RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18014
(323 letters)
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 241 bits (618), Expect = 6e-76
Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 21/304 (6%)
Query: 28 KTAVLQE-ARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDV 86
+ + QE AR N +P+K + K++YLI GE + + FF + KL S D
Sbjct: 1 RKRIQQELARILNSFRDDPRKKKEAVKKLIYLIMLGE-----DISFLFFEVVKLVASNDF 55
Query: 87 ILRRMVYLGIKELSNIAEDV-IIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIE 145
L+R+ YL +K L+ + D+ I+VT+S+ KD+ L R A+R L I + + +
Sbjct: 56 TLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLA 115
Query: 146 RYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRW-VNEVQEALNSENVMVQYHALGLL 204
+K+ +VDR+ V A ++I + + PDLV+ + V E++E L+ ++ V A+ LL
Sbjct: 116 PDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALL 175
Query: 205 YHIRKSDQLAVTKLVAKLTK-----FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNS 259
Y IRK+D+L + KL+ L + T+ +P+ ++R++ + Q+
Sbjct: 176 YEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVKILRLLTRYA-PQDPREPK------ 228
Query: 260 PLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVR 319
L + + L++ + V+YEA I++L + AV+ L SSP LR+ A+R
Sbjct: 229 ELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPEL-IVLAVNALGRLLSSPDENLRYVALR 287
Query: 320 TLNK 323
LNK
Sbjct: 288 NLNK 291
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit
[Intracellular trafficking and secretion].
Length = 898
Score = 239 bits (612), Expect = 2e-72
Identities = 117/336 (34%), Positives = 178/336 (52%), Gaps = 38/336 (11%)
Query: 15 RYKRTGNP--FQNLDKTAVLQEAR-TFNDTPVNPKKCTHILTKILYLINQGEQLGTQEAT 71
YK+ F L + +LQ+ +FN +PV+ + +L+ + YL++ GE AT
Sbjct: 5 TYKKFMKTKVFTTLTERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATAT 64
Query: 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDM-TGKEDLYRAAAIR 130
+ FFA+ KLFQ KD+ LR+ VY IKELS + EDV++ TSS+ KD+ G D + AIR
Sbjct: 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLNGGVPDDVKPMAIR 124
Query: 131 ALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALN 190
+L S+ D + ERY+ QA V + A SAA+V +H+ ++ + KRW+NE QEA+
Sbjct: 125 SLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVL 184
Query: 191 S----------------ENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTK-FTMKSPYAT 233
N + QYHALGLLY +++D++A KLV +MK+ A
Sbjct: 185 DLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAG 244
Query: 234 CMLIRIVCKLIEDQNAASGDTNWSNSPLFD----YLETCLRHKSETVVYEAAHAIVNL-- 287
+L+R +L+++ NS +L + L K E V EAA A+ L
Sbjct: 245 VLLVRATVELLKE-----------NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSE 293
Query: 288 RRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323
++ + VS L+ F S + VLRF+A+R LN+
Sbjct: 294 ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQ 329
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits
[Intracellular trafficking and secretion].
Length = 757
Score = 47.0 bits (112), Expect = 7e-06
Identities = 20/103 (19%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 78 TKLFQSKDVILRRMVYLGIKELSNIAED-VIIVTSSLTKDMTGKEDLYRAAAIRALCSIT 136
K ++DV L+R++YL ++ + + + ++ +++ KD+ + R A+R L +
Sbjct: 61 IKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR 120
Query: 137 DTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK 179
++ I +K+ + D ++ V A +++ + + DL
Sbjct: 121 VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH 163
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 36.1 bits (83), Expect = 0.025
Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 5 KAKAPIQQLLRYKRTGNPFQNLDK---TAVLQEARTFNDTPVNPKKCTHILTKILYLINQ 61
KA+ IQ+ L +TG+ + + A LQ D+ I+
Sbjct: 7 KARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIA-------- 58
Query: 62 GEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI---AEDVIIVTSSLTKDMT 118
+G ++ + F + KL S D+ L+++VYL + LS E ++ ++ +D T
Sbjct: 59 NMTMG-RDVSYLFVDVVKLAPSTDLELKKLVYLYV--LSTARLQPEKALLAVNTFLQDTT 115
Query: 119 GKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV 178
+ RA A+R + I +++++ +++A+ D + V A + + + L
Sbjct: 116 NSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF 175
Query: 179 KR--WVNEVQEALNSENVMVQYHALGLL 204
+ + ++ E LN N +V +A ++
Sbjct: 176 YQQDFKKDLVELLNDNNPVVASNAAAIV 203
>gnl|CDD|190182 pfam01981, PTH2, Peptidyl-tRNA hydrolase PTH2. Peptidyl-tRNA
hydrolases are enzymes that release tRNAs from
peptidyl-tRNA during translation.
