~lf~~vvkl~~s~-d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~ 114 (323)
+......++..+-.+...+.+- ..+.-..+...+++++.++ |..++...--++..++...++ .++ ++..|.
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 4444446665555554443221 1112235677888999987 889999888888888764322 121 356666
Q ss_pred hhcCCCChHHHhHHHHHhhCCCch--hhH-----HHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hh----HHHHHH
Q psy18014 115 KDMTGKEDLYRAAAIRALCSITDT--TMI-----QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PD----LVKRWV 182 (323)
Q Consensus 115 kDl~~~N~~ir~lALr~L~~i~~~--~~~-----~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~----~v~~~~ 182 (323)
+=+.++++.+|..|+.+|+++... +.. ....+.+.+.+.+.++.||+.|+.++..+.... |. .....+
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l 259 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHH
Confidence 666778999999999999998653 222 245788899999999999999999999998654 31 233578
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH---------HHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCC
Q psy18014 183 NEVQEALNSENVMVQYHALGLLYHIRKSDQLAV---------TKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGD 253 (323)
Q Consensus 183 ~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~---------~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~ 253 (323)
+.+..++.+.++.|...|+.++..+...++... ..++..+. -.++..+...++.+..+...++...
T Consensus 260 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~-- 334 (530)
T 1wa5_B 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQT-- 334 (530)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC---CCChhhHHHHHHHHHHHHcCCHHHH--
Confidence 888999999999999999988888876544322 23333332 2456677777777776533222110
Q ss_pred CCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 254 TNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 254 ~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..-....+++.|..+|++.+..|..+|+.++..+...++... ..++..|..+|.++++.+|..|+..|.
T Consensus 335 ~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 335 QVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 000013567788888999999999999999999975433322 356778888888899999999988764
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.77 E-value=3.5e-06 Score=82.80 Aligned_cols=274 Identities=13% Similarity=0.122 Sum_probs=187.8
Q ss_pred ChHHHHHHHHHHHHHHHcCC-CC-CchhhhhhHHHHHHhhcCCC-chhHHHHHHHHHHhcccCcc---hHh---hhhhhh
Q psy18014 44 NPKKCTHILTKILYLINQGE-QL-GTQEATDAFFAMTKLFQSKD-VILRRMVYLGIKELSNIAED---VII---VTSSLT 114 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~-~~-~~~e~s~lf~~vvkl~~s~d-~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~ 114 (323)
+......+++.+-.+...+. +. ..+....+...+++++.++| ..++....-++.+++...++ .++ ++..|.
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 44444356655444434332 11 11222356777889999887 89999888888888775433 222 577788
Q ss_pred hhcCCCChHHHhHHHHHhhCCCc--hhhHH-----HHHHHHHHhc-cCCChHHHHHHHHHHHhhhccChh----HHHHHH
Q psy18014 115 KDMTGKEDLYRAAAIRALCSITD--TTMIQ-----AIERYMKQAI-VDRNSAVSSAAVVSIFHMTKHSPD----LVKRWV 182 (323)
Q Consensus 115 kDl~~~N~~ir~lALr~L~~i~~--~~~~~-----~l~~~v~~~L-~d~~~yVRk~A~~~~~kl~~~~p~----~v~~~~ 182 (323)
+=+.++++.+|..|+.+|++|.. ++... ...+++.+.+ .+.++.|++.|+-++..+....|. .+...+
T Consensus 167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l 246 (528)
T 4b8j_A 167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPAL 246 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 88899999999999999999853 22222 2466788888 788999999999999999876432 234578
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCC
Q psy18014 183 NEVQEALNSENVMVQYHALGLLYHIRKSDQLA---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGD 253 (323)
Q Consensus 183 ~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~ 253 (323)
+.+..++.+.++.|...|+..+..+...+... +..++..|. -.++..+...++.+..+...++....
T Consensus 247 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~- 322 (528)
T 4b8j_A 247 PALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---HPSPSVLIPALRTVGNIVTGDDAQTQ- 322 (528)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---CCChhHHHHHHHHHHHHHcCCHHHHH-
Confidence 88999999999999999998888887654432 133343333 23567777777777765332221100
Q ss_pred CCCCchhHHHHHHHHhcCC-ChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 254 TNWSNSPLFDYLETCLRHK-SETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 254 ~~~~~~~~~~~l~~~L~~~-~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.-.....++.|..+|++. ++.|..+|+.++..+...++... ..++..|..+|.++++.+|..|+..|.
T Consensus 323 -~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 323 -CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp -HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 000134567788888888 99999999999999975333322 356678888888889999988887663
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.72 E-value=3.1e-06 Score=83.39 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=173.6
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhccc--Ccc--hH---hhhhhhhhhcCCC-ChHHHhHHHHHhhCCCc--hhhH
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNI--AED--VI---IVTSSLTKDMTGK-EDLYRAAAIRALCSITD--TTMI 141 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~--~~~--~l---L~iNsl~kDl~~~-N~~ir~lALr~L~~i~~--~~~~ 141 (323)
.....+++.+.++|...+...-..+..+... .+. .+ =++..|.+-++++ |+.+|-.|+++|+++.. ++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4456677888999999999888888877432 221 12 1466778888887 99999999999999876 3333
Q ss_pred H-----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q psy18014 142 Q-----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 142 ~-----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d 211 (323)
. ...+.+.+.|.+.++.||..|+.++..+....|+.-. ..++.+.+++.+.++.|..+|+..+..+....
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 3 3367788888889999999999999999987665332 36778888999989999999998888887653
Q ss_pred -h--------hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHH
Q psy18014 212 -Q--------LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAH 282 (323)
Q Consensus 212 -~--------~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k 282 (323)
+ ..+..|+..+. -.++..+...+..+..+....++.- ..-....+++.|..+|++.++.|...|+.
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEAI--QAVIDVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHHH--HHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHHH--HHHHhcCcHHHHHHHHCCCChhhHHHHHH
Confidence 2 11233333332 2356666555666554422211100 00001255677888888999999999999
Q ss_pred HHHcccCCCHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 283 AIVNLRRTSARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 283 ~i~~l~~~~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
++..+....... -..++..+..+|.++++.+|..|+..|.
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999997543322 1467888999999999999999988764
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.68 E-value=9.4e-06 Score=77.30 Aligned_cols=283 Identities=13% Similarity=0.097 Sum_probs=179.2
Q ss_pred hhHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCC--CchhHHHHHHHHHHhccc
Q psy18014 26 LDKTAVLQEA-RTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSK--DVILRRMVYLGIKELSNI 102 (323)
Q Consensus 26 ~ek~~i~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~--d~~lKkl~Ylyl~~~~~~ 102 (323)
.++..+.+.+ ..+.+.+...++.-.++..+.... +++..+..+...++..++++ |...|..+...+..+.+.
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~-----~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 86 NARREVKNYVLQTLGTETYRPSSASQCVAGIACAE-----IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHH-----GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHh-----ccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3444555543 444443221144334454444332 11113456777788888888 888888887777776542
Q ss_pred C-c-----chHhhhhhhhhhcCCC--ChHHHhHHHHHhhCCC---chh-----hHHHHHHHHHHhccCCChHHHHHHHHH
Q psy18014 103 A-E-----DVIIVTSSLTKDMTGK--EDLYRAAAIRALCSIT---DTT-----MIQAIERYMKQAIVDRNSAVSSAAVVS 166 (323)
Q Consensus 103 ~-~-----~~lL~iNsl~kDl~~~--N~~ir~lALr~L~~i~---~~~-----~~~~l~~~v~~~L~d~~~yVRk~A~~~ 166 (323)
. + ..--+.+.+.+=++++ ++.+|..|+++++++. ... ..+++.+.+.+.+.+.++.||+.|+-+
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 1 1 1112455566666777 8999999999998742 211 234567788888999999999999999
Q ss_pred HHhhhccChhH----HH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--------------------hh-----hHH
Q psy18014 167 IFHMTKHSPDL----VK-RWVNEVQEALNSENVMVQYHALGLLYHIRKSD--------------------QL-----AVT 216 (323)
Q Consensus 167 ~~kl~~~~p~~----v~-~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d--------------------~~-----~~~ 216 (323)
+..+....|+. +. .+++.+...+.+.++.|...|+.++..+.... .. ...
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 99888666543 23 45555666677888889888887766654321 00 113
Q ss_pred HHHHHHh----hc---cCCChH----HHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHH
Q psy18014 217 KLVAKLT----KF---TMKSPY----ATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285 (323)
Q Consensus 217 ~lv~~L~----~~---~~~~~~----~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~ 285 (323)
.+++.+. .. ...+.| .-...+..++...+ + .....+++.+...+++.+.-+...|+.++-
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~---~------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---D------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFG 391 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT---T------THHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc---H------HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3444331 10 011123 22334444443322 1 135678888888999999999999999998
Q ss_pred cccCCCH-----HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 286 NLRRTSA-----RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 286 ~l~~~~~-----~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.+..... .....++..+...+.++++.+|..|..++.
T Consensus 392 ~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp HTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8864211 234778899999999999999999998764
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.65 E-value=4.6e-06 Score=71.50 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=134.7
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCC--chhhHHH
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSIT--DTTMIQA 143 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~--~~~~~~~ 143 (323)
..++.+++++.++|..++.-....+..++...++ .++ ++..|.+=+.++|+.+|..|+++|+++. .++..+.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4566778999999999999999999999754433 222 4677888889999999999999999996 4444433
Q ss_pred -----HHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh
Q psy18014 144 -----IERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL 213 (323)
Q Consensus 144 -----l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~ 213 (323)
..+.+.+.|.+.++.||..|+.++..+...+++..+ .+++.+-+++.+.++.|..+|+..+..+...++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 458899999999999999999999999987776543 3678889999999999999998888777654322
Q ss_pred hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHccc
Q psy18014 214 AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLR 288 (323)
Q Consensus 214 ~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~ 288 (323)
.. ..+. ....++.|...+++.++.|.-+|+.++-.+.
T Consensus 172 ~~----------------------~~~~----------------~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 172 QK----------------------QAVK----------------EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HH----------------------HHHH----------------HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HH----------------------HHHH----------------HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 21 0100 1234455666667788888888888776654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.64 E-value=9.3e-06 Score=77.30 Aligned_cols=244 Identities=15% Similarity=0.091 Sum_probs=169.3
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcc--cCcc---hH---hhhhhhhhhcCCC-ChHHHhHHHHHhhCCCc--hhhH-
Q psy18014 74 FFAMTKLFQSKDVILRRMVYLGIKELSN--IAED---VI---IVTSSLTKDMTGK-EDLYRAAAIRALCSITD--TTMI- 141 (323)
Q Consensus 74 f~~vvkl~~s~d~~lKkl~Ylyl~~~~~--~~~~---~l---L~iNsl~kDl~~~-N~~ir~lALr~L~~i~~--~~~~- 141 (323)
...+++.++++|...+......+..+.. ..+. .+ =++..|.+=++++ |+.+|-.|.++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4556777889999999988888877632 2221 11 2355666667777 89999999999998865 3322
Q ss_pred ----HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcC-CChHHHHHHHHHHHHHHhcC
Q psy18014 142 ----QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNS-ENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 142 ----~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d-~~~~V~~~al~ll~~l~~~d 211 (323)
....+.+.+.+.+.++.||..|+.++..+....++... ..++.+..++.+ .++.|..+|+..+..+....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34778899999999999999999999999987765433 356778888885 68899999998888887543
Q ss_pred -h--------hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHH
Q psy18014 212 -Q--------LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAH 282 (323)
Q Consensus 212 -~--------~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k 282 (323)
+ ..+..++..+. -.++..+......+..+....++... .-.....++.+...|++.++.|...|+.
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDKIQ--AVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHHHH--HHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHHHH--HHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 2 12234444433 23555555555555444221111000 0001345677777888999999999999
Q ss_pred HHHcccCCCHHh----H-hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 283 AIVNLRRTSARE----L-APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 283 ~i~~l~~~~~~~----~-~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
++..+....+.. . ..++..+..+++++++.+|..|+..|.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999987543322 2 358889999999999999999998774
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.63 E-value=1.4e-06 Score=85.77 Aligned_cols=212 Identities=14% Similarity=0.146 Sum_probs=133.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCC----CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh--HHHHHHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSI----TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD--LVKRWVN 183 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i----~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~--~v~~~~~ 183 (323)
...+.+-++|+++.+|..|+++++.+ ..+...+.+.+.+.+.+.|.++.||+.|+.++..+....++ ..+.+++
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 245 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444556788999999998888876 33455677788888888899999999999988887765432 3345777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc-Chhh-HHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchh
Q psy18014 184 EVQEALNSENVMVQYHALGLLYHIRKS-DQLA-VTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260 (323)
Q Consensus 184 ~l~~~l~d~~~~V~~~al~ll~~l~~~-d~~~-~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
.+.+++.|.++.|...+...+..+... ++.. ...+++.+... .-.++.........+..+...-+... ......+.
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~ 324 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC-RENVIMSQ 324 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT-HHHHHHHT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh-hhhHHHHH
Confidence 788888888888888876666655432 1111 12223322210 11244444444444443322111000 00001456
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHcccCC-CH-HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRT-SA-RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 261 ~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~-~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+++.+...++..+..|...++.++..+... +. .........+..++..+++++|..|+..+.
T Consensus 325 l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 777888888888999999998888877421 11 223456677778888888899998887653
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.57 E-value=9.3e-06 Score=70.90 Aligned_cols=175 Identities=21% Similarity=0.215 Sum_probs=127.6
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHH-----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH---
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQ-----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK--- 179 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~-----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~--- 179 (323)
+..|.+-++++++.+|-.|+++|+++.. ++... ...+.+.+.+.+.++.||..|+.++..+...+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567778888999999999999988843 22332 3578888999999999999999999999887666543
Q ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCC
Q psy18014 180 --RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWS 257 (323)
Q Consensus 180 --~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~ 257 (323)
..++.+.+++.+.++.+..+|+.++..+...++.... .+.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----------------------~~~---------------- 125 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK----------------------AIV---------------- 125 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH----------------------HHH----------------
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH----------------------HHH----------------
Confidence 3677888888888888888888877777654322210 000
Q ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 258 NSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 258 ~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
....++.|...+++.++.|...|+.++..+...++.. -..++..+..++.++++.++..|+..|.
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1223455556666788889999999998887533322 1457888888999999999988887763
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.57 E-value=1.8e-05 Score=77.66 Aligned_cols=245 Identities=16% Similarity=0.105 Sum_probs=169.9
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHhccc-C-cc--hHh---hhhhhhhhcCCCC-hHHHhHHHHHhhCCCc--hhhHH
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKELSNI-A-ED--VII---VTSSLTKDMTGKE-DLYRAAAIRALCSITD--TTMIQ 142 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~-~~--~lL---~iNsl~kDl~~~N-~~ir~lALr~L~~i~~--~~~~~ 142 (323)
-...+++.+.++|...+...-.++..+... . +. .+. ++..|.+=+.+++ +.+|-.|+.+|+++.. ++...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 356678889999999988887888777432 2 21 122 4666777777776 9999999999998876 33332
Q ss_pred -----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHh-cCCChHHHHHHHHHHHHHHhcC
Q psy18014 143 -----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEAL-NSENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 143 -----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l-~d~~~~V~~~al~ll~~l~~~d 211 (323)
...+.+.+.|.++++.||..|+.++.++....|+... ..++.+-.++ .+.++.+..+|...+..+....
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 3678889999999999999999999999877665332 2466777777 6778899999998888887653
Q ss_pred hh--------hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHH
Q psy18014 212 QL--------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHA 283 (323)
Q Consensus 212 ~~--------~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~ 283 (323)
+. .+..|+..+. -.++..+...+..+..+....+... ..-.....++.|..+|++.++.|...|+.+
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~--~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIH---SNDEEVLTDACWALSYLSDGTNDKI--QAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSCHHHH--HHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 21 1233333332 2466666666666655432211100 000012356788888899999999999999
Q ss_pred HHcccCCCHHhH-----hhHHHHHHHHhcCC-ChhhHHHHHhhhc
Q psy18014 284 IVNLRRTSAREL-----APAVSVLQLFCSSP-KPVLRFAAVRTLN 322 (323)
Q Consensus 284 i~~l~~~~~~~~-----~~~~~~l~~~L~s~-~~niry~aL~~l~ 322 (323)
+..+........ ..++..|..+|.++ ++.++..|+.+|.
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 999875333221 45678888899988 8999998887764
No 27
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.54 E-value=2.9e-05 Score=80.06 Aligned_cols=283 Identities=10% Similarity=0.087 Sum_probs=179.3
Q ss_pred hHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCC-CchhHHHHHHHHHHhccc-C
Q psy18014 27 DKTAVLQEA-RTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSK-DVILRRMVYLGIKELSNI-A 103 (323)
Q Consensus 27 ek~~i~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~-d~~lKkl~Ylyl~~~~~~-~ 103 (323)
++..+.+.+ +.+.+.+ .+.|..+..+|..+... ++++..+..++..++..+.++ |...|..+...+..+.+. .
T Consensus 92 ~~~~ik~~ll~~l~~~~---~~vr~~~~~~l~~i~~~-~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 92 AKNQIKTNALTALVSIE---PRIANAAAQLIAAIADI-ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHH-HGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHHHh-hCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 444555553 4454432 34456666666665542 222223567888889999988 888877766555555432 1
Q ss_pred c-------chHhhhhhhhhhcCCC--ChHHHhHHHHHhhCCC---chh-----hHHHHHHHHHHhccCCChHHHHHHHHH
Q psy18014 104 E-------DVIIVTSSLTKDMTGK--EDLYRAAAIRALCSIT---DTT-----MIQAIERYMKQAIVDRNSAVSSAAVVS 166 (323)
Q Consensus 104 ~-------~~lL~iNsl~kDl~~~--N~~ir~lALr~L~~i~---~~~-----~~~~l~~~v~~~L~d~~~yVRk~A~~~ 166 (323)
+ ..--+...+.+=++|+ ++.+|..|+++++.+. ... ..+++.+.+.+.+.+.++.||+.|+-+
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 1223445555556676 8999999999998742 212 235678888889999999999999999
Q ss_pred HHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-----------------h----hhHHHHHH
Q psy18014 167 IFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSD-----------------Q----LAVTKLVA 220 (323)
Q Consensus 167 ~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d-----------------~----~~~~~lv~ 220 (323)
+..+...+|+.+. .+++.+...+.|.++.|...|+.++..+.... + ..+..+++
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHH
Confidence 9998877665433 45555666778888889888887766554321 0 11133444
Q ss_pred HHh----hc---cCCChHHH----HHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccC
Q psy18014 221 KLT----KF---TMKSPYAT----CMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 221 ~L~----~~---~~~~~~~~----~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~ 289 (323)
.+. .. ...+.|.. ...+..+.... +.. ....+++.+...+++.+..+...|+.++-.+..
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~---~~~------~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC---GNH------ILEPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---GGG------GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---cHh------HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 432 10 01122322 12222222221 111 367788999999988898999999999888865
Q ss_pred CC-H----HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 290 TS-A----RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 290 ~~-~----~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.. + ..+...+..+...+..+++.+|..|+..+.
T Consensus 399 ~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~ 436 (861)
T 2bpt_A 399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436 (861)
T ss_dssp SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 32 1 234567778888888899999999887654
No 28
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.54 E-value=3e-06 Score=83.37 Aligned_cols=136 Identities=10% Similarity=0.138 Sum_probs=79.9
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhccc-Ccc------hHhhhhhhhhhcCCCChHHHhHHHHHhhCCC----chhh
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AED------VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT----DTTM 140 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~------~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~----~~~~ 140 (323)
.++..+.+++..++..+|+.+...+..+++. .++ .--++..+.+-++|+|+.+|..|..+++.+. ....
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 3455556666666777777666666666442 111 1113444555556677777777777776663 2223
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-h-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-D-LVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-~-~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
.+.+.+.+.+.+.|.++.||..|+-++..+....+ + ..+.+++.+.+++.|.+..|..+++..+..+
T Consensus 361 ~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 45566666677777777777777766665554332 2 2345666666667777766666665555544
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.51 E-value=1.8e-05 Score=67.68 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=128.7
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCCc--hhhHH-----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH----
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSITD--TTMIQ-----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR---- 180 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~-----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~---- 180 (323)
.|.+=++|+|+.+|..|+++|+++.. ++..+ ...+.+.+.|.+.++.||..|+.++..+...+++....
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 44555678999999999999998863 34433 35688999999999999999999999998777765432
Q ss_pred -HHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCch
Q psy18014 181 -WVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNS 259 (323)
Q Consensus 181 -~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~ 259 (323)
.++.+-+++.+.++.|...|..++..+...++... +.+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----------------------~~~~----------------~~ 137 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI----------------------QAVI----------------DA 137 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH----------------------HHHH----------------HT
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHH----------------------HHHH----------------Hc
Confidence 56788889999999999999888777765432211 0000 12
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 260 PLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 260 ~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..++.|...|++.++.|...|+.++..+...++.. -..++..|..++.++++.+|-.|+..|.
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455556667788999999999999886543322 2467889999999999999999887764
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.48 E-value=1.2e-05 Score=70.82 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=133.8
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCchhh-----
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSITDTTM----- 140 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~----- 140 (323)
.+...+++++.+++..++.-....+.+++...++ .++ ++..|.+=++++|+.+|..|+.+|+++...+-
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 4556788999999999999999999998764332 222 56778888888999999999999999875422
Q ss_pred -HH-HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh
Q psy18014 141 -IQ-AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL 213 (323)
Q Consensus 141 -~~-~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~ 213 (323)
.+ ...+.+.+.+.+.++.||..|+.++..+....++..+ ..++.+-+++.+.++.|..+|+.++..+...++.
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 22 3678899999999999999999999999987776543 3577888899999999999988887777644322
Q ss_pred hHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHccc
Q psy18014 214 AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLR 288 (323)
Q Consensus 214 ~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~ 288 (323)
... .+. ....++.+...+++.++.|.-+|+.++..+.
T Consensus 214 ~~~----------------------~~~----------------~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 214 QKQ----------------------AVK----------------EAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHH----------------------HHH----------------HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHH----------------------HHH----------------HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 210 000 1223455555666788888888888887764
No 31
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.40 E-value=2.6e-07 Score=74.45 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=81.7
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccC
Q psy18014 75 FAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVD 154 (323)
Q Consensus 75 ~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d 154 (323)
..+++++.++|..++....-.+..+++ .. +..|.+-++|+|+.+|..|+++|+.+..++.++. +.+.+.|
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~---~~---~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~----L~~~L~d 84 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGD---EA---FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEP----LIKLLED 84 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSS---TT---HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHH----HHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCc---hH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHcC
Confidence 345677888888888766655554433 22 3667777788999999999999999998765544 4555668
Q ss_pred CChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy18014 155 RNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLL 204 (323)
Q Consensus 155 ~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll 204 (323)
+++.||..|+.++.++- ++ +.++.+.+++.|.|+.|...|...|
T Consensus 85 ~~~~VR~~A~~aL~~~~--~~----~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 85 DSGFVRSGAARSLEQIG--GE----RVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp CCTHHHHHHHHHHHHHC--SH----HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHhC--cH----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999884 23 3456677778889998888876554
No 32
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.35 E-value=0.00029 Score=72.68 Aligned_cols=284 Identities=13% Similarity=0.106 Sum_probs=176.1
Q ss_pred hhhHHHHHHHH-HHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCC--CchhHHHHHHHHHHhcc
Q psy18014 25 NLDKTAVLQEA-RTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSK--DVILRRMVYLGIKELSN 101 (323)
Q Consensus 25 ~~ek~~i~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~--d~~lKkl~Ylyl~~~~~ 101 (323)
..++..+.+.+ +.+.+.+....+.-..+..+......... +..++..++.++.++ |...|+.+...+..+.+
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~~~~~~~~l~~i~~~~~~~~~-----w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 85 ANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQ-----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp HHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTC-----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhCcccc-----cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555553 44544332224433455555443221122 456777788888888 88888877777766644
Q ss_pred c-Cc-----chHhhhhhhhhhcCCC--ChHHHhHHHHHhhCCCc---hhh-----HHHHHHHHHHhccCCChHHHHHHHH
Q psy18014 102 I-AE-----DVIIVTSSLTKDMTGK--EDLYRAAAIRALCSITD---TTM-----IQAIERYMKQAIVDRNSAVSSAAVV 165 (323)
Q Consensus 102 ~-~~-----~~lL~iNsl~kDl~~~--N~~ir~lALr~L~~i~~---~~~-----~~~l~~~v~~~L~d~~~yVRk~A~~ 165 (323)
. .+ ..--++..+.+-++++ |+.+|..|+++++.+.. +.+ .+.+.+.+.+.+.+.++.||+.|+-
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~ 239 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 11 1222344555555665 78999999999987542 121 1356777888889999999999999
Q ss_pred HHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--------------------hh-----hH
Q psy18014 166 SIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSD--------------------QL-----AV 215 (323)
Q Consensus 166 ~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d--------------------~~-----~~ 215 (323)
|+..+...+|+.+. .+++.+-..+.+.++.|...|+.++..+.... .. ..
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (876)
T 1qgr_A 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (876)
T ss_dssp HHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH
Confidence 99998877776543 45555556667888888888876665553221 00 11
Q ss_pred HHHHHHHh----hccC---CChH----HHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHH
Q psy18014 216 TKLVAKLT----KFTM---KSPY----ATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAI 284 (323)
Q Consensus 216 ~~lv~~L~----~~~~---~~~~----~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i 284 (323)
..+++.+. ...- .+.| .-...+..+....+ +. ..+.+++.+...+++.+..+...|+.++
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~------~~~~~l~~l~~~l~~~~~~~r~~a~~~l 390 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DD------IVPHVLPFIKEHIKNPDWRYRDAAVMAF 390 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GG------GHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc---Hh------hHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 23333221 1000 1123 22233333333221 11 3577888888888889999999999999
Q ss_pred HcccCCC-HH----hHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 285 VNLRRTS-AR----ELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 285 ~~l~~~~-~~----~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
-.+.... +. ....++..+...+..+++.+|..|+.++.
T Consensus 391 ~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp HHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8886432 12 34667788888889999999999988764
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.34 E-value=0.00026 Score=69.87 Aligned_cols=265 Identities=13% Similarity=0.106 Sum_probs=171.7
Q ss_pred HHHHHHHHcCCCC-Cc-hhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCCh--
Q psy18014 53 TKILYLINQGEQL-GT-QEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKED-- 122 (323)
Q Consensus 53 ~kli~~~~~G~~~-~~-~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~-- 122 (323)
..+|..+..|.+- .. +--....+.+++++.+++..++...--++.+++...++ .++ ++..|..=+.+++.
T Consensus 141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH
Confidence 3567777776431 00 01113456778999999999999999999999765433 222 23344444444432
Q ss_pred ---HHHhH---HHHHhhCCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHH
Q psy18014 123 ---LYRAA---AIRALCSIT----DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQE 187 (323)
Q Consensus 123 ---~ir~l---ALr~L~~i~----~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~ 187 (323)
.+... +|..++.-. ....+..+.+.+.+.+.+.++.|+..|+.|+..+....++... ..++.+.+
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 22223 344444332 2345677889999999999999999999999999987766544 25778889
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcChhhHH---------HHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCc
Q psy18014 188 ALNSENVMVQYHALGLLYHIRKSDQLAVT---------KLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSN 258 (323)
Q Consensus 188 ~l~d~~~~V~~~al~ll~~l~~~d~~~~~---------~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~ 258 (323)
++.+.++.|...|+.++..+...+..... .|+.-|. -.++..+......+..+...++.... .-..
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~~~~--~v~~ 375 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQDQIQ--QVVN 375 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHHHHH--HHHH
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHHHHH--HHHh
Confidence 99999999999999888877655433221 1222221 23455555555555444221121000 0001
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHcccCC-CHHh----H-hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 259 SPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-SARE----L-APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 259 ~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~~~----~-~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..++..+...|++.+.-|..+|+.++..+... .++. . ..++.+|-.+|.++|+.++..+|..|.
T Consensus 376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 445 (529)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34566777788899999999999999988531 2222 1 357889999999999999999988764
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.32 E-value=0.00088 Score=66.04 Aligned_cols=270 Identities=9% Similarity=0.079 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHcCCCCC--chhhhhhHHHHHHhhcC-CCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhc
Q psy18014 47 KCTHILTKILYLINQGEQLG--TQEATDAFFAMTKLFQS-KDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDM 117 (323)
Q Consensus 47 k~~~~l~kli~~~~~G~~~~--~~e~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl 117 (323)
....++..+-.+.+...+.+ .+--+.+.+.+++++.. ++..++.-.--.+.+++...++ +++ ++..|.+=+
T Consensus 92 ~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL 171 (529)
T 3tpo_A 92 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171 (529)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 33366666655555554322 22334667778888864 5577888777788888765432 232 577888889
Q ss_pred CCCChHHHhHHHHHhhCCCc--hhhHHHH-----HHHHHHhccCCC-----hHHHHHHHHHHHhhhccC---h--hHHHH
Q psy18014 118 TGKEDLYRAAAIRALCSITD--TTMIQAI-----ERYMKQAIVDRN-----SAVSSAAVVSIFHMTKHS---P--DLVKR 180 (323)
Q Consensus 118 ~~~N~~ir~lALr~L~~i~~--~~~~~~l-----~~~v~~~L~d~~-----~yVRk~A~~~~~kl~~~~---p--~~v~~ 180 (323)
.++++.+|-.|+.+|++|.. ++.-..+ .+++...+.+.+ ..+.+.|+.++..+.... + +.++.
T Consensus 172 ~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 251 (529)
T 3tpo_A 172 ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 251 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhh
Confidence 99999999999999999953 4443333 567778887654 346777888888877543 2 33457
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhccc
Q psy18014 181 WVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS 251 (323)
Q Consensus 181 ~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~ 251 (323)
.++.+..++.+.++.|...|...+..+...+... +..|+..|. -.++..+...++.+..+...++...
T Consensus 252 ~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~ 328 (529)
T 3tpo_A 252 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQT 328 (529)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHH
Confidence 8899999999999999999988888777654322 234444443 2466777777787776533222110
Q ss_pred CCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 252 GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 252 ~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
. .-.....+..+..+|++.++.|..+|+.++..+...++... ..++..+..++.+++..+|..|...|
T Consensus 329 ~--~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 329 Q--KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp H--HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred H--HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00012344567778889999999999999999875433321 35778888899999999998877655
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.31 E-value=0.00056 Score=67.23 Aligned_cols=283 Identities=9% Similarity=0.086 Sum_probs=182.1
Q ss_pred HHHH-HHccCCCCChHHHHHHHHHHHHHHHcCCCCC--chhhhhhHHHHHHhhcC-CCchhHHHHHHHHHHhcccCcc--
Q psy18014 32 LQEA-RTFNDTPVNPKKCTHILTKILYLINQGEQLG--TQEATDAFFAMTKLFQS-KDVILRRMVYLGIKELSNIAED-- 105 (323)
Q Consensus 32 ~qe~-~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~--~~e~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~~~-- 105 (323)
++|+ +.+++. |......+.+++=.+.+...+.+ .+--+.+-+..|+++.+ ++..++.-.--++.+++..+++
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3443 445444 33333355554444444443322 22223566778898875 4577887676777887654433
Q ss_pred -hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHHH-----HHHHHHHhccCCC-----hHHHHHHHHHHHh
Q psy18014 106 -VII---VTSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQA-----IERYMKQAIVDRN-----SAVSSAAVVSIFH 169 (323)
Q Consensus 106 -~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~~-----l~~~v~~~L~d~~-----~yVRk~A~~~~~k 169 (323)
++. ++..|.+=+.++++.+|-.|+.+|++|.. ++.-.. ..+++...+.+.+ ..+.+.|+.++..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 222 46778888999999999999999999853 343333 3567778887654 4567788888888
Q ss_pred hhccC---h--hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---------HHHHHHHHhhccCCChHHHHH
Q psy18014 170 MTKHS---P--DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---------VTKLVAKLTKFTMKSPYATCM 235 (323)
Q Consensus 170 l~~~~---p--~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---------~~~lv~~L~~~~~~~~~~~~~ 235 (323)
+.+.. + +.++..++.+..++.+.++.|...|...+..+...+... ...|+..|. -.++-.+..
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~ 293 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTP 293 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc---CCChhhhhH
Confidence 77543 2 234578899999999999999999988888886554322 234454443 246677777
Q ss_pred HHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCC
Q psy18014 236 LIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPK 310 (323)
Q Consensus 236 llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~ 310 (323)
.++.+..+...++.... .-.....+..+..+|++.++.|..+|+.++..+...+.... ..++..+..++.+++
T Consensus 294 al~aL~nl~~~~~~~~~--~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQ--KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHTTSCHHHHH--HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHhhcCCHHHHH--HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 77777765322221100 00011223445567789999999999999999975443322 457788889999999
Q ss_pred hhhHHHHHhhh
Q psy18014 311 PVLRFAAVRTL 321 (323)
Q Consensus 311 ~niry~aL~~l 321 (323)
..+|..|...|
T Consensus 372 ~~v~~~Aa~aL 382 (510)
T 3ul1_B 372 FKTQKEAAWAI 382 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887665
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.28 E-value=0.00078 Score=66.21 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=172.5
Q ss_pred HHHHHHHHcCCC-CCch-hhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCCh--
Q psy18014 53 TKILYLINQGEQ-LGTQ-EATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKED-- 122 (323)
Q Consensus 53 ~kli~~~~~G~~-~~~~-e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~-- 122 (323)
..+|..+..|.+ .... --....+.+++++.+++..++.-+--++.+++...++ .++ ++..|..=+.+++.
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~ 201 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST 201 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchh
Confidence 356666766643 1000 0113456788999999999999999999999765433 122 23345555554432
Q ss_pred ---HHHhHH---HHHhhCCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHH
Q psy18014 123 ---LYRAAA---IRALCSIT----DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQE 187 (323)
Q Consensus 123 ---~ir~lA---Lr~L~~i~----~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~ 187 (323)
.+...| |..++.-. ....+..+.+.+.+.+.+.++.|+..|+.|+..+....++..+ ..++.+.+
T Consensus 202 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 281 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281 (510)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence 233333 34444322 2244677889999999999999999999999999887766543 25778899
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcChhhHHHHHH-----HHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhH
Q psy18014 188 ALNSENVMVQYHALGLLYHIRKSDQLAVTKLVA-----KLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPL 261 (323)
Q Consensus 188 ~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~-----~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
++.+.++.|...++..+..+...+......++. .|.. ..-.++-.+..-...+..+...++.... .-....+
T Consensus 282 lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~--~v~~~g~ 359 (510)
T 3ul1_B 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ--QVVNHGL 359 (510)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTH
T ss_pred hhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH--HHHhcCC
Confidence 999999999999998888876555443333322 1110 0123444444444444444221111100 0001345
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHcccCC-CHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 262 FDYLETCLRHKSETVVYEAAHAIVNLRRT-SARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 262 ~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+..+...|++.+..|..+|+.++..+... ..+. -..++.+|-.+|.++|+.++..+|..|.
T Consensus 360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 67777888899999999999999988531 2222 1467889999999999999999998764
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.26 E-value=0.00014 Score=74.78 Aligned_cols=249 Identities=11% Similarity=0.098 Sum_probs=160.2
Q ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCc-chH-----hhhhhhhhhcCCCChHHHhHHHHHhhCCC-------
Q psy18014 70 ATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAE-DVI-----IVTSSLTKDMTGKEDLYRAAAIRALCSIT------- 136 (323)
Q Consensus 70 ~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~-~~l-----L~iNsl~kDl~~~N~~ir~lALr~L~~i~------- 136 (323)
...++..+...+.+++...|.-....+..+++... +.+ -++..+.+-++|+|+.+|..|+.+++.+.
T Consensus 367 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 44566667778889999999999999999976532 211 25677888889999999999998887654
Q ss_pred -chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC----h----hHHHHHHHHHHHHhcC--CChHHHHHHHHHHH
Q psy18014 137 -DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS----P----DLVKRWVNEVQEALNS--ENVMVQYHALGLLY 205 (323)
Q Consensus 137 -~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~----p----~~v~~~~~~l~~~l~d--~~~~V~~~al~ll~ 205 (323)
.++..+.+.+.+.+++.|. +.||..|+.++..+.+.. + ..++.+++.+...+.+ .++.|...++..+.
T Consensus 447 ~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3457888999999999887 999999999988776532 1 2345677777777774 44677777766666
Q ss_pred HHHhcChhhH----HHHHH----HHhhc-cC-----C----ChH--HHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHH
Q psy18014 206 HIRKSDQLAV----TKLVA----KLTKF-TM-----K----SPY--ATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYL 265 (323)
Q Consensus 206 ~l~~~d~~~~----~~lv~----~L~~~-~~-----~----~~~--~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (323)
.+....+... ..+++ .+... .+ . +++ .+...+..+..+...-+.. ..+....+++.+
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l 602 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS---VEPVADMLMGLF 602 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG---TGGGHHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHH
Confidence 6654433222 22222 22110 00 0 111 2233444443332211110 011356677777
Q ss_pred HHHhcCCCh-hHHHHHHHHHHcccCC----CHHhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 266 ETCLRHKSE-TVVYEAAHAIVNLRRT----SARELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 266 ~~~L~~~~~-aV~~ea~k~i~~l~~~----~~~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
...++..++ .|.-++..++-.+... -...+......+...++++++.+|-.|+..+.
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~ 664 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIA 664 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 777877766 6777766666555321 12345677788888888888889988887653
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.23 E-value=6.5e-05 Score=76.13 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcc-hHhhhhhhhhhc--CCCChHHHhHHHHHhhCCC--chhhHH--HHHHHHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDM--TGKEDLYRAAAIRALCSIT--DTTMIQ--AIERYMK 149 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~-~lL~iNsl~kDl--~~~N~~ir~lALr~L~~i~--~~~~~~--~l~~~v~ 149 (323)
+.|-++++|...+=+.--++..+.. ++ +--+...+.+=+ .|+||+||-.|.-++.++- .|++++ .+.+.+.
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~ 193 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVGS--REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVV 193 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHH
Confidence 4455777777776655555555532 23 234556666666 7778888766655554433 356666 6777777
Q ss_pred HhccCCChHHHHHHHHHHHhhhccChh
Q psy18014 150 QAIVDRNSAVSSAAVVSIFHMTKHSPD 176 (323)
Q Consensus 150 ~~L~d~~~yVRk~A~~~~~kl~~~~p~ 176 (323)
+.|.|++|.|..+|+.++..+.+.+|+
T Consensus 194 ~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 194 HLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 788888888887777777776666654
No 39
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.22 E-value=5.1e-05 Score=82.13 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=160.0
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhcccC-----cch-HhhhhhhhhhcCCCChHHHhHHHHHhhCCC---chhhHHHH
Q psy18014 74 FFAMTKLFQSKDVILRRMVYLGIKELSNIA-----EDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSIT---DTTMIQAI 144 (323)
Q Consensus 74 f~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-----~~~-lL~iNsl~kDl~~~N~~ir~lALr~L~~i~---~~~~~~~l 144 (323)
+..++.-+.++|...|++.--.+....... +.. --++..+.+-+.|+|+.+|..|+++++.+. .++..+.+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445566689999999998866665553221 121 135566777888999999999998887653 44677889
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhhhccChh----------HHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhcCh-
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD----------LVKRWVNEVQEALNS-ENVMVQYHALGLLYHIRKSDQ- 212 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~----------~v~~~~~~l~~~l~d-~~~~V~~~al~ll~~l~~~d~- 212 (323)
.+.+.+++.|.++.||..|+.|+..+....+. ..+.+++.+.+.+.+ .++.+...|+..+.++....+
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999888755432 355778888888884 788999999988888764322
Q ss_pred ---hhHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCC-hhH---HHHHHHHH
Q psy18014 213 ---LAVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKS-ETV---VYEAAHAI 284 (323)
Q Consensus 213 ---~~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~aV---~~ea~k~i 284 (323)
.....++..|... .-.+++.+...++.+..+...-++ .....+++.+...|.+.+ ..+ .++++-.+
T Consensus 168 ~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~------~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 1234555555321 224567777777777666433221 134555666666554432 233 34444444
Q ss_pred HcccCC-CHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 285 VNLRRT-SARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 285 ~~l~~~-~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
...... -...+...+..+...+...++.+|-.|+..+
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 433110 0123467778888888888899998887665
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.15 E-value=0.00019 Score=74.61 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=159.8
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC-------chhhHHHHHHHH
Q psy18014 76 AMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT-------DTTMIQAIERYM 148 (323)
Q Consensus 76 ~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~-------~~~~~~~l~~~v 148 (323)
.+++...|+|...+|-..-.+..+... ++.....-.+..++++.++.+|-.|.-.|-+.. +++.-+.+-..+
T Consensus 17 ~~l~~~~s~d~~~r~~Ae~~L~~~~~~-p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~l 95 (852)
T 4fdd_A 17 QLLKESQSPDTTIQRTVQQKLEQLNQY-PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSEC 95 (852)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 344555788999999999999987543 443322223444567889999988875554332 455667777888
Q ss_pred HHhccCCChHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhh---------HHHH
Q psy18014 149 KQAIVDRNSAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLA---------VTKL 218 (323)
Q Consensus 149 ~~~L~d~~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~---------~~~l 218 (323)
.+++.|+++.||+.|+.++..+...+ |+.-.++++.+.+.+.+.++.+...|+..+..+.+..+.. ...+
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 88899999999999999999987654 3222346677778888889988888888777775543222 3345
Q ss_pred HHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHH----
Q psy18014 219 VAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAR---- 293 (323)
Q Consensus 219 v~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~---- 293 (323)
++.+... .-.++-....-++.+..+....+.. .......+++.+...++..++.|..+|+.++..+....+.
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~---~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH---HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 5555321 1223444444455554443221110 0012346667777777888999999999999887543332
Q ss_pred hHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 294 ELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 294 ~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.+...+..+...+++.++.+|..|+..+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 2356777777888889999999988654
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=6.9e-05 Score=66.16 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=93.3
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhccc-----CcchHhhhhhhhhhcC-CCChHHHhHHHHHhhCCCch------hhHHHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNI-----AEDVIIVTSSLTKDMT-GKEDLYRAAAIRALCSITDT------TMIQAI 144 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~-----~~~~lL~iNsl~kDl~-~~N~~ir~lALr~L~~i~~~------~~~~~l 144 (323)
+.+.+.++|...|+.+...+..+.+. .+..-=+++.|.+=++ |+|+.+|..|+.+++.+... ..++.+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556899999999999888777432 1222234666666664 78889998888888876532 456778
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
.+.|.+.+.|+++.||..|+.++..++...+ ++.+++.+...+.++|+.|...++..+..
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 8889999999999999998888888876543 45677777777888888777777665554
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.12 E-value=0.00014 Score=64.04 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhc-CCCchhHHHHHHHHHHhccc-C----cchHhhhhhhhhhc
Q psy18014 44 NPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ-SKDVILRRMVYLGIKELSNI-A----EDVIIVTSSLTKDM 117 (323)
Q Consensus 44 ~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~-s~d~~lKkl~Ylyl~~~~~~-~----~~~lL~iNsl~kDl 117 (323)
+-+.++.++..+-.+...+..+...+...++..+.+++. .+|..++..+.-.+..++.. . +.+-.++..+.+=+
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 555556788777666654223322234567777888895 88999999888888888642 2 22345788888889
Q ss_pred CCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hh-----HHHHHHHHHHHHhcC
Q psy18014 118 TGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PD-----LVKRWVNEVQEALNS 191 (323)
Q Consensus 118 ~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~-----~v~~~~~~l~~~l~d 191 (323)
.|+++.+|..|..++..+....-.+.+.+.+...+.|++|.||..++-.+..+.... |+ ....+++.+..++.|
T Consensus 108 ~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D 187 (242)
T 2qk2_A 108 KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNE 187 (242)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcC
Confidence 999999998887777766544335778888999999999999999999999876443 43 445789999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy18014 192 ENVMVQYHALGLLYHIR 208 (323)
Q Consensus 192 ~~~~V~~~al~ll~~l~ 208 (323)
.++.|-..|...+..+.
T Consensus 188 ~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 188 PDPTVRDSSAEALGTLI 204 (242)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999888876665554
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.98 E-value=0.00046 Score=66.95 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=159.0
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc--hHh----hhhhhhhhcC-CCChHHHhHHHHHhhCCCch-hhHH-
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED--VII----VTSSLTKDMT-GKEDLYRAAAIRALCSITDT-TMIQ- 142 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~lL----~iNsl~kDl~-~~N~~ir~lALr~L~~i~~~-~~~~- 142 (323)
.....+++++.++|..++.-.-.++..++...+. .++ ++..+.+-+. ++++.+|-.|.++|.++... +...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 3456677888899999888888888888654322 111 2444444443 35888999999988887543 2211
Q ss_pred ----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH---H--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh
Q psy18014 143 ----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL---V--KRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL 213 (323)
Q Consensus 143 ----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~---v--~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~ 213 (323)
...+.+.+.+.+.++.|+..|+-++.++...+++. + ...++.+-+++.+.++.+...+...+..+...++.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 25678888999999999999999999998765442 2 24788899999999988888877777666543322
Q ss_pred h---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHH
Q psy18014 214 A---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAI 284 (323)
Q Consensus 214 ~---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i 284 (323)
. ...++..+... ..+..+....+.+..+.. .++... .-.....++.+...+++.++.+..+|+.++
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~-~~~~~~--~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSV-CSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTT-STTHHH--HHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhc-CcccHH--HHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 1 23444444322 122233233333322211 111000 000124566777778888999999999999
Q ss_pred HcccCCCH--HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 285 VNLRRTSA--RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 285 ~~l~~~~~--~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..+....+ .....++..+..++.++++.++..|...|.
T Consensus 252 ~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp HHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88864321 223567888888999999999988877653
No 44
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.97 E-value=1.1e-05 Score=64.76 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=77.5
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHh
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEAL 189 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l 189 (323)
++.+.+.++|+|+.+|..|++.|+.+..+. .+.+.+.|.|+++.||..|+.++.++-. ++ .++.+.+++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~----a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--ER----AVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH----HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH----HHHHHHHHH
Confidence 456778889999999999999999999875 3667789999999999999999998742 33 455666777
Q ss_pred cCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHH
Q psy18014 190 NSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCML 236 (323)
Q Consensus 190 ~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~l 236 (323)
.|.|+.|...|...|..+. ++.....|+..+. -.+++.....
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--~~~a~~~L~~~l~---d~~~~vr~~A 124 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--GERVRAAMEKLAE---TGTGFARKVA 124 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--SHHHHHHHHHHTT---SCCTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHh---CCCHHHHHHH
Confidence 7999999999887776664 3344444444442 1355554333
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.96 E-value=0.0014 Score=68.15 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=181.9
Q ss_pred HHHHHHHHccCCC-CChHHHHHHHHHHHHHHHcCCCCCchhh--hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCc--
Q psy18014 30 AVLQEARTFNDTP-VNPKKCTHILTKILYLINQGEQLGTQEA--TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAE-- 104 (323)
Q Consensus 30 ~i~qe~~~f~~~~-~~~~k~~~~l~kli~~~~~G~~~~~~e~--s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~-- 104 (323)
.++.-++.+...+ .+..-++.++ ..|++++.+.+.-+... ..+.+.++.++.+.|..+..-+--.+.++....|
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~Av-eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAA-DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHH-HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH-HHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 4444555444333 2333333555 45556666643222112 3456677888888876655444444555543221
Q ss_pred ---------------------------------chHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCchh-hHH-----
Q psy18014 105 ---------------------------------DVII---VTSSLTKDMTGKEDLYRAAAIRALCSITDTT-MIQ----- 142 (323)
Q Consensus 105 ---------------------------------~~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~-~~~----- 142 (323)
..++ ++..|..=+.+++|-+|-.|.++|++|...+ ...
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~ 535 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE 535 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 1111 4566777778999999999999999996542 222
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhc-cChhHH------HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcChhh
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTK-HSPDLV------KRWVNEVQEALNSE-NVMVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~-~~p~~v------~~~~~~l~~~l~d~-~~~V~~~al~ll~~l~~~d~~~ 214 (323)
-..+++.+.|.+.++-+|+.|+-|+.++.. .+|+.+ ...++.+-++|... +....+.|+..|..+...+...
T Consensus 536 Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 246788889999999999999999999875 456643 24567777887744 3455677877777766543221
Q ss_pred ---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHH
Q psy18014 215 ---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285 (323)
Q Consensus 215 ---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~ 285 (323)
+.+|+.-+. -.++..|..-.+.++.+...+.....-. +....+..|..++++.+..+.-+|+.++-
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~---s~~~~Vq~~A~~~L~NLa~~~~~~~~~v--~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLM---EDHLYLTRAAAQCLCNLVMSEDVIKMFE--GNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHTTHHHHHHHHHH---SCCTTHHHHHHHHHHHHTTSHHHHHHHH--SSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhCChHHHHHHH--hccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 234444443 2356677666777766533221110000 01235567778889999999999999999
Q ss_pred cccCCCH----HhH--hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 286 NLRRTSA----REL--APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 286 ~l~~~~~----~~~--~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.++..++ .+. ..++.+|..+|.+++..+|..|+..+.
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9975222 223 368889999999999999999988763
No 46
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.93 E-value=7.6e-05 Score=77.55 Aligned_cols=174 Identities=12% Similarity=0.157 Sum_probs=114.3
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhH---H--HHHHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDL---V--KRWVN 183 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~---v--~~~~~ 183 (323)
.+..+.++|.++++.+|..|++.++.+....+.....+.+.+.|.+.++.||..|+.++.++....+.. + ...++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 357889999999999999999999988777888888999999999999999999999999988754321 1 13455
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHH
Q psy18014 184 EVQEALNS-ENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLF 262 (323)
Q Consensus 184 ~l~~~l~d-~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
.+-+.+.+ .++.+..+|+..|..+...+.. . ..+. ....+
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~----------------------~~i~----------------~~g~I 236 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREG-L----------------------LAIF----------------KSGGI 236 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-H----------------------HHHH----------------HTTHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H----------------------HHHH----------------HcCCH
Confidence 55555553 4777887877776666543110 0 0000 11234
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHcccCCC---HH-h-HhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 263 DYLETCLRHKSETVVYEAAHAIVNLRRTS---AR-E-LAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 263 ~~l~~~L~~~~~aV~~ea~k~i~~l~~~~---~~-~-~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+.|..+|++.++.|..+|+.++..+.... .. . -..++..+..+|.+++..++-.|+..+
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55556667788899999999998885321 11 2 246788888888888777776655443
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.90 E-value=0.00021 Score=65.79 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=103.7
Q ss_pred hhHHHHHH-hhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcC-CCChHHHhHHHHHhhCCC--chhhH
Q psy18014 72 DAFFAMTK-LFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMT-GKEDLYRAAAIRALCSIT--DTTMI 141 (323)
Q Consensus 72 ~lf~~vvk-l~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~-~~N~~ir~lALr~L~~i~--~~~~~ 141 (323)
..++.+++ ++.+++..+|.-.--.+.+++..++. .++ ++..|.+=++ ++++.+|..|+.+|+++. .++-.
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 45566788 99999999999888888888765443 222 3334444444 457899999999999884 33322
Q ss_pred H-----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 142 Q-----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 142 ~-----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
+ ...+.+.+.|.+.++.|++.|+.++..+...+++..+ .+++.+-++|.+.++.|+.+|+..+..+...
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 2 3566888888999999999999999998877776543 3677888899999999999998887777654
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.88 E-value=0.0024 Score=65.77 Aligned_cols=135 Identities=14% Similarity=0.137 Sum_probs=98.2
Q ss_pred hhHHHHHHhhc-------CCCchhHHHHHHHHHHhccc-CcchH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCch----
Q psy18014 72 DAFFAMTKLFQ-------SKDVILRRMVYLGIKELSNI-AEDVI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDT---- 138 (323)
Q Consensus 72 ~lf~~vvkl~~-------s~d~~lKkl~Ylyl~~~~~~-~~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~---- 138 (323)
.+.+.+++.+. +++...|+-..-.+..++.. .+..+ .+.+.+..-++|+++.+|..|+.+++.+...
T Consensus 321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~ 400 (876)
T 1qgr_A 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence 34444555554 34567888777777766543 23332 4567777788899999999999999988752
Q ss_pred ---hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 139 ---TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP------DLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 139 ---~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p------~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
...+.+.+.+.+.+.|+++.||..|+.++.++....+ +.+...++.+...+.|. +.|..++...+..+
T Consensus 401 ~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l 477 (876)
T 1qgr_A 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 2356678889999999999999999999999886543 45667888888888875 77777776555444
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.78 E-value=0.0053 Score=59.35 Aligned_cols=268 Identities=13% Similarity=0.045 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHcCCCCCch--hhhhhHHHHHHhhcC-CCchhHHHHHHHHHHhcccCcc--hHh---hhhhhhhhcCCCC
Q psy18014 50 HILTKILYLINQGEQLGTQ--EATDAFFAMTKLFQS-KDVILRRMVYLGIKELSNIAED--VII---VTSSLTKDMTGKE 121 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~--e~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~~~--~lL---~iNsl~kDl~~~N 121 (323)
..-.+.+..+..+.+.... .....+..+++++.+ +|...++..--.+..++...+. .+. ++..|.+=+++++
T Consensus 35 ~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~ 114 (529)
T 1jdh_A 35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 114 (529)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC
Confidence 3334556666554321100 012456677788764 5888888888888877654322 121 4567777788999
Q ss_pred hHHHhHHHHHhhCCCch-----hhH--HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHh
Q psy18014 122 DLYRAAAIRALCSITDT-----TMI--QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEAL 189 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~~-----~~~--~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l 189 (323)
+.++..|+++|.++... +.+ ....+.+.+.+.++++.++..|+.++..+...+++.-. ..++.+-+++
T Consensus 115 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll 194 (529)
T 1jdh_A 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194 (529)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988432 121 45678899999999999999998888877766665432 2455666666
Q ss_pred cCCCh-HHHHHHHHHHHHHHhcChhh--H--HHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHH
Q psy18014 190 NSENV-MVQYHALGLLYHIRKSDQLA--V--TKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFD 263 (323)
Q Consensus 190 ~d~~~-~V~~~al~ll~~l~~~d~~~--~--~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+.++ .+..++..++..+...+... + ...++.|.. ..-.++-.+...+..+..+....+.. ......++
T Consensus 195 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~i~ 269 (529)
T 1jdh_A 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----EGMEGLLG 269 (529)
T ss_dssp HHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-----SCCHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-----HHHHhHHH
Confidence 66554 55666666666665432211 0 122222221 01124544444555554442222211 12467788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcC--CChhhHHHHHhhhc
Q psy18014 264 YLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSS--PKPVLRFAAVRTLN 322 (323)
Q Consensus 264 ~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s--~~~niry~aL~~l~ 322 (323)
.+...+++.++.|...|+.++.++...++... ..++..+..++.+ .++.++..|++.|.
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 88888999999999999999999975433221 3456777777764 33788888887763
No 50
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.74 E-value=0.0013 Score=68.33 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=155.8
Q ss_pred hhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc--hHh----hhhhhhhhcC-CCChHHHhHHHHHhhCCCch-h---
Q psy18014 71 TDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED--VII----VTSSLTKDMT-GKEDLYRAAAIRALCSITDT-T--- 139 (323)
Q Consensus 71 s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~lL----~iNsl~kDl~-~~N~~ir~lALr~L~~i~~~-~--- 139 (323)
......+++++.++|..+|+-.-..+..++...+. .+. ++..|.+=+. +.|+.+|-.|.++|.++... +
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~ 228 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL 228 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 45667788888999999999888888877653211 111 2333333333 34899999998888875322 1
Q ss_pred -hH-HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 140 -MI-QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 140 -~~-~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
+. ....+.+.+.|.+.++.||+.|+-++.++...+++..+ ..++.+-+++.+.++.+...+..++..+...+.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 11 23567888999999999999999999999876554322 367788899998888877777666655543221
Q ss_pred ---------hhHHHHHHHHhhccCCCh---HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHH
Q psy18014 213 ---------LAVTKLVAKLTKFTMKSP---YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEA 280 (323)
Q Consensus 213 ---------~~~~~lv~~L~~~~~~~~---~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea 280 (323)
..+..|+..+... ..+ |.-+.++..++......+.. .....++.|..++++.+..++..|
T Consensus 309 e~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~~a~~aL~~Ls~~~~~~~~i------~~~g~l~~Ll~lL~~~~~~~~~~a 380 (780)
T 2z6g_A 309 ESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSNKPAI------VEAGGMQALGLHLTDPSQRLVQNC 380 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHTSTTHHHHH------HHTTHHHHHGGGTTCSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHHHHHH------HHhchHHHHHHHHcCCchHHHHHH
Confidence 1223444444321 111 22234444433110000000 012345667777788889999999
Q ss_pred HHHHHcccCCCH--HhHhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 281 AHAIVNLRRTSA--RELAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 281 ~k~i~~l~~~~~--~~~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
+.++..+..... .....++..|..+|.++++.+|..|+..|.
T Consensus 381 ~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 381 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999888853221 234668888888999999999998877663
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.71 E-value=0.0022 Score=56.92 Aligned_cols=171 Identities=14% Similarity=0.117 Sum_probs=137.2
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh-----hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc---Chh
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP-----DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS---DQL 213 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p-----~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~---d~~ 213 (323)
+.-...+.+.|.|+++.|+-+|++++-++.+..| ..++++++.+-.++.+.|--|..+|+-++..+-.+ ++.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3456778899999999999999999999987654 45568999999999999999999999888877655 456
Q ss_pred hHHHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC--
Q psy18014 214 AVTKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-- 290 (323)
Q Consensus 214 ~~~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-- 290 (323)
.+.++...+.. ..-+++..+.+....+..+ .+.. ....+.+++.+.+.+.|.-|.-.+.+.+..+++.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~~------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPLE------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSC------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cccc------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 67788877742 2346778887887777765 3322 3789999999999999999999999999998743
Q ss_pred CHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 291 SARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 291 ~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.+..+.....-+.-||++.|+.++=.||..+
T Consensus 183 D~~i~~~I~~eI~elL~~eD~~l~e~aLd~L 213 (265)
T 3b2a_A 183 DSGHLTLILDEIPSLLQNDNEFIVELALDVL 213 (265)
T ss_dssp SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3467888888888999999999998888765
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00087 Score=59.94 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=111.7
Q ss_pred hhhhhcCCCChHHHhHHHHHhhC-CCc--hhhH------HHHHHHHHHhc-cCCChHHHHHHHHHHHhhhccCh------
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCS-ITD--TTMI------QAIERYMKQAI-VDRNSAVSSAAVVSIFHMTKHSP------ 175 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~-i~~--~~~~------~~l~~~v~~~L-~d~~~yVRk~A~~~~~kl~~~~p------ 175 (323)
.+..-++|+|..-|--|+..|.. +.. +++. ..+...+++.+ .|+|+.||-.|+.|+..+...-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45555677888888877777777 632 1222 45677788888 78888888888888877653222
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCC
Q psy18014 176 DLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTN 255 (323)
Q Consensus 176 ~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~ 255 (323)
...+.+++.+-+.+.|..+.|.-++...+..+... . +|... .
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--------------------------------~---~~~~~---~ 141 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--------------------------------Y---DPLAS---S 141 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--------------------------------S---CTTCT---T
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--------------------------------c---ccccc---C
Confidence 34455677777777787777776655433322221 0 11110 0
Q ss_pred CCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC-C---H---HhH-hhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 256 WSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-S---A---REL-APAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 256 ~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~---~---~~~-~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
...+.+++.|...|+|.++.|..+++.+|..+... . . ..+ ...+..+..++..+++++|=+|..++
T Consensus 142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 01456777777778888888888888888776421 1 1 245 67888888888888888888887765
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.70 E-value=0.0016 Score=67.80 Aligned_cols=257 Identities=12% Similarity=0.125 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHcCC-CCCchh--hhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc--hH--hhhhhhhhhcCCCCh
Q psy18014 50 HILTKILYLINQGE-QLGTQE--ATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED--VI--IVTSSLTKDMTGKED 122 (323)
Q Consensus 50 ~~l~kli~~~~~G~-~~~~~e--~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~l--L~iNsl~kDl~~~N~ 122 (323)
.+. ..+..+..|. +.+... .......++++++|+|..+++-.+-++...+...+- .+ .-+..|.+=+++.|+
T Consensus 266 ~a~-~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~ 344 (810)
T 3now_A 266 RVT-VAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKND 344 (810)
T ss_dssp HHH-HHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCH
T ss_pred HHH-HHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCH
Confidence 454 4555566674 222111 113345688999999999999999888887655322 11 124566666678899
Q ss_pred HHHhHHHHHhhCCCc--------hhh----HHHHHHHHHHhccCC--ChHHHHHHHHHHHhhhccCh---hHHH--HHHH
Q psy18014 123 LYRAAAIRALCSITD--------TTM----IQAIERYMKQAIVDR--NSAVSSAAVVSIFHMTKHSP---DLVK--RWVN 183 (323)
Q Consensus 123 ~ir~lALr~L~~i~~--------~~~----~~~l~~~v~~~L~d~--~~yVRk~A~~~~~kl~~~~p---~~v~--~~~~ 183 (323)
.+|-.|+-+||++.. +.+ ++.+.+.+++.|.++ ++.+|+.|+-|++.|-...+ +++. .+++
T Consensus 345 ~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip 424 (810)
T 3now_A 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424 (810)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHH
Confidence 999999999999852 222 567888899999998 89999999999999976443 2332 4788
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcC-hhh-HHHHHHHHhh---ccCC--ChHHHHHHHH-HHHHHhhhhhcccCCCC
Q psy18014 184 EVQEALNSENVMVQYHALGLLYHIRKSD-QLA-VTKLVAKLTK---FTMK--SPYATCMLIR-IVCKLIEDQNAASGDTN 255 (323)
Q Consensus 184 ~l~~~l~d~~~~V~~~al~ll~~l~~~d-~~~-~~~lv~~L~~---~~~~--~~~~~~~llr-~~~~~~~~~~~~~~~~~ 255 (323)
.+-+++...++.++|.|+..+.-+.... ... ...+ ..+.+ .... .|..-....+ -+..+.
T Consensus 425 ~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l-~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv----------- 492 (810)
T 3now_A 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM-IELAKFAKQHIPEEHELDDVDFINKRITVLA----------- 492 (810)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC-GGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH-HHHHHHhhccCccccccccHHHHHHHHHHHH-----------
Confidence 8889999999999999999888887632 110 0000 01100 0000 1111111111 000010
Q ss_pred CCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 256 WSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 256 ~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
....+..+..+|++.++.|.-+|+.++..+... .+.+ .-++.+|..+|.++++..|-.|..+|.
T Consensus 493 --eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 493 --NEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALA 561 (810)
T ss_dssp --HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred --HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHH
Confidence 123456677778899999999999999999753 3222 457888999999988888888877664
No 54
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.70 E-value=0.011 Score=50.84 Aligned_cols=176 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred HHHhHHHHHhhCCCc--hhhHHHHHHHHHHhccCCChHHH-HHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHH
Q psy18014 123 LYRAAAIRALCSITD--TTMIQAIERYMKQAIVDRNSAVS-SAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYH 199 (323)
Q Consensus 123 ~ir~lALr~L~~i~~--~~~~~~l~~~v~~~L~d~~~yVR-k~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~ 199 (323)
.++.+||+.++.+.. |++.+++.+-+--.+.-..+.=- ..-+-+++.+.+..||+++..++-+..-..-.+|..-.+
T Consensus 47 tV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn 126 (253)
T 2db0_A 47 TVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKIN 126 (253)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceec
Confidence 355555555554432 24444444333333222221111 222333444444455555555555554444445444444
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHH
Q psy18014 200 ALGLLYHIRKSDQLAVTKLVAKLTKF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVY 278 (323)
Q Consensus 200 al~ll~~l~~~d~~~~~~lv~~L~~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ 278 (323)
--.+|.+|.+.+|......++.+... .-++..-...-+.++.....+.+. ....|++.|...|.-.|..|.-
T Consensus 127 ~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~-------yv~PfLprL~aLL~D~deiVRa 199 (253)
T 2db0_A 127 VSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-------YVNPFLPRIINLLHDGDEIVRA 199 (253)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH-------HHGGGHHHHHGGGGCSSHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc-------ccCcchHHHHHHHcCcchhhhH
Confidence 33444555555555444444443211 222323333334444333333332 1445555555555555555555
Q ss_pred HHHHHHHcccCCCHHhHhhHHHHHHHH
Q psy18014 279 EAAHAIVNLRRTSARELAPAVSVLQLF 305 (323)
Q Consensus 279 ea~k~i~~l~~~~~~~~~~~~~~l~~~ 305 (323)
.|+-++.++...++.++......+..|
T Consensus 200 SaVEtL~~lA~~npklRkii~~kl~e~ 226 (253)
T 2db0_A 200 SAVEALVHLATLNDKLRKVVIKRLEEL 226 (253)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 555555555544455444444444444
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.67 E-value=0.0021 Score=64.75 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=158.6
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc--hHh----hhhhhhhhcCC-CChHHHhHHHHHhhCCCch-hhHH-
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED--VII----VTSSLTKDMTG-KEDLYRAAAIRALCSITDT-TMIQ- 142 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~lL----~iNsl~kDl~~-~N~~ir~lALr~L~~i~~~-~~~~- 142 (323)
.....+++++.++|..++.-.-..+..++...+. .++ ++..|.+-+.+ +++.+|-.|.++|.++... +...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 3456677888999999999988888888765432 111 24455555544 4888998888888875532 2111
Q ss_pred ----HHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH----H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh
Q psy18014 143 ----AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV----K-RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL 213 (323)
Q Consensus 143 ----~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v----~-~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~ 213 (323)
...+.+.+.|.+.++.|+..|+.++.++...+++.. + ..++.+-+++.+.++.+...+..+|..+...++.
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 256778889999999999999999999987654322 2 4788899999999988888777777777643322
Q ss_pred h---------HHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHH
Q psy18014 214 A---------VTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAI 284 (323)
Q Consensus 214 ~---------~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i 284 (323)
. +..|+..+... ..+-.+....+.+..+.. .++... .-.....++.+..++++.+..+...|+.++
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~~a~~~L~nLs~-~~~~~~--~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L 248 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSV-CSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTC--CCHHHHHHHHHHHHHHTT-CTTHHH--HHHHTTHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcC--ChHHHHHHHHHHHHHHhc-CcccHH--HHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 23444444322 123233333333332211 111100 000123456677777888899999999999
Q ss_pred HcccCCC--HHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 285 VNLRRTS--ARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 285 ~~l~~~~--~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
..+.... ......++..|..++.++++.++-.|...|
T Consensus 249 ~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 249 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp HHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8885322 123457788888889999999988877665
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.65 E-value=0.0018 Score=69.97 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=127.8
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCC-------chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChh-HHHHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSIT-------DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD-LVKRW 181 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~-------~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~-~v~~~ 181 (323)
++.+...++|+++-+|-.|+..|.+.. +++..+.+.+.+.+.+.|+++.||+.|+.++..+....++ .+..+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345566688999999998887775432 2345667888899999999999999999999999876654 55678
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhcCh-h---------hHHHHHHHHhhc-c-CCChHHHHHHHHHHHHHhhhhhc
Q psy18014 182 VNEVQEALNSENVMVQYHALGLLYHIRKSDQ-L---------AVTKLVAKLTKF-T-MKSPYATCMLIRIVCKLIEDQNA 249 (323)
Q Consensus 182 ~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~-~---------~~~~lv~~L~~~-~-~~~~~~~~~llr~~~~~~~~~~~ 249 (323)
++.+.+.+.|.++.|...|...+..+...-+ . ....+++.|... . -.++-.+..-+..+..+....+.
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 8888888889888887766655555543322 1 234555555321 1 23445666666666655332121
Q ss_pred ccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCC-HHhHhhHHHHHHHHhc
Q psy18014 250 ASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTS-ARELAPAVSVLQLFCS 307 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~-~~~~~~~~~~l~~~L~ 307 (323)
. .......+++.+.+.|.+.++.|.-.|++++-.+.... ...+...+..+...|.
T Consensus 168 ~---l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 168 L---LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp S---CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 1 11235677788888888899999999999998875432 2234444444444443
No 57
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.61 E-value=0.016 Score=58.18 Aligned_cols=268 Identities=13% Similarity=0.037 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHcCCCCCch--hhhhhHHHHHHhhcC-CCchhHHHHHHHHHHhcccCcc--hHh---hhhhhhhhcCCCC
Q psy18014 50 HILTKILYLINQGEQLGTQ--EATDAFFAMTKLFQS-KDVILRRMVYLGIKELSNIAED--VII---VTSSLTKDMTGKE 121 (323)
Q Consensus 50 ~~l~kli~~~~~G~~~~~~--e~s~lf~~vvkl~~s-~d~~lKkl~Ylyl~~~~~~~~~--~lL---~iNsl~kDl~~~N 121 (323)
..-.+.|..+..+...... ....+...+++.+.+ +|...++-.--.+..++...+. .+. ++..|.+=+++++
T Consensus 32 ~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 111 (644)
T 2z6h_A 32 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 111 (644)
T ss_dssp HHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCC
Confidence 4444566666654431100 012455667788776 4888888777777777654322 111 4566777788999
Q ss_pred hHHHhHHHHHhhCCCch------hhH-HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHh
Q psy18014 122 DLYRAAAIRALCSITDT------TMI-QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEAL 189 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~~------~~~-~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l 189 (323)
+.+|-.|+.+|.++... .+. ....+.+.+.|.+.++-++..|+-|+..+...+++.-. ..++.+-+++
T Consensus 112 ~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL 191 (644)
T 2z6h_A 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 191 (644)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH
Confidence 99999999999998533 122 45678899999999999999988888888766665332 2466677777
Q ss_pred cCCC-hHHHHHHHHHHHHHHhcChhh--H--HHHHHHHhh-ccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHH
Q psy18014 190 NSEN-VMVQYHALGLLYHIRKSDQLA--V--TKLVAKLTK-FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFD 263 (323)
Q Consensus 190 ~d~~-~~V~~~al~ll~~l~~~d~~~--~--~~lv~~L~~-~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+.+ ..+..++..++..+....... + ...++.|.. ..-.++-.+...+..+..+....+.. ......++
T Consensus 192 ~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-----~~~~~~i~ 266 (644)
T 2z6h_A 192 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----EGMEGLLG 266 (644)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-----CSCHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-----hhhhhHHH
Confidence 7665 356677777777665432211 0 112222221 11124444545555554442222211 12457788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHcccCCCHHhH-----hhHHHHHHHHhcC-CC-hhhHHHHHhhhc
Q psy18014 264 YLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQLFCSS-PK-PVLRFAAVRTLN 322 (323)
Q Consensus 264 ~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~-----~~~~~~l~~~L~s-~~-~niry~aL~~l~ 322 (323)
.|...|++.++.|...|+.++.++...++... ..++..|..++.+ ++ +.++..|++.|.
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 88888999999999999999999875433211 3467777777765 33 688888887763
No 58
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.36 E-value=0.0023 Score=56.78 Aligned_cols=174 Identities=11% Similarity=0.132 Sum_probs=126.7
Q ss_pred HHHHHccCCCCChHHHH--HHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHh---cccCcchH
Q psy18014 33 QEARTFNDTPVNPKKCT--HILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKEL---SNIAEDVI 107 (323)
Q Consensus 33 qe~~~f~~~~~~~~k~~--~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~---~~~~~~~l 107 (323)
..+..|.......-+.+ -++.++|..|. ......+...+|..++++..++|-.+.==.-=.+..+ .+.+++.+
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRAD--SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33455555443333321 23444444421 1122345668999999999888854321111122222 23355554
Q ss_pred -hhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhh--ccChhHHHHHHHH
Q psy18014 108 -IVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMT--KHSPDLVKRWVNE 184 (323)
Q Consensus 108 -L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~--~~~p~~v~~~~~~ 184 (323)
-++++++.=+.++|+..+=-|.-.++++..-+.+.-+...+-+.+.+++++|+-+|+.++..+- ..+|++++..+++
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999888887765 4568999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHH
Q psy18014 185 VQEALNSENVMVQYHALGLLYHIR 208 (323)
Q Consensus 185 l~~~l~d~~~~V~~~al~ll~~l~ 208 (323)
+.++++..||-+.--|+.++.++-
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988877764
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.31 E-value=0.011 Score=55.91 Aligned_cols=238 Identities=9% Similarity=0.039 Sum_probs=142.6
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhccc-CcchHh-hhhhhhhhcCCCChHHHhHHHHHhhCC------------------C
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNI-AEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSI------------------T 136 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL-~iNsl~kDl~~~N~~ir~lALr~L~~i------------------~ 136 (323)
++..+.++|...|+-.--++..+... .++.+. ....+. + .+.++.+|-.|.-.|-+. .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-N-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-c-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 34556788888999888888887653 344333 333333 2 344778887776555544 2
Q ss_pred chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC-hh-HHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcC-
Q psy18014 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS-PD-LVKRWVNEVQEALNSE--NVMVQYHALGLLYHIRKSD- 211 (323)
Q Consensus 137 ~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~-p~-~v~~~~~~l~~~l~d~--~~~V~~~al~ll~~l~~~d- 211 (323)
+++.-+.+-..+.+.+.+.++.| +.++.++..+.... |+ .-.++++.+.+.+.+. ++.+...|+..+..+.+.-
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 45556667777888899999999 88888888776442 32 1224556666667777 8888888888777775432
Q ss_pred h----hhHHHHHHHHh---hccCCChHHHHHHHHHHHHHhh---hhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHH
Q psy18014 212 Q----LAVTKLVAKLT---KFTMKSPYATCMLIRIVCKLIE---DQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAA 281 (323)
Q Consensus 212 ~----~~~~~lv~~L~---~~~~~~~~~~~~llr~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~ 281 (323)
+ .....+++.+. ...-.++-.+...++.+..++. ..... ......+++.+...+.+.+..|.-.++
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK----ESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS----HHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1 11223333332 1111144455555566554321 11100 000122456666667778888888888
Q ss_pred HHHHcccCCCH----HhHh-hHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 282 HAIVNLRRTSA----RELA-PAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 282 k~i~~l~~~~~----~~~~-~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+++..+....+ ..+. ...+.+...+...+..+|..|+..+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 88877642211 1233 5566666667788889998888754
No 60
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0019 Score=57.76 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHHH-HHHcC-CCCC--chhhhhhHHHHHHhh-cCCCchhHHHHHHHHHHhcc-cC------cchHhhhh
Q psy18014 44 NPKKCTHILTKILY-LINQG-EQLG--TQEATDAFFAMTKLF-QSKDVILRRMVYLGIKELSN-IA------EDVIIVTS 111 (323)
Q Consensus 44 ~~~k~~~~l~kli~-~~~~G-~~~~--~~e~s~lf~~vvkl~-~s~d~~lKkl~Ylyl~~~~~-~~------~~~lL~iN 111 (323)
+-+.+++++..+.. +. .| .++. ..+...++-.+.+.+ .-.|..+.....-.+..++. .. +-+-.+..
T Consensus 29 ~w~eRk~al~~L~~~~~-~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVL-SQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp SHHHHHHHHHHHHHHTG-GGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-hcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 55555688887777 44 34 1221 223345655666777 46677776666666666543 11 22334566
Q ss_pred hhhhhcCCCChHHHhH---HHHHhhCCCchh----hHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh---h----H
Q psy18014 112 SLTKDMTGKEDLYRAA---AIRALCSITDTT----MIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP---D----L 177 (323)
Q Consensus 112 sl~kDl~~~N~~ir~l---ALr~L~~i~~~~----~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p---~----~ 177 (323)
.+..=+.+..+.+|.. ||.+++.-.++. ..+.+.+.+..++.|++|.||..|+.++.++....+ + .
T Consensus 108 ~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~ 187 (249)
T 2qk1_A 108 PLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187 (249)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 6766677777777655 444555433221 145677777888888888998888888888876554 2 3
Q ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q psy18014 178 V-KRWVNEVQEALNSENVMVQYHALGLLYHIR 208 (323)
Q Consensus 178 v-~~~~~~l~~~l~d~~~~V~~~al~ll~~l~ 208 (323)
+ +.+++.+..++.|.++.|-..|...+..+.
T Consensus 188 l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4 567888888888888888888766555543
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.25 E-value=0.0074 Score=55.41 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=74.9
Q ss_pred HHHH-hccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcC-CChHHHHHHHHHHHHHHhcChhhHHHHH
Q psy18014 147 YMKQ-AIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNS-ENVMVQYHALGLLYHIRKSDQLAVTKLV 219 (323)
Q Consensus 147 ~v~~-~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d-~~~~V~~~al~ll~~l~~~d~~~~~~lv 219 (323)
++.+ .|.++++.||..|+.|+..+...+|+.-. ..++.+-.++.+ .++.|...|+..+..+..+++.....
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~-- 162 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ-- 162 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH--
Confidence 3444 67777777777777777777776664322 244455555552 34555555554444444332211100
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHH---h--
Q psy18014 220 AKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAR---E-- 294 (323)
Q Consensus 220 ~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~---~-- 294 (323)
+. ....+..|..+|++.+..|.-+|+.++.++...++. .
T Consensus 163 -----------------------~~-------------~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 163 -----------------------FL-------------RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp -----------------------HH-------------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred -----------------------HH-------------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 00 011233444445566777777777777766421111 1
Q ss_pred HhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 295 LAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 295 ~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
-..++.+|-.+|.++++.++-.|++.|
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL 233 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGAL 233 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHH
Confidence 245666777777777777777777665
No 62
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.92 E-value=0.26 Score=51.95 Aligned_cols=226 Identities=13% Similarity=0.097 Sum_probs=137.5
Q ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHh--cccCcchH-hhhhhhhhhcCCCChHHHhHHHHHhh--CCCchhhHHHHHHH
Q psy18014 73 AFFAMTKLFQSKDVILRRMVYLGIKEL--SNIAEDVI-IVTSSLTKDMTGKEDLYRAAAIRALC--SITDTTMIQAIERY 147 (323)
Q Consensus 73 lf~~vvkl~~s~d~~lKkl~Ylyl~~~--~~~~~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~--~i~~~~~~~~l~~~ 147 (323)
++-.+...+..++...+.+.-+.+... +..+++++ -..+.+..|. ..+..|+ |--.|+ .++.++-++.+.+.
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~-aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRG-LAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHH-HHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHH-HHHHHHhhhCCChHHHHHHHHH
Confidence 444455666766666665665555543 44555543 2333444332 2344555 444555 77899999888876
Q ss_pred HHHhccCCChHHHHHHHHHHHhhh--ccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhc
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMT--KHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKF 225 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~--~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~ 225 (323)
+.. +.+|+||..|+++..--| -.++..+++++..+. .|.+..|...|+..+-.+...++....+++..|...
T Consensus 550 L~~---~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 550 MLA---SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV---SDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHH---CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHh---CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 665 789999999988776555 456777766655554 567777887777777777666666677777766543
Q ss_pred cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC-CHH---hHhhHHHH
Q psy18014 226 TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT-SAR---ELAPAVSV 301 (323)
Q Consensus 226 ~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~-~~~---~~~~~~~~ 301 (323)
.+|..-.-..--+... .... -....++.|.+.+.-+++-|...|+..+=.+... +.. -+......
T Consensus 624 --~d~~VR~gAalALGli---~aGn------~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~ 692 (963)
T 4ady_A 624 --HNAHVRCGTAFALGIA---CAGK------GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKN 692 (963)
T ss_dssp --SCHHHHHHHHHHHHHH---TSSS------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHh---ccCC------CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 2443221111111211 1111 1467888999988889999999999887666521 112 23334444
Q ss_pred HHHHhc--CCChhhHHHHH
Q psy18014 302 LQLFCS--SPKPVLRFAAV 318 (323)
Q Consensus 302 l~~~L~--s~~~niry~aL 318 (323)
+..+.. +.|++.+|.|.
T Consensus 693 L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 693 FLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp HHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHH
Confidence 445554 35788998764
No 63
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.86 E-value=0.15 Score=47.80 Aligned_cols=200 Identities=17% Similarity=0.161 Sum_probs=123.9
Q ss_pred CCChHHHhHHHHHhhCCC--c---hhhH---HHHHHHHHHhccCCChHHHHHHHHHHHhhhcc-Chh---HHH--HHHHH
Q psy18014 119 GKEDLYRAAAIRALCSIT--D---TTMI---QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH-SPD---LVK--RWVNE 184 (323)
Q Consensus 119 ~~N~~ir~lALr~L~~i~--~---~~~~---~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~-~p~---~v~--~~~~~ 184 (323)
+.|+.++-.|..+|.++. . +..+ ....+.+.+.|.+.++.|+..|+-++..|-.. +++ .+. ..++.
T Consensus 95 ~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~ 174 (354)
T 3nmw_A 95 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHH
Confidence 346777777766666653 2 2222 34588899999999999999999999888753 333 222 25777
Q ss_pred HHHH-hcCCChHHHHHHHHHHHHHHhcChhh----------HHHHHHHHhhccCCChH--HH---HHHHHHHHHHhhhhh
Q psy18014 185 VQEA-LNSENVMVQYHALGLLYHIRKSDQLA----------VTKLVAKLTKFTMKSPY--AT---CMLIRIVCKLIEDQN 248 (323)
Q Consensus 185 l~~~-l~d~~~~V~~~al~ll~~l~~~d~~~----------~~~lv~~L~~~~~~~~~--~~---~~llr~~~~~~~~~~ 248 (323)
+-++ +...++.+..+|+.++..+...++.. +..|+..|... -.++| .+ +-.|+.++.++..++
T Consensus 175 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~ 253 (354)
T 3nmw_A 175 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNE 253 (354)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCH
Confidence 7775 45677888888888888887633211 12233333211 11111 11 233444443211112
Q ss_pred cccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 249 AASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+.-.. -.....+..|...|++.+..+.-+|+.++..+...+++. -..++.+|..+|.+++..+|-.|...|
T Consensus 254 ~~~~~--i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 254 DHRQI--LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HHHHH--HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHH--HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 11000 001234677777888999999999999999997423322 256789999999999999998766554
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.12 Score=44.32 Aligned_cols=173 Identities=12% Similarity=0.146 Sum_probs=130.7
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHhcChhhHHHHHH
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALG-LLYHIRKSDQLAVTKLVA 220 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~-ll~~l~~~d~~~~~~lv~ 220 (323)
+.+.+.+...|.|--=.|+|+|+.-+.-+.+-.||+.+.+...+--++......=....++ .+-.+.+..|.-..+.|+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 3455667777888878899999999989999999999988888888887766432222221 233344555677788888
Q ss_pred HHh-hccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHH
Q psy18014 221 KLT-KFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAV 299 (323)
Q Consensus 221 ~L~-~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~ 299 (323)
.+. .++..+|-..+.+=..+..+...+|+. ...+..-+.+.|.+.|..=-+.|.+.|-.++.++........
T Consensus 111 ~lfanyrigd~kikIn~~yaLeeIaranP~l-------~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfL 183 (253)
T 2db0_A 111 VLFANYRIGDEKTKINVSYALEEIAKANPML-------MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL 183 (253)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGH
T ss_pred HHHHHHhcCCccceecHHHHHHHHHHhChHH-------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcch
Confidence 775 446778876666655555555557765 678888888888899999999999999999887778888888
Q ss_pred HHHHHHhcCCChhhHHHHHhhh
Q psy18014 300 SVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 300 ~~l~~~L~s~~~niry~aL~~l 321 (323)
..|..+|..+|..+|-.|..+|
T Consensus 184 prL~aLL~D~deiVRaSaVEtL 205 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEAL 205 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHH
Confidence 8888889888888888887765
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.80 E-value=0.066 Score=56.42 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=37.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 263 DYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 263 ~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
..+.-++++.++.|.+.|+-++=.+....+ ...++..|..+...+|..+|..|+-.|
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 333334467888888888877654432111 255666777888888888887777554
No 66
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.65 E-value=0.15 Score=49.60 Aligned_cols=200 Identities=17% Similarity=0.152 Sum_probs=123.8
Q ss_pred CChHHHhHHHHHhhCCC---c--hhhH---HHHHHHHHHhccCCChHHHHHHHHHHHhhhcc-Chh---HHH--HHHHHH
Q psy18014 120 KEDLYRAAAIRALCSIT---D--TTMI---QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH-SPD---LVK--RWVNEV 185 (323)
Q Consensus 120 ~N~~ir~lALr~L~~i~---~--~~~~---~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~-~p~---~v~--~~~~~l 185 (323)
.|+.++-.|..+|.++. . +..+ ....+.+.+.|.+.++.|+..|+-++..|-.. +++ .+. ..++.+
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 46667766666555543 2 2233 34588999999999999999999999988763 333 232 367777
Q ss_pred HHH-hcCCChHHHHHHHHHHHHHHhcChhh----------HHHHHHHHhhccCCChH--HH---HHHHHHHHHHhhhhhc
Q psy18014 186 QEA-LNSENVMVQYHALGLLYHIRKSDQLA----------VTKLVAKLTKFTMKSPY--AT---CMLIRIVCKLIEDQNA 249 (323)
Q Consensus 186 ~~~-l~d~~~~V~~~al~ll~~l~~~d~~~----------~~~lv~~L~~~~~~~~~--~~---~~llr~~~~~~~~~~~ 249 (323)
-++ +...++.+..+|+.+++.+...++.. +.-|+..|... -.++| .+ +-.|+.++.++..+++
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 370 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNED 370 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC-CSSSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHhcccCCHH
Confidence 776 45567889999998888887632211 12333333221 11222 22 2334444322111221
Q ss_pred ccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHHh-----HhhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 250 ASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARE-----LAPAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~-----~~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
.-.. -.....+..|...|++.+..|.-+|+.++..+...+++. -..++.+|..+|.++++.++-.|...|.
T Consensus 371 ~~~~--i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 371 HRQI--LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp HHHH--HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHH--HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1000 001234566777888999999999999999997323322 2467899999999999999988776653
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.63 E-value=0.58 Score=46.84 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHcC---CCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCC
Q psy18014 50 HILTKILYLINQG---EQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGK 120 (323)
Q Consensus 50 ~~l~kli~~~~~G---~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~ 120 (323)
..|.-+......| -.|-+.+ ...+|+++.+.|..++.-.=-++.+++...++ .+. +|..|.+=|.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~----i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~ 102 (584)
T 3l6x_A 27 GSLASLDSLRKGGPPPPNWRQPE----LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP 102 (584)
T ss_dssp -------------CCCCCCCCCC----HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred chHHHHHHHHhcCCCCCCccccc----HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC
Confidence 6666666665543 2344333 34557889999999988777778777653322 222 577888889999
Q ss_pred ChHHHhHHHHHhhCCCc---hhhHHH-----HHHHHHHhccC-CChHHHHHHHHHHHhhhccC--h-hHHHHHHHHHHHH
Q psy18014 121 EDLYRAAAIRALCSITD---TTMIQA-----IERYMKQAIVD-RNSAVSSAAVVSIFHMTKHS--P-DLVKRWVNEVQEA 188 (323)
Q Consensus 121 N~~ir~lALr~L~~i~~---~~~~~~-----l~~~v~~~L~d-~~~yVRk~A~~~~~kl~~~~--p-~~v~~~~~~l~~~ 188 (323)
|+.++-.|..+|.+|.. ++--.. .++++.+.|.+ .++.+++.|+-|+..|-... . .+++..++.+-++
T Consensus 103 ~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~L 182 (584)
T 3l6x_A 103 KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182 (584)
T ss_dssp SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHH
Confidence 99999999999988875 444333 35667777775 67889999998888876422 1 2444445555554
Q ss_pred h------------------cCCChHHHHHHHHHHHHHHhcChhh---H-------HHHHHHHhhc---cCCChHHHH---
Q psy18014 189 L------------------NSENVMVQYHALGLLYHIRKSDQLA---V-------TKLVAKLTKF---TMKSPYATC--- 234 (323)
Q Consensus 189 l------------------~d~~~~V~~~al~ll~~l~~~d~~~---~-------~~lv~~L~~~---~~~~~~~~~--- 234 (323)
+ ...++.|..+|..+|..+...++.. + ..|+..+... .-.+.-.+-
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 4 1235789999999998887654321 1 1233333210 111211111
Q ss_pred HHHHHHHHHhh-hhhcccC--------------CCCCCchh-----HHHHHHHHhc-CCChhHHHHHHHHHHcccCCC-H
Q psy18014 235 MLIRIVCKLIE-DQNAASG--------------DTNWSNSP-----LFDYLETCLR-HKSETVVYEAAHAIVNLRRTS-A 292 (323)
Q Consensus 235 ~llr~~~~~~~-~~~~~~~--------------~~~~~~~~-----~~~~l~~~L~-~~~~aV~~ea~k~i~~l~~~~-~ 292 (323)
-.|+-++.... +-|..+. ...+..+. .+..+-.+|+ +.++.+.-.|+.++.++.... +
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 11222221110 0010000 00011222 2344445554 567899999999998885321 1
Q ss_pred ------HhH--hhHHHHHHHHhcCCChhhHHHHHhhhc
Q psy18014 293 ------REL--APAVSVLQLFCSSPKPVLRFAAVRTLN 322 (323)
Q Consensus 293 ------~~~--~~~~~~l~~~L~s~~~niry~aL~~l~ 322 (323)
..+ ..+...|..+|.+++..++..|...|.
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~ 380 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122 477899999999999999988877653
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.54 E-value=0.34 Score=46.60 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=97.8
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcCCCChHHHhHHHHHhhCCCc--hhhHHHH---
Q psy18014 76 AMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMTGKEDLYRAAAIRALCSITD--TTMIQAI--- 144 (323)
Q Consensus 76 ~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~~~N~~ir~lALr~L~~i~~--~~~~~~l--- 144 (323)
.+++++.+.|...+.-.--++..++..++. .+. ++..|.+=+.++|+.++-.|..+|.++.. ++.-..+
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~ 85 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 457778888888888888888887654333 222 36678888889999999888888887753 5665555
Q ss_pred --HHHHHHhcc-CCChHHHHHHHHHHHhhhccC--hh-HHHHHHHHHHHHhc--------C--------CChHHHHHHHH
Q psy18014 145 --ERYMKQAIV-DRNSAVSSAAVVSIFHMTKHS--PD-LVKRWVNEVQEALN--------S--------ENVMVQYHALG 202 (323)
Q Consensus 145 --~~~v~~~L~-d~~~yVRk~A~~~~~kl~~~~--p~-~v~~~~~~l~~~l~--------d--------~~~~V~~~al~ 202 (323)
.+++.+.|. +.++.++..|+-++..+.... .+ +++..++.+-+++. + .++.|..+|..
T Consensus 86 G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~ 165 (457)
T 1xm9_A 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165 (457)
T ss_dssp TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHH
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHH
Confidence 578889998 889999999999999887542 22 34456677777772 1 24667778888
Q ss_pred HHHHHHhc
Q psy18014 203 LLYHIRKS 210 (323)
Q Consensus 203 ll~~l~~~ 210 (323)
.|..+...
