Query psy18015
Match_columns 708
No_of_seqs 529 out of 2227
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:19:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03104 trio_amidotrans aspa 100.0 3.1E-78 6.7E-83 696.6 39.2 428 215-707 1-490 (589)
2 PRK09431 asnB asparagine synth 100.0 1.7E-76 3.7E-81 674.6 39.2 396 215-707 1-419 (554)
3 PTZ00077 asparagine synthetase 100.0 1E-75 2.2E-80 670.7 38.3 404 215-707 1-427 (586)
4 PLN02549 asparagine synthase ( 100.0 2.2E-74 4.7E-79 658.1 38.8 396 215-707 1-413 (578)
5 TIGR01536 asn_synth_AEB aspara 100.0 2.7E-74 5.9E-79 650.0 39.0 408 244-707 15-435 (467)
6 TIGR03108 eps_aminotran_1 exos 100.0 8.3E-72 1.8E-76 650.6 38.0 364 215-645 1-378 (628)
7 COG0367 AsnB Asparagine syntha 100.0 2.7E-70 5.7E-75 621.7 36.5 401 215-707 1-412 (542)
8 KOG0571|consensus 100.0 3.6E-68 7.8E-73 555.8 24.9 381 244-708 17-412 (543)
9 KOG0573|consensus 100.0 1.9E-59 4E-64 494.0 12.5 211 1-243 260-508 (520)
10 KOG0573|consensus 100.0 4.9E-56 1.1E-60 468.1 28.5 427 244-707 17-459 (520)
11 cd00712 AsnB Glutamine amidotr 100.0 1.6E-35 3.5E-40 302.3 19.4 200 242-454 14-220 (220)
12 cd01991 Asn_Synthase_B_C The C 100.0 1.7E-32 3.8E-37 287.6 17.2 199 469-707 1-234 (269)
13 PF00733 Asn_synthase: Asparag 100.0 1.1E-30 2.4E-35 270.3 16.1 203 467-708 1-227 (255)
14 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 6.7E-30 1.5E-34 252.7 18.7 140 244-390 18-166 (181)
15 cd01909 betaLS_CarA_N Glutamin 100.0 3.2E-29 7E-34 249.6 13.2 146 290-455 44-199 (199)
16 PRK09123 amidophosphoribosyltr 100.0 1.1E-27 2.4E-32 268.2 22.4 209 212-440 18-272 (479)
17 PRK08525 amidophosphoribosyltr 99.9 4.4E-27 9.4E-32 262.3 20.3 157 215-390 1-198 (445)
18 PRK06388 amidophosphoribosyltr 99.9 1.2E-26 2.6E-31 259.0 21.3 160 212-390 16-215 (474)
19 PRK07272 amidophosphoribosyltr 99.9 1.2E-26 2.5E-31 259.4 20.3 160 212-390 8-209 (484)
20 PRK07631 amidophosphoribosyltr 99.9 1.1E-26 2.5E-31 258.9 18.9 159 213-390 9-207 (475)
21 PRK07349 amidophosphoribosyltr 99.9 4.1E-26 8.9E-31 255.6 21.0 161 212-390 30-236 (500)
22 PRK08341 amidophosphoribosyltr 99.9 1E-25 2.3E-30 249.8 21.6 156 214-390 3-197 (442)
23 PRK07847 amidophosphoribosyltr 99.9 7.3E-26 1.6E-30 254.2 19.0 161 212-390 20-227 (510)
24 cd00714 GFAT Glutamine amidotr 99.9 5.1E-26 1.1E-30 231.4 16.2 143 244-390 13-196 (215)
25 PRK06781 amidophosphoribosyltr 99.9 1.5E-25 3.3E-30 250.3 20.4 159 213-390 9-207 (471)
26 cd00715 GPATase_N Glutamine am 99.9 1.2E-24 2.5E-29 226.8 18.5 144 244-390 13-198 (252)
27 PRK05793 amidophosphoribosyltr 99.9 1.4E-24 3.1E-29 243.4 18.1 180 212-408 11-234 (469)
28 PLN02440 amidophosphoribosyltr 99.9 3.4E-24 7.4E-29 240.9 18.2 157 215-390 1-198 (479)
29 PRK00331 glucosamine--fructose 99.9 3E-24 6.5E-29 250.2 16.9 174 215-408 1-218 (604)
30 PRK09246 amidophosphoribosyltr 99.9 3.5E-24 7.6E-29 242.3 16.4 177 215-409 1-234 (501)
31 cd01907 GlxB Glutamine amidotr 99.9 4.5E-24 9.8E-29 221.6 15.6 144 243-390 15-226 (249)
32 TIGR01135 glmS glucosamine--fr 99.9 4.5E-24 9.7E-29 248.8 15.8 162 244-409 13-218 (607)
33 PTZ00295 glucosamine-fructose- 99.9 1.2E-23 2.6E-28 246.0 16.4 156 215-390 24-227 (640)
34 COG0449 GlmS Glucosamine 6-pho 99.9 1.3E-23 2.8E-28 235.4 14.5 155 215-390 1-194 (597)
35 TIGR01134 purF amidophosphorib 99.9 5.5E-23 1.2E-27 229.4 18.2 162 243-407 13-219 (442)
36 PF13537 GATase_7: Glutamine a 99.9 1.7E-23 3.6E-28 195.0 7.8 109 280-390 3-122 (125)
37 cd00352 Gn_AT_II Glutamine ami 99.9 3.8E-22 8.2E-27 202.7 16.8 142 248-390 21-202 (220)
38 PTZ00394 glucosamine-fructose- 99.9 5.2E-22 1.1E-26 232.0 16.0 162 215-390 1-252 (670)
39 cd01910 Wali7 This domain is p 99.9 4.7E-22 1E-26 199.2 12.0 100 290-390 63-171 (224)
40 PF13522 GATase_6: Glutamine a 99.9 8E-22 1.7E-26 185.7 11.9 122 259-387 1-133 (133)
41 PLN02981 glucosamine:fructose- 99.9 1.4E-21 3.1E-26 229.1 14.5 182 215-410 1-272 (680)
42 COG0034 PurF Glutamine phospho 99.8 2.6E-19 5.6E-24 192.7 16.4 160 214-390 3-205 (470)
43 KOG0572|consensus 99.8 1.8E-17 4E-22 173.1 16.7 159 215-390 1-212 (474)
44 PRK09431 asnB asparagine synth 99.7 2E-17 4.4E-22 189.7 5.1 187 1-234 237-458 (554)
45 PTZ00077 asparagine synthetase 99.7 2.1E-17 4.6E-22 190.4 5.2 193 1-235 247-471 (586)
46 PLN02549 asparagine synthase ( 99.7 2.6E-17 5.7E-22 189.1 5.8 185 1-234 235-458 (578)
47 COG0367 AsnB Asparagine syntha 99.6 8.4E-16 1.8E-20 175.9 3.2 193 1-241 240-461 (542)
48 TIGR01536 asn_synth_AEB aspara 99.6 2.1E-15 4.6E-20 170.9 5.5 180 1-227 263-465 (467)
49 cd01991 Asn_Synthase_B_C The C 99.5 7.4E-15 1.6E-19 154.1 4.1 183 1-232 25-269 (269)
50 KOG1268|consensus 99.5 3.9E-14 8.4E-19 153.3 6.9 132 244-379 20-204 (670)
51 TIGR03442 conserved hypothetic 99.4 6.3E-12 1.4E-16 130.8 13.4 107 275-388 84-223 (251)
52 cd01908 YafJ Glutamine amidotr 99.3 2.1E-11 4.5E-16 127.7 14.3 100 275-379 82-209 (257)
53 TIGR03104 trio_amidotrans aspa 99.2 4.6E-12 1E-16 147.3 4.6 59 168-227 457-519 (589)
54 cd00713 GltS Glutamine amidotr 99.2 8.4E-11 1.8E-15 128.9 13.8 108 275-390 203-370 (413)
55 KOG0571|consensus 99.1 2.1E-11 4.5E-16 129.9 4.2 170 1-215 235-433 (543)
56 PF00733 Asn_synthase: Asparag 99.1 3.8E-12 8.3E-17 131.6 -1.4 177 1-226 27-255 (255)
57 cd01996 Alpha_ANH_like_III Thi 99.1 2.3E-10 4.9E-15 110.2 10.3 121 498-646 3-124 (154)
58 TIGR03573 WbuX N-acetyl sugar 99.1 3.3E-10 7.2E-15 123.4 11.0 119 498-643 61-179 (343)
59 PF00310 GATase_2: Glutamine a 99.1 6E-10 1.3E-14 121.4 11.7 106 275-388 197-361 (361)
60 PF12481 DUF3700: Aluminium in 98.9 3.2E-09 6.8E-14 105.2 8.7 93 297-390 75-175 (228)
61 TIGR03108 eps_aminotran_1 exos 98.9 9.2E-10 2E-14 129.5 5.1 60 168-228 496-560 (628)
62 PRK00876 nadE NAD synthetase; 98.6 1.9E-07 4.1E-12 100.4 10.3 88 460-572 11-98 (326)
63 cd00553 NAD_synthase NAD+ synt 98.4 1.6E-06 3.5E-11 90.4 12.2 84 462-571 4-87 (248)
64 TIGR00552 nadE NAD+ synthetase 98.4 1.6E-06 3.4E-11 90.6 11.2 85 462-572 3-87 (250)
65 PRK14561 hypothetical protein; 98.3 2.8E-06 6.1E-11 85.3 10.7 106 498-637 2-107 (194)
66 TIGR00268 conserved hypothetic 98.3 1.5E-06 3.3E-11 90.8 8.6 114 498-645 14-128 (252)
67 PRK13980 NAD synthetase; Provi 98.3 4.3E-06 9.4E-11 88.1 10.3 87 460-572 9-95 (265)
68 cd01990 Alpha_ANH_like_I This 98.2 5.8E-06 1.2E-10 83.3 9.6 115 499-645 1-116 (202)
69 COG1606 ATP-utilizing enzymes 98.2 1.7E-05 3.7E-10 80.9 12.0 160 498-693 19-182 (269)
70 PRK11750 gltB glutamate syntha 98.1 1.8E-05 4E-10 97.7 11.4 109 275-390 214-380 (1485)
71 cd01993 Alpha_ANH_like_II This 98.0 2.2E-05 4.8E-10 77.5 9.0 117 498-639 1-121 (185)
72 PF13230 GATase_4: Glutamine a 98.0 4.8E-05 1E-09 80.4 10.9 97 275-378 73-195 (271)
73 PF06508 QueC: Queuosine biosy 97.9 4.7E-05 1E-09 77.4 10.0 61 499-571 2-62 (209)
74 PF09147 DUF1933: Domain of un 97.9 1.2E-05 2.6E-10 77.1 4.9 143 290-445 41-189 (201)
75 PRK11106 queuosine biosynthesi 97.8 7.5E-05 1.6E-09 76.9 9.9 61 498-571 3-64 (231)
76 PRK00143 mnmA tRNA-specific 2- 97.8 0.00012 2.5E-09 80.2 11.6 118 498-638 2-130 (346)
77 cd01998 tRNA_Me_trans tRNA met 97.7 0.0003 6.6E-09 77.1 12.2 118 498-638 1-127 (349)
78 PRK04527 argininosuccinate syn 97.7 0.00035 7.6E-09 77.1 12.0 75 497-583 3-77 (400)
79 PRK14665 mnmA tRNA-specific 2- 97.7 0.00024 5.2E-09 78.0 10.5 65 496-571 5-69 (360)
80 PTZ00323 NAD+ synthase; Provis 97.6 0.00093 2E-08 71.3 14.2 124 498-643 48-181 (294)
81 COG0603 Predicted PP-loop supe 97.5 0.00013 2.8E-09 73.9 6.0 62 498-572 4-65 (222)
82 TIGR00364 exsB protein. This p 97.4 0.00029 6.2E-09 71.1 6.3 59 500-571 2-60 (201)
83 PRK00509 argininosuccinate syn 97.4 0.00094 2E-08 74.0 10.5 52 498-556 4-55 (399)
84 cd01999 Argininosuccinate_Synt 97.4 0.0011 2.3E-08 73.4 10.8 61 499-571 1-61 (385)
85 PF02540 NAD_synthase: NAD syn 97.3 0.00084 1.8E-08 69.8 9.4 64 498-572 20-83 (242)
86 PRK13820 argininosuccinate syn 97.3 0.0017 3.6E-08 71.9 11.5 62 497-571 3-65 (394)
87 cd01712 ThiI ThiI is required 97.3 0.0016 3.5E-08 64.2 10.4 34 499-535 2-35 (177)
88 COG2117 Predicted subunit of t 97.3 0.001 2.3E-08 63.3 8.2 77 498-590 2-78 (198)
89 COG0482 TrmU Predicted tRNA(5- 97.2 0.0023 5E-08 69.2 11.4 66 497-572 4-73 (356)
90 PLN00200 argininosuccinate syn 97.2 0.0013 2.8E-08 73.0 9.7 54 497-556 6-59 (404)
91 PRK13981 NAD synthetase; Provi 97.2 0.00081 1.8E-08 78.1 8.2 64 498-572 282-345 (540)
92 TIGR02432 lysidine_TilS_N tRNA 97.1 0.00095 2.1E-08 66.4 6.7 67 498-572 1-68 (189)
93 PRK00919 GMP synthase subunit 97.1 0.0018 3.9E-08 69.5 9.1 62 498-572 23-84 (307)
94 TIGR00884 guaA_Cterm GMP synth 97.1 0.0018 4E-08 69.7 9.2 62 498-571 18-80 (311)
95 TIGR00420 trmU tRNA (5-methyla 97.1 0.0038 8.2E-08 68.5 11.7 65 498-572 2-73 (352)
96 PRK01565 thiamine biosynthesis 97.0 0.0025 5.5E-08 71.0 9.8 120 493-638 173-293 (394)
97 PRK08349 hypothetical protein; 97.0 0.0037 8.1E-08 62.9 10.2 50 498-556 2-51 (198)
98 PRK08384 thiamine biosynthesis 97.0 0.0039 8.5E-08 68.9 10.6 69 493-570 177-245 (381)
99 PRK10696 tRNA 2-thiocytidine b 97.0 0.0052 1.1E-07 64.5 11.0 84 465-571 9-96 (258)
100 PF03054 tRNA_Me_trans: tRNA m 97.0 0.0015 3.3E-08 71.4 6.9 65 498-572 2-72 (356)
101 COG0067 GltB Glutamate synthas 96.9 0.004 8.6E-08 67.8 9.7 110 275-390 204-343 (371)
102 PRK14664 tRNA-specific 2-thiou 96.9 0.0076 1.6E-07 66.2 11.7 60 497-572 6-65 (362)
103 PLN02347 GMP synthetase 96.9 0.0033 7.2E-08 72.5 9.3 64 497-572 230-294 (536)
104 TIGR00342 thiazole biosynthesi 96.9 0.0051 1.1E-07 68.1 10.5 119 493-637 169-288 (371)
105 TIGR00032 argG argininosuccina 96.9 0.004 8.6E-08 69.2 9.4 60 499-571 2-61 (394)
106 cd01986 Alpha_ANH_like Adenine 96.8 0.0038 8.2E-08 55.9 7.3 32 499-533 1-32 (103)
107 PF02568 ThiI: Thiamine biosyn 96.8 0.0081 1.7E-07 60.4 10.1 119 496-637 3-121 (197)
108 TIGR03679 arCOG00187 arCOG0018 96.7 0.011 2.3E-07 60.6 10.2 61 501-571 2-65 (218)
109 COG0037 MesJ tRNA(Ile)-lysidin 96.6 0.0086 1.9E-07 63.9 9.8 112 497-638 22-134 (298)
110 cd01994 Alpha_ANH_like_IV This 96.6 0.011 2.3E-07 59.6 9.3 64 499-572 2-68 (194)
111 cd01995 ExsB ExsB is a transcr 96.6 0.004 8.7E-08 60.8 5.9 52 498-555 1-52 (169)
112 PRK05370 argininosuccinate syn 96.5 0.019 4.1E-07 63.9 11.5 116 496-637 11-138 (447)
113 PRK01269 tRNA s(4)U8 sulfurtra 96.4 0.0091 2E-07 68.4 8.6 118 494-637 175-293 (482)
114 PRK02628 nadE NAD synthetase; 96.3 0.038 8.2E-07 66.0 13.3 86 465-571 341-430 (679)
115 cd01992 PP-ATPase N-terminal d 96.3 0.0069 1.5E-07 59.8 6.0 58 498-556 1-59 (185)
116 cd01713 PAPS_reductase This do 96.3 0.02 4.3E-07 55.0 9.1 65 498-572 1-65 (173)
117 PRK00074 guaA GMP synthase; Re 96.3 0.017 3.8E-07 66.5 9.9 62 498-571 217-279 (511)
118 cd01997 GMP_synthase_C The C-t 96.2 0.009 1.9E-07 63.9 6.7 62 499-571 2-63 (295)
119 PRK00768 nadE NAD synthetase; 96.2 0.018 3.8E-07 60.7 8.4 66 498-572 40-111 (268)
120 KOG2805|consensus 96.0 0.034 7.4E-07 58.6 9.2 79 497-585 6-90 (377)
121 PF00764 Arginosuc_synth: Argi 95.9 0.02 4.3E-07 63.2 7.8 71 501-583 2-72 (388)
122 PF01171 ATP_bind_3: PP-loop f 95.9 0.023 4.9E-07 56.4 7.4 65 499-571 2-67 (182)
123 COG0137 ArgG Argininosuccinate 95.7 0.096 2.1E-06 57.0 11.7 65 497-573 5-69 (403)
124 PRK05253 sulfate adenylyltrans 95.6 0.14 3E-06 55.0 12.3 55 498-556 29-85 (301)
125 COG1365 Predicted ATPase (PP-l 95.4 0.29 6.3E-06 49.1 12.6 48 468-519 35-83 (255)
126 PLN02339 NAD+ synthase (glutam 95.3 0.048 1E-06 65.2 8.5 86 466-572 329-449 (700)
127 PRK10660 tilS tRNA(Ile)-lysidi 94.6 0.087 1.9E-06 59.6 7.7 59 497-556 16-76 (436)
128 COG0519 GuaA GMP synthase, PP- 94.4 0.088 1.9E-06 54.8 6.3 33 498-532 23-55 (315)
129 COG0171 NadE NAD synthase [Coe 94.0 0.23 4.9E-06 52.4 8.7 65 498-572 27-94 (268)
130 PRK08576 hypothetical protein; 94.0 0.6 1.3E-05 52.7 12.5 53 498-556 236-288 (438)
131 COG0301 ThiI Thiamine biosynth 93.5 0.19 4.2E-06 55.3 7.4 37 493-532 172-208 (383)
132 cd01996 Alpha_ANH_like_III Thi 93.4 0.12 2.6E-06 49.5 5.1 23 130-156 103-125 (154)
133 COG0121 Predicted glutamine am 93.3 1.5 3.2E-05 46.0 13.2 55 275-330 72-133 (252)
134 TIGR02039 CysD sulfate adenyly 90.8 2.5 5.4E-05 45.3 11.7 54 499-556 22-77 (294)
135 PRK13795 hypothetical protein; 90.3 1.3 2.8E-05 52.7 9.9 59 498-570 245-304 (636)
136 PRK02090 phosphoadenosine phos 89.6 1.4 3.1E-05 45.7 8.6 60 498-571 42-102 (241)
137 PRK08557 hypothetical protein; 88.9 2 4.4E-05 48.3 9.6 53 497-556 182-235 (417)
138 PRK13794 hypothetical protein; 88.1 3.1 6.7E-05 47.8 10.6 54 497-556 248-302 (479)
139 PRK12563 sulfate adenylyltrans 87.7 3.5 7.5E-05 44.5 10.0 55 498-556 39-95 (312)
140 TIGR00289 conserved hypothetic 87.6 2.6 5.7E-05 43.3 8.7 64 498-572 2-68 (222)
141 TIGR03183 DNA_S_dndC putative 87.4 4.8 0.0001 45.7 11.4 46 497-543 14-62 (447)
142 PF01507 PAPS_reduct: Phosphoa 84.6 2 4.4E-05 41.4 5.9 51 499-556 2-53 (174)
143 PRK06850 hypothetical protein; 81.7 7.5 0.00016 44.7 9.8 72 470-554 20-95 (507)
144 cd01984 AANH_like Adenine nucl 81.0 1.6 3.4E-05 37.2 3.2 21 499-519 1-21 (86)
145 TIGR00434 cysH phosophoadenyly 79.2 5 0.00011 40.7 6.7 52 498-556 15-67 (212)
146 COG3969 Predicted phosphoadeno 78.6 8.7 0.00019 41.6 8.3 38 498-535 29-68 (407)
147 KOG1706|consensus 78.2 4.2 9.2E-05 43.2 5.7 52 497-556 6-57 (412)
148 TIGR02057 PAPS_reductase phosp 75.8 11 0.00024 38.8 8.2 52 498-555 27-79 (226)
149 PRK08349 hypothetical protein; 75.8 18 0.00039 36.2 9.5 54 205-260 145-198 (198)
150 KOG1622|consensus 73.7 15 0.00033 41.1 8.7 33 498-531 232-264 (552)
151 TIGR03573 WbuX N-acetyl sugar 72.8 1.7 3.6E-05 47.7 1.3 18 131-152 162-179 (343)
152 COG0175 CysH 3'-phosphoadenosi 69.6 11 0.00024 39.6 6.6 52 498-556 41-93 (261)
153 PF01902 ATP_bind_4: ATP-bindi 68.4 12 0.00025 38.5 6.2 64 498-571 2-67 (218)
154 KOG2303|consensus 67.2 4.6 0.0001 45.4 3.1 22 622-643 506-527 (706)
155 TIGR00290 MJ0570_dom MJ0570-re 58.5 46 0.00099 34.3 8.3 56 498-556 2-59 (223)
156 COG2102 Predicted ATPases of P 57.2 59 0.0013 33.4 8.7 80 498-587 2-86 (223)
157 COG0067 GltB Glutamate synthas 54.5 8.7 0.00019 42.4 2.5 41 214-265 11-52 (371)
158 KOG0399|consensus 50.0 61 0.0013 40.7 8.5 48 341-390 406-454 (2142)
159 PF00310 GATase_2: Glutamine a 40.9 16 0.00035 40.4 1.9 25 244-268 18-48 (361)
160 cd01713 PAPS_reductase This do 32.8 33 0.00071 32.4 2.5 17 1-17 9-25 (173)
161 PRK11509 hydrogenase-1 operon 31.4 47 0.001 31.4 3.1 38 66-103 52-89 (132)
162 PRK14428 acylphosphatase; Prov 30.8 69 0.0015 28.6 3.9 54 202-262 20-73 (97)
163 PRK14451 acylphosphatase; Prov 27.1 80 0.0017 27.6 3.7 54 202-262 15-68 (89)
164 TIGR02432 lysidine_TilS_N tRNA 27.0 1.3E+02 0.0027 29.5 5.6 27 1-27 9-36 (189)
165 PRK14445 acylphosphatase; Prov 26.7 76 0.0016 27.8 3.5 54 202-262 16-69 (91)
166 PF08057 Ery_res_leader2: Eryt 24.5 38 0.00082 18.8 0.7 13 682-694 1-13 (14)
167 PRK14444 acylphosphatase; Prov 23.6 1.1E+02 0.0023 26.9 3.8 54 202-262 16-69 (92)
168 PRK00919 GMP synthase subunit 23.0 1.1E+02 0.0024 33.0 4.6 27 1-31 31-57 (307)
169 PRK14430 acylphosphatase; Prov 22.5 1E+02 0.0023 27.0 3.5 54 202-262 16-69 (92)
170 PRK14425 acylphosphatase; Prov 22.5 1.1E+02 0.0024 27.0 3.6 54 202-262 18-71 (94)
171 TIGR00552 nadE NAD+ synthetase 21.9 98 0.0021 32.2 3.9 21 200-220 157-177 (250)
172 PF02540 NAD_synthase: NAD syn 21.7 34 0.00074 35.6 0.4 15 1-15 28-42 (242)
173 cd00553 NAD_synthase NAD+ synt 21.0 67 0.0014 33.4 2.3 16 1-16 33-48 (248)
174 PRK14440 acylphosphatase; Prov 21.0 1.4E+02 0.003 26.1 4.0 54 202-262 15-68 (90)
175 PRK14438 acylphosphatase; Prov 20.6 1.2E+02 0.0026 26.5 3.5 54 202-262 15-68 (91)
176 PRK14665 mnmA tRNA-specific 2- 20.6 97 0.0021 34.3 3.6 25 1-30 15-39 (360)
177 PRK14446 acylphosphatase; Prov 20.3 98 0.0021 27.0 2.8 54 202-262 14-67 (88)
178 PRK14421 acylphosphatase; Prov 20.1 1.4E+02 0.003 26.7 3.8 54 202-262 16-69 (99)
No 1
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3.1e-78 Score=696.60 Aligned_cols=428 Identities=18% Similarity=0.243 Sum_probs=346.9
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCC-CCCCCC
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGV-TISPQP 292 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~-~~~~QP 292 (708)
||||.++.... |. ....+.+.+|+++|+|||||++|+|..++ +++||+ +++.+. ..++||
T Consensus 1 McGI~G~~~~~------~~-------~~~~~~~~~m~~~l~hRGPD~~g~~~~~~-----~~lgh~rl~i~~~~~~~~QP 62 (589)
T TIGR03104 1 MCGICGEIRFD------GQ-------APDVAAVVRMLAVLAPRGPDAGGVHAQGP-----VALGHRRLKIIDLSEASQQP 62 (589)
T ss_pred CcEEEEEEecC------CC-------cchHHHHHHHHHhhcCCCCCcCCcEecCC-----EEEEEEeeEecCCCcCCCCC
Confidence 89999876321 11 12347899999999999999999997544 578887 567776 478999
Q ss_pred ceecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeC
Q psy18015 293 LEDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKD 366 (708)
Q Consensus 293 ~~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD 366 (708)
|.++++. ++||||||||+. ||+.+|. |.|.||||+|+++|++|| .+++++|+|||||++||+.+++++++||
T Consensus 63 ~~~~~~~~~~v~nGeiyN~~-eL~~~l~~~g~~f~~~sD~Evil~~y~~~G-~~~~~~l~G~fa~~i~d~~~~~l~laRD 140 (589)
T TIGR03104 63 MVDAELGLALVFNGCIYNYR-ELRAELEALGYRFFSDGDTEVILKAYHAWG-RDCVSRFNGMFAFAIWERDSGRLLLARD 140 (589)
T ss_pred eECCCCCEEEEECCEecCHH-HHHHHHHhcCCcccCCCHHHHHHHHHHHHH-HHHHHHhhcceEEEEEeCCCCEEEEEec
Confidence 9988876 799999999999 8887652 899999999999999999 7999999999999999999999999999
Q ss_pred CCCCcceEEEEeCCEEEEEccCccccccceecCCCceEEecCCCCcc-eeccc-CCCCCCCCCCCCceecCCceEEEEec
Q psy18015 367 PIGRHSLLLKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDF-QLGNY-HPKEPSTDPTPPEEVVDFFANVNITA 444 (708)
Q Consensus 367 ~~G~kPLyy~~~~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al-~~~~~-~~~~~~~T~~~~I~~LppG~~l~~~~ 444 (708)
|+|+|||||+..++.++||||+++ |+..+. ....++..++ .++.+ .+.+.+.|+|++|++|||||+++++.
T Consensus 141 ~~G~kPLyy~~~~~~~~faSe~ka----Ll~~~~---~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~ 213 (589)
T TIGR03104 141 RLGIKPLYYAEDAGRLRFASSLPA----LLAAGG---VDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEP 213 (589)
T ss_pred CCCCCCeEEEEeCCEEEEEeCHHH----HHhCCC---CCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEEC
Confidence 999999999999999999999998 655443 2223333333 34433 45677899999999999999999985
Q ss_pred CC-ceeEecccCCC-------CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHH
Q psy18015 445 GG-DKAVLMKTLDT-------YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLA 516 (708)
Q Consensus 445 ~~-~~~~~y~~~~~-------~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala 516 (708)
++ ...++||.+.. ..+.++++++++++|.+||++|+.+|+ |||++||||+|||+||+++
T Consensus 214 ~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~-------------pvg~~LSGGlDSs~Iaa~~ 280 (589)
T TIGR03104 214 DGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADV-------------PVGVLLSGGLDSSLIVGLL 280 (589)
T ss_pred CCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCC-------------ceeEEecCCccHHHHHHHH
Confidence 44 45678998642 235678899999999999999999987 8999999999999999998
Q ss_pred hhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccc
Q psy18015 517 NQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDD 596 (708)
Q Consensus 517 ~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~ 596 (708)
++.. ..+++|||++|++......+|..+|+++|+++++ +|+++.++++++.+.+++.++++++|. .+
T Consensus 281 ~~~~--~~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~-------~h~~i~~~~~~~~~~l~~~v~~~~~P~----~~ 347 (589)
T TIGR03104 281 AEAG--VDGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHT-------RHHKIRIPNHRVLPALPEAVAAMSEPM----VS 347 (589)
T ss_pred HHhc--CCCceEEEEEecCCCCCCCChHHHHHHHHHHhCC-------cCeEEEcCHHHHHHHHHHHHHHhCCCC----CC
Confidence 8764 3579999999976322224689999999999998 789999999999999999999998885 45
Q ss_pred hhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHhHHhcC--------------C---------C
Q psy18015 597 SLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHC--------------S---------N 653 (708)
Q Consensus 597 ~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~~~~~~--------------~---------~ 653 (708)
++.+++|++++.+ ++++||+|||+||||+||||.+|...+... . .
T Consensus 348 ~~~~~~~~l~~~a------------~~~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (589)
T TIGR03104 348 HDCVAFYLLSEEV------------SKHVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGP 415 (589)
T ss_pred chHHHHHHHHHHH------------hCCCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhh
Confidence 6778899999987 467999999999999999999885431100 0 0
Q ss_pred -----Ch---------------HHHHHHHHHHHHH-hhhccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 654 -----DW---------------SALRAQLEHEVLN-ISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 654 -----~~---------------~~L~~el~~dl~~-l~~~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
.+ ..+.+.+..|++. +...+|.|.||++||||+|+|+||||++||||+++||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~ 490 (589)
T TIGR03104 416 RFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPE 490 (589)
T ss_pred hhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHH
Confidence 00 1123333445543 334578999999999999999999999999999999975
No 2
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.7e-76 Score=674.60 Aligned_cols=396 Identities=21% Similarity=0.265 Sum_probs=333.1
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCCCCCCCCc
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGVTISPQPL 293 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~~~~~QP~ 293 (708)
||||.++.... +. .....+.+.+|+.+|+|||||++|++..++ +++||+ |++.|.+.+.|||
T Consensus 1 MCGI~g~~~~~------~~------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~-----~~lgh~RLsIid~~~g~QP~ 63 (554)
T PRK09431 1 MCGIFGILDIK------TD------ADELRKKALEMSRLMRHRGPDWSGIYASDN-----AILGHERLSIVDVNGGAQPL 63 (554)
T ss_pred CceEEEEEcCC------Cc------chhHHHHHHHHHHHhhCCCCCcCCEEEeCC-----eEEEEEEeeecCCCCCCCCC
Confidence 89999876321 10 011246789999999999999999987654 467775 6798887899999
Q ss_pred eecCCc-EEEEEEEEecCchhhcccc----CCCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCC
Q psy18015 294 EDVDGN-VLLWNGDVYNFTSEDNKTI----ESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPI 368 (708)
Q Consensus 294 ~~~~g~-v~v~NGeIyN~~~el~~~l----~~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~ 368 (708)
.+.++. +++||||||||. +|+.+| .|+|.||||+|+++|++|| .+++++|+|||||++||+.+++++++||++
T Consensus 64 ~~~~~~~~lv~NGEIyN~~-eLr~~L~~~~~f~t~sD~Evil~ly~~~G-~~~~~~L~G~FAf~i~D~~~~~l~laRD~~ 141 (554)
T PRK09431 64 YNEDGTHVLAVNGEIYNHQ-ELRAELGDKYAFQTGSDCEVILALYQEKG-PDFLDDLDGMFAFALYDSEKDAYLIARDPI 141 (554)
T ss_pred CcCCCCEEEEEEEEEecHH-HHHHHHhccCCcCCCCHHHHHHHHHHHHH-HHHHHhCCCceEEEEEECCCCEEEEEeCCC
Confidence 988876 689999999999 888765 3899999999999999999 789999999999999999999999999999
Q ss_pred CCcceEEEEeC-CEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCCc
Q psy18015 369 GRHSLLLKCTP-TSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGD 447 (708)
Q Consensus 369 G~kPLyy~~~~-~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~~ 447 (708)
|+|||||+..+ +.++||||+++ |... .++|++|||||++.++.+
T Consensus 142 GikPLyy~~~~~~~~~faSE~ka----L~~~-----------------------------~~~I~~lpPGh~l~~~~g-- 186 (554)
T PRK09431 142 GIIPLYYGYDEHGNLYFASEMKA----LVPV-----------------------------CKTIKEFPPGHYYWSKDG-- 186 (554)
T ss_pred CCcceEEEEeCCCeEEEecchHH----HHHh-----------------------------cCCEEEECCCeEEEECCC--
Confidence 99999999887 99999999987 4310 156999999999988644
Q ss_pred eeEecccCCC-----CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCC
Q psy18015 448 KAVLMKTLDT-----YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPS 522 (708)
Q Consensus 448 ~~~~y~~~~~-----~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~ 522 (708)
+..+||.+.. ..+.++++++++++|.+||++|+.+|+ |||++||||||||+||+++++....
T Consensus 187 ~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdv-------------pvGv~LSGGLDSSlIaala~~~~~~ 253 (554)
T PRK09431 187 EFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDV-------------PYGVLLSGGLDSSLISAIAKKYAAR 253 (554)
T ss_pred cEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCC-------------ceEEEcCCCccHHHHHHHHHHhhcc
Confidence 5667887531 235678899999999999999999987 8999999999999999999887531
Q ss_pred C-----------CCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCC
Q psy18015 523 S-----------EPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLD 591 (708)
Q Consensus 523 ~-----------~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~ 591 (708)
. .+++|||++|++ ++|..+|+++|+++++ +||++.++.+++.+.+++.+++++.+.
T Consensus 254 ~~~~~~~~~~~~~~l~tfsig~~~-----~~D~~~A~~vA~~lg~-------~h~~v~~t~~e~~~~l~~vi~~le~~d- 320 (554)
T PRK09431 254 RIEDDERSEAWWPQLHSFAVGLEG-----SPDLKAAREVADHLGT-------VHHEIHFTVQEGLDALRDVIYHLETYD- 320 (554)
T ss_pred cccccccccccCCCceEEEEeCCC-----CChHHHHHHHHHHhCC-------ccEEEEeCHHHHHHHHHHHHHHHhccC-
Confidence 1 269999999975 4699999999999998 799999999999999999999988742
Q ss_pred ccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHhHHhcCCCChHHHHHHHHHHHHHhhh
Q psy18015 592 TVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISR 671 (708)
Q Consensus 592 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~~~~~~~~~~~~L~~el~~dl~~l~~ 671 (708)
|+...+++++|++++.+ +++++||+|||+|||||||||.+|+.+. ..+.+.++...++.+++.
T Consensus 321 -p~~~~~~~p~yll~~~~-----------~~~gvkvvLsGeGaDElFgGY~~~~~~p-----~~~~~~~e~~~~~~~l~~ 383 (554)
T PRK09431 321 -VTTIRASTPMYLMARKI-----------KAMGIKMVLSGEGADELFGGYLYFHKAP-----NAKEFHEETVRKLRALHM 383 (554)
T ss_pred -CccchhHHHHHHHHHHH-----------HHcCCEEEEecCchhhhhcCchhhhhCC-----ChhhcCHHHHHHHHHHHH
Confidence 23346678999999986 2678999999999999999999986431 123445566667777888
Q ss_pred ccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 672 RNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 672 ~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
.+|.|+||++||||+|+|+||||++||+|+++||++
T Consensus 384 ~~l~r~Dr~~ma~glE~RvPFLD~~lv~~a~~ip~~ 419 (554)
T PRK09431 384 YDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPE 419 (554)
T ss_pred HhhhccchhhhhcCceeecCcCCHHHHHHHHhCCHH
Confidence 899999999999999999999999999999999975
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1e-75 Score=670.70 Aligned_cols=404 Identities=20% Similarity=0.257 Sum_probs=333.2
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCCCCCCCCc
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGVTISPQPL 293 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~~~~~QP~ 293 (708)
||||.++.... +.. ....+.+.+|+++|+|||||++|++.........+++||+ |++.|.+.+.|||
T Consensus 1 MCGI~gi~~~~------~~~------~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~ 68 (586)
T PTZ00077 1 MCGILAIFNSK------GER------HELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPL 68 (586)
T ss_pred CceEEEEEecC------Cch------hhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCc
Confidence 89999876321 100 1113567899999999999999998742100112567885 6798887799999
Q ss_pred eecCCc-EEEEEEEEecCchhhcccc-----CCCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCC
Q psy18015 294 EDVDGN-VLLWNGDVYNFTSEDNKTI-----ESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDP 367 (708)
Q Consensus 294 ~~~~g~-v~v~NGeIyN~~~el~~~l-----~~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~ 367 (708)
.++++. ++|||||||||. +||.+| .|+|.||+|+|+++|++||..+++++|+|||||++||+.+++++++||+
T Consensus 69 ~~~d~~~~lv~NGEIYN~~-eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~ 147 (586)
T PTZ00077 69 LDDDETVALMQNGEIYNHW-EIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDH 147 (586)
T ss_pred CCCCCCEEEEEEEEEcCHH-HHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECC
Confidence 998876 699999999999 888765 2899999999999999999328999999999999999999999999999
Q ss_pred CCCcceEEEEe-CCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCC
Q psy18015 368 IGRHSLLLKCT-PTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGG 446 (708)
Q Consensus 368 ~G~kPLyy~~~-~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~ 446 (708)
+|+|||||+.. ++.++||||+++ |... .++|+++||||++.++.+.
T Consensus 148 ~GikPLyy~~~~~g~~~faSE~ka----L~~~-----------------------------~~~I~~lpPGh~l~~~~~~ 194 (586)
T PTZ00077 148 IGIIPLYIGYAKDGSIWFSSELKA----LHDQ-----------------------------CVEVKQFPPGHYYDQTKEK 194 (586)
T ss_pred CCCcCeEEEEecCCeEEEEecHHH----HHHh-----------------------------cCCEEEeCCCcEEEecCCc
Confidence 99999999974 688999999987 4210 1468999999999987554
Q ss_pred ceeEecccCCC------CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhC
Q psy18015 447 DKAVLMKTLDT------YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFV 520 (708)
Q Consensus 447 ~~~~~y~~~~~------~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~ 520 (708)
...++||.+.. ..+.++.+++++++|.+||++|+++|+ |||++||||||||+||++++++.
T Consensus 195 ~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdv-------------pvGv~LSGGLDSSlIaala~~~~ 261 (586)
T PTZ00077 195 GEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDV-------------PFGLFLSGGLDSSIVAAIVAKLI 261 (586)
T ss_pred ceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCC-------------ceEEEecCCchHHHHHHHHHHhh
Confidence 55678887531 234577889999999999999999987 89999999999999999998875
Q ss_pred CC---------CCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCC
Q psy18015 521 PS---------SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLD 591 (708)
Q Consensus 521 ~~---------~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~ 591 (708)
+. ..+++|||++|++ ++|..+|+++|+++++ +|+++.++.+++.+.+++.+++++.|..
T Consensus 262 ~~~~~~~~~~~~~~l~tfsig~~~-----~~D~~~Ar~vA~~lg~-------~h~~i~~~~~e~~~~l~~~i~~le~~~~ 329 (586)
T PTZ00077 262 KNGEIDLSKRGMPKLHSFCIGLEG-----SPDLKAARKVAEYLGT-------EHHEFTFTVEEGIDALPDVIYHTETYDV 329 (586)
T ss_pred cccccccccccCCCceEEEcCCCC-----CchHHHHHHHHHHhCC-------cCcEEEECHHHHHHHHHHHHHHhcCCCC
Confidence 31 1469999999964 4799999999999998 7899999999999999999999998853
Q ss_pred ccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHhHHhcCCCChHHHHHHHHHHHHHhhh
Q psy18015 592 TVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISR 671 (708)
Q Consensus 592 ~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~~~~~~~~~~~~L~~el~~dl~~l~~ 671 (708)
+. ..+++++|++++.+ ++.|+||+|||+|||||||||.+|+.+.. .+.+.+++..+++.++.
T Consensus 330 ~~--~~~~~p~yll~r~a-----------~~~gvkVvLsGeGaDElFgGY~~~~~ap~-----~~~~~~e~~~~l~~l~~ 391 (586)
T PTZ00077 330 TT--IRASTPMYLLSRRI-----------KALGIKMVLSGEGSDELFGGYLYFHKAPN-----REEFHRELVRKLHDLHK 391 (586)
T ss_pred CC--cchHHHHHHHHHHH-----------HhcCCeEEEecCchhhhccCcHhhhhCcc-----hHHHHHHHHHHHHHHhc
Confidence 32 35678999999987 36689999999999999999999864321 23455666556777777
Q ss_pred ccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 672 RNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 672 ~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
.+|.|+||++||||+|+|+||||++||+|+++||++
T Consensus 392 ~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~ 427 (586)
T PTZ00077 392 YDCLRANKATMAWGIEARVPFLDKDFLEYVMNIDPK 427 (586)
T ss_pred cCCchhhHHHHhcCceeecCcCCHHHHHHHHhCCHH
Confidence 889999999999999999999999999999999985
No 4
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.2e-74 Score=658.06 Aligned_cols=396 Identities=21% Similarity=0.260 Sum_probs=330.3
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCCCCCCCCc
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGVTISPQPL 293 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~~~~~QP~ 293 (708)
||||.++.... +. .....+.+.+|+.+|+|||||++|++..++ +++||+ |++.|.+.+.|||
T Consensus 1 MCGI~g~~~~~------~~------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~-----~~Lgh~RLsI~d~~~g~QP~ 63 (578)
T PLN02549 1 MCGILAVLGCS------DD------SQAKRSRVLELSRRLRHRGPDWSGLYGNED-----CYLAHERLAIMDPESGDQPL 63 (578)
T ss_pred CCcEEEEEeCC------CC------cchhHHHHHHHHHHhcCcCCCccCEEEeCC-----eEEEEeeeeEeCCCCCCCCc
Confidence 89999876321 10 011346788999999999999999987554 457775 6788887899999
Q ss_pred eecCCc-EEEEEEEEecCchhhccccC---CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCC
Q psy18015 294 EDVDGN-VLLWNGDVYNFTSEDNKTIE---STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIG 369 (708)
Q Consensus 294 ~~~~g~-v~v~NGeIyN~~~el~~~l~---~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G 369 (708)
.++++. +++||||||||. +||.+|. |+|.||+|+|+++|++|| .+++++|+|||||++||..+++++++||++|
T Consensus 64 ~~~~~~~~lv~NGEIyN~~-eLr~~L~~~~f~t~sD~Evil~ly~~~G-~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~G 141 (578)
T PLN02549 64 YNEDKTIVVTANGEIYNHK-ELREKLKLHKFRTGSDCEVIAHLYEEHG-EEFVDMLDGMFSFVLLDTRDNSFIAARDHIG 141 (578)
T ss_pred CcCCCCEEEEEEEEEEcHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHH-HHHHHhCCCceEEEEEECCCCEEEEEECCCC
Confidence 998876 699999999999 8887653 899999999999999999 7899999999999999998899999999999
Q ss_pred CcceEEEEe-CCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCCce
Q psy18015 370 RHSLLLKCT-PTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDK 448 (708)
Q Consensus 370 ~kPLyy~~~-~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~~~ 448 (708)
+|||||+.. ++.++||||+++ |... .++|+.+||||++.++.++
T Consensus 142 ikPLyyg~~~~g~~~fASE~Ka----L~~~-----------------------------~~~I~~lpPGh~l~~~~~~-- 186 (578)
T PLN02549 142 ITPLYIGWGLDGSVWFASEMKA----LCDD-----------------------------CERFEEFPPGHYYSSKAGG-- 186 (578)
T ss_pred CCCeEEEEecCCeEEEEecHHH----HHHH-----------------------------hCCEEEeCCCeEEEEcCCC--
Confidence 999999986 688999999998 4310 1468899999999986433
Q ss_pred eEecccCCC----CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCC-
Q psy18015 449 AVLMKTLDT----YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSS- 523 (708)
Q Consensus 449 ~~~y~~~~~----~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~- 523 (708)
..+||.+.. .++.++..++++++|++||++|+.+|+ |+|++||||||||+||++++++.+..
T Consensus 187 ~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdv-------------pvgv~LSGGLDSSlIaala~~~~~~~~ 253 (578)
T PLN02549 187 FRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDV-------------PFGVLLSGGLDSSLVASIAARHLAETK 253 (578)
T ss_pred EEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCC-------------ceeEeecCCccHHHHHHHHHHhhhhcc
Confidence 456776531 234456789999999999999999987 89999999999999999998874321
Q ss_pred ------CCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccch
Q psy18015 524 ------EPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDS 597 (708)
Q Consensus 524 ------~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~ 597 (708)
.+++|||++|++ ++|..+|+++|+++++ .|+++.++.+++.+.+++.+++++... ++...
T Consensus 254 ~~~~~~~~l~tfsig~~~-----~~D~~~Ar~vA~~lg~-------~h~ev~~~~~e~~~~l~~~i~~le~~d--p~~~~ 319 (578)
T PLN02549 254 AARQWGQQLHSFCVGLEG-----SPDLKAAREVADYLGT-------VHHEFHFTVQEGIDAIEDVIYHLETYD--VTTIR 319 (578)
T ss_pred cccccCCCceEEecCCCC-----CCHHHHHHHHHHHhCC-------CCeEEEEChHHHHHHHHHHHHHhcCCC--Cccch
Confidence 479999999864 4699999999999998 789999999999999899999887732 23345
Q ss_pred hhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHhHHhcCCCChHHHHHHHHHHHHHhhhccccch
Q psy18015 598 LGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRD 677 (708)
Q Consensus 598 ~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~~~~~~~~~~~~L~~el~~dl~~l~~~~L~r~ 677 (708)
.++++|++++.+ ++.|+||+|||+||||+||||.+|+.+.. .+.+.+|+..++..++..+|.|+
T Consensus 320 ~s~p~yll~r~a-----------~~~gvkVvLsGeGaDElFgGY~~~~~ap~-----~~~~~~e~~~~~~~l~~~~l~r~ 383 (578)
T PLN02549 320 ASTPMFLMSRKI-----------KSLGVKMVLSGEGSDEIFGGYLYFHKAPN-----KEEFHKETCRKIKALHQYDCLRA 383 (578)
T ss_pred hHHHHHHHHHHH-----------HhcCCEEEEecCchHhhhcChHhhhhCCC-----HHHHHHHHHHHHHHHhhhhcccc
Confidence 678999999987 36789999999999999999999864321 23466677777777887899999
Q ss_pred hHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 678 NRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 678 DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
||++|+||+|+|+||||++||+++++||++
T Consensus 384 Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~ 413 (578)
T PLN02549 384 NKSTSAWGLEARVPFLDKEFIDVAMSIDPE 413 (578)
T ss_pred chhhhhcCceEECCcCCHHHHHHHHhCCHH
Confidence 999999999999999999999999999985
No 5
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=2.7e-74 Score=650.02 Aligned_cols=408 Identities=22% Similarity=0.293 Sum_probs=340.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcE-EecCCcceeeEeeEE-EecCCCCCCCCCceecCCc-EEEEEEEEecCchhhccccC-
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQL-TISEDCATCTFLASV-RWTQGVTISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE- 319 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~-~~~~~~~~~~~~g~~-l~~~g~~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~- 319 (708)
.+.+.+|+++|+|||||++|+| ..++ +++||+ +++.|.+.+.|||.++++. ++||||||||+. ||+++|.
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~-----~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~-eL~~~l~~ 88 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGN-----AILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE-ELREELEA 88 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCC-----EEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH-HHHHHHHh
Confidence 3579999999999999999998 5433 567886 6788876679999998876 699999999999 8877552
Q ss_pred ----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCccccccc
Q psy18015 320 ----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKSIPRI 395 (708)
Q Consensus 320 ----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a~~~~l 395 (708)
|++.||||+|+++|++|| .+++++|+|+|||++||+.+++++++||++|+|||||+..++.++||||+++ |
T Consensus 89 ~g~~~~~~~D~e~il~~y~~~g-~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~~~~~~faSe~ka----L 163 (467)
T TIGR01536 89 KGYTFQTDSDTEVILHLYEEWG-EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYDGGQLYFASEIKA----L 163 (467)
T ss_pred cCCccCCCCHHHHHHHHHHHHH-HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEECCEEEEEecHHH----H
Confidence 899999999999999999 8999999999999999999999999999999999999999999999999998 5
Q ss_pred eecCCCceEEecCCCCcc-eecccCCCCCCCCCCCCceecCCceEEEEecCC-ceeEecccCC--CCCChhHHHHHHHHH
Q psy18015 396 EEIPNTHIYSVDITCPDF-QLGNYHPKEPSTDPTPPEEVVDFFANVNITAGG-DKAVLMKTLD--TYPLFCDNVAELTKL 471 (708)
Q Consensus 396 ~~~p~~~~~~~d~~~~al-~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~-~~~~~y~~~~--~~~~~e~~~~~l~~~ 471 (708)
..++.. +...++..++ .++.+++.+.+.|+|++|++||||+++.++.++ ...++||... ...+.++++++++++
T Consensus 164 ~~~~~~--~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~ 241 (467)
T TIGR01536 164 LAHPRN--IKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERRDEHTDSEEDLVDELRSL 241 (467)
T ss_pred Hhcccc--CcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence 544311 1223333333 456667778889999999999999999998655 3455677632 234578899999999
Q ss_pred HHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHH
Q psy18015 472 LTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSL 551 (708)
Q Consensus 472 L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va 551 (708)
|.+||++|+.+++ |||++||||+|||+||+++++..+ ..++.+||++|++.. +.+|..+|+++|
T Consensus 242 l~~aV~~r~~~~~-------------~vg~~LSGGlDSs~iaa~a~~~~~-~~~~~~~t~~~~~~~--~~~E~~~A~~vA 305 (467)
T TIGR01536 242 LEDAVKRRLVADV-------------PVGVLLSGGLDSSLVAAIARREAP-RGPVHTFSIGFEGSP--DFDESPYARKVA 305 (467)
T ss_pred HHHHHHHHhccCC-------------ceEEEecCChhHHHHHHHHHHhcC-CCCceEEEEecCCCC--CCChHHHHHHHH
Confidence 9999999999876 899999999999999999988753 147999999998422 345788999999
Q ss_pred HHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEec
Q psy18015 552 QELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLG 631 (708)
Q Consensus 552 ~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG 631 (708)
++++. +|+++.++.+++.+.+++.++.++.|. ..+..+++|++++.+ ++.|++|+|||
T Consensus 306 ~~lg~-------~~~~i~~~~~~~~~~~~~~v~~~~~p~----~~~~~~~~~~l~~~a-----------~~~G~~vlltG 363 (467)
T TIGR01536 306 DHLGT-------EHHEVLFSVEEGLDALPEVIYHLEDPT----TIRASIPLYLLSKLA-----------REDGVKVVLSG 363 (467)
T ss_pred HHhCC-------cCeEEECCHHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHH-----------HhcCCEEEEec
Confidence 99997 789999999999988888888887664 456678889999987 36789999999
Q ss_pred cccccccCCchhhHhHHhcCCCChHHH-HHHHHHHHHHhhhccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 632 MGADELLGGYTRHRTILRHCSNDWSAL-RAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 632 ~GaDElFgGY~r~~~~~~~~~~~~~~L-~~el~~dl~~l~~~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
+||||+||||.+|..+.. ...+ .+.+..|++.++..+|.+.||++|+||+|+|+||||++||+|+.+||++
T Consensus 364 ~GaDElf~GY~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~ 435 (467)
T TIGR01536 364 EGADELFGGYLYFHEAPA-----AEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPE 435 (467)
T ss_pred CcchhcccCchhhhhccc-----cHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHH
Confidence 999999999999865321 1223 3445567888888888888999999999999999999999999999975
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=8.3e-72 Score=650.60 Aligned_cols=364 Identities=19% Similarity=0.257 Sum_probs=301.3
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCCCCCCCCc
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGVTISPQPL 293 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~~~~~QP~ 293 (708)
||||.++.... +. .....+.+.+|+.+|+|||||++|+|..++ +++||+ +++.+.+.+.|||
T Consensus 1 McGI~G~~~~~------~~------~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~-----~~lgh~rl~i~d~~~~~qP~ 63 (628)
T TIGR03108 1 MCGITGIFDLT------GQ------RPIDRDLLRRMNDAQAHRGPDGGGVHVEPG-----IGLGHRRLSIIDLSGGQQPL 63 (628)
T ss_pred CCEEEEEEECC------CC------ccccHHHHHHHHHHhcCCCCCccCeEeeCC-----EEEEEEeeeecCCCCCCCCc
Confidence 89999876321 11 012346789999999999999999987554 578886 5777766789999
Q ss_pred eecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCC
Q psy18015 294 EDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDP 367 (708)
Q Consensus 294 ~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~ 367 (708)
.++++. ++||||||||+. ||+.+|. |.|.||||+|+++|++|| .+++++|+|+|||++||+.+++++++||+
T Consensus 64 ~~~~~~~~lv~nGei~N~~-eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-~~~~~~l~G~fa~~~~d~~~~~l~~~rD~ 141 (628)
T TIGR03108 64 FNEDGSVVVVFNGEIYNFQ-ELVAELQALGHVFRTRSDTEVIVHAWEEWG-EACVERFRGMFAFALWDRNQETLFLARDR 141 (628)
T ss_pred CcCCCCEEEEECCeECCHH-HHHHHHHhcCCccCCCChHHHHHHHHHHHH-HHHHHHcCCCEEEEEEECCCCEEEEEECC
Confidence 998876 689999999999 8877652 889999999999999999 78999999999999999999999999999
Q ss_pred CCCcceEEEEe-CCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCC
Q psy18015 368 IGRHSLLLKCT-PTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGG 446 (708)
Q Consensus 368 ~G~kPLyy~~~-~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~ 446 (708)
+|+|||||+.. ++.++|||++++ ++..+.. ..++|....+ .++.+++.+.+.|+|++|++|||||++.++.++
T Consensus 142 ~G~~PLyy~~~~~~~~~faSe~~a----l~~~~~~-~~~~d~~~l~-~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~ 215 (628)
T TIGR03108 142 LGIKPLYYALLADGWFIFGSELKA----LTAHPSL-PRELDPLAVE-DYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGA 215 (628)
T ss_pred CCCcceEEEEeCCCEEEEEecHHH----HHhCCCC-CCCCCHHHHH-HHHhcCCCCCCCchhcCcEEECCCeEEEEECCC
Confidence 99999999975 678999999998 5554431 1234444322 566778888889999999999999999998654
Q ss_pred --ceeEecccCCC----CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhC
Q psy18015 447 --DKAVLMKTLDT----YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFV 520 (708)
Q Consensus 447 --~~~~~y~~~~~----~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~ 520 (708)
.+.++||.+.. ..+.++++++++++|.+||++|+.+|+ |||++||||||||+||+++++..
T Consensus 216 ~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~-------------~vg~~LSGGlDSs~Iaa~~~~~~ 282 (628)
T TIGR03108 216 PPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADV-------------PLGAFLSGGVDSSAVVALMAGLS 282 (628)
T ss_pred cceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-------------cceEeecCCccHHHHHHHHHHhc
Confidence 34568998642 235788999999999999999999987 89999999999999999988764
Q ss_pred CCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhH
Q psy18015 521 PSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGC 600 (708)
Q Consensus 521 ~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~ 600 (708)
..+++|||++|++. ..+|..+|+.+|+++++ +|+++.++++++ +.+.+.+...++|. .+++.+
T Consensus 283 --~~~i~t~s~~~~~~---~~dE~~~A~~vA~~~g~-------~h~~~~~~~~~~-~~~~~~~~~~~~P~----~~~~~~ 345 (628)
T TIGR03108 283 --DTPVNTCSIAFDDP---AFDESAYARQVAERYGT-------NHRVETVDPDDF-SLVDRLAGLYDEPF----ADSSAL 345 (628)
T ss_pred --CCCCcEEEEecCCC---CCChHHHHHHHHHHhCC-------CCeEEecCHHHH-HHHHHHHHHhCCCC----CCchHH
Confidence 35799999999753 24689999999999998 789999998884 55677788888875 356678
Q ss_pred HHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhH
Q psy18015 601 AVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHR 645 (708)
Q Consensus 601 ~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~ 645 (708)
++|++++.+ ++++||+|||+||||+||||.+|.
T Consensus 346 ~~~~~~~~a------------~~~~kV~LsG~GgDElf~GY~~~~ 378 (628)
T TIGR03108 346 PTYRVCELA------------RKRVTVALSGDGGDELFAGYRRYR 378 (628)
T ss_pred HHHHHHHHH------------HCCCCEEEeccchhhcccCcHHHH
Confidence 899999977 467999999999999999998775
No 7
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-70 Score=621.69 Aligned_cols=401 Identities=24% Similarity=0.343 Sum_probs=339.0
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEE-EecCCCCCCCCCc
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASV-RWTQGVTISPQPL 293 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~-l~~~g~~~~~QP~ 293 (708)
||||.++...+ . .....+.+.+|.+.|.|||||+.|+|...+ ..+||+ |++.|...++|||
T Consensus 1 MCGI~g~~~~~------~-------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~-----~~~gh~rL~i~d~~~g~QP~ 62 (542)
T COG0367 1 MCGIAGILNFK------N-------LIDAKSIIEEMTKLLRHRGPDDSGVWISLN-----ALLGHRRLSIVDLSGGRQPM 62 (542)
T ss_pred CCceeeeeccc------c-------cccchHHHHHHHHHhhccCCCccccEecCC-----ceeeeeEEEEeccccCCCCc
Confidence 89999876421 0 012268899999999999999999998443 467775 6888887789999
Q ss_pred eecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCC
Q psy18015 294 EDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDP 367 (708)
Q Consensus 294 ~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~ 367 (708)
.+.++. +++||||||||. |||+++. |+|.||||||+++|++|| .+|+++|+|||||++||..+++|+++|||
T Consensus 63 ~~~~~~~~l~~NGEIYN~~-elr~~l~~~g~~f~t~sDtEvil~~y~~~g-~~~~~~l~G~fAfai~d~~~~~l~laRD~ 140 (542)
T COG0367 63 IKEGGKYAIVYNGEIYNVE-ELRKELREAGYEFRTYSDTEVILTLYEEWG-EDCVEHLNGMFAFAIYDETRQKLFLARDP 140 (542)
T ss_pred ccCCCcEEEEECCEeeeHH-HHHHHHHhcCceeccccchHHHHHHHHHHH-HHHHHHhccceEEEEEECCCCEEEEEecC
Confidence 986664 799999999999 8887664 999999999999999999 78999999999999999999999999999
Q ss_pred CCCcceEEEEeCCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCCc
Q psy18015 368 IGRHSLLLKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGD 447 (708)
Q Consensus 368 ~G~kPLyy~~~~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~~ 447 (708)
||+|||||+..++.++||||+++ +..+ +. . . ++++|+.|||||.+.++.++.
T Consensus 141 ~GikPLyy~~~~~~l~faSE~Ka----l~~~-~~--~---------~------------~~~~i~~l~pg~~l~~~~~~~ 192 (542)
T COG0367 141 FGVKPLYYTSKNENLAFASEIKA----LLAH-PV--V---------R------------FLRDIKELPPGHLLEFTDGGL 192 (542)
T ss_pred CCccccEEEecCCceEEEechhh----hhhC-Cc--c---------c------------ccCCeEEcCCCcEEEEcCCCc
Confidence 99999999999999999999998 5443 10 0 0 788999999999999987765
Q ss_pred eeEecccCCC---CCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCC
Q psy18015 448 KAVLMKTLDT---YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSE 524 (708)
Q Consensus 448 ~~~~y~~~~~---~~~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~ 524 (708)
.++||.+.. ..+.++..++++++|.+||++|+++|+ |+|++||||+|||+||+++++..+. .
T Consensus 193 -~~~y~~~~~~~~~~~~~~~~~~l~~~l~~sV~~r~~adv-------------pvg~~lSGGlDSS~Iaa~a~~~~~~-~ 257 (542)
T COG0367 193 -IRRYWRLSEKTSKESADELAEHLRSLLEDAVKRRLVADV-------------PVGVFLSGGLDSSLIAAIAAEELGK-E 257 (542)
T ss_pred -eeeeecccccccccchHHHHHHHHHHHHHHHHHHhccCC-------------cEEEEeCCCccHHHHHHHHHHhccc-c
Confidence 778887642 235788899999999999999999987 8999999999999999999998642 2
Q ss_pred CeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHH
Q psy18015 525 PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWF 604 (708)
Q Consensus 525 ~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~ 604 (708)
...|||++|+++. .+|..+|+.+|++|++ +|+++.++.+|+.+.+++.+++++.|.. .++++|+|+
T Consensus 258 ~~~~fsvg~~~~~---~~D~~~a~~~A~~lg~-------~h~~~~~~~~e~~~~~~~vv~~~~~p~~----~~~~~ply~ 323 (542)
T COG0367 258 GKTTFTVGFEDSD---SPDAKYARAVAKFLGT-------PHHEIILTNEELLNALPEVVKALDTPGG----MAASIPLYL 323 (542)
T ss_pred ceeeeEeecCCCC---CchHHHHHHHHHHhCC-------CcEEEeecHHHHHHHHHHHHhhcCCCCc----ccchhHHHH
Confidence 2336999998742 4699999999999998 7999999999999999999999998863 577899999
Q ss_pred HHHhccccCCCCCCCCCCCCceEEEeccccccccCCch-hhHhHHhcCCCChHHHHHHHHHHHHHhhhccccchhHHHHh
Q psy18015 605 AARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYT-RHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCD 683 (708)
Q Consensus 605 l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~-r~~~~~~~~~~~~~~L~~el~~dl~~l~~~~L~r~DR~sma 683 (708)
+++.+ +++++||+|||||||||||||+ ++.... ..+..+.+++..++......++.|+|++.|+
T Consensus 324 ~~~~a-----------~~~g~kVvLSGeGADElFgGY~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~ 388 (542)
T COG0367 324 LSRKA-----------RAEGEKVVLSGEGADELFGGYPPYSRFAP----GPEELLNEALRRALALIDYNRLARDDRVAAA 388 (542)
T ss_pred HHHhh-----------hhcCcEEeecCccHHHHhcCCchhhhhcc----chHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Confidence 99988 4778899999999999999994 433211 1245566667777776666678999999999
Q ss_pred cCceeeccCCCHHHHHHHhcCCCC
Q psy18015 684 HGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 684 ~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
+++|.|+||+|.+++++++++|+.
T Consensus 389 ~~~E~r~p~ld~~~~~l~l~~~~~ 412 (542)
T COG0367 389 FGVEARVPFLDRELVDLALKIPPE 412 (542)
T ss_pred cccccccCchHHHHHHHHhcCCcc
Confidence 999999999999999999999875
No 8
>KOG0571|consensus
Probab=100.00 E-value=3.6e-68 Score=555.83 Aligned_cols=381 Identities=22% Similarity=0.276 Sum_probs=314.4
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEEEecCCCCCCCCCceecCCc-EEEEEEEEecCchhhccccC---
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE--- 319 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~l~~~g~~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~--- 319 (708)
.+...+...+++|||||=+|.+.... . ++..|||.+.|+..++||++..++. ++.+||||||++ +||..+.
T Consensus 17 ~~~~l~ls~~~~hRgpd~sg~~~~~~-~---~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYNH~-~Lr~~~~~~~ 91 (543)
T KOG0571|consen 17 KPKALELSRRIRHRGPDWSGLAQRND-N---ILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYNHK-KLREHCKDFE 91 (543)
T ss_pred ChhhhhHHHhhcCCCCCcchhheecc-c---cccccceeEecCCcCCcccccCCCcEEEEECceeccHH-HHHHHhhhcc
Confidence 35567788899999999998876554 1 4556789999988899999998876 467999999999 8887543
Q ss_pred CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeC-CEEEEEccCccccccceec
Q psy18015 320 STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTP-TSILVTSVAHKSIPRIEEI 398 (708)
Q Consensus 320 ~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~-~~~~faSe~~a~~~~l~~~ 398 (708)
|+|.||+|+|+++|++.|..++...|+|+|||+++|...++++++||++|++||||+++. +.++||||.+. +...
T Consensus 92 ~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~----l~d~ 167 (543)
T KOG0571|consen 92 FQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKC----LEDD 167 (543)
T ss_pred cccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhh----hhhh
Confidence 899999999999999997799999999999999999998999999999999999999874 89999999987 2110
Q ss_pred CCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCCceeEecccCC----C-CCChhHHHHHHHHHHH
Q psy18015 399 PNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLD----T-YPLFCDNVAELTKLLT 473 (708)
Q Consensus 399 p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~~~~~~y~~~~----~-~~~~e~~~~~l~~~L~ 473 (708)
- +.|...||||+...+.++. .+|.+|+ . ..+.-++ -.+|+.|+
T Consensus 168 ---------C--------------------~~i~~fpPgh~y~~~~~~~--~r~f~p~w~~~~~~s~p~d~-~~~r~~~~ 215 (543)
T KOG0571|consen 168 ---------C--------------------EKIESFPPGHYYTSKTGKL--TRYFNPEWFDENIPSTPLDY-LALRHTLE 215 (543)
T ss_pred ---------h--------------------hceeecCCcceeecccccc--cCCCCchhhhccCCCCcccH-HHHHHHHH
Confidence 0 1123346666665544331 1222211 1 1111122 23999999
Q ss_pred HHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCC-----CCCeeEEEEeecCCCCCCCchhHHHH
Q psy18015 474 QSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPS-----SEPIDLLNVAFEKNQNYNVPDRLTGL 548 (708)
Q Consensus 474 ~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~-----~~~i~tftv~f~~~~~~d~~D~~~A~ 548 (708)
+||++||++|+ |+|++||||||||+||++|++.+.+ +.++++|+||+++ +||..+|+
T Consensus 216 ~aV~KRLM~d~-------------p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~-----SPDL~aar 277 (543)
T KOG0571|consen 216 KAVRKRLMTDV-------------PFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLED-----SPDLLAAR 277 (543)
T ss_pred HHHHHHhhccC-------------ceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCC-----ChhHHHHH
Confidence 99999999987 8999999999999999999877642 3489999999985 79999999
Q ss_pred HHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEE
Q psy18015 549 SSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVL 628 (708)
Q Consensus 549 ~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVv 628 (708)
+||+++|+ .||++.++.++-++.+++.|++++....|.+. .+.|+|++++.+ ++.|+|||
T Consensus 278 kVAd~igt-------~Hhe~~ft~qegidal~eVI~hLETYDvttIR--astpmyLlsr~I-----------kk~gvkmv 337 (543)
T KOG0571|consen 278 KVADFIGT-------IHHEHTFTIQEGIDALDEVIYHLETYDVTTIR--ASTPMYLLSRKI-----------KKLGVKMV 337 (543)
T ss_pred HHHHHhCC-------cceEEEEcHHHHHHHHHHHheeeeccccceEe--cCCchHHHHHHH-----------HhcceEEE
Confidence 99999999 79999999999999999999999876555543 457899999998 47889999
Q ss_pred EeccccccccCCchhhHhHHhcCCCChHHHHHHHHHHHHHhhhccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCCC
Q psy18015 629 LLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSWQ 708 (708)
Q Consensus 629 LsG~GaDElFgGY~r~~~~~~~~~~~~~~L~~el~~dl~~l~~~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~~ 708 (708)
|||+|+||+||||-++.++.+ -+.+++|....+..|+.....|+||.+||||+|+|+||||+++++++++||+++
T Consensus 338 lSGEGsDEifggYlYfh~APs-----~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~ 412 (543)
T KOG0571|consen 338 LSGEGSDEIFGGYLYFHKAPS-----AEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEE 412 (543)
T ss_pred EecCCchhhhcceeeeecCCC-----HHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhH
Confidence 999999999999999876532 467788888888999999999999999999999999999999999999999874
No 9
>KOG0573|consensus
Probab=100.00 E-value=1.9e-59 Score=493.99 Aligned_cols=211 Identities=37% Similarity=0.523 Sum_probs=187.0
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
|+||||||+|+|+++|.+||||||||||+||.... .-+||||+|||++++|||++||
T Consensus 260 GvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~-----------------------~~~~PDRktgr~g~~eL~s~~P 316 (520)
T KOG0573|consen 260 GVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSK-----------------------EQNVPDRKTGRRGLEELQSLYP 316 (520)
T ss_pred CchHHHHHHHHHhhcCCCCceeEEEeeccCCCccc-----------------------ccCCccHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999994321 1159999999999999999999
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCcc----------------ccceeeeeeeccCchhhHhh
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEE----------------VVDFFANVNITAGGDKAVLM 144 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~----------------~~~~~a~~~~~~~g~~~~~~ 144 (708)
.|.||||+|||+++|....++.| ..||||++|.||++|+.. .|.+.|+|+++|.||||
T Consensus 317 ~R~~nlV~vnV~~~El~~~k~~I---~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s~a~V~l~GsGADE--- 390 (520)
T KOG0573|consen 317 KRSWNLVEVNVTYEELQKAKEHI---KHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRSYARVALLGSGADE--- 390 (520)
T ss_pred cceEEEEeccCCHHHHHHHHHHH---HHhhCcCccccccccceEEEEeeccccccccCccccccccEEEEecCChHH---
Confidence 99999999999999965555558 778899999999997521 34455678999999999
Q ss_pred hccCCchhhhh-------------hHHHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC---------c
Q psy18015 145 KTLDTYPLFCD-------------NVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP---------S 202 (708)
Q Consensus 145 ~~~~gy~~~~~-------------~~~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~---------~ 202 (708)
|||||+||+. +..++.||.+|||+|||||+..+|+|+|+|||| ..||+|.+++|. |
T Consensus 391 -llgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLd-e~vV~~~~~l~~~~k~~l~l~G 468 (520)
T KOG0573|consen 391 -LLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLD-ENVVKLSNALPVSVKMMLGLRG 468 (520)
T ss_pred -hhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchH-HHHHHHHHhcchhHHhhhcccc
Confidence 9999999982 233588999999999999999999999999999 899999988885 6
Q ss_pred hhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCC
Q psy18015 203 VGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGN 243 (708)
Q Consensus 203 ~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~ 243 (708)
|+|++||+++.++|++.++..|||||||||++|||++..+
T Consensus 469 -G~KlllRe~~~~lGl~~~s~~pKrAmQFGSr~AKm~~~g~ 508 (520)
T KOG0573|consen 469 -GEKLLLREAGRRLGLPSASTEPKRAMQFGSRMAKMEKKGD 508 (520)
T ss_pred -hhhHHHHHHHHHhCCCcccccchHHHHhhhhhhhcccCCC
Confidence 9999999999999999999999999999999999987653
No 10
>KOG0573|consensus
Probab=100.00 E-value=4.9e-56 Score=468.13 Aligned_cols=427 Identities=39% Similarity=0.607 Sum_probs=332.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEEEecCCCCCCCCCceecCCcEEEEEEEEecCchhhccccCCCCC
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGNVLLWNGDVYNFTSEDNKTIESTSE 323 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~l~~~g~~~~~QP~~~~~g~v~v~NGeIyN~~~el~~~l~~~s~ 323 (708)
..+-.+|...+..||||.++....+......++.++++|++| ....||++..++.++.|||||||-. + ..+.
T Consensus 17 ~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d~~~vfl~NGeIyn~~---~----s~~~ 88 (520)
T KOG0573|consen 17 ELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVEDDRYVFLFNGEIYNGE---K----SDTL 88 (520)
T ss_pred cchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecccceEEEecceeccCC---C----cccc
Confidence 355678888999999999876654442334467788999998 3468998876667899999999964 1 3456
Q ss_pred ChHHHHHHHHHH----hhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEE--EccCcccccccee
Q psy18015 324 SDSLQVLQRFAS----HGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILV--TSVAHKSIPRIEE 397 (708)
Q Consensus 324 sDtevl~~~~~~----~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~f--aSe~~a~~~~l~~ 397 (708)
.||..|++.+.. .+|.+.++.+.|.|+|++||...++||++||++|+++|.|...+..+.+ +|.-.+ .+.|.+
T Consensus 89 ~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~~-~~~i~e 167 (520)
T KOG0573|consen 89 FDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGTS-GKLIYE 167 (520)
T ss_pred chHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccccC-Cccccc
Confidence 699999998875 3577889999999999999999999999999999999999998854444 433222 233556
Q ss_pred cCCCceEEecCCCCcceecccCCCCCCCCCCCCce-ecCCceEEEEecCCceeEecccCCCCCChhHHHHHHHHHHHHHH
Q psy18015 398 IPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEE-VVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSV 476 (708)
Q Consensus 398 ~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~-~LppG~~l~~~~~~~~~~~y~~~~~~~~~e~~~~~l~~~L~~AV 476 (708)
+|+. |..+.... ++|.+...-...... .++|++.+.- .........+.+..+.+.+++|+
T Consensus 168 ~~~~--F~~~~~d~------~~w~y~s~~le~~~~~s~~p~~~i~~-----------~~l~~~~~~~~v~~l~~~l~ds~ 228 (520)
T KOG0573|consen 168 VPPV--FRNKLTDR------VPWPYLSTKLENSLGPSLPPLCDISE-----------IFLNQSHRSEVVSGLHTGLRDSL 228 (520)
T ss_pred cCch--hhhccCCc------cccccccceecccCCCcCCCccchHH-----------HHhhhHHHHHHHhhhHHHHHHHH
Confidence 7763 44444431 344432211111010 1333221110 00011234567888999999999
Q ss_pred HHHHhcCCCCCccccC----CCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCC---CCCCCchhHHHHH
Q psy18015 477 EKRVRTQPSHCVQCVE----PCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKN---QNYNVPDRLTGLS 549 (708)
Q Consensus 477 ~~rl~sdv~~~~~~~~----~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~---~~~d~~D~~~A~~ 549 (708)
+.|.....| ..|-+ -..+.+|+++||||+||++||.+++...|.+++|+++||+|++. .+-+.|||..+++
T Consensus 229 k~rvl~i~~--rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktgr~ 306 (520)
T KOG0573|consen 229 KDRVLVