RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18014
(323 letters)
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 305 bits (783), Expect = e-103
Identities = 213/303 (70%), Positives = 257/303 (84%), Gaps = 6/303 (1%)
Query: 21 NPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKL 80
NPFQ+L+K+AVLQEAR FN+TP+NP+KC HILTKILYLINQGE LGT EAT+AFFAMTKL
Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76
Query: 81 FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
FQS D LRRM YL IKE+S IAEDVIIVTSSLTKDMTGKED YR A+RALC ITD+TM
Sbjct: 77 FQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM 136
Query: 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
+QAIERYMKQAIVD+ +VSS+A+VS H+ K S D+VKRWVNE QEA +S+N+MVQYHA
Sbjct: 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHA 196
Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSP 260
LGLLYH+RK+D+LAV+K+++K T+ +KSP+A CM+IR+ + +ED++ + +SP
Sbjct: 197 LGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------RDSP 250
Query: 261 LFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRT 320
LFD++E+CLR+K E VVYEAA AIVNL SA+ELAPAVSVLQLFCSSPK LR+AAVRT
Sbjct: 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRT 310
Query: 321 LNK 323
LNK
Sbjct: 311 LNK 313
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 193 bits (493), Expect = 2e-57
Identities = 48/319 (15%), Positives = 121/319 (37%), Gaps = 29/319 (9%)
Query: 20 GNPFQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTK 79
F K + + N+ +K + K++ + G+ + + F +
Sbjct: 4 SKYFTTNKKGEIFELKAELNNEKKEKRKEA--VKKVIAAMTVGK-----DVSSLFPDVVN 56
Query: 80 LFQSKDVILRRMVYLGIKELSNIAEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDT 138
Q+ ++ L+++VYL + + D+ I +S KD L RA A+R + I
Sbjct: 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD 116
Query: 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKR--WVNEVQEALNSENVMV 196
+ + + +++ + D + V A V + + + +V+ +++ +++ + N MV
Sbjct: 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMV 176
Query: 197 QYHALGLLYHIRKSDQLAVTKLVAK------LTKFTMKSPYATCMLIRIVCKLIEDQNAA 250
+A+ L I +S + + LT + + ++ + +
Sbjct: 177 VANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE 236
Query: 251 SGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQ------L 304
+ + + + L H + VV A ++ ++ +L+ +
Sbjct: 237 AQS-------ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289
Query: 305 FCSSPKPVLRFAAVRTLNK 323
S +P +++ A+R +N
Sbjct: 290 TLLSGEPEVQYVALRNINL 308
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 101 bits (253), Expect = 5e-24
Identities = 54/314 (17%), Positives = 123/314 (39%), Gaps = 32/314 (10%)
Query: 32 LQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRM 91
R+ N +C ++ K+LY+ G A KL S+ +R+
Sbjct: 36 CAAIRSSFREEDNTYRCRNVA-KLLYMHMLGY-----PAHFGQLECLKLIASQKFTDKRI 89
Query: 92 VYLGIKELSNIAEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQ 150
YLG L + +DV + +T+ + D+ + A+ L + + M + + +++
Sbjct: 90 GYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEK 149
Query: 151 AIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKS 210
+ NS + A + H+ + P+L++ ++ + LN +N V + ++ LL + +
Sbjct: 150 LLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209
Query: 211 D-------------------QLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS 251
L ++ + + P+ ++R++ L + + +S
Sbjct: 210 SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS 269
Query: 252 GDTNWSNSPLFDYLETCLRHKS--ETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSP 309
N L K+ ++YE I++++ S A+++L F +
Sbjct: 270 EAM---NDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG-LRVLAINILGRFLLNN 325
Query: 310 KPVLRFAAVRTLNK 323
+R+ A+ +L K
Sbjct: 326 DKNIRYVALTSLLK 339
Score = 36.4 bits (84), Expect = 0.011
Identities = 22/194 (11%), Positives = 65/194 (33%), Gaps = 12/194 (6%)
Query: 128 AIRALCSI-TDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ 186
+ + I +++ + + + +++ + + A+ S+ + + V+R + +
Sbjct: 297 TVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIV 356
Query: 187 EALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIED 246
+ L +V ++ A+ L + + + + ++ +L F +
Sbjct: 357 DCLKDLDVSIKRRAMELSFAL--VNGNNIRGMMKELLYFLDSCEPE--FKADCASGIFLA 412
Query: 247 QNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL--RRTSARELA-PAVSVLQ 303
+ W D + L V +A ++ L +
Sbjct: 413 AEKYAPSKRW----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAI 468
