BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18015
         (708 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/458 (21%), Positives = 184/458 (40%), Gaps = 88/458 (19%)

Query: 254 IQRRGPDSFKQLTISEDCATCTFLASVRWT-QGVTISPQPLEDVDG-NVLLWNGDVYN-- 309
           ++ RGPD +  +  S++      LA  R +   V    QPL +    +VL  NG++YN  
Sbjct: 27  MRHRGPD-WSGIYASDNA----ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQ 81

Query: 310 -FTSEDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPI 368
              +E     +  + SD   +L  +   G  + L  +QG ++F   D +      G+D +
Sbjct: 82  ALRAEYGDRYQFQTGSDCEVILALYQEKGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHL 140

Query: 369 GRHSLLLKCTPTSILVTSVAHKSI----PRIEEIP-NTHIYSVDITCPDFQLGNYHPKEP 423
           G   L +       L  +   K++      I+E P  ++++S D     +    YH    
Sbjct: 141 GIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQDGEIRSY----YHR--- 193

Query: 424 STDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVRTQ 483
                      D+F                    Y    DNV +  +L  Q++E  V+  
Sbjct: 194 -----------DWF-------------------DYDAVKDNVTDKNEL-RQALEDSVK-- 220

Query: 484 PSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSS-EPIDLLNVAFEKNQNYNVP 542
            SH +  V        GVL SGG+DS++I+ +  ++     E  +     + +  ++ V 
Sbjct: 221 -SHLMSDV------PYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVG 273

Query: 543 DRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDT--VLDDSLGC 600
             L G   L+    +         EI+ + +E  D     I+DVIY ++T  V       
Sbjct: 274 --LPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDA----IRDVIYHIETYDVTTIRAST 327

Query: 601 AVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSNDWSALRA 660
            ++  +R +  +G            +++L G G+DE+ GGY     +  H + +   L  
Sbjct: 328 PMYLMSRKIKAMGI-----------KMVLSGEGSDEVFGGY-----LYFHKAPNAKELHE 371

Query: 661 QLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVV 698
           +   ++L +   +  R N+ +   G ++R PFLD+  +
Sbjct: 372 ETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFL 409


>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
           Plasmodium Falciparum
 pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
           Plasmodium Falciparum
          Length = 556

 Score = 33.9 bits (76), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 259 PDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGNVLLWN 304
           P++F  ++ SE+C  C+         GV   P+  E +DG ++ +N
Sbjct: 179 PENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYN 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,425,310
Number of Sequences: 62578
Number of extensions: 896630
Number of successful extensions: 1988
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1983
Number of HSP's gapped (non-prelim): 9
length of query: 708
length of database: 14,973,337
effective HSP length: 106
effective length of query: 602
effective length of database: 8,340,069
effective search space: 5020721538
effective search space used: 5020721538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)