RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18014
(323 letters)
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 141 bits (355), Expect = 2e-38
Identities = 49/316 (15%), Positives = 120/316 (37%), Gaps = 29/316 (9%)
Query: 23 FQNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQ 82
F K + + N+ +K + K++ + G+ + + F + Q
Sbjct: 4 FTTNKKGEIFELKAELNNEKKEKRK--EAVKKVIAAMTVGK-----DVSSLFPDVVNCMQ 56
Query: 83 SKDVILRRMVYLGIKELSNIAEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMI 141
+ ++ L+++VYL + + D+ I +S KD L RA A+R + I +
Sbjct: 57 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT 116
Query: 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLV--KRWVNEVQEALNSENVMVQYH 199
+ + +++ + D + V A V + + + +V + +++ +++ + N MV +
Sbjct: 117 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVAN 176
Query: 200 ALGLLYHIRKSD------QLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGD 253
A+ L I +S L + LT + + ++ +
Sbjct: 177 AVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-------K 229
Query: 254 TNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQ------LFCS 307
+ + + + L H + VV A ++ ++ +L+ +
Sbjct: 230 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 289
Query: 308 SPKPVLRFAAVRTLNK 323
S +P +++ A+R +N
Sbjct: 290 SGEPEVQYVALRNINL 305
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 134 bits (337), Expect = 7e-36
Identities = 52/316 (16%), Positives = 117/316 (37%), Gaps = 37/316 (11%)
Query: 39 NDTPVNPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKE 98
D ++ + K+L++ G + L S +++ YL I
Sbjct: 38 GDKALDGYSKKKYVCKLLFIFLLGH-----DIDFGHMEAVNLLSSNRYTEKQIGYLFISV 92
Query: 99 LSNIAEDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQ--AIVDR 155
L N ++I + +++ D+ + + A+ + ++ M +A + + D
Sbjct: 93 LVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT 152
Query: 156 NSAVSSAAVVSIFHMTKHSPDLVK--RWVNEVQEALNSENVMVQYHALGLLYHI------ 207
+V +A + + + + SPDLV W + V LN +++ V A L+ +
Sbjct: 153 MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 212
Query: 208 --RKSDQLAVTKLVAKLTK----------FTMKSPYATCMLIRIVCKLIEDQNAAS---- 251
+ S LAV++L +T + + +P+ + L+R++ ++ A
Sbjct: 213 EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL 272
Query: 252 ----GDTNWSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQLFCS 307
+ + V++EA I++ + L A + L F
Sbjct: 273 TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH-DSEPNLLVRACNQLGQFLQ 331
Query: 308 SPKPVLRFAAVRTLNK 323
+ LR+ A+ ++
Sbjct: 332 HRETNLRYLALESMCT 347
Score = 36.3 bits (83), Expect = 0.004
Identities = 34/263 (12%), Positives = 81/263 (30%), Gaps = 20/263 (7%)
Query: 44 NPKKCTHILTKILYLINQGEQLGTQEATDAFFAMTKLFQSKDVILRRMVYLGIKELSNIA 103
+ T + I L + + + A ++++ S L+ Y +
Sbjct: 192 HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP---- 247
Query: 104 EDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAA 163
+ + L ++ R L +I + + K + +AV A
Sbjct: 248 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSK--KVQHSNAKNAVLFEA 305
Query: 164 VVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHI--RKSDQLAVTKLVAK 221
+ I H P+L+ R N++ + L ++Y AL + + + AV +
Sbjct: 306 ISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIET 364
Query: 222 LTKFTMKSPYATCML--IRIVCKLIEDQNAASGDTNWSNSPLFDYLETCLRHKSETVVYE 279
+ + + ++ + + NA + + + L ++ E
Sbjct: 365 VINALKTERDVSVRQRAVDLLYAMCDRSNA---------QQIVAEMLSYLETADYSIREE 415
Query: 280 AAHAIVNLRRTSARELAPAVSVL 302
+ L A + V +
Sbjct: 416 IVLKVAILAEKYAVDYTWYVDTI 438
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 39.1 bits (89), Expect = 4e-04
Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 4/148 (2%)
Query: 113 LTKDMTGKEDLYRAAAIRALCSITDTTMIQAIERYMKQAIVDRNSAVSSAAVVSIFHMTK 172
L + + L R ++ R L ++ + D+N + +
Sbjct: 24 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKI 79
Query: 173 HSPDLVKRWVNEVQEALNSENVMVQYHALGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYA 232
+ ALN ++ V+ A+ K + + K+V +
Sbjct: 80 CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTN 139
Query: 233 TCMLIRIVCKLIEDQNAASGDTNWSNSP 260
+I D+ N P
Sbjct: 140 VRRATAFAISVINDKATIPLLINLLKDP 167
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 31.8 bits (72), Expect = 0.042
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 142 QAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHAL 201
Q + + + +A + + + H + N + E + N +V Y +L
Sbjct: 1 QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSL 60
Query: 202 GLLYH-IRKSDQLAVTKLVAKLTKFTMKS 229
+H + ++ + L + + F + S
Sbjct: 61 ITTHHLMAYGNERFMQYLASSNSTFNLSS 89
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 32.8 bits (73), Expect = 0.060
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 79 KLFQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDT 138
K + + R +V + +L+ I + ++ L + R++ + A+ +
Sbjct: 935 KHCECAEEGTRNVVAECLGKLTLIDPETLL--PRLKGYLISGSSYARSSVVTAVKFTI-S 991
Query: 139 TMIQAIERYMKQAIV-------DRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNS 191
Q I+ +K I D + V A+V+ + P L++ ++ V L +
Sbjct: 992 DHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYN 1051
Query: 192 E 192
E
Sbjct: 1052 E 1052
Score = 32.4 bits (72), Expect = 0.083
Identities = 31/251 (12%), Positives = 68/251 (27%), Gaps = 24/251 (9%)
Query: 81 FQSKDVILRRMVYLGIKELSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTM 140
+ S + + KE + I T L ++ + D +
Sbjct: 793 YYSIAKCVAALTRACPKEGPAVVGQFIQ--DVKNSRSTDSIRLLALLSLGEVGHHIDLSG 850
Query: 141 IQAIERYMKQAIVDRNSAVSSAAVVSIFHMTKHSPDLVKRWVNEVQEALNSENVMVQYHA 200
++ + +A + V SAA ++ ++ + + V + + S+
Sbjct: 851 QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEY---LPFVLQEITSQPKRQYLLL 907
Query: 201 LGLLYHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGD-----TN 255
L I + + + V + +L++ E + T
Sbjct: 908 HSLKEIISSASVVGLKPYVENIWA----------LLLKHCECAEEGTRNVVAECLGKLTL 957
Query: 256 WSNSPLFDYLETCLRHKSETVVYEAAHAIVNLRRTSARELAPAVSVLQ----LFCSSPKP 311
L L+ L S A+ + + P + P
Sbjct: 958 IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1017
Query: 312 VLRFAAVRTLN 322
+R A+ T N
Sbjct: 1018 NVRRVALVTFN 1028
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 29.4 bits (64), Expect = 0.68
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 2/121 (1%)
Query: 205 YHIRKSDQLAVTKLVAKLTKFTMKSPYATCMLIRIVCKLIEDQNAASGDTNWSNSPLFDY 264
Y + QL V KL M IR + W+++ +
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484
Query: 265 LETCLRHKSETVVYEAAHAIVNLRRTSARELAP--AVSVLQLFCSSPKPVLRFAAVRTLN 322
+ + I L +++ + + P +RF ++L
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 323 K 323
K
Sbjct: 545 K 545
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney
murine leukemia virus, MoMLV [TaxId: 11801]}
Length = 255
Score = 26.8 bits (58), Expect = 3.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 24 QNLDKTAVLQEARTFNDTPVNPKKCTHILTKILYL---INQGE 63
Q +LQ + KK ++ YL + +G+
Sbjct: 215 QGTRA--LLQTLGNLGYR-ASAKKAQICQKQVKYLGYLLKEGQ 254
>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.5 bits (56), Expect = 4.4
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 148 MKQAIVDRN----------SAVSSAAVVSIFHMTKHSPDLVKRWVNEVQ 186
K +V RN + S AAV + + + +P+++K+W Q
Sbjct: 3 YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQ 51
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179
{Rhodococcus sp. [TaxId: 1831]}
Length = 69
Score = 24.3 bits (53), Expect = 5.9
Identities = 5/48 (10%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 99 LSNIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDTTMIQAIER 146
+ +A+ + ++ + K++++ A + + + +ER
Sbjct: 24 VREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLA--RLSEVER 69
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 25.9 bits (55), Expect = 7.7
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 268 CLRHKSETVVYEAAHAIVNL------RRTSARELAPAVSVLQLFCSSPKPVLRFAAVRTL 321
L + E A+ I + + +L + L SP ++ AA L
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSPNQNVQQAAAGAL 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.131 0.369
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,104,215
Number of extensions: 47846
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 23
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)