Length = 116
Score = 32.9 bits (76), Expect = 0.062
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 148 MKQAIVDRN----------SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ--EAL--NSEN 193
K +V R + + AAV + K +P+L+K W+ E Q L NSE
Sbjct: 2 YKMVLVVRTDLKMGKGKIAAQCAHAAVGAYKKALKANPELLKAWLREGQKKIVLKVNSEE 61
Query: 194 VMVQY----HALGLLYHI 207
+++ +LGL +
Sbjct: 62 ELLELKEKAKSLGLPTSL 79
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 32.5 bits (75), Expect = 0.14
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 156 NSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYH 206
+ + + AV+++ + P+LV+ + + L E+ V+ AL +L H
Sbjct: 1 DPLIRNNAVIALGDLCIRYPNLVEPYTPNLYACLRDEDPYVRKTALLVLTH 51
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 28.8 bits (65), Expect = 0.98
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 265 LETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323
LE L V AA A+ L A + L P P +R AA L K
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGDPEA------LPALLELLKDPDPEVRRAAAEALGK 57
Score = 27.7 bits (62), Expect = 2.4
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 255 NWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLR 314
+ L L+ V AA A+ L A +L+L V+R
Sbjct: 26 ELGDPEALPALLELLKDPDPEVRRAAAEALGKLGDPEALPA-----LLELLQDDDDAVVR 80
Query: 315 FAAVRTL 321
AA L
Sbjct: 81 AAAASAL 87
Score = 27.3 bits (61), Expect = 3.1
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 80 LFQSKDVILRRMVYLGIKELSN-IAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT 138
L D +R + EL + A ++ L KD + R AA AL + D
Sbjct: 8 LLSDPDPEVRAAAARALGELGDPEALPALL---ELLKD---PDPEVRRAAAEALGKLGDP 61
Query: 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSI 167
+ A+ ++ D ++ V +AA ++
Sbjct: 62 EALPALLELLQD---DDDAVVRAAAASAL 87
>gnl|CDD|161803 TIGR00283, arch_pth2, peptidyl-tRNA hydrolase. This model
describes an archaeal/eukaryotic form of peptidyl-tRNA
hydrolase. Most bacterial forms are described by
TIGR00447 [Protein synthesis, Other].
Length = 115
Score = 29.0 bits (65), Expect = 1.3
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 148 MKQAIVDRN----------SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ 186
MK IV R+ + V AA++ + +P L ++W++E Q
Sbjct: 1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQ 49
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 30.2 bits (68), Expect = 1.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 289 RTSARELAPAVSVLQLFCSSPKPVLRFAA 317
R++A +AP ++ LQ C++P PVLR A
Sbjct: 31 RSNAVSVAPILTKLQKDCATPLPVLRHVA 59
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 28.8 bits (65), Expect = 1.7
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 264 YLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAV--SVLQLFC---SSPKPVLRFAAV 318
L + L E V EAA A+ NL + + V L S + AA+
Sbjct: 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70
Query: 319 RTL 321
L
Sbjct: 71 WAL 73
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional.
Length = 291
Score = 29.4 bits (66), Expect = 2.2
Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 142 QAIERYMK----QAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWV---NEV-QEALNSE 192
+ ++ Y+ +A+V+ N+A A +V++ + T+++ +L+++W N+ QEA+ +E
Sbjct: 221 KLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTE 279
>gnl|CDD|193545 cd05669, M20_Acy1_YxeP_like, M20 Peptidase Aminoacyclase-1
YxeP-like proteins, including YxeP, YtnL, YjiB and
HipO2. Peptidase M20 family, Aminoacyclase-1 YxeP-like
subfamily including YxeP, YtnL, YjiB and HipO2, most of
which have not been well characterized to date.