Query: 304 LFCSSPKPVLRFAA 317
L S +P+++ AA
Sbjct: 469 LGDYSQQPLVQVAA 482
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 81.9 bits (202), Expect = 2e-17
Identities = 54/316 (17%), Positives = 121/316 (38%), Gaps = 37/316 (11%)
Query: 39 NDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKE 98
D ++ + K+L++ G + L S +++ YL I
Sbjct: 46 GDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISV 100
Query: 99 LSNIAEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNS 157
L N ++I + +++ D+ + + A+ + ++ M +A + + +V ++
Sbjct: 101 LVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT 160
Query: 158 A--VSSAAVVSIFHMTKHSPDLVKR--WVNEVQEALNSENVMVQYHALGLLYHIRKSD-- 211
V +A + + + + SPDLV W + V LN +++ V A L+ + + +
Sbjct: 161 MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220
Query: 212 --QLAVTKLVAKLTKFTMK--------------SPYATCMLIRIVCKLI--EDQNAASGD 253
+ +V+ V++L++ +P+ + L+R++ ED
Sbjct: 221 EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL 280
Query: 254 TNWSNSPLFDYLETCLRHKSET------VVYEAAHAIVNLRRTSARELAPAVSVLQLFCS 307
T + L E K + V++EA I++ L A + L F
Sbjct: 281 TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP-NLLVRACNQLGQFLQ 339
Query: 308 SPKPVLRFAAVRTLNK 323
+ LR+ A+ ++
Sbjct: 340 HRETNLRYLALESMCT 355
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 52.0 bits (124), Expect = 5e-08
Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 13/231 (5%)
Query: 96 IKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITD---TTMIQAIERYMKQAI 152
I ++ E V+ L + + AI + I +++
Sbjct: 23 ILIMAKYDESVL---KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK 79
Query: 153 VDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQ 212
++ + M K P+LVK + + + + + L I K++
Sbjct: 80 KSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP 139
Query: 213 LAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHK 272
+ + +V + + + + + +P + L
Sbjct: 140 MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKY------VNPFLPRIINLLHDG 193
Query: 273 SETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTLNK 323
E V A A+V+L + + L V + ++ +++
Sbjct: 194 DEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISR 243
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 50.6 bits (121), Expect = 2e-07
Identities = 42/259 (16%), Positives = 78/259 (30%), Gaps = 37/259 (14%)
Query: 68 QEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNI-AEDVIIVTSSLTKDMTGKEDLYRA 126
Q + +L + + R + L +D + + D K + R
Sbjct: 19 QCKKLNDDELFRLLDDHNSLKRISS---ARVLQLRGGQDAVRLAIEFCSD---KNYIRRD 72
Query: 127 AAIRALCSITDTTMI--QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184
L I A+ D+++ V + A+ S K +P + V +
Sbjct: 73 IGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQ 132
Query: 185 VQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLI 244
Q ++ V+ + I D+ + L+ L K P +R
Sbjct: 133 SQITAFDKSTNVRRATAFAISVIN--DKATIPLLINLL-----KDPNGD---VR------ 176
Query: 245 EDQNAAS--GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVL 302
AA + NS + D L+ K+E V EA + + R L+ L
Sbjct: 177 --NWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--DKRVLSVLCDEL 232
Query: 303 QLFCSSPKPVLRFAAVRTL 321
+ K + +
Sbjct: 233 K------KNTVYDDIIEAA 245
Score = 49.8 bits (119), Expect = 3e-07
Identities = 36/264 (13%), Positives = 74/264 (28%), Gaps = 32/264 (12%)
Query: 63 EQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKED 122
L + DA + K+ I R + + ++ + V + L +
Sbjct: 45 RVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKS 104
Query: 123 LY-RAAAIRALCSITDTTMIQ--AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK 179
RA AI + I I + D+++ V A +I + K
Sbjct: 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------K 158
Query: 180 RWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRI 239
+ + L N V+ A + + + V L + +R
Sbjct: 159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEML-----QDKNE---EVR- 209
Query: 240 VCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAV 299
A G + + + L L+ TV + A L + +
Sbjct: 210 -------IEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGELGDKTLLPV---- 256
Query: 300 SVLQLFCSSPKPVLRFAAVRTLNK 323
+ + + +A+ L +
Sbjct: 257 -LDTMLYKFDDNEIITSAIDKLKR 279
Score = 34.4 bits (79), Expect = 0.032
Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 24/170 (14%)
Query: 156 NSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAV 215