T Consensus 166 aL~nLs~~ 173 (457)
T 1xm9_A 166 CLRNLSSA 173 (457)
T ss_dssp HHHHHTTS
T ss_pred HHHHHccC
Confidence 88877654
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.52 E-value=0.62 Score=44.69 Aligned_cols=248 Identities=10% Similarity=0.042 Sum_probs=144.1
Q ss_pred hhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcc---hHh---hhhhhhhhcC-CCChHHHhHHHHHhhCCCch-----h
Q psy18014 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAED---VII---VTSSLTKDMT-GKEDLYRAAAIRALCSITDT-----T 139 (323)
Q Consensus 72 ~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~---~lL---~iNsl~kDl~-~~N~~ir~lALr~L~~i~~~-----~ 139 (323)
...+.+++++.+++..+++-.--.+.+++..+++ .+. ++..|.+=+. ++++.++-.|..+|+++... .
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence 4566788999999999999988889988765333 222 2556777777 78999998888888766432 2
Q ss_pred hHHHHHHHHHHhcc--------C--------CChHHHHHHHHHHHhhhccChhHHH------HHHHHHHHHhcC------
Q psy18014 140 MIQAIERYMKQAIV--------D--------RNSAVSSAAVVSIFHMTKHSPDLVK------RWVNEVQEALNS------ 191 (323)
Q Consensus 140 ~~~~l~~~v~~~L~--------d--------~~~yVRk~A~~~~~kl~~~~p~~v~------~~~~~l~~~l~d------ 191 (323)
+++...+++.+.+. + .++.|.+.|+-++..+... |+... ..++.+-.++.+
T Consensus 124 i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 45567778888882 2 3577888999999988865 54332 234444444442
Q ss_pred CChHHHHHHHHHHHHHHhc----Ch-------------------------------------------------------
Q psy18014 192 ENVMVQYHALGLLYHIRKS----DQ------------------------------------------------------- 212 (323)
Q Consensus 192 ~~~~V~~~al~ll~~l~~~----d~------------------------------------------------------- 212 (323)
.+..++-+++..+..+... .+
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 2334555555554443210 00
Q ss_pred hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCC-CC--CchhHHHHHHHHhcCCChhHHHHHHHHHHcccC
Q psy18014 213 LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDT-NW--SNSPLFDYLETCLRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 213 ~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~ 289 (323)
..+..++.-|... .+|..+..-...+..+...+...+... .. .....++.|..+|++.+.-|..+|+.++..++.
T Consensus 283 ~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 283 DAIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 0011111111110 122222222222222211000000000 00 013456778888999999999999999999865
Q ss_pred CCH--H-hHhhHHHHHHHHhcCCCh------hhHHHHHhhhc
Q psy18014 290 TSA--R-ELAPAVSVLQLFCSSPKP------VLRFAAVRTLN 322 (323)
Q Consensus 290 ~~~--~-~~~~~~~~l~~~L~s~~~------niry~aL~~l~ 322 (323)
.+. . +...++.+|-.+|.++++ ++..+++++++
T Consensus 361 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 321 1 235678888889998765 56677777653
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.34 E-value=0.44 Score=50.09 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCCchhHHHHHHHHHHhccc---Cc----------ch-HhhhhhhhhhcCCC---ChHHHhHHHHHhhCCCc---hhhHH
Q psy18014 83 SKDVILRRMVYLGIKELSNI---AE----------DV-IIVTSSLTKDMTGK---EDLYRAAAIRALCSITD---TTMIQ 142 (323)
Q Consensus 83 s~d~~lKkl~Ylyl~~~~~~---~~----------~~-lL~iNsl~kDl~~~---N~~ir~lALr~L~~i~~---~~~~~ 142 (323)
++|-..|.-+++.+..+++. .+ +. -+.++.+..+++++ +|.+|+-|+.+++.+.. ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 67778888899988888532 11 22 23455666677777 99999999999998754 47889
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhc
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTK 172 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~ 172 (323)
.+.+.+.++|.|+++-||-.|+.|+.++..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999775
No 71
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.024 Score=50.88 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=64.9
Q ss_pred hhHHHHH-HhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC---------chhhH
Q psy18014 72 DAFFAMT-KLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT---------DTTMI 141 (323)
Q Consensus 72 ~lf~~vv-kl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~---------~~~~~ 141 (323)
.+.+.++ |++.+.+...|.-..-.+..+.........+...+..=+++.||.+|.-++..|+.+. ....+
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l 181 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL 181 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH
Confidence 3444433 5677777777766555555444322111222345555667888888888887776532 22345
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p 175 (323)
..+.+.+.+++.|+++-||..|.-++..+|+...
T Consensus 182 ~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 182 PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 6677778888888888888888888888887554
No 72
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.18 E-value=0.37 Score=45.01 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=125.4
Q ss_pred cCCCChHHHhHHHHHhhCCCchhhHHH------HHHHHHHhcc-----------CCChHHHHHHHHHHHhhhccCh---h
Q psy18014 117 MTGKEDLYRAAAIRALCSITDTTMIQA------IERYMKQAIV-----------DRNSAVSSAAVVSIFHMTKHSP---D 176 (323)
Q Consensus 117 l~~~N~~ir~lALr~L~~i~~~~~~~~------l~~~v~~~L~-----------d~~~yVRk~A~~~~~kl~~~~p---~ 176 (323)
.-.|++...+.|+++|.++...+-... ..+++.+.|. +.++.+++.|+.++..+...++ .
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566777788999888875543221 2344445542 2358899999999999987664 2
Q ss_pred HH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc-Chh---h------HHHHHHHHhhccCCChHHHHHHHHHHHHH
Q psy18014 177 LV---KRWVNEVQEALNSENVMVQYHALGLLYHIRKS-DQL---A------VTKLVAKLTKFTMKSPYATCMLIRIVCKL 243 (323)
Q Consensus 177 ~v---~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~-d~~---~------~~~lv~~L~~~~~~~~~~~~~llr~~~~~ 243 (323)
.+ ...++.+-++|.+.++.|+.+|..+|..+... +.. . +..|++.|... .++-.+...+..+..+
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~--~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 33 13588899999999999999999888888764 221 1 24455544322 2444444444444433
Q ss_pred hhhhhcccCCCCCCchhHHHHHHHHhcCCCh----hHHHHHHHHHHcccC---CCHHhH-----hhHHHHHHHHhcCCCh
Q psy18014 244 IEDQNAASGDTNWSNSPLFDYLETCLRHKSE----TVVYEAAHAIVNLRR---TSAREL-----APAVSVLQLFCSSPKP 311 (323)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----aV~~ea~k~i~~l~~---~~~~~~-----~~~~~~l~~~L~s~~~ 311 (323)
....++..... -.....+..|...|++.++ .|+-+|+.++..+.. ..++.. ..++..|..+|.+++.
T Consensus 199 s~~~~~nk~~i-~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 199 SAHCTENKADI-CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HTTCHHHHHHH-HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HccChhhhHHH-HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 21011000000 0023456677777776655 488888888887763 223222 3578899999999999
Q ss_pred hhHHHHHhhhc
Q psy18014 312 VLRFAAVRTLN 322 (323)
Q Consensus 312 niry~aL~~l~ 322 (323)
.++--|..+|.
T Consensus 278 ~v~~~A~~aL~ 288 (354)
T 3nmw_A 278 TIVSNACGTLW 288 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888777653
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.12 Score=46.25 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=106.9
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHH---------HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChh-----
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK---------RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQL----- 213 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~---------~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~----- 213 (323)
+.+-|.|++=-.|+.|+-.+.+++...+.... +....+...+.|.|..|+..++.++..+...-+.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56789999999999999999999876653321 2345677888999999999998887776543211
Q ss_pred -----hHHHHHHHHh-hc-cCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHc
Q psy18014 214 -----AVTKLVAKLT-KF-TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN 286 (323)
Q Consensus 214 -----~~~~lv~~L~-~~-~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~ 286 (323)
....+++.+. +. +-..+-....-+..+..+..... ..+.+.+.+.+.+.+.|+-|..+|+..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--------SITQSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1122333332 21 11223222233333332221111 146677888889999999999999998876
Q ss_pred cc------CCCH-HhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 287 LR------RTSA-RELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 287 l~------~~~~-~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
+- ..++ ..+..+...+..++.++|+++|=+|...+
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 52 1122 23456777888899999999999998765
No 74
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.73 E-value=0.043 Score=49.58 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=72.6
Q ss_pred chHhhhhhhhhhcCCCChHHHhHHH---HHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHH
Q psy18014 105 DVIIVTSSLTKDMTGKEDLYRAAAI---RALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW 181 (323)
Q Consensus 105 ~~lL~iNsl~kDl~~~N~~ir~lAL---r~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~ 181 (323)
|+-..+..|.-=+.|+++-+|-.+- +.++.+.++ +.+.+++.+++.|+|+-+|-.++-.+..++..+.--..+.
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~ 205 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKS 205 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444455666667777777776654 344443333 3355666677888888888877777777664442112345
Q ss_pred H---HHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy18014 182 V---NEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKL 222 (323)
Q Consensus 182 ~---~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L 222 (323)
+ +.+-.++.|+|+.|--+|+..+.++-.+-+..+.+.+..|
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L 249 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRM 249 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCC
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 6 7788888888888888887777666555555565666543
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.59 E-value=0.59 Score=45.31 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHcccC
Q psy18014 262 FDYLETCLRHKSETVVYEAAHAIVNLRR 289 (323)
Q Consensus 262 ~~~l~~~L~~~~~aV~~ea~k~i~~l~~ 289 (323)
++.|..+|++.+..+..+|+.++..+..
T Consensus 423 I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 423 VSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 3445555666777777777777776653
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.40 E-value=0.43 Score=50.17 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHHhcccC-cchH-hhhhhhhhhcC------CCChHHHhHHHHHhhCCCc---------h------hhHH
Q psy18014 86 VILRRMVYLGIKELSNIA-EDVI-IVTSSLTKDMT------GKEDLYRAAAIRALCSITD---------T------TMIQ 142 (323)
Q Consensus 86 ~~lKkl~Ylyl~~~~~~~-~~~l-L~iNsl~kDl~------~~N~~ir~lALr~L~~i~~---------~------~~~~ 142 (323)
...|+-+.-++..++..- +.++ .+.+.+..=++ ++|...|=.||.+++.+.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 356666666666665532 2232 22222222222 5567888888887776621 1 5666
Q ss_pred HHHHHHHHhccCC---ChHHHHHHHHHHHhhhcc-ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 143 AIERYMKQAIVDR---NSAVSSAAVVSIFHMTKH-SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 143 ~l~~~v~~~L~d~---~~yVRk~A~~~~~kl~~~-~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
.+...|...|.|+ +|+||.+|+.++++.... .|+..+..++.+-..+.|.++.|..+|..++..+..
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 6667777788888 999999999999987654 467777888888888888888898888777666554
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.33 Score=50.06 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=99.4
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchh-----hH-HHHHHHHHHhccCCChH---HHHHHHHHHHhhh-ccChhHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTT-----MI-QAIERYMKQAIVDRNSA---VSSAAVVSIFHMT-KHSPDLV 178 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~-----~~-~~l~~~v~~~L~d~~~y---VRk~A~~~~~kl~-~~~p~~v 178 (323)
++..|..-+.++++-+|..|.+++.++.... ++ +-..+++.+.+.+.++. +|..|+-++.++. ..+|+.+
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445666666777777777777777765432 22 33456666666666544 6777777777765 3445543
Q ss_pred H------HHHHHHHHHhcC-CC------------h-HHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHH
Q psy18014 179 K------RWVNEVQEALNS-EN------------V-MVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIR 238 (323)
Q Consensus 179 ~------~~~~~l~~~l~d-~~------------~-~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr 238 (323)
= ..++-+-++|.. .+ + .-.+.|+..|.-+...+.... +-.+. +
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~--------------E~~r~---~ 600 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDG--------------EEVCK---H 600 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHH--------------HHHHH---H
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccc--------------hHHHH---H
Confidence 0 233444444441 00 0 113344433333332211000 00000 0
Q ss_pred HHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCHH---hH-----hh---HHHHHHHHhc
Q psy18014 239 IVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAR---EL-----AP---AVSVLQLFCS 307 (323)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~---~~-----~~---~~~~l~~~L~ 307 (323)
++. ....+..|..+|.+.+..|.-+|+.+++.+...+.. .+ .+ ...+|..++.
T Consensus 601 Ii~----------------~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~ 664 (778)
T 3opb_A 601 IVS----------------TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ 664 (778)
T ss_dssp HHH----------------SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred HHH----------------hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc
Confidence 000 013456777778888999999999999999754322 12 12 2667888899
Q ss_pred CCChhhHHHHHhhh
Q psy18014 308 SPKPVLRFAAVRTL 321 (323)
Q Consensus 308 s~~~niry~aL~~l 321 (323)
++|..+|-+|...+
T Consensus 665 s~D~~~r~AAagAL 678 (778)
T 3opb_A 665 LSDVESQRAVAAIF 678 (778)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999887665
No 78
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.70 E-value=0.041 Score=49.72 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchHhhhhhhhhhcCCCChH
Q psy18014 46 KKCTHILTKILYLIN-QGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVIIVTSSLTKDMTGKEDL 123 (323)
Q Consensus 46 ~k~~~~l~kli~~~~-~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL~iNsl~kDl~~~N~~ 123 (323)
.++-+.+..++..+. .|+.+++.|++.+.+.++.=+.-..-.+|.-+.-.+..+... ++.- +...+.+=++|.|.-
T Consensus 105 ~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~--v~~~l~~g~ksKN~R 182 (266)
T 2of3_A 105 IKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLK--MTPMLLDALKSKNAR 182 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHccCCHH
Confidence 344455555444433 244566666666666655555555555666665555554332 2221 111223344666777
Q ss_pred HHhHHHHHhhCCCchhh--HHHHH---HHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHH
Q psy18014 124 YRAAAIRALCSITDTTM--IQAIE---RYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWV 182 (323)
Q Consensus 124 ir~lALr~L~~i~~~~~--~~~l~---~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~ 182 (323)
.|.-.|..+.++....= -.... +.|.+.+.|+++-||.+|+-|+..+|....|-+.+.+
T Consensus 183 ~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 183 QRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777766666543210 11223 6667777777777777777777777766666554433
No 79
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.69 E-value=1.3 Score=39.57 Aligned_cols=138 Identities=12% Similarity=0.149 Sum_probs=97.0
Q ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhh
Q psy18014 30 AVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIV 109 (323)
Q Consensus 30 ~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~ 109 (323)
.+..-++....... ..|+ +.|+++=-+...++. .....++..++.+...++.++||.+=-|+....
T Consensus 16 ~v~~lln~A~~~~~-~~kl-~~L~qa~el~~~~dp---~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~--------- 81 (257)
T 3gs3_A 16 KVVDWCNELVIASP-STKC-ELLAKVQETVLGSCA---ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC--------- 81 (257)
T ss_dssp HHHHHHHHHTTCCH-HHHH-HHHHHHHHHHTTTTG---GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhhhcCc-HHHH-HHHHHHHHHHHccCH---hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---------
Confidence 33433565555433 5666 999999888887754 234677778888877899999999988876443
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhcc-------Chh---HHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH-------SPD---LVK 179 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~-------~p~---~v~ 179 (323)
.+ .++++..+.+.+...+.|.+|.|-|.|+.|+..+|+. +|. ..+
T Consensus 82 ----~~---------------------k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 82 ----KV---------------------KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp ----HH---------------------CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred ----HH---------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 11 4578888889999999999999999999998887742 222 222
Q ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 180 -------RWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 180 -------~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
.+.+.+-.+....|.+|-.+++-++..
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 234455556667778888887755444
No 80
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.48 E-value=1.6 Score=44.08 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=135.5
Q ss_pred HhhcCCCchhHHHHHHHHHHhccc-Ccc----hH-hhhhhhhhhcCCCChHHHhHHHHHhhCCCchh-------------
Q psy18014 79 KLFQSKDVILRRMVYLGIKELSNI-AED----VI-IVTSSLTKDMTGKEDLYRAAAIRALCSITDTT------------- 139 (323)
Q Consensus 79 kl~~s~d~~lKkl~Ylyl~~~~~~-~~~----~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~------------- 139 (323)
++-.+.-++.||=.-+.++.+++. +.+ ++ -.+++|++|-.| .+.+++ +|-+|+.+..++
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D-~e~v~~-~LetL~~l~~~~~~~~~~~~~~~~~ 106 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSD-SEIIGY-ALDTLYNIISNDEEEEVEENSTRQS 106 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTC-HHHHHH-HHHHHHHHHCCC-------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccccc-HHHHHH-HHHHHHHHhCCCCcccccccccccc
Confidence 344678889999999999999875 333 12 469999999643 355555 888886544321
Q ss_pred ------hH------HHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH-------HHHHHHHHhcCCChHHHHHH
Q psy18014 140 ------MI------QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR-------WVNEVQEALNSENVMVQYHA 200 (323)
Q Consensus 140 ------~~------~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~-------~~~~l~~~l~d~~~~V~~~a 200 (323)
+. +.-.+.+...|.+.+-|||-.|+-++--+....|+.+.+ -++.+.++|.|..-.+...|
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRnea 186 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHH
Confidence 11 223566788899999999999999999999888875543 46678999999888888889
Q ss_pred HHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCC--ChhHHH
Q psy18014 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHK--SETVVY 278 (323)
Q Consensus 201 l~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~aV~~ 278 (323)
+.++.++.++++. +.|++.-= +-| -.++.++..-..-+-.. ...+-+.++..+|+.+ |-..+.
T Consensus 187 llLL~~Lt~~n~~-iQklVAFE------naF--e~Lf~Ii~~Eg~~~Ggi------vv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 187 VLLLQALTRSNGA-IQKIVAFE------NAF--ERLLDIITEEGNSDGGI------VVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHT------THH--HHHHHHHHHHTGGGSHH------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHH-HHHHHHHh------ccH--HHHHHHHHhcCCCccch------hHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999987643 33444311 111 13334432110000000 1456667777778765 456666
Q ss_pred H--HHHHHHcccCCC-------HHhH---hhHHHHHHHHhcCCC
Q psy18014 279 E--AAHAIVNLRRTS-------AREL---APAVSVLQLFCSSPK 310 (323)
Q Consensus 279 e--a~k~i~~l~~~~-------~~~~---~~~~~~l~~~L~s~~ 310 (323)
| +++.+..+-... .+-. ..+...++.|++.+.
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6 444444332111 1111 235566666776543
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.77 E-value=6 Score=39.43 Aligned_cols=294 Identities=12% Similarity=0.078 Sum_probs=160.8
Q ss_pred CCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchh--hhhhHHHHHHhhcCCCchhHHHHHHHHH
Q psy18014 20 GNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQE--ATDAFFAMTKLFQSKDVILRRMVYLGIK 97 (323)
Q Consensus 20 ~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e--~s~lf~~vvkl~~s~d~~lKkl~Ylyl~ 97 (323)
..+|...+ +..+-.+..++...-+. .+. ..|..+..|.+-.... -....+.+|+++.+.+..++.-.--++.
T Consensus 42 ~~~~~~~~----i~~LV~~L~s~~~~~q~-~Aa-~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~ 115 (584)
T 3l6x_A 42 PPNWRQPE----LPEVIAMLGFRLDAVKS-NAA-AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115 (584)
T ss_dssp CCCCCCCC----HHHHHHHTTCSCHHHHH-HHH-HHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCccccc----HHHHHHHHCCCCHHHHH-HHH-HHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44455444 33332333444333333 555 4566666554311111 1234567899999999999999999999
Q ss_pred Hhccc-Ccc---hHh---hhhhhhhhcCC-CChHHHhH---HHHHhhCCCc--hhhHHHHHHHHHHhc------------
Q psy18014 98 ELSNI-AED---VII---VTSSLTKDMTG-KEDLYRAA---AIRALCSITD--TTMIQAIERYMKQAI------------ 152 (323)
Q Consensus 98 ~~~~~-~~~---~lL---~iNsl~kDl~~-~N~~ir~l---ALr~L~~i~~--~~~~~~l~~~v~~~L------------ 152 (323)
+++.. .++ ++. ++..|.+=|.+ +++.++-. ||..|+.-.. ..+++.-.+++.+.+
T Consensus 116 nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 116 NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----
T ss_pred HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccc
Confidence 99763 222 232 35556666654 45666665 5566655221 124444455566554
Q ss_pred ------cCCChHHHHHHHHHHHhhhccChh----------HHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhcC---
Q psy18014 153 ------VDRNSAVSSAAVVSIFHMTKHSPD----------LVKRWVNEVQEALN--SENVMVQYHALGLLYHIRKSD--- 211 (323)
Q Consensus 153 ------~d~~~yVRk~A~~~~~kl~~~~p~----------~v~~~~~~l~~~l~--d~~~~V~~~al~ll~~l~~~d--- 211 (323)
...++.|+..|+-|+..|-..+++ +++.++..++..+. +.+...+-+|+..|.-+....
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 123589999999999988766544 12233344444332 234466777777765554220
Q ss_pred -------------------------------hhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhh-hcccCCC--CCC
Q psy18014 212 -------------------------------QLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQ-NAASGDT--NWS 257 (323)
Q Consensus 212 -------------------------------~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~-~~~~~~~--~~~ 257 (323)
+..+..++..|... .++..+..-...+..+...+ +... .. .-.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~-~~~~~v~ 352 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGR-YIRSALR 352 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHH-HHHHHHT
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccH-HHHHHHH
Confidence 00112222222211 23434333333332221100 0000 00 001
Q ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHcccCCC--HH-hHhhHHHHHHHHhcCC--------ChhhHHHHHhhhc
Q psy18014 258 NSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTS--AR-ELAPAVSVLQLFCSSP--------KPVLRFAAVRTLN 322 (323)
Q Consensus 258 ~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~--~~-~~~~~~~~l~~~L~s~--------~~niry~aL~~l~ 322 (323)
.+.-+..|..+|++.+..|+-.|+.++-++...+ .. +-..++..|-.+|.++ ..++...|+++|+
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 2345778888899999999999999998886422 22 3367788888888876 3467888888764
No 82
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.71 E-value=3.4 Score=36.78 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=65.6
Q ss_pred HHhHHHHHhhC---CCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHH
Q psy18014 124 YRAAAIRALCS---ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200 (323)
Q Consensus 124 ir~lALr~L~~---i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~a 200 (323)
.+-..|+.+-. -.+|++.+.+.+.+.+...|++..|||-.+-=+...+...++++.+.++.+..++.|.|+.|+=.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55555554433 346889999999999999999999999977777788999999999999999999999999887766
Q ss_pred HH
Q psy18014 201 LG 202 (323)
Q Consensus 201 l~ 202 (323)
+.
T Consensus 111 I~ 112 (257)
T 3gs3_A 111 IQ 112 (257)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.10 E-value=8.3 Score=40.90 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHhhhcc-ChhHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhcChhhH----H
Q psy18014 143 AIERYMKQAIVDRNSAVSSAAVVSIFHMTKH-SPDLVKRWVNEVQEALNSEN-VMVQYHALGLLYHIRKSDQLAV----T 216 (323)
Q Consensus 143 ~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~-~p~~v~~~~~~l~~~l~d~~-~~V~~~al~ll~~l~~~d~~~~----~ 216 (323)
.+.+.+..++.|+.+-||++|-.++--++.. +|+.++.+++.+.+.+.+.. =..-..|+.++..+....+..+ .