N-terminal acetylation of proteins is a widespread and
highly conserved process that is involved in the
protection and stability of proteins. Several types of
aminoacylases can be distinguished on the basis of
substrate specificity; substrates include indoleacetic
acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino
acids and aminobenzoylglutamate. ACY1 breaks down
cytosolic aliphatic N-acyl-alpha-amino acids (except
L-aspartate), especially N-acetyl-methionine and
acetyl-glutamate into L-amino acids and an acyl group.
However, ACY1 can also catalyze the reverse reaction,
the synthesis of acetylated amino acids. ACY1 may also
play a role in xenobiotic bioactivation as well as in
the inter-organ processing of amino acid-conjugated
xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine). ACY1 appears to
physically interact with Sphingosine kinase type 1
(SphK1) and may influence its physiological functions;
SphK1 and its product sphingosine-1-phosphate have been
shown to promote cell growth and inhibit apoptosis of
tumor cells. Strong expression of the human gene and its
mouse ortholog Acy1 in brain, liver, and kidney suggest
a role of the enzyme in amino acid metabolism of these
organs.
Length = 372
Score = 28.7 bits (65), Expect = 3.7
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 135 ITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFH 169
+ + +I ++ Q IV RN + +AVVS+ H
Sbjct: 198 VAASQIINSL-----QTIVSRNISPLESAVVSVTH 227
>gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional.
Length = 249
Score = 28.4 bits (64), Expect = 5.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 276 VVYEAAHA-IVNLRRTSARELAPAVSV 301
VY AA A + L R+ A ELAP V V
Sbjct: 154 PVYCAAKAALEMLTRSLALELAPEVRV 180
>gnl|CDD|131732 TIGR02685, pter_reduc_Leis, pteridine reductase. Pteridine
reductase is an enzyme used by trypanosomatids
(including Trypanosoma cruzi and Leishmania major) to
obtain reduced pteridines by salvage rather than
biosynthetic pathways. Enzymes in T. cruzi described as
pteridine reductase 1 (PTR1) and pteridine reductase 2
(PTR2) have different activity profiles. PTR1 is more
active with with fully oxidized biopterin and folate
than with reduced forms, while PTR2 reduces
dihydrobiopterin and dihydrofolate but not oxidized
pteridines. T. cruzi PTR1 and PTR2 are more similar to
each other in sequence than either is to the pteridine
reductase of Leishmania major, and all are included in
this family.
Length = 267
Score = 28.0 bits (62), Expect = 6.8
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 210 SDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCL 269
D+ ++ VA+L +PY LI+ + A TN S L D + T
Sbjct: 110 GDKKSLEVQVAELFGSNAIAPY---FLIKAFAQRQAGTRAEQRSTNLSIVNLCDAM-TDQ 165
Query: 270 RHKSETVVYEAAHAIVNLRRTSARELAP 297
T+ A HA+ L R++A ELAP
Sbjct: 166 PLLGFTMYTMAKHALEGLTRSAALELAP 193
>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate
dehydrogenase; Provisional.
Length = 263
Score = 27.6 bits (62), Expect = 9.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 276 VVYEAA-HAIVNLRRTSARELAPAVSV 301
+Y A+ HA+V L R A ELAP + V
Sbjct: 154 PLYTASKHAVVGLVRQLAYELAPKIRV 180
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 27.7 bits (62), Expect = 9.6
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 247 QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAV 299
A + N LF L K+ VY ++L R
Sbjct: 505 YFAQELSYSHDN--LFHSLLGVSGVKTGIRVYNNILDKLDLCRRPTVPYEDKN 555
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.131 0.369
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,838,737
Number of extensions: 1478267
Number of successful extensions: 1241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 32
Length of query: 323
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 226
Effective length of database: 6,635,264
Effective search space: 1499569664
Effective search space used: 1499569664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)