N+ A + +E+ L+ N + + + +L Q AV
Sbjct: 3 NTYQKRKASKEYGLYNQCKKLND----DELFRLLDDHNSLKRISSARVLQLRG--GQDAV 56
Query: 216 TKLVAKLTKFTMKSPYATCMLIRIVC----KLIEDQNAASGDTNWSNSPLFDYLETCLRH 271
+ + R + I+ + L
Sbjct: 57 RLAIEFC-----SDKNY---IRRDIGAFILGQIKICKKCEDNV------FNILNNMALND 102
Query: 272 KSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321
KS V A + + + V Q+ +R A +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAI 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 4e-07
Identities = 55/327 (16%), Positives = 95/327 (29%), Gaps = 89/327 (27%)
Query: 3 KLKAKA---PIQQLLRYKRTGNPFQNLDKTAVLQEA-RTFNDTP-----VNPKKCTHILT 53
L K Q L R T NP + +++ E+ R T VN K T I+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPR----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 54 KILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSL 113
L L E F ++ +F + ++ L + I DV++V + L
Sbjct: 361 SSL------NVLEPAEYRKMFDRLS-VFP-PSAHIPTIL-LSLIWFDVIKSDVMVVVNKL 411
Query: 114 TK----DMTGKEDLYR--AAAIRALCSITDTTMI--QAIERYMKQAIVDRNSAVSSAAVV 165
K + KE + + + + + ++ Y D + +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 166 SIF-----HMTKHSP------------DLVKRWV-----------NEVQEALNSENVMVQ 197
+ H+ D R++ N LN+ +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 198 YHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWS 257
Y +I +D +LV + F L +I LI
Sbjct: 530 YKP-----YICDNDP-KYERLVNAILDF----------LPKIEENLI------------- 560
Query: 258 NSPLFDYLETCLRHKSETVVYEAAHAI 284
S D L L + E + EA +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 50.2 bits (119), Expect = 6e-07
Identities = 52/353 (14%), Positives = 110/353 (31%), Gaps = 93/353 (26%)
Query: 11 QQLLRYKRTGNPFQ-----NLDKTAVLQEARTFNDTPVNPKKCTHIL------TKILYLI 59
+ +YK + F+ N D V ++ ++ ++ HI+ + L L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDAVSGTLRLF 68
Query: 60 ----NQGEQ-----LGTQEATDAFFAMTKL-FQSKDVILRRMVYLGIKELSNIAEDVIIV 109
++ E+ + + F M+ + + + + +Y I++ + D
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQRDRLYNDN--- 123
Query: 110 TSSLTKDMTGKEDLYRAAAIR-ALCSITDTTMIQAIERY-----M----KQAIVDRNSAV 159
K + Y +R AL + + + K +
Sbjct: 124 -QVFAKYNVSRLQPYLK--LRQALLELRP-------AKNVLIDGVLGSGKTWVA--LDVC 171
Query: 160 SSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRK-----SDQLA 214
S V + W+N ++ + E V+ L LY I SD +
Sbjct: 172 LSYKVQCKM------DFKI-FWLN-LKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSS 221
Query: 215 VTKLV-----AKLTKFTMKSPYATCMLI-------RIV------CK-LIEDQNAASGD-- 253
KL A+L + PY C+L+ + CK L+ + D
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 254 --TNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN-LRRTSARELAP-AVSVL 302
++ L + T + ++++ + L R P +S++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSII 333
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 43.1 bits (102), Expect = 3e-05
Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 70/261 (26%)
Query: 63 EQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKED 122
+ K Q +RR L I ++ + L K + ++
Sbjct: 5 HHHHHHTDPEKVEMYIKNLQDDSYYVRRAA---AYALGKIGDERAV--EPLIKALKDEDA 59
Query: 123 LYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWV 182
R AA AL I D ++ + + +K D + V +A V++ + +R V
Sbjct: 60 WVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSAAVALGQIGD------ERAV 109
Query: 183 NEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCK 242
+ +AL E+ V+ A L I D+ AV
Sbjct: 110 EPLIKALKDEDWFVRIAAAFALGEIG--DERAV--------------------------- 140
Query: 243 LIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVL 302
+ L L+ + V AA A+ + R +
Sbjct: 141 --------------------EPLIKALKDEDGWVRQSAADALGEIGGERVRA------AM 174
Query: 303 QLFCSSPKPVLRFAAVRTLNK 323
+ + R AV L
Sbjct: 175 EKLAETGTGFARKVAVNYLET 195
Score = 38.8 bits (91), Expect = 0.001
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 42/201 (20%)
Query: 127 AAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ 186
TD ++ + ++ D + V AA ++ + V +
Sbjct: 2 RGSHHHHHHTDPEKVEMYIKNLQ----DDSYYVRRAAAYALGKI--GDERAV----EPLI 51
Query: 187 EALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKL--- 243
+AL E+ V+ A L I D+ AV L+ L K +R +
Sbjct: 52 KALKDEDAWVRRAAADALGQIG--DERAVEPLIKAL-----KDEDG---WVRQSAAVALG 101
Query: 244 -IEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVL 302
I D+ A + L L+ + V AA A+ + AV L
Sbjct: 102 QIGDERA------------VEPLIKALKDEDWFVRIAAAFALGEIGDER------AVEPL 143
Query: 303 QLFCSSPKPVLRFAAVRTLNK 323
+R +A L +
Sbjct: 144 IKALKDEDGWVRQSAADALGE 164
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 42.4 bits (100), Expect = 7e-05
Identities = 41/225 (18%), Positives = 75/225 (33%), Gaps = 33/225 (14%)
Query: 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRA 131
+ K Q +RR L I ++ + L K + ++ R AA A
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA---AYALGKIGDERAV--EPLIKALKDEDAWVRRAAADA 73
Query: 132 LCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNS 191
L I D ++ + + +K D + V +A V++ + +R V + +AL
Sbjct: 74 LGQIGDERAVEPLIKALK----DEDGWVRQSAAVALGQIGD------ERAVEPLIKALKD 123
Query: 192 ENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS 251
E+ V+ A L I D+ AV L+ L K +R Q+AA
Sbjct: 124 EDWFVRIAAAFALGEIG--DERAVEPLIKAL-----KDEDG---WVR--------QSAAD 165
Query: 252 GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELA 296
+ +E + A + + + +
Sbjct: 166 ALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHHH 210
Score = 36.2 bits (84), Expect = 0.008
Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 15/148 (10%)
Query: 65 LGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLY 124
LG A + K + +D +R+ L I ++ + L K + ++
Sbjct: 74 LGQIGDERAVEPLIKALKDEDGWVRQSA---AVALGQIGDERAV--EPLIKALKDEDWFV 128
Query: 125 RAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNE 184
R AA AL I D ++ + + +K D + V +A ++ + +
Sbjct: 129 RIAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEI--GGERVRAA---- 178
Query: 185 VQEALNSENVMVQYHALGLLYHIRKSDQ 212
+++ + + A+ L + +
Sbjct: 179 MEKLAETGTGFARKVAVNYLETHKSFNH 206
Score = 32.0 bits (73), Expect = 0.19
Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 69/201 (34%)
Query: 125 RAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSI--FHMTKHSPDLVKRWV 182
R AA AL I D ++ + +A+ D ++ V AA ++ + L+
Sbjct: 36 RRAAAYALGKIGDERAVEPLI----KALKDEDAWVRRAAADALGQIGDERAVEPLI---- 87
Query: 183 NEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCK 242
+AL E+ V+ A L I D+ AV
Sbjct: 88 ----KALKDEDGWVRQSAAVALGQIG--DERAV--------------------------- 114
Query: 243 LIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVL 302
+ L L+ + V AA A+ + AV L
Sbjct: 115 --------------------EPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEPL 148
Query: 303 QLFCSSPKPVLRFAAVRTLNK 323
+R +A L +
Sbjct: 149 IKALKDEDGWVRQSAADALGE 169
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 263 DYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321
+ L+ S V AA+A+ + AV L +R AA L
Sbjct: 22 EMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADAL 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 79/249 (31%)
Query: 44 NPKKCTHILTKILYLINQGEQLG-------TQEATDAFFAMTKLFQSKDVILRRMVYLGI 96
NP T I + +G+++ + D K+F+ + +
Sbjct: 1668 NPVNLT-----IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 97 KELSNI------AEDVIIVTS-SLTKDM--TGKEDLYRAAA------IRALCSITDT-TM 140
K L + A + + + +D+ G A AL S+ D ++
Sbjct: 1723 KGLLSATQFTQPA---LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 141 IQAIE------RYMKQAIVDRNS---------AVSSAAVVSIFHMTKHSPDLVKRWVNEV 185
+E M+ A V R+ A++ V + F S + ++ V V
Sbjct: 1780 ESLVEVVFYRGMTMQVA-VPRDELGRSNYGMIAINPGRVAASF-----SQEALQYVVERV 1833
Query: 186 QEA---------LNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCML 236
+ N EN QY A G +R A+ + L ++
Sbjct: 1834 GKRTGWLVEIVNYNVEN--QQYVAAG---DLR-----ALDTVTNVLNFIKLQK------- 1876
Query: 237 IRIVCKLIE 245
I I+ +L +
Sbjct: 1877 IDII-ELQK 1884
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 40.0 bits (93), Expect = 0.001
Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 30/221 (13%)
Query: 126 AAAIRALCSITDTTMIQ------AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVK 179
R + S I + R ++ ++ + A ++ ++ + K
Sbjct: 108 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167
Query: 180 RWVNE-----VQEALNSENVMVQYHALGLLYHI-RKSDQL--------AVTKLVAKLTKF 225
V+ + L + +V V+ A+ L ++ S A+ ++
Sbjct: 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN 227
Query: 226 TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285
+ +C+ + Q S S L + + +A AI
Sbjct: 228 KPSLIRTATWTLSNLCRGKKPQPDWSVV-----SQALPTLAKLIYSMDTETLVDACWAIS 282
Query: 286 NL-----RRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321
L A L S +++ A+R +
Sbjct: 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 34.1 bits (78), Expect = 0.056
Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 38/226 (16%)
Query: 126 AAAIRALCSITDTTMIQ-------AIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV 178
R L S I + R+++ N + + + ++ +
Sbjct: 41 TQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100
Query: 179 KRWVNE-----VQEALNSENVMVQYHALGLLYHI-RKSDQL--------AVTKLVAKLTK 224
+ + E L+SE VQ A+ L +I S + L+ +K
Sbjct: 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160
Query: 225 FTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSN----SPLFDYLETCLRHKSETVVYEA 280
+ + R + N G + SP + L L V+ +A
Sbjct: 161 QNRLT------MTRNAVWAL--SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADA 212
Query: 281 AHAIVNL--RRTSAREL---APAVSVLQLFCSSPKPVLRFAAVRTL 321
A+ L + A L + A+R +
Sbjct: 213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 34.2 bits (78), Expect = 0.061
Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 32/235 (13%)
Query: 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK 172
L+ D + + ++A+ ++Q + + A +++ ++T
Sbjct: 175 LSFDEEHRHAMNELGGLQAI-----AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229
Query: 173 HSPDLVKRWVNEVQEA-------LNSENVMVQYHALGLLYHI------RKSDQLAVTKLV 219
K + ++ L SE+ +Q +L ++ L V
Sbjct: 230 GDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288
Query: 220 AKLTKFTMKSP-----YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSE 274
L + ++ + + + + A + + + L L + +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348
Query: 275 TVVYEAAHAIVNLRRTSAREL--------APAVSVLQLFCSSPKPVLRFAAVRTL 321
++ + N+ A + L S + A TL
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 32.6 bits (75), Expect = 0.13
Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 32/197 (16%)
Query: 148 MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEA---------LNSENVMVQY 198
M Q + + +A + + ++ V +A L+S N +
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQ----AVIDAGALPALVQLLSSPNEQILQ 72
Query: 199 HALGLLYHI-RKSDQL--------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNA 249
AL L +I ++ A+ LV L+ + + + +Q
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 250 ASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL-----APAVSVLQL 304
A D L L +E ++ EA A+ N+ ++ A A+ L
Sbjct: 133 AVIDAG-----ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 305 FCSSPKPVLRFAAVRTL 321
SSP + A+ L
Sbjct: 188 LLSSPNEQILQEALWAL 204
Score = 27.3 bits (61), Expect = 7.4
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 64/182 (35%)
Query: 125 RAAAIRALCSITDTTMIQAIERYMKQAIVD-------------RNSAVSSAAVVSIFHMT 171
A+ AL +I + QA++D N + A+ ++ ++
Sbjct: 113 LQEALWALSNIA------SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 172 KHSPDLVKRWVNE--VQ---EALNSENVMVQYHALGLLYHI-RKSDQLAVTKLVAKLTKF 225
+ ++ ++ + + L+S N + AL L +I ++
Sbjct: 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ---------- 216
Query: 226 TMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285
+++ A + LE H++E + EA A+
Sbjct: 217 -----------------AVKEAGA------------LEKLEQLQSHENEKIQKEAQEALE 247
Query: 286 NL 287
L
Sbjct: 248 KL 249
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 32.5 bits (74), Expect = 0.17
Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%)
Query: 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK 172
L+ D + + ++A+ ++Q + + A +++ ++T
Sbjct: 59 LSFDEEHRHAMNELGGLQAI-----AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 113
Query: 173 HSPDLVKRWVNE------VQEALNSENVMVQYHALGLLYHI------RKSDQLAVTKLVA 220
+ + L SE+ +Q +L ++ L V
Sbjct: 114 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 173
Query: 221 KLTKFTMKSP-----YATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSET 275
L + ++ + + + + A + + + L L + +
Sbjct: 174 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233
Query: 276 VVYEAAHAIVNLRRTSAREL--------APAVSVLQLFCSSPKPVLRFAAVRTL 321
++ + N+ A + L S + A TL
Sbjct: 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 32.1 bits (72), Expect = 0.18
Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 9/176 (5%)
Query: 24 QNLDKTAVLQEARTFNDTPVNPKKCTHILTKIL-YLINQGEQLGTQEATDAF-FAMTKLF 81
N D R F P K + I+ + + + +E + + + K
Sbjct: 83 SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG 142
Query: 82 QSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMI 141
++KD + R V + LS++ + +T L + K R+ + + I
Sbjct: 143 EAKDNM-RTSVRDIVNVLSDVV-GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200
Query: 142 QAIERY-----MKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSE 192
++ + + D++ V +AA+ + K D + + + + S
Sbjct: 201 SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSL 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 32.5 bits (73), Expect = 0.20
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 117 MTGKEDLYRAAAIRAL-CSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSP 175
+ E L R + + T A++R + A+ D N V AAV+++ +
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610
Query: 176 DLVKRWVNEVQEALNSENVMVQYHALGLLY 205
V R V + ++ N+ ALG+
Sbjct: 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 32.3 bits (73), Expect = 0.21
Identities = 42/254 (16%), Positives = 89/254 (35%), Gaps = 32/254 (12%)
Query: 96 IKELSNIAEDVIIVT---SSLTKDMT-GKEDLYRAAA--IRALCSITDTTMIQAIERYMK 149
+ L N +D + T LTK + + + AA + L + M
Sbjct: 135 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194
Query: 150 QAIV-----DRNSAVSSAAVVSIFHMTKHSPDLVKRW----VNEVQEALNSENVMVQYHA 200
AIV + + ++ +++ H L+ + + + L S V +HA
Sbjct: 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254
Query: 201 LGLLYHIRKSDQL---------AVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAAS 251
+ L+++ + + K+VA L K +K T ++I+ ++
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314
Query: 252 GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSAREL----APAVSVLQLFCS 307
+ L + + T + E +++ + + L S+ + A + L L +
Sbjct: 315 LASGGP-QALVNIMRT---YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370
Query: 308 SPKPVLRFAAVRTL 321
P L + TL
Sbjct: 371 DPSQRLVQNCLWTL 384
Score = 27.7 bits (61), Expect = 7.3
Identities = 24/212 (11%), Positives = 52/212 (24%), Gaps = 33/212 (15%)
Query: 126 AAAIRALCSITDTTMIQAIERYMKQAI-------VDRNSAVSSAAVVSIFHMTKHSPDLV 178
A+R L S + + + + A V + P
Sbjct: 464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 179 KRWVNE-----VQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYAT 233
+ + + L + Q + + + + ++V A
Sbjct: 524 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE-----------AC 572
Query: 234 CMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL--RRTS 291
+ I+ + I ++ L E + AA + L + +
Sbjct: 573 TGALHILARDIHNRIVIR------GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 626
Query: 292 AREL--APAVSVLQLFCSSPKPVLRFAAVRTL 321
A + A + L S + A L
Sbjct: 627 AEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 29.6 bits (67), Expect = 0.62
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 72 DAFFAMTKLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRA 131
+AF + + ++D +R + N ++ + L K + R+ A R+
Sbjct: 42 EAFEPLLESLSNEDWRIRGAA---AWIIGNFQDERAV--EPLIKLLEDDSGFVRSGAARS 96
Query: 132 LCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSI 167
L I + A+E+ + AV +
Sbjct: 97 LEQIGGERVRAAMEKLAE----TGTGFARKVAVNYL 128
Score = 29.6 bits (67), Expect = 0.69
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 262 FDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321
F+ L L ++ + AA I N + AV L +R A R+L
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSL 97
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 30.3 bits (68), Expect = 1.1
Identities = 25/222 (11%), Positives = 52/222 (23%), Gaps = 35/222 (15%)
Query: 126 AAAIRALCSITDTTMIQAIERYMKQAIVD----RNSAVSSAAVVSIFHMTKHSPDLVKRW 181
+ L + + Q +V N + + + + + K
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLI 177
Query: 182 VNE-------VQEALNSENVMVQYHALGLLYHIRKSDQL--------AVTKLVAKLTKFT 226
+ V + + +L + + L LT +
Sbjct: 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 227 MKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN 286
+ +R + Q G L L L VV AA + N
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGMEG--------LLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 287 LRRTSARELAPAVS-------VLQLFCSSPKPVLRFAAVRTL 321
L + + V + + + + A+ L
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
Score = 27.2 bits (60), Expect = 9.0
Identities = 33/218 (15%), Positives = 76/218 (34%), Gaps = 26/218 (11%)
Query: 126 AAAIRALCSITDTTMIQAIERYMKQAIVD-----RNSAVSSAAVVSIFHMTKHSPDLVKR 180
A + L + M AIV + + ++ +++ H L+
Sbjct: 35 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94
Query: 181 W----VNEVQEALNSENVMVQYHALGLLYHIRKSDQL---------AVTKLVAKLTKFTM 227
+ + + + L S V ++A+ L+++ + + K+VA L K +
Sbjct: 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 154
Query: 228 KSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL 287
K T ++I+ ++ + L + + T + E +++ + + L
Sbjct: 155 KFLAITTDCLQILAYGNQESKLIILASGGP-QALVNIMRT---YTYEKLLWTTSRVLKVL 210
Query: 288 RRTSAREL----APAVSVLQLFCSSPKPVLRFAAVRTL 321
S+ + A + L L + P L + TL
Sbjct: 211 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 265 LETCLRHKSETVVYEAAHAIVNLRRTSA--REL---APAVSVLQLFCSSPKPVLRFAAVR 319
+ L + + A + + + A A+ L SSP + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 320 TL 321
L
Sbjct: 77 AL 78
Score = 28.0 bits (63), Expect = 3.7
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 14/108 (12%)
Query: 189 LNSENVMVQYHALGLLYHI-RKSDQL--------AVTKLVAKLTKFTMKSPYATCMLIRI 239
L+S N + AL L +I ++ A+ LV L+ + +
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 240 VCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNL 287
+ +Q A D L L +E ++ EA A+ N+
Sbjct: 123 IASGGNEQIQAVIDAG-----ALPALVQLLSSPNEQILQEALWALSNI 165
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 262 FDYLETCLRHKSETVVYEAAHAIVNL 287
+ LE H++E + EA A+ L
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKL 207
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 29.4 bits (66), Expect = 1.6
Identities = 33/253 (13%), Positives = 71/253 (28%), Gaps = 57/253 (22%)
Query: 126 AAAIRALCSITDTTMIQAIERYMKQAIVD-----RNSAVSSAAVVSIFHMTKHSPDLVKR 180
A + L + M AIV + + ++ +++ H L+
Sbjct: 38 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97
Query: 181 W----VNEVQEALNSENVMVQYHALGLLYHIRKSDQL---------AVTKLVAKLTKFTM 227
+ + + + L S V ++A+ L+++ + + K+VA L K +
Sbjct: 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157
Query: 228 KSPYATCMLIRIVCKLIEDQ----------------------------------NAASGD 253
K T ++I+ ++ +
Sbjct: 158 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 217
Query: 254 TNWS---NSPLFDYLETCLRHKSETVVYEAAHAIVNL--RRTSARELAPAVSVLQLFCSS 308
+N + L L S+ +V + NL T + + L S
Sbjct: 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 277
Query: 309 PKPVLRFAAVRTL 321
+ A L
Sbjct: 278 DDINVVTCAAGIL 290
Score = 27.4 bits (61), Expect = 7.0
Identities = 24/222 (10%), Positives = 53/222 (23%), Gaps = 35/222 (15%)
Query: 126 AAAIRALCSITDTTMIQAIERYMKQAIVD----RNSAVSSAAVVSIFHMTKHSPDLVKRW 181
+ L + + Q +V N + + + + + K
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES-KLI 180
Query: 182 VNEVQ------EALNSENVM-VQYHALGLLYHIRKSDQL--------AVTKLVAKLTKFT 226
+ + + + + +L + + L LT +
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 227 MKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVN 286
+ +R + Q G L L L VV AA + N
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGMEG--------LLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 287 L-----RRTSARELAPAVSVL--QLFCSSPKPVLRFAAVRTL 321
L + + L + + + + A+ L
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 29.1 bits (66), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 276 VVYEAA-HAIVNLRRTSARELAPAVSV 301
+Y A HA+V L R A ELAP V V
Sbjct: 153 PLYTATKHAVVGLVRQMAFELAPHVRV 179
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 28.7 bits (65), Expect = 2.1
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y A + + A +LAP
Sbjct: 178 YSYAKQLVDSYTLQLAAQLAP 198
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 28.3 bits (64), Expect = 2.2
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 97 KELSNIAEDVIIVTSSLTKDMTGKEDLYRA 126
K S E II TSS+T G +L
Sbjct: 160 KVFSKYGEYTIIPTSSVTG--EGISELLDL 187
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 29.1 bits (65), Expect = 2.2
Identities = 18/183 (9%), Positives = 54/183 (29%), Gaps = 12/183 (6%)
Query: 23 FQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ 82
F +L+K L+ F + + L + Y G + + +
Sbjct: 167 FDSLEKELSLKGKADFGG--SSDGTAFNFLARAFY----GTNPADTKLKADAPGLITKWV 220
Query: 83 SKDVILRRMVYLGI-KELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT--- 138
+ L ++ +G+ + + + +L K + + + + D
Sbjct: 221 LFN--LHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLGI 278
Query: 139 TMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQY 198
+ +A + + + + + + + R E++ + S +
Sbjct: 279 SREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTM 338
Query: 199 HAL 201
A+
Sbjct: 339 GAI 341
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics
initiative, structural genomics; 1.20A {Pyrococcus
horikoshii} PDB: 2d3k_A
Length = 121
Score = 27.9 bits (62), Expect = 2.4
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 140 MIQAIERYMKQAIVDRN----------SAVSSAAVVSIFHMTKHSPDLVKRWVNE 184
MI+ + KQ IV R + V+ AV + F K + + W E
Sbjct: 1 MIKMFK--YKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFRE 53
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 28.7 bits (65), Expect = 2.7
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y AA H +V L R EL
Sbjct: 178 YVAAKHGVVGLMRAFGVELGQ 198
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 28.3 bits (64), Expect = 3.1
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y A+ H + L T A EL
Sbjct: 178 YSASKHGLTALTNTLAIELGE 198
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 28.3 bits (64), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y A+ H + L RT A EL P
Sbjct: 191 YIASKHGLHGLMRTMALELGP 211
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics,
NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Length = 115
Score = 27.1 bits (60), Expect = 3.3
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 148 MKQAIVDRN----------SAVSSAAVVSIFHMTKHSPDLVKRWVNE 184
MK +V RN + A + + + +P V W+ E
Sbjct: 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLRE 47
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 28.3 bits (64), Expect = 3.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y A+ HA+ L R A EL
Sbjct: 174 YTASKHAVTGLARAFAAELGK 194
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y AA H +V L R A LA
Sbjct: 175 YVAAKHGVVGLMRVYANLLAG 195
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 27.5 bits (62), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 97 KELSNIAEDVIIVTSSLTKDMTGKEDLYRA 126
+ L+ ED +I+ SS TK GK++ + A
Sbjct: 161 QTLNIDPEDELILFSSETK--KGKDEAWGA 188
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 27.9 bits (61), Expect = 6.4
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 177 LVKRWVNEVQEALNSENVMVQYHALGLL----------YHIRKSDQLAVTKLVAKLTKFT 226
L ++ V+ ++ +S+N ++ AL L IR A KL +F
Sbjct: 327 LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL 386
Query: 227 MKSPYATCMLIRIVCKLIE-DQNAASGDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIV 285
+K + L +A + + L R +++ +Y V
Sbjct: 387 IKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446
Query: 286 NL 287
NL
Sbjct: 447 NL 448
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 27.1 bits (61), Expect = 7.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 276 VVYEAA-HAIVNLRRTSARELAP 297
Y A +V++ + A ELAP
Sbjct: 158 AWYNATKGWVVSVTKALAIELAP 180
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 26.8 bits (60), Expect = 7.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 132 LCSITDTTMIQAIERYMKQAI 152
L D ++ + RY+++ I
Sbjct: 133 LVEAHDHLLLGKVGRYIEEPI 153
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 27.1 bits (61), Expect = 7.8
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y + AI+ L T+A +LAP
Sbjct: 157 YGTSKGAIIALTETAALDLAP 177
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 27.1 bits (61), Expect = 7.8
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y AA H +V L R SA E
Sbjct: 165 YAAAKHGVVGLTRNSAVEYGR 185
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 27.1 bits (61), Expect = 8.0
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 276 VVYEAA-HAIVNLRRTSARELAP 297
Y+ A A++ + +T A EL
Sbjct: 158 GAYKMAKSALLAMSQTLATELGE 180
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 26.8 bits (60), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 276 VVYEAA-HAIVNLRRTSARELAPAVSV 301
+ Y A + +L + A AP V V
Sbjct: 168 IAYCATKAGLESLTLSFAARFAPLVKV 194
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 26.7 bits (60), Expect = 9.6
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 278 YEAA-HAIVNLRRTSARELAP 297
Y + I+ L R +A EL
Sbjct: 175 YGMSKAGIIQLSRITAAELRS 195
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM
barrel), structural genomics, PSI-2, structure
initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens
str}
Length = 344
Score = 26.9 bits (60), Expect = 9.6
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 115 KDMTGKEDLYRAAAIRALC 133
K+ G D+ AA
Sbjct: 185 KEFGGPADMRYAAENITSR 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.369
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,701,795
Number of extensions: 274573
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 111
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)