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 3568899999999999999999888888754 47788888998888886554 4667778888888876554333 5
Q ss_pred HHHHHHhhccCCC-hHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHhcCCChhHHHHHHHHHHcccCC---CH
Q psy18014 217 KLVAKLTKFTMKS-PYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRT---SA 292 (323)
Q Consensus 217 ~lv~~L~~~~~~~-~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~---~~ 292 (323)
.+++.+...-|.. |-..-.-.+.+.++...- .+++.+.+++.|..++.+.+. +=||++.+..-+-+ ..
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~------~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~ 246 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETV------DNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTP 246 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC------CCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcC------CCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecc
Confidence 6666665332211 212212222222110000 134689999999999987754 88999987766532 23
Q ss_pred HhHhhHHHHHHHHhcCCChhhH
Q psy18014 293 RELAPAVSVLQLFCSSPKPVLR 314 (323)
Q Consensus 293 ~~~~~~~~~l~~~L~s~~~nir 314 (323)
.-++..+..|.+=|..++..++
T Consensus 247 ~~l~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 247 ATLSIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHH
T ss_pred hhHHHHHHHHHhhhccCcchhh
Confidence 4466677777777776665554
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.88 E-value=0.96 Score=39.74 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=76.5
Q ss_pred HhhhhhhhhhcCCCCh--HHHhHHHHHhhCCC--chh----hHH-HHHHHHHHhccCCChHHHHHHHHHHHhhhccChh-
Q psy18014 107 IIVTSSLTKDMTGKED--LYRAAAIRALCSIT--DTT----MIQ-AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPD- 176 (323)
Q Consensus 107 lL~iNsl~kDl~~~N~--~ir~lALr~L~~i~--~~~----~~~-~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~- 176 (323)
-+.+-.+.+-++++++ .++..|..++.++. .++ +++ -..+++.+.|.+.++.|+..|+-++..|-..+++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4555667777888877 77666666665543 222 221 2468899999999999999999999998876554
Q ss_pred --HHH--HHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCh
Q psy18014 177 --LVK--RWVNEVQEALN-SENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 177 --~v~--~~~~~l~~~l~-d~~~~V~~~al~ll~~l~~~d~ 212 (323)
.+. ..++.+-++|. ..++.+..+|.++|+.+...+.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~ 127 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh
Confidence 232 26778888887 4688999999999998876543
No 85
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.76 E-value=0.95 Score=39.98 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=78.0
Q ss_pred HHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhh-hhhhcCCCCh---HHHhHHHHHhhC-CCchhhHHHHHHHHHHhc
Q psy18014 78 TKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSS-LTKDMTGKED---LYRAAAIRALCS-ITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 78 vkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNs-l~kDl~~~N~---~ir~lALr~L~~-i~~~~~~~~l~~~v~~~L 152 (323)
..+.+++-.++|=+.-..+... ...++++-.+-. +. +|+|= ..-+.|++-+|. ..+.. +.+.+.+-.
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~~~~L~~ir~~va---~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~ 148 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKDKEILIFMRDEVS---KDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWL 148 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTSHHHHHHHHHTGG---GCSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCcHHHHHHHHHHhC---CCCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHh
Confidence 3445666565554433333333 222223322322 32 34553 333667777775 43433 334566777
Q ss_pred cCCChHHHHHHHHHHHh---h--hccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy18014 153 VDRNSAVSSAAVVSIFH---M--TKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKL 222 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~k---l--~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L 222 (323)
.|.++.||+.|+.+... . ++.+|+. .++-+..+..|.+.-|.-+--..|.++.+.+|.....++..-
T Consensus 149 ~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~---ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~w 220 (240)
T 3l9t_A 149 KSSNLHTRRAATEGLRIWTNRPYFKENPNE---AIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKNW 220 (240)
T ss_dssp HCSSHHHHHHHHHHTCSGGGSTTTTTCHHH---HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHhhHHHhccchhhcCHHH---HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh
Confidence 78889999988887521 1 2334443 455666666788877777766778888888888887777753
No 86
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.52 E-value=4.7 Score=41.57 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=95.8
Q ss_pred hHHHhHHHHHhhCCCc-----hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccC--hhHHH---HHHHHHHHHhcC
Q psy18014 122 DLYRAAAIRALCSITD-----TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHS--PDLVK---RWVNEVQEALNS 191 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~-----~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~--p~~v~---~~~~~l~~~l~d 191 (323)
+.+|.+|+-.||++.. ..=+..+.+.+++.|.+.+...|+.|+-++..+-... .+.+. .++..+-+++.+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~ 387 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS 387 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC
Confidence 4666666666666552 1223446666666666655445666666666554321 12111 255566666653
Q ss_pred -CChHHHHHHHHHHHHHHhcChh------hHHHHHHHHh-----hccCCChH-HHHHHHHHHHHHhhhhhcccCCCCCCc
Q psy18014 192 -ENVMVQYHALGLLYHIRKSDQL------AVTKLVAKLT-----KFTMKSPY-ATCMLIRIVCKLIEDQNAASGDTNWSN 258 (323)
Q Consensus 192 -~~~~V~~~al~ll~~l~~~d~~------~~~~lv~~L~-----~~~~~~~~-~~~~llr~~~~~~~~~~~~~~~~~~~~ 258 (323)
.+..+.|.++.++.-+....+. ...+|-..-. ...-.+++ ..-.+..+-++.+ ..
T Consensus 388 ~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l------------~e 455 (778)
T 3opb_A 388 QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI------------LR 455 (778)
T ss_dssp TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT------------TT
T ss_pred CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH------------HH
Confidence 4556666666666555442211 1111110000 00000000 0001111000000 11
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHcccCCCH---HhH-hhHHHHHHHHhcCCChh---hHHHHHhhhc
Q psy18014 259 SPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSA---REL-APAVSVLQLFCSSPKPV---LRFAAVRTLN 322 (323)
Q Consensus 259 ~~~~~~l~~~L~~~~~aV~~ea~k~i~~l~~~~~---~~~-~~~~~~l~~~L~s~~~n---iry~aL~~l~ 322 (323)
...+..|..++++.++.+.-.|++++..++.... .+. ..+..+|..+|.++..+ .|-.|.+.|.
T Consensus 456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA 526 (778)
T 3opb_A 456 TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526 (778)
T ss_dssp TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 2345666677888999999999999999975321 122 46678888888877544 7888877764
No 87
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.34 E-value=1.8 Score=40.93 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=74.0
Q ss_pred cchHhhhhhhhhhcCCCChHHHhHHHHHhhCC---CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHH
Q psy18014 104 EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI---TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR 180 (323)
Q Consensus 104 ~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i---~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~ 180 (323)
+.++=.+|.-.. ++++ .+-..|+.+-.+ .+|++.+.+.+.|.+.-.|++..|||-.+-=+...+..++|++.+
T Consensus 25 ~~v~~lln~A~~---~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~ 100 (386)
T 3o2t_A 25 ERVVDLLNQAAL---ITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK 100 (386)
T ss_dssp HHHHHHHHHHHH---CCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHhhhc---cChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445565554 2233 566667666654 678899999999999999999999999888888888899999999
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q psy18014 181 WVNEVQEALNSENVMVQYHAL 201 (323)
Q Consensus 181 ~~~~l~~~l~d~~~~V~~~al 201 (323)
.++.+..++.|.|+.|+=.++
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I 121 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAI 121 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998876664
No 88
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=91.99 E-value=11 Score=37.90 Aligned_cols=308 Identities=12% Similarity=0.127 Sum_probs=165.0
Q ss_pred cccccchHHHHhhhhcCCCCCchhhHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHH-Hhh
Q psy18014 3 KLKAKAPIQQLLRYKRTGNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMT-KLF 81 (323)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ek~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vv-kl~ 81 (323)
+-+|.+.+..+..+-.++. ...|+++-+.++|.|.......-- -.+|.-+|..+.... .+.|+...--..+ .++
T Consensus 16 ~qs~~etI~~L~~Rl~~~t--l~eDRR~Av~~Lk~~sk~y~~~Vg-~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~ 90 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASST--LLDDRRNAVRALKSLSKKYRLEVG-IQAMEHLIHVLQTDR--SDSEIIGYALDTLYNII 90 (651)
T ss_dssp --CHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTTTTTTHHH-HHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHhHHHhh-hhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHh
Confidence 3456666777764443331 347788888888888754322211 145666776665542 1233332222222 233
Q ss_pred cCCCch---------hHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC---chhhHHHH-----
Q psy18014 82 QSKDVI---------LRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT---DTTMIQAI----- 144 (323)
Q Consensus 82 ~s~d~~---------lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~---~~~~~~~l----- 144 (323)
..++.. ..-++--+...|....+.+-+.++. +++.+.++|-.|++.|..+. +...-+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l----L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~ 166 (651)
T 3grl_A 91 SNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL----LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM 166 (651)
T ss_dssp CCC--------------CHHHHHHHHHHHSTHHHHHHHHH----TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTT
T ss_pred CCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHH----hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcc
Confidence 322211 1122333333333333333344443 46789999999987776654 33344433
Q ss_pred -HHHHHHhccCCChHHHHHHHHHHHhhhccChhHHH-----HHHHHHHHHhcCCCh----HHHHHHHHHHHHHHhcChhh
Q psy18014 145 -ERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK-----RWVNEVQEALNSENV----MVQYHALGLLYHIRKSDQLA 214 (323)
Q Consensus 145 -~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~-----~~~~~l~~~l~d~~~----~V~~~al~ll~~l~~~d~~~ 214 (323)
.+.+...|.|++..+|-.|+..+..+.+.++++=+ ..++.+-+.+..+.+ .|+..++.+++.+-+.++.+
T Consensus 167 gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN 246 (651)
T 3grl_A 167 GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN 246 (651)
T ss_dssp HHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH
Confidence 45688899999999999999999999999998644 346666666665443 77788888888887776544
Q ss_pred H---------HHHHHHHh----hccCCC-----hHHHHHHHHHHHHHhhhhhcccC-CCCC--CchhHHHHHHHHhcCC-
Q psy18014 215 V---------TKLVAKLT----KFTMKS-----PYATCMLIRIVCKLIEDQNAASG-DTNW--SNSPLFDYLETCLRHK- 272 (323)
Q Consensus 215 ~---------~~lv~~L~----~~~~~~-----~~~~~~llr~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~L~~~- 272 (323)
. .+|++-|. ...|.. -|+...++|.+. .+..+..+. ..++ ....++..+-.++.+.
T Consensus 247 Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv--~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~ 324 (651)
T 3grl_A 247 QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV--SPNNPPGATSSCQKAMFQCGLLQQLCTILMATG 324 (651)
T ss_dssp HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT--CTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 3 12222221 113332 244555555543 111100000 0000 0122344555555544
Q ss_pred -ChhHHHHHHHHHHcccCCCH---HhH-----------hhHHHHHHHHhcC-CChhhHHHHHhhh
Q psy18014 273 -SETVVYEAAHAIVNLRRTSA---REL-----------APAVSVLQLFCSS-PKPVLRFAAVRTL 321 (323)
Q Consensus 273 -~~aV~~ea~k~i~~l~~~~~---~~~-----------~~~~~~l~~~L~s-~~~niry~aL~~l 321 (323)
...|.-+|++++-.+-..++ +.+ ...+..+..++.+ ....+|++|+..+
T Consensus 325 ~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 325 VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 56778888888766532221 111 2233334555543 5578899998765
No 89
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.72 E-value=4.9 Score=37.95 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=95.0
Q ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHh
Q psy18014 29 TAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVII 108 (323)
Q Consensus 29 ~~i~qe~~~f~~~~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL 108 (323)
..++.-++...... +..|+ +.|+++=-+....+. ....++|..++.+-..++.++||.+=-|+.... .
T Consensus 25 ~~v~~lln~A~~~~-~~~Kl-~~L~q~~EL~l~~dp---sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~-------~ 92 (386)
T 3o2t_A 25 ERVVDLLNQAALIT-NDSKI-TVLKQVQELIINKDP---TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEAC-------K 92 (386)
T ss_dssp HHHHHHHHHHHHCC-STHHH-HHHHHHHHHHHTTCG---GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHhhhccC-hHHHH-HHHHHHHHHHhccCH---HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-------H
Confidence 34444454443333 34666 888887766554433 234678888999888899999999988886332 1
Q ss_pred hhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhcc-------Ch---hHH
Q psy18014 109 VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH-------SP---DLV 178 (323)
Q Consensus 109 ~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~-------~p---~~v 178 (323)
...+++..+...+...+.|.++.|-|.|+.|+..+|+. +| +..
T Consensus 93 ---------------------------~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~ 145 (386)
T 3o2t_A 93 ---------------------------RDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQ 145 (386)
T ss_dssp ---------------------------HCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhH
Confidence 25778888888899999999999999999998888742 22 222
Q ss_pred H-------HHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 179 K-------RWVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 179 ~-------~~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
+ .+.+.+-.+....|.+|-.+++-++..
T Consensus 146 e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 146 EACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 2 234455556667788888888755444
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.67 E-value=5.3 Score=39.99 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=100.1
Q ss_pred HhhhhhhhhhcCCCChHHHh---HHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHH
Q psy18014 107 IIVTSSLTKDMTGKEDLYRA---AAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVN 183 (323)
Q Consensus 107 lL~iNsl~kDl~~~N~~ir~---lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~ 183 (323)
+-+...+.+++.++.=.+|- ++||-+..+... .+.+.+.+..+|.|.+..||-.|+.++.-+. .|+.+..++.
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~ 337 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLE 337 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHH
Confidence 33445555677777777776 566666443332 6888999999999999999999999988887 5666666666
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHH
Q psy18014 184 EVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFD 263 (323)
Q Consensus 184 ~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+-++|.+.|. .+ .+.-....||-.++.+ ++.. ...+.++.
T Consensus 338 iLWd~L~~LDD------------------LS-------------ASTgSVMdLLAkL~s~---p~~a-----~~dp~LVP 378 (800)
T 3oc3_A 338 KCWKNIESEEL------------------IS-------------VSKTSNLSLLTKIYRE---NPEL-----SIPPERLK 378 (800)
T ss_dssp HHHHHHHTCCS------------------CC-------------TTHHHHHHHHHHHHHH---CTTC-----CCCSGGGG
T ss_pred HHHHHhhhhcc------------------cc-------------hhhHHHHHHHHHHHcC---Cccc-----ccChHHHH
Confidence 65555554331 00 0001111122222222 1111 01246777
Q ss_pred HHHHHhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhh
Q psy18014 264 YLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320 (323)
Q Consensus 264 ~l~~~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~ 320 (323)
.|-|+++|+-++|...+.+++..+.. ...+. -..|..|-..+.+++=.+++.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL~--~~~LR---LIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLSE--ESIDF---LVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCCC--HHHHH---HHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHh--hhHHH---HHHHHHHhCCcHHHHHHHHHH
Confidence 88889999999999999999988862 22222 233444445556665555543
No 91
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.62 E-value=1.2 Score=47.55 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=79.2
Q ss_pred CCchhHHHHHHHHHHhcc--------cCcch-HhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHh---
Q psy18014 84 KDVILRRMVYLGIKELSN--------IAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQA--- 151 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~--------~~~~~-lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~--- 151 (323)
++..+++.++|.+..+.. .+++. --+.+.+.+-+...++.-+-++||+|++++.|+.++.+.+++...
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~ 486 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKS 486 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSC
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccc
Confidence 355677778887766621 12332 235666666666778888999999999999999888777765321
Q ss_pred ccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy18014 152 IVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLL 204 (323)
Q Consensus 152 L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll 204 (323)
-.+...-||..|+.|+-++-..+|+.+++.+-.+..= ...++-|-..|..++
T Consensus 487 ~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n-~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 487 LDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLN-VAIKSELRIRSCIVF 538 (1056)
T ss_dssp CCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHC-TTSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC-CCCChHHHHHHHHHH
Confidence 1223457999999998888888888877643333210 234556666665444
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.58 E-value=12 Score=32.85 Aligned_cols=135 Identities=14% Similarity=0.075 Sum_probs=79.4
Q ss_pred HHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccC-cchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC
Q psy18014 58 LINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA-EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT 136 (323)
Q Consensus 58 ~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~-~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~ 136 (323)
-|+-|..+|.--|-+....+.+-+..-....|-+-=.+...+.... ++.+=+...| .+|+...+|+.|.-.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~~la~~L---~~~~~deVR~~Av~lLg~~- 98 (240)
T 3l9t_A 23 SMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKKLAFLA---YQSDVYQVRMYAVFLFGYL- 98 (240)
T ss_dssp -----------CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHHHHHHHH---HTCSSHHHHHHHHHHHHHT-
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHHHHHHHH---HhCcchHHHHHHHHHHHhc-
Confidence 3444444444344444334444444444455555555555554433 2333222222 2566779999999999988
Q ss_pred chhhHHHHHHHHHH-hccCCChHHHHHHHHHHHhhhc-cChhHHHHHHHHHHHHhcCCChHHHHHHH
Q psy18014 137 DTTMIQAIERYMKQ-AIVDRNSAVSSAAVVSIFHMTK-HSPDLVKRWVNEVQEALNSENVMVQYHAL 201 (323)
Q Consensus 137 ~~~~~~~l~~~v~~-~L~d~~~yVRk~A~~~~~kl~~-~~p~~v~~~~~~l~~~l~d~~~~V~~~al 201 (323)
. .. +.+.+.+++ .-.|.+=-||-.++.++..++. .+||. .++.+.+-+.|.|+-|--.|.
T Consensus 99 ~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~As 160 (240)
T 3l9t_A 99 S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAAT 160 (240)
T ss_dssp T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHH
T ss_pred c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHH
Confidence 3 33 778888887 7788999999999999999886 78874 344566777899987776664
No 93
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=88.55 E-value=1.2 Score=38.66 Aligned_cols=143 Identities=13% Similarity=0.021 Sum_probs=85.3
Q ss_pred HHhhcCCCchhHHHHHHHHHHhccc-CcchHhhhhhhhhhcCCCC-hHHHhHHHHHhhCCC--chhhHHHHHHHHHHhcc
Q psy18014 78 TKLFQSKDVILRRMVYLGIKELSNI-AEDVIIVTSSLTKDMTGKE-DLYRAAAIRALCSIT--DTTMIQAIERYMKQAIV 153 (323)
Q Consensus 78 vkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL~iNsl~kDl~~~N-~~ir~lALr~L~~i~--~~~~~~~l~~~v~~~L~ 153 (323)
..|.+++-++.+-+.-+++....+. .++.+-.+..+..+ -+| +.+=++| ++++.+. .++ .+.+.+.+-..
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~ 134 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYG 134 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHc
Confidence 4567877788877777777765433 44444334444433 223 3444444 4333331 222 13345777888
Q ss_pred CCChHHHHHHHHHHHhhh-ccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHH
Q psy18014 154 DRNSAVSSAAVVSIFHMT-KHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYA 232 (323)
Q Consensus 154 d~~~yVRk~A~~~~~kl~-~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~ 232 (323)
|.+.++|+.|+.+.+.-. ..+++ ..+.-+...+.|.+-.|.-+.--.|.++.+.++......+ +-. -.++|+
T Consensus 135 s~~~w~rR~ai~~~l~~~~~~~~~---~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl-~~~---~l~~~~ 207 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKEKTNQD---LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM-KEL---VLSPLA 207 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGGGCCHH---HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH-HHS---CCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH-hhc---cCCHHH
Confidence 999999999999775332 22343 3344455577788777776666678888888888887777 321 235566
Q ss_pred H
Q psy18014 233 T 233 (323)
Q Consensus 233 ~ 233 (323)
.
T Consensus 208 ~ 208 (220)
T 2b6c_A 208 Q 208 (220)
T ss_dssp H
T ss_pred H
Confidence 5
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.10 E-value=24 Score=36.51 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=72.7
Q ss_pred hcCCCchhHHHHHHHHHHhcccCcchH-hhhhhhhhhcCCCChHHHhHHHHHhhCCC-------chhhHHHHHHHHHHhc
Q psy18014 81 FQSKDVILRRMVYLGIKELSNIAEDVI-IVTSSLTKDMTGKEDLYRAAAIRALCSIT-------DTTMIQAIERYMKQAI 152 (323)
Q Consensus 81 ~~s~d~~lKkl~Ylyl~~~~~~~~~~l-L~iNsl~kDl~~~N~~ir~lALr~L~~i~-------~~~~~~~l~~~v~~~L 152 (323)
+.+.|...|+-..-++..+.+.+ ++. .+..-+. ++.++.+|-.|..+|-+.. +++-.+.+-..+.+.+
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~p-~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 109 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVSP-QAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQI 109 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHST-THHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcCH-HHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHH
Confidence 56678899999999998886644 433 3333333 3678899988888776532 3333444444444444
Q ss_pred cC---CChHHHHHHHHHHHhhhcc-----ChhHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHH
Q psy18014 153 VD---RNSAVSSAAVVSIFHMTKH-----SPDLVKRWVNEVQEALNS-----ENVMVQYHALGLLYHI 207 (323)
Q Consensus 153 ~d---~~~yVRk~A~~~~~kl~~~-----~p~~v~~~~~~l~~~l~d-----~~~~V~~~al~ll~~l 207 (323)
.+ ..++||.+.+.++..+.+. .|+.+ +.+..++.. .++..+..++.++..+
T Consensus 110 ~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l----~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 110 TRFASGSKIVLTRLCVALASLALSMMPDAWPCAV----ADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHH----HHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhCccccchHH----HHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 43 4699999999998877643 45544 444444443 2444555555554444
No 95
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=87.00 E-value=2.3 Score=37.20 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=49.7
Q ss_pred hcCCCChHHHhHHHH----HhhCCC----chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q psy18014 116 DMTGKEDLYRAAAIR----ALCSIT----DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 116 Dl~~~N~~ir~lALr----~L~~i~----~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~ 187 (323)
=+.|+|+..|-.|+- .++... ...-.+.+...+...+.|.+.||+|+..-++..+...+|+.+++++..-..
T Consensus 116 W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~ 195 (235)
T 1t06_A 116 WIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKE 195 (235)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 345677777777777 555444 335566677777777788888888887777777777778777776654443
Q ss_pred H
Q psy18014 188 A 188 (323)
Q Consensus 188 ~ 188 (323)
+
T Consensus 196 l 196 (235)
T 1t06_A 196 V 196 (235)
T ss_dssp H
T ss_pred h
Confidence 3
No 96
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=86.92 E-value=1.8 Score=37.82 Aligned_cols=181 Identities=14% Similarity=0.107 Sum_probs=102.2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCCCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcc-cCcchHhhhhhhhhhcCCC
Q psy18014 42 PVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSN-IAEDVIIVTSSLTKDMTGK 120 (323)
Q Consensus 42 ~~~~~k~~~~l~kli~~~~~G~~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~-~~~~~lL~iNsl~kDl~~~ 120 (323)
++..-..|..-+++....... + .....--+-.+.++...+.+=++..++..+.+ ..++.+-.+..+... .+
T Consensus 37 GVr~P~lR~laK~~~k~~~~~-~-----~~~~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~--~~ 108 (232)
T 3jxy_A 37 GIQTPERRQLLKDIIQIHTLP-D-----QKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIVT--KS 108 (232)
T ss_dssp CCCHHHHHHHHHHHHHHHCCC-C-----GGGHHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHTS--SC
T ss_pred ccChHHHHHHHHHHHHhcccc-c-----hhhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc--CC
Confidence 345555556666665543221 1 01111123467788888877777777765533 233332222333332 23
Q ss_pred C-hHHHhHHHHHhhCCC--chhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc-cChhHHHHHHHHHHHHhcCCChHH
Q psy18014 121 E-DLYRAAAIRALCSIT--DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK-HSPDLVKRWVNEVQEALNSENVMV 196 (323)
Q Consensus 121 N-~~ir~lALr~L~~i~--~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~-~~p~~v~~~~~~l~~~l~d~~~~V 196 (323)
| +.+-++|-+.++.+. .|+ .+.+.+.+-..|.++++|+.|+.+...-+. .+++ .+...+...+.|.+.-|
T Consensus 109 nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~---~~~~~i~~~~~d~~~yV 182 (232)
T 3jxy_A 109 WWDSVDSIVPTFLGDIFLKHPE---LISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEE---LLFWIIGQLHSSKEFFI 182 (232)
T ss_dssp CHHHHHHHTTTHHHHHHHHCGG---GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH---HHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHhhHHHHHHHHHHCHH---HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH---HHHHHHHHhcCCHHHHH
Confidence 4 233344333322221 222 122456677788999999999988654432 3344 34445566778888788
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHhhccCCChHHHHHHHHHH
Q psy18014 197 QYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIV 240 (323)
Q Consensus 197 ~~~al~ll~~l~~~d~~~~~~lv~~L~~~~~~~~~~~~~llr~~ 240 (323)
.-+.--.|.++.+.++......+..- -.++|+.-.-++.+
T Consensus 183 ~kAvgW~Lr~~~k~~p~~v~~fl~~~----~l~~~~~r~A~k~l 222 (232)
T 3jxy_A 183 QKAIGWVLREYAKTNPDVVWEYVQNN----ELAPLSKREAIKHI 222 (232)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHS----CCCHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHC----CCCHHHHHHHHHhc
Confidence 77766678888888888887777753 24677774444443
No 97
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.63 E-value=11 Score=36.62 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=87.1
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhccc-CcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhc
Q psy18014 74 FFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAI 152 (323)
Q Consensus 74 f~~vvkl~~s~d~~lKkl~Ylyl~~~~~~-~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L 152 (323)
|-.++.... .+...|||.=-++-.|.+. ++..--++|++..=|.|.++.||--|+|.|..+...+.+.-+..-+.|.|
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 444444444 4689999999999999776 45577899999998999999999999999999998899999999999999
Q ss_pred cCCChHHHHHHHHHHHhhhccChhH-HHHHHHHHHH
Q psy18014 153 VDRNSAVSSAAVVSIFHMTKHSPDL-VKRWVNEVQE 187 (323)
Q Consensus 153 ~d~~~yVRk~A~~~~~kl~~~~p~~-v~~~~~~l~~ 187 (323)
..-++--+...=-++..+++.+|.. +..++..+..
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~ 145 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ 145 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc
Confidence 9888666655555566666668754 3445555554
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.78 E-value=5.9 Score=40.03 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcc--hHh---hhhh-hhhhcCCCChHHHhHHHHHhhCC---CchhhHHH----
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAED--VII---VTSS-LTKDMTGKEDLYRAAAIRALCSI---TDTTMIQA---- 143 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~--~lL---~iNs-l~kDl~~~N~~ir~lALr~L~~i---~~~~~~~~---- 143 (323)
+++.++|.|...|.....++.++...++. .++ ++-. +.+=+.|+|+.||-.|.-+|.++ ..++.+.+
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 45667888888888888888888664322 222 1223 33346777887777766555544 45566665
Q ss_pred -HHHHHHHhc
Q psy18014 144 -IERYMKQAI 152 (323)
Q Consensus 144 -l~~~v~~~L 152 (323)
+.+++..++
T Consensus 119 ~il~~L~~~l 128 (684)
T 4gmo_A 119 DVLTAIEHAA 128 (684)
T ss_dssp THHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 344454444
No 99
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.75 E-value=44 Score=34.62 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=72.5
Q ss_pred CChHHHhHHHHHhhCCCch------hhHHHHHHHHHHhcc--CCChHHHHHHHHHHHhhh---ccChhHHHHHHHHHHHH
Q psy18014 120 KEDLYRAAAIRALCSITDT------TMIQAIERYMKQAIV--DRNSAVSSAAVVSIFHMT---KHSPDLVKRWVNEVQEA 188 (323)
Q Consensus 120 ~N~~ir~lALr~L~~i~~~------~~~~~l~~~v~~~L~--d~~~yVRk~A~~~~~kl~---~~~p~~v~~~~~~l~~~ 188 (323)
++...|=.||.+++.|... +.++.+.+.+ ..+. |.+|.||..|+.++++.. ..+|+.....++.+-..
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5667888888888888642 3445555533 3344 579999999999998755 34566677777777776
Q ss_pred hcCCChHHHHHHHHHHHHHHhcChhhHH----HHHHHHh---hccCCChHHHHHHHHHHHHHh
Q psy18014 189 LNSENVMVQYHALGLLYHIRKSDQLAVT----KLVAKLT---KFTMKSPYATCMLIRIVCKLI 244 (323)
Q Consensus 189 l~d~~~~V~~~al~ll~~l~~~d~~~~~----~lv~~L~---~~~~~~~~~~~~llr~~~~~~ 244 (323)
+ + +.|..+|..++..+.+.-+..+. .++..+. ..+-.+.-.+..+++.+....
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7 3 77777777777666655443332 2222221 111123456666666665543
No 100
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.31 E-value=34 Score=36.63 Aligned_cols=106 Identities=7% Similarity=0.057 Sum_probs=64.4
Q ss_pred CCCchhhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCCc------
Q psy18014 64 QLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD------ 137 (323)
Q Consensus 64 ~~~~~e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~------ 137 (323)
||++---...+-.++..+-+++...|+-..-++..+.+. +++...+-.+.. ++.|+.+|-.|+.+|-+...
T Consensus 20 d~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-p~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L 96 (1073)
T 3gjx_A 20 DFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-PDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKIL 96 (1073)
T ss_dssp SSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGS
T ss_pred CcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-chHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhC
Confidence 455422234555566777777888999999999888664 455444333432 25689999999888766433
Q ss_pred -hhhH----HHHHHHHHHhccC-----CChHHHHHHHHHHHhhhc
Q psy18014 138 -TTMI----QAIERYMKQAIVD-----RNSAVSSAAVVSIFHMTK 172 (323)
Q Consensus 138 -~~~~----~~l~~~v~~~L~d-----~~~yVRk~A~~~~~kl~~ 172 (323)
++-. +.+...+.+.-.+ .++.++.+.+.++..+.+
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k 141 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILK 141 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHH
Confidence 2222 3444444443222 357777777777777663
No 101
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=82.27 E-value=18 Score=37.47 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=75.5
Q ss_pred cCCCchhHHHHHHHHHHhcccC--c--ch-HhhhhhhhhhcCCCChHHHhHHHHHhhCCCc-----hhhHHHHHHHHHHh
Q psy18014 82 QSKDVILRRMVYLGIKELSNIA--E--DV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITD-----TTMIQAIERYMKQA 151 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~~~--~--~~-lL~iNsl~kDl~~~N~~ir~lALr~L~~i~~-----~~~~~~l~~~v~~~ 151 (323)
.+.+...+--.+.++..+++.- + .. --+++.+ -++.+++|.+|..|+.+++.+.. ++..+.+.+.+.++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5667778888888888886531 1 11 1233322 35666799999999999998754 46778888888889
Q ss_pred ccCCChHHHHHHHHHHHhhhccChhH----HHHHHHHHHHHhcC
Q psy18014 152 IVDRNSAVSSAAVVSIFHMTKHSPDL----VKRWVNEVQEALNS 191 (323)
Q Consensus 152 L~d~~~yVRk~A~~~~~kl~~~~p~~----v~~~~~~l~~~l~d 191 (323)
+.+ |-|+..|+.++.++.+..++. ++.+++.+.+++..
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 866 889999999999888654432 34566666666654
No 102
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.80 E-value=4.8 Score=42.63 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=63.7
Q ss_pred hHHHhHHHHHhhCCCch------------hhHHHHHHHHHHhcc-----CCChHHHHHHHHHHHhhh---ccChhHHHHH
Q psy18014 122 DLYRAAAIRALCSITDT------------TMIQAIERYMKQAIV-----DRNSAVSSAAVVSIFHMT---KHSPDLVKRW 181 (323)
Q Consensus 122 ~~ir~lALr~L~~i~~~------------~~~~~l~~~v~~~L~-----d~~~yVRk~A~~~~~kl~---~~~p~~v~~~ 181 (323)
-..+=.||.+|+.+... +..+.+.+.+.+.+. +.+|.||..++..+.+.. ..+|+.+...
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~ 536 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPAL 536 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 34555677775554332 122345555555544 899999999999999755 4578888888
Q ss_pred HHHHHH--HhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 182 VNEVQE--ALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 182 ~~~l~~--~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
++.+-+ .+.+.++.|..+|-.++..+.+.-+
T Consensus 537 L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 537 IEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 888887 7778888999998877777665543
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.79 E-value=20 Score=37.85 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred hhhhhhhcC--CCChHHHhHHHHHhhCCCc-------hhhHHHHHHHHHHhcc-----CCChHHHHHHHHHHHhh---hc
Q psy18014 110 TSSLTKDMT--GKEDLYRAAAIRALCSITD-------TTMIQAIERYMKQAIV-----DRNSAVSSAAVVSIFHM---TK 172 (323)
Q Consensus 110 iNsl~kDl~--~~N~~ir~lALr~L~~i~~-------~~~~~~l~~~v~~~L~-----d~~~yVRk~A~~~~~kl---~~ 172 (323)
.+.+.+-++ +.+...+-.|+.++++|.. ..+.+.+.+.+..... |++|-||.+++.++.+. +.
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3566788889999998854 1335566666655333 35677777777777753 34
Q ss_pred cChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q psy18014 173 HSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210 (323)
Q Consensus 173 ~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~ 210 (323)
.+|+.....++.+-+.+.+.++.|..+|-..+..+...
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 57888888888888889998999998887666655543
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=80.71 E-value=33 Score=36.42 Aligned_cols=119 Identities=9% Similarity=0.082 Sum_probs=65.9
Q ss_pred cCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC-------chhhH----HHHHHHHHH
Q psy18014 82 QSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT-------DTTMI----QAIERYMKQ 150 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~-------~~~~~----~~l~~~v~~ 150 (323)
.+++-..|+-..-++..+.+.+ ++...+-.+.. ++.++.+|-.|+-+|-+.. +++-. +.+...+.+
T Consensus 26 y~p~~~~r~~A~~~L~~~q~sp-~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~ 102 (1023)
T 4hat_C 26 YQGSGVQQKQAQEILTKFQDNP-DAWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIIS 102 (1023)
T ss_dssp HHCCHHHHHHHHHHHHHHHHCT-TGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHcCc-cHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3333458888899998886654 44333333332 2557899988887775432 22222 333444443
Q ss_pred hccCC-----ChHHHHHHHHHHHhhhccC-hhHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy18014 151 AIVDR-----NSAVSSAAVVSIFHMTKHS-PDLVKRWVNEVQEALNSENVMVQYHALGLL 204 (323)
Q Consensus 151 ~L~d~-----~~yVRk~A~~~~~kl~~~~-p~~v~~~~~~l~~~l~d~~~~V~~~al~ll 204 (323)
.-.++ .++|+.+.+.++..++... |+-=.++++++-.++... +..+...+.++
T Consensus 103 ~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL 161 (1023)
T 4hat_C 103 MCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVL 161 (1023)
T ss_dssp HHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHH
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 32232 5899999888888776432 432223555565555443 33333334443
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=80.43 E-value=11 Score=37.91 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=34.7
Q ss_pred cCCCChHHHhHHHHHhhCCCchh-h-----HHHHHHH-HHHhccCCChHHHHHHHHHHHhhh
Q psy18014 117 MTGKEDLYRAAAIRALCSITDTT-M-----IQAIERY-MKQAIVDRNSAVSSAAVVSIFHMT 171 (323)
Q Consensus 117 l~~~N~~ir~lALr~L~~i~~~~-~-----~~~l~~~-v~~~L~d~~~yVRk~A~~~~~kl~ 171 (323)
|+|+++-.|..|+.+|++|.... + -+.++.. |.+.|.|+++-||..|+-++-.|.
T Consensus 43 L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56777777777777777776432 1 1223333 456677778888777776665554
No 106
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=80.40 E-value=11 Score=39.32 Aligned_cols=104 Identities=11% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCchhHHHHHHHHHHhcccC----cchH-hhhhhhhhhcC--CCChHHHhHHHHHhhCCCc-----hhhHHHHHHHHHHh
Q psy18014 84 KDVILRRMVYLGIKELSNIA----EDVI-IVTSSLTKDMT--GKEDLYRAAAIRALCSITD-----TTMIQAIERYMKQA 151 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~~~----~~~l-L~iNsl~kDl~--~~N~~ir~lALr~L~~i~~-----~~~~~~l~~~v~~~ 151 (323)
.+...+.-..+.+..+++.- ...+ -+++ +.-++. |++|.+|.-|+.+++.+.. ++..+.+.+.+.++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67777777777788886541 1111 1233 334444 5699999999999998643 56788888889999
Q ss_pred ccCCChHHHHHHHHHHHhhhccChhHHH----HHHHHHHHHhcC
Q psy18014 152 IVDRNSAVSSAAVVSIFHMTKHSPDLVK----RWVNEVQEALNS 191 (323)
Q Consensus 152 L~d~~~yVRk~A~~~~~kl~~~~p~~v~----~~~~~l~~~l~d 191 (323)
+ | |-|+..|+.++.++.+..++.+. .+++.+.+++..
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 8 4 78999999999999976655443 355555566665
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.80 E-value=25 Score=37.37 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=69.9
Q ss_pred hhhhhhhhhcCC--CChHHHhHHHHHhhCCC---c----hhhHHHHHHHHHHhcc-----CCChHHHHHHHHHHHhhh--
Q psy18014 108 IVTSSLTKDMTG--KEDLYRAAAIRALCSIT---D----TTMIQAIERYMKQAIV-----DRNSAVSSAAVVSIFHMT-- 171 (323)
Q Consensus 108 L~iNsl~kDl~~--~N~~ir~lALr~L~~i~---~----~~~~~~l~~~v~~~L~-----d~~~yVRk~A~~~~~kl~-- 171 (323)
...+.+.+-+.+ ++-..|=.|+=++++|. . ...+..+.+.+.+.+. |+.+-||.+++.++++..
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 345566665554 34455555555555543 2 2356677777777776 366788999988888644
Q ss_pred -ccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q psy18014 172 -KHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK 209 (323)
Q Consensus 172 -~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~ 209 (323)
..+|+..+..++.+-+.+.+.+|.|+.+|-..+..+..
T Consensus 531 l~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 531 LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 45788888888999888888999998888666655544
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=78.41 E-value=33 Score=29.74 Aligned_cols=67 Identities=21% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHhccCCCh--HHHHHHHHHHHhhhccChhH---HH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q psy18014 145 ERYMKQAIVDRNS--AVSSAAVVSIFHMTKHSPDL---VK--RWVNEVQEALNSENVMVQYHALGLLYHIRKSD 211 (323)
Q Consensus 145 ~~~v~~~L~d~~~--yVRk~A~~~~~kl~~~~p~~---v~--~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d 211 (323)
.+.+.+.|.+.++ -|+..|+-++..+...+++. +. ..++.+-++|...++.++.+|...|..+...+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 4567788898888 89999998888888666543 22 36888999999999999999999988887643
No 109
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=78.36 E-value=71 Score=33.62 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=62.1
Q ss_pred cCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC---chh--------hHHHHHHHHHH
Q psy18014 82 QSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT---DTT--------MIQAIERYMKQ 150 (323)
Q Consensus 82 ~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~---~~~--------~~~~l~~~v~~ 150 (323)
++.|...|+-.+-|+..+.+.+ ++.-.+-.+..+-...|+.+|--|+.+|-+.. +++ +-+.+...+.+
T Consensus 18 p~sd~~~r~~A~~~L~~~q~sp-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSSS-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHST-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCh-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 3458999999999999997654 55544444443322238888888877776321 222 23444444444
Q ss_pred hc-cCCChHHHHHHHHHHHhhhcc-----ChhHHHHHHHHH
Q psy18014 151 AI-VDRNSAVSSAAVVSIFHMTKH-----SPDLVKRWVNEV 185 (323)
Q Consensus 151 ~L-~d~~~yVRk~A~~~~~kl~~~-----~p~~v~~~~~~l 185 (323)
.- .+..++||.+.+.++..++.. .|+.+.+++..+
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~ 137 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVI 137 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHh
Confidence 11 034689999999998876632 355444444333
No 110
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=77.50 E-value=44 Score=30.79 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=45.4
Q ss_pred HhccCCChHHHHHHHHHHHhhhccChhHHHHHHH-----HHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 150 QAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVN-----EVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 150 ~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~-----~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
+.|.+.+.-.+|.|++.+-+++..+++.+.+|+. .+-+.+.+.+...+..++.++-++
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~L 187 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQL 187 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4444577888999999999999999999988765 466667777888888888776655
No 111
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.22 E-value=29 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=42.7
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+++-+.-++...|+-.++.+..+..-+..+||.|+..|+.++..+.++.+..+
T Consensus 25 ~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f 77 (140)
T 3ldz_A 25 LILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIF 77 (140)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 45556666777777777888889999999999999999999988887765554
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.71 E-value=16 Score=38.54 Aligned_cols=104 Identities=8% Similarity=0.125 Sum_probs=63.4
Q ss_pred HHHhhcCCCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCCC-------chhhHHHHHHHHH
Q psy18014 77 MTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSIT-------DTTMIQAIERYMK 149 (323)
Q Consensus 77 vvkl~~s~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i~-------~~~~~~~l~~~v~ 149 (323)
+++.+.++|...|+-..-++..+.+.++-...+..-+.+ +.++.+|-.|.-+|-+.. +++-.+.+-..+.
T Consensus 21 ~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 21 VVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 344445556667888888888885544322333444444 558889988877776532 3444455555555
Q ss_pred HhccCC---------ChHHHHHHHHHHHhhhcc-----ChhHHHHHHH
Q psy18014 150 QAIVDR---------NSAVSSAAVVSIFHMTKH-----SPDLVKRWVN 183 (323)
Q Consensus 150 ~~L~d~---------~~yVRk~A~~~~~kl~~~-----~p~~v~~~~~ 183 (323)
+.+.+. +++||.+.+.++..+... .|+.+..++.
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~ 145 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIG 145 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHH
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 555442 489999999888876643 4554444333
No 113
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.77 E-value=44 Score=27.24 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 164 VVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
++.+.-++...++-.++.+..+..-+..+||.|+..||.+|..+.++.+..+
T Consensus 36 ~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 36 IMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555666777788888888899999999999999999888765544
No 114
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.47 E-value=33 Score=27.74 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=39.3
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 164 VVSIFHMTKHSPDLVKRWVNEVQEALN-SENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~~~~~l~~~l~-d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
.+.+.-++...++-.++.+..+..-+. .+|+.|+..|+.++..+.++.+..+
T Consensus 37 ~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 37 NMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 444555555566667777888888887 5899999999999999888765554
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=65.41 E-value=1e+02 Score=29.89 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=77.4
Q ss_pred hHHHhHHHHHhhCC--CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHH
Q psy18014 122 DLYRAAAIRALCSI--TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYH 199 (323)
Q Consensus 122 ~~ir~lALr~L~~i--~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~ 199 (323)
+-.+-+|=..+.+. .-|++.+.-......++.|.+.-||+.|+-++..+++. +.+.+..+-|.++|...++.-...
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~ 119 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNL 119 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHH
Confidence 34444444333333 25789999999999999999999999999999999987 889999999999999888755544
Q ss_pred HHHHHHHHHhcCh-hhHHHHHHHHhhccCCChHHHHHHHHHHH
Q psy18014 200 ALGLLYHIRKSDQ-LAVTKLVAKLTKFTMKSPYATCMLIRIVC 241 (323)
Q Consensus 200 al~ll~~l~~~d~-~~~~~lv~~L~~~~~~~~~~~~~llr~~~ 241 (323)
.-..|..+-+.|+ ..+..+..++... ++-.-...|+++.
T Consensus 120 V~~sL~sllk~Dpk~tl~~lf~~i~~~---~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 120 VNNALLSIFKMDAKGTLGGLFSQILQG---EDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHccc---chHHHHHHHHHHH
Confidence 4444444444443 3334444444321 3444445555553
No 116
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=64.38 E-value=40 Score=36.36 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=72.1
Q ss_pred CCchhHHHHHHHHHHhcccCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCC-------CchhhHHHHHHHHHHhccC--
Q psy18014 84 KDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI-------TDTTMIQAIERYMKQAIVD-- 154 (323)
Q Consensus 84 ~d~~lKkl~Ylyl~~~~~~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i-------~~~~~~~~l~~~v~~~L~d-- 154 (323)
.|...|+-..-++..+.+.++....+.-.|. -.+.++.+|-.|+-+|-+. .+++-.+.+-..+.+.+..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~ 102 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGT 102 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSS
T ss_pred CChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhc
Confidence 3777899999999988665544334444454 3566899998888666543 2444455555555555442
Q ss_pred -----CChHHHHHHHHHHHhhhcc-----ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 155 -----RNSAVSSAAVVSIFHMTKH-----SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 155 -----~~~yVRk~A~~~~~kl~~~-----~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
..++||.+++.++..+.+. .|+.+.. +..++.. ++.....++.+|..+
T Consensus 103 ~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~----L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 103 LNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIE----LDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH----HHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCcccchHHHHH----HHHHhcC-CHHHHHHHHHHHHHH
Confidence 4699999999888876643 4555444 4444433 444444555555444
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=64.06 E-value=5.4 Score=35.09 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=24.7
Q ss_pred HhcCCChhHHHHHHHHHHcccCCCHHhHhhHHHHHHHHhcCCChhhHHHHHhhh
Q psy18014 268 CLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321 (323)
Q Consensus 268 ~L~~~~~aV~~ea~k~i~~l~~~~~~~~~~~~~~l~~~L~s~~~niry~aL~~l 321 (323)
.+...+..|-.+++..+ + ...+..+ ..++..+|..|...|
T Consensus 202 Ll~D~d~~VR~~aa~~l---~----------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHA---S----------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGCSSHHHHHHHHHHS---C----------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHcCCCHHHHHHHHHcC---C----------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 34556666666666652 1 2345555 778888888877654
No 118
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=63.41 E-value=59 Score=27.56 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=57.9
Q ss_pred hhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHH
Q psy18014 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWV 182 (323)
Q Consensus 113 l~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~ 182 (323)
+.+=+.|+|+.+|-.|+-.+-.-...+-.+.+.+.+...+.|++-||+|+..=++--+...+|+.+..|+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4556689999999888876655555555677788888899999999999988888889999999998887
No 119
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=63.13 E-value=72 Score=34.07 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=60.1
Q ss_pred hHHHHHh-hCCCc---hhhHHHHHHHHHHhccCC-----ChHHHHHHHHHHHhh---hccChhHHHHHHHHHHHHhcCCC
Q psy18014 126 AAAIRAL-CSITD---TTMIQAIERYMKQAIVDR-----NSAVSSAAVVSIFHM---TKHSPDLVKRWVNEVQEALNSEN 193 (323)
Q Consensus 126 ~lALr~L-~~i~~---~~~~~~l~~~v~~~L~d~-----~~yVRk~A~~~~~kl---~~~~p~~v~~~~~~l~~~l~d~~ 193 (323)
..|++++ +++.+ .+++..+.+.+.+...++ .+-|+.+.+..+++. ...+|+..+..++.+-+.+.+.+
T Consensus 500 ~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~ 579 (1073)
T 3gjx_A 500 CWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETH 579 (1073)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCC
Confidence 5678888 44442 256777888888777666 355666655556543 34579999888999989999999
Q ss_pred hHHHHHHHHHHHHHHhc
Q psy18014 194 VMVQYHALGLLYHIRKS 210 (323)
Q Consensus 194 ~~V~~~al~ll~~l~~~ 210 (323)
+.|+..|...+..+...
T Consensus 580 ~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 580 DGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887666666544
No 120
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=61.05 E-value=61 Score=34.34 Aligned_cols=138 Identities=10% Similarity=0.195 Sum_probs=92.4
Q ss_pred hhhhhHHHHHHhhcCCCchhHHHHHHHHHHhcc--cCcchHhhhhhhhhhcCCCChHHHhHHHHHhhCC-----CchhhH
Q psy18014 69 EATDAFFAMTKLFQSKDVILRRMVYLGIKELSN--IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSI-----TDTTMI 141 (323)
Q Consensus 69 e~s~lf~~vvkl~~s~d~~lKkl~Ylyl~~~~~--~~~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~i-----~~~~~~ 141 (323)
.+.++.+.+..+|--...++|+-.|-.+..+.. .+.++--.|..|.+=+.+|.+ .--++..|+.. .+..-.
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH
Confidence 355888999999999999999999999888854 245555556666666677765 23334555443 344455
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHhhhcc--ChhHHHHHHHHH----HHHhc-CCChH---HHHHHHHHHHHHH
Q psy18014 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKH--SPDLVKRWVNEV----QEALN-SENVM---VQYHALGLLYHIR 208 (323)
Q Consensus 142 ~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~--~p~~v~~~~~~l----~~~l~-d~~~~---V~~~al~ll~~l~ 208 (323)
.-+++-+.++|.+++.-+++++++-+-.+++. +|..+..|++.+ ..... -.+|- |...|+..|....
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 67889999999999988877777766666643 577777765544 43322 24664 4445555555443
No 121
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.40 E-value=51 Score=28.31 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+++-+.-++...++-.++.+..+..-+..+||.|+..||.+|..+.++-+..+
T Consensus 28 ~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 28 SILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 45555556666666667788888888899999999999999988877655443
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=59.56 E-value=1.8e+02 Score=30.78 Aligned_cols=169 Identities=8% Similarity=0.044 Sum_probs=87.4
Q ss_pred CchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhc----c----ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy18014 136 TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK----H----SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI 207 (323)
Q Consensus 136 ~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~----~----~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l 207 (323)
-++++++.+...++..-..++|++|.+|+++...+.+ . .++.++.+.+.+.+.+...+..-..-++-.|--+
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4556777777666555455789999999999875543 2 2356777888888888777643222222222222
Q ss_pred HhcChhhHHHHHHHHhhcc---CCCh-HHHHHHHHHHHHHhhhhhcccCCCCCCchhHHHHHHHHh--cCCChhHHHHHH
Q psy18014 208 RKSDQLAVTKLVAKLTKFT---MKSP-YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL--RHKSETVVYEAA 281 (323)
Q Consensus 208 ~~~d~~~~~~lv~~L~~~~---~~~~-~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~~~~aV~~ea~ 281 (323)
. .+..+..+.+.+...+ ...| -.+..-+..+.++.... -....+++-++. ....+-|...|+
T Consensus 468 g--~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----------p~~v~~il~~i~~n~~e~~EvRiaA~ 535 (1056)
T 1lsh_A 468 G--QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----------PRKVQEIVLPIFLNVAIKSELRIRSC 535 (1056)
T ss_dssp T--CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----------HHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred C--ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc----------hHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 1 1223222222221100 0111 22222232222221111 123444555544 334445555555
Q ss_pred HHHHcc-c--------------CCCHHhHhhHHHHHHHHhcCCChhhHHH
Q psy18014 282 HAIVNL-R--------------RTSARELAPAVSVLQLFCSSPKPVLRFA 316 (323)
Q Consensus 282 k~i~~l-~--------------~~~~~~~~~~~~~l~~~L~s~~~niry~ 316 (323)
..++.- + +.+.++..-+.+.+..+..+.+|..+.+
T Consensus 536 ~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~l 585 (1056)
T 1lsh_A 536 IVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDV 585 (1056)
T ss_dssp HHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 555432 1 1235677888888888888888876543
No 123
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.79 E-value=33 Score=27.52 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=41.9
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+++-+.-++...++-.+..+..+..-+..+||.|+..|+.+|..+.++.+..+
T Consensus 21 ~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f 73 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF 73 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 35556666666677777788888888999999999999999999888766554
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.78 E-value=81 Score=26.72 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 164 VVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 164 ~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
++.+.-++...++-.++.+..+..-+..+||.|+..||.+|..+.++-+..+
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f 77 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPV 77 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHH
Confidence 4556666666676677778888888899999999999999999888765544
No 125
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.26 E-value=35 Score=28.10 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=43.3
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 162 AAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 162 ~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
..++.+.-++...++-.+..+..+..-+..+||.|+..||.+|..+.++.+..+
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F 85 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF 85 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 445566666666777777788889899999999999999999999988866554
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.16 E-value=39 Score=27.19 Aligned_cols=53 Identities=11% Similarity=-0.041 Sum_probs=43.7
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+++-+.-++...++-.+..+..+..-+..+||.|+..|+.++..+.++.+..+
T Consensus 31 ~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f 83 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF 83 (149)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 45666777777787777888889888999999999999999999888776655
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=57.82 E-value=11 Score=33.19 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred hhhhhcCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHHHhcC
Q psy18014 112 SLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNS 191 (323)
Q Consensus 112 sl~kDl~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~~l~d 191 (323)
.+..=++|+++.||..+.+.++ + ..+...+.|.++.||..|+-.+ .+ +.+..++.|
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D 205 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHD 205 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcC
Confidence 4445568999999999999732 2 2344788999999999988652 22 234566778
Q ss_pred CChHHHHHHH
Q psy18014 192 ENVMVQYHAL 201 (323)
Q Consensus 192 ~~~~V~~~al 201 (323)
.++.|-..+.
T Consensus 206 ~d~~VR~~aa 215 (244)
T 1lrv_A 206 PDWTVRLAAV 215 (244)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8877776664
No 128
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=55.31 E-value=6.4 Score=41.86 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=75.5
Q ss_pred hcCCCc-hhHHH-HHHHHHHhccc--Ccc-hHhhhhhhhhhcC-CCChHHHhHHHHH--------hhCCCchhhHHHHHH
Q psy18014 81 FQSKDV-ILRRM-VYLGIKELSNI--AED-VIIVTSSLTKDMT-GKEDLYRAAAIRA--------LCSITDTTMIQAIER 146 (323)
Q Consensus 81 ~~s~d~-~lKkl-~Ylyl~~~~~~--~~~-~lL~iNsl~kDl~-~~N~~ir~lALr~--------L~~i~~~~~~~~l~~ 146 (323)
...+|. ++.++ .+..+..++.. .++ +=.+++.+..-.+ ++|- .|..+|.. +.-+... -.+.+..
T Consensus 769 ~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~ 846 (997)
T 1vsy_5 769 VKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILE 846 (997)
T ss_dssp SSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHH
T ss_pred hhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHH
Confidence 344554 78888 77777766543 333 4467888877776 6777 88888888 5555444 4468889
Q ss_pred HHHHhccCCC-hHHHHHHHHHHHhhhccC-h-hHHHHHHHHHHHHh
Q psy18014 147 YMKQAIVDRN-SAVSSAAVVSIFHMTKHS-P-DLVKRWVNEVQEAL 189 (323)
Q Consensus 147 ~v~~~L~d~~-~yVRk~A~~~~~kl~~~~-p-~~v~~~~~~l~~~l 189 (323)
.|.++|.|+. .-||..|+-++.-+.+-. + ..+++++..+.+..
T Consensus 847 ~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 847 FVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999999999 999999999998887666 5 44445555555443
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.79 E-value=59 Score=27.88 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=41.7
Q ss_pred cchHhhhhhhhhhcCCCChHHHhHHHHHhhC------------CCchhhHHHHHHHHHHhccCCChHHHHHHHH
Q psy18014 104 EDVIIVTSSLTKDMTGKEDLYRAAAIRALCS------------ITDTTMIQAIERYMKQAIVDRNSAVSSAAVV 165 (323)
Q Consensus 104 ~~~lL~iNsl~kDl~~~N~~ir~lALr~L~~------------i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~ 165 (323)
+.+--++.+|.|-++++||.+.-.||..|-. |...++.+.+.+.+.. ..++-|+++++-
T Consensus 41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~---~~~~~Vk~kil~ 111 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR---QVEVNVRNKILY 111 (226)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH---CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc---CCCHHHHHHHHH
Confidence 3467788899999999999988888876533 4566666666665542 355778777544
No 130
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.31 E-value=1.5e+02 Score=27.16 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=73.2
Q ss_pred hhhhhhhcCCCChHHHhHHHHHhhCCCch-----hhH--HHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh---hHHH
Q psy18014 110 TSSLTKDMTGKEDLYRAAAIRALCSITDT-----TMI--QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP---DLVK 179 (323)
Q Consensus 110 iNsl~kDl~~~N~~ir~lALr~L~~i~~~-----~~~--~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p---~~v~ 179 (323)
.+.|.+=..+...-+.+-|||++..++.- .++ +.+++-|-..+.+.++-|-|.|.-=+..+....+ .++.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 33444444555777899999999999887 555 4577778888888889999987654444433322 2333
Q ss_pred HH------------HHHHHHHhc---CCChHHHHHHHHHHHHHHhc--ChhhHHHHHHHHh
Q psy18014 180 RW------------VNEVQEALN---SENVMVQYHALGLLYHIRKS--DQLAVTKLVAKLT 223 (323)
Q Consensus 180 ~~------------~~~l~~~l~---d~~~~V~~~al~ll~~l~~~--d~~~~~~lv~~L~ 223 (323)
+- ...+...|. ..|..++.+|++++..+-.. |+....+++..|.
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le 302 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALE 302 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 22 224556665 56788899999988765332 3333455555443
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=46.60 E-value=1.3e+02 Score=25.63 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=51.5
Q ss_pred cCCCChHHHhHHHHHhhCCCchhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHH
Q psy18014 117 MTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184 (323)
Q Consensus 117 l~~~N~~ir~lALr~L~~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~ 184 (323)
..|+|+.+|-.|+-.+-.....+-.+.+...+...+.|++.||+|+..=++--+...+|+.+..|+..
T Consensus 140 ~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 140 IASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQN 207 (232)
T ss_dssp HHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 36778888888876665544444456677778888888999999988888888888889888777764
No 132
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=44.34 E-value=58 Score=26.01 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccChhHH
Q psy18014 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV 178 (323)
Q Consensus 139 ~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v 178 (323)
+.++.+...|-+-|.+++|+|.-+|+-.+-+|++..++.+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 5567777777777777777777777777777776555443
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.88 E-value=42 Score=27.02 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=38.9
Q ss_pred chHhhhhhhhhhcCCCChHHHhHHHHHhh------------CCCchhhHHHHHHHHHHhccC------CChHHHHHHHHH
Q psy18014 105 DVIIVTSSLTKDMTGKEDLYRAAAIRALC------------SITDTTMIQAIERYMKQAIVD------RNSAVSSAAVVS 166 (323)
Q Consensus 105 ~~lL~iNsl~kDl~~~N~~ir~lALr~L~------------~i~~~~~~~~l~~~v~~~L~d------~~~yVRk~A~~~ 166 (323)
..--++.+|.|-++|+||.+.-.||..|- -|...++.+.+ .+.+.+ .++-||.+.+-.
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL----~kl~~~k~~~~~~~~~Vk~kil~l 120 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL----IKVVSPKYLGSRTSEKVKNKILEL 120 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH----HHHHCTTTTGGGSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH----HHHHcccccCCCCCHHHHHHHHHH
Confidence 35678889999999999999888887653 23444444444 444432 467788885543
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.63 E-value=96 Score=26.25 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=37.6
Q ss_pred chHhhhhhhhhhcCCCChHHHhHHHHHhh------------CCCchhhHHHHHHHHHHhccCCChHHHHHHH
Q psy18014 105 DVIIVTSSLTKDMTGKEDLYRAAAIRALC------------SITDTTMIQAIERYMKQAIVDRNSAVSSAAV 164 (323)
Q Consensus 105 ~~lL~iNsl~kDl~~~N~~ir~lALr~L~------------~i~~~~~~~~l~~~v~~~L~d~~~yVRk~A~ 164 (323)
..--++-+|.|=++++||.+.-.||..|- -|...++.+.+...+.+ ..++-||++++
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil 107 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKML 107 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHH
Confidence 45667778888899999988888886553 24455555655554443 45567777643
No 135
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=33.45 E-value=2.2e+02 Score=24.17 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=53.4
Q ss_pred HHHHHHhccCCChHHHHHHHH----HHHhhhcc--ChhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcChhhHHHH
Q psy18014 145 ERYMKQAIVDRNSAVSSAAVV----SIFHMTKH--SPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKL 218 (323)
Q Consensus 145 ~~~v~~~L~d~~~yVRk~A~~----~~~kl~~~--~p~~v~~~~~~l~~~l~d~~~~V~~~al~ll~~l~~~d~~~~~~l 218 (323)
...+.+-+.|.+.++|+.|+. -+...... +.+....++..+...+.|.+..|..+.--.|.++-+.++....+.
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~a 189 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKA 189 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 345677888999999999999 33443322 234556778888888889988888777667778877777665444
Q ss_pred HH
Q psy18014 219 VA 220 (323)
Q Consensus 219 v~ 220 (323)
+.
T Consensus 190 l~ 191 (235)
T 1t06_A 190 VE 191 (235)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 136
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=29.16 E-value=34 Score=26.81 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=22.4
Q ss_pred HHHhccCCChHHHHHHHHHHHhhhccChhHHHHHHHHHHH
Q psy18014 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQE 187 (323)
Q Consensus 148 v~~~L~d~~~yVRk~A~~~~~kl~~~~p~~v~~~~~~l~~ 187 (323)
+..++.|++++||=.|+...++ .+|+-.++.+.++.+
T Consensus 62 Ll~Ll~H~n~~VRl~AA~~~L~---~~p~~A~~vLe~ia~ 98 (123)
T 2i9c_A 62 LLSLFEYPNMQVRLQAAKLTLA---VAPVKAREQLEAIVS 98 (123)
T ss_dssp GGGGGGSSCHHHHHHHHHTTTT---TCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHh---hChHHHHHHHHHHHh
Confidence 4456777888887776643333 466666555555543
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.04 E-value=2.1e+02 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Q psy18014 179 KRWVNEVQEALNSENVMVQYHALGL 203 (323)
Q Consensus 179 ~~~~~~l~~~l~d~~~~V~~~al~l 203 (323)
++|++++..++...++.|.--.+.+
T Consensus 84 ~~Fl~el~~l~~~~~~~Vk~kil~l 108 (140)
T 3ldz_A 84 RDFASEVSNVLNKGHPKVCEKLKAL 108 (140)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3577777666654454444444433
No 138
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=28.48 E-value=92 Score=30.10 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHhhhccChh---HHHH--HHHHHHHHhcCCChHHHHHHHHHHHH
Q psy18014 155 RNSAVSSAAVVSIFHMTKHSPD---LVKR--WVNEVQEALNSENVMVQYHALGLLYH 206 (323)
Q Consensus 155 ~~~yVRk~A~~~~~kl~~~~p~---~v~~--~~~~l~~~l~d~~~~V~~~al~ll~~ 206 (323)
++|-+---||.=++...+.+|+ ++++ ....+++++.+.|+.|.++|+-.+-.
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4577777777777788888886 4444 56788999999999999999865443
No 139
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=27.30 E-value=81 Score=33.96 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=59.9
Q ss_pred CChHHHhHHHHHhhCC-----CchhhHHHHHHHHHHhccCC------------ChHHHHHHHHHHHhhhccChhHH----
Q psy18014 120 KEDLYRAAAIRALCSI-----TDTTMIQAIERYMKQAIVDR------------NSAVSSAAVVSIFHMTKHSPDLV---- 178 (323)
Q Consensus 120 ~N~~ir~lALr~L~~i-----~~~~~~~~l~~~v~~~L~d~------------~~yVRk~A~~~~~kl~~~~p~~v---- 178 (323)
.+|.+|.-++.+++.+ ..|++++.+...|-.++.+. +..||..|+.|+.++....|+..
T Consensus 544 ~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~ 623 (1204)
T 3a6p_A 544 KDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNF 623 (1204)
T ss_dssp SCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4788888888866422 35788999999999998873 34899999999999998887755
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHH
Q psy18014 179 KRWVNEVQEALNS------ENVMVQYHALGLL 204 (323)
Q Consensus 179 ~~~~~~l~~~l~d------~~~~V~~~al~ll 204 (323)
+.+...+..++.. .+....+.|+.++
T Consensus 624 ~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i 655 (1204)
T 3a6p_A 624 DMLYNHVKQLLSNELLLTQMEKCALMEALVLI 655 (1204)
T ss_dssp HHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHHHHHHH
Confidence 3455555555442 2335566666554
No 140
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=24.45 E-value=2.4e+02 Score=29.03 Aligned_cols=54 Identities=7% Similarity=0.214 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHhccCCChHHHHHHHHHHHhhhccCh---hHH-HHHHHHHHHHhcC
Q psy18014 138 TTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP---DLV-KRWVNEVQEALNS 191 (323)
Q Consensus 138 ~~~~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~~~~p---~~v-~~~~~~l~~~l~d 191 (323)
..+++.+.+.+..++-+++..|...+..|+-.|....| ++| ...++++...|..
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~ 391 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLAD 391 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhcc
Confidence 56788888999999999999999999999999998788 976 5788888888876
No 141
>2bcx_B Ryanodine receptor 1; EF-hand, type-2 turn, calcium binding protein; 2.00A {Gallus gallus}
Probab=23.90 E-value=43 Score=19.51 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhcc
Q psy18014 158 AVSSAAVVSIFHMTKH 173 (323)
Q Consensus 158 yVRk~A~~~~~kl~~~ 173 (323)
.=||.|++++.+..+.
T Consensus 13 ~qRKRaVvacfrm~pL 28 (30)
T 2bcx_B 13 KQRRRAVVACFRMTPL 28 (30)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhccc
Confidence 4589999999887553
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=23.54 E-value=44 Score=32.34 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=24.4
Q ss_pred HHHHHhccCCChHHHHHHHHHHHhhhcc
Q psy18014 146 RYMKQAIVDRNSAVSSAAVVSIFHMTKH 173 (323)
Q Consensus 146 ~~v~~~L~d~~~yVRk~A~~~~~kl~~~ 173 (323)
.-|.+.+.|++|.||+.|+.|+.++...
T Consensus 450 ~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 450 ADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5578899999999999999999998643
No 143
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=21.73 E-value=2.8e+02 Score=22.04 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=38.4
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhcChhhH
Q psy18014 163 AVVSIFHMTKHSPDLVKRWVNEVQEALNS-ENVMVQYHALGLLYHIRKSDQLAV 215 (323)
Q Consensus 163 A~~~~~kl~~~~p~~v~~~~~~l~~~l~d-~~~~V~~~al~ll~~l~~~d~~~~ 215 (323)
+++-+.-++...++-.++.+..+..-+.. .|+.++..|+.+|..+.++.+..+
T Consensus 36 ~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~f 89 (152)
T 3rru_A 36 QFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSF 89 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 45555555666666677777788777774 588888889999888877766554
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.81 E-value=3.3e+02 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHH
Q psy18014 179 KRWVNEVQEALNS-ENVMVQYHALGLL 204 (323)
Q Consensus 179 ~~~~~~l~~~l~d-~~~~V~~~al~ll 204 (323)
++|++++..++.. .++.|.--.+.++
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 3577777776654 3445554444443
No 145
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=20.24 E-value=5e+02 Score=23.73 Aligned_cols=107 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHhhh--ccChhHHHHHHHH------HHHHhcCCChHHHHHHHHHHHHHHhcCh
Q psy18014 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMT--KHSPDLVKRWVNE------VQEALNSENVMVQYHALGLLYHIRKSDQ 212 (323)
Q Consensus 141 ~~~l~~~v~~~L~d~~~yVRk~A~~~~~kl~--~~~p~~v~~~~~~------l~~~l~d~~~~V~~~al~ll~~l~~~d~ 212 (323)
.+.+.....+++.+.|.-.|+-++-=++.+. +.+..+..+|+.. +..+|.|....+++.|..+.--...+..
T Consensus 207 yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 207 YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Q ss_pred hhHHHHHHHHhhccCCChHHHHHHHHHHHHHhhhhhcccCCCCCCchhHHH
Q psy18014 213 LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFD 263 (323)
Q Consensus 213 ~~~~~lv~~L~~~~~~~~~~~~~llr~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
.+. .++..|..++ -.||+++..+..+..++ ++|.+
T Consensus 287 K~~-~I~~IL~~Nr-------~kLl~fl~~f~~d~~eD--------eqF~d 321 (341)
T 1upk_A 287 KTQ-PILDILLKNQ-------AKLIEFLSKFQNDRTED--------EQFND 321 (341)
T ss_dssp CCH-HHHHHHHHTH-------HHHHHHHHHTTTTC-CC--------SHHHH
T ss_pred CCh-HHHHHHHHHH-------HHHHHHHHhCCCCCcch--------hhHHH
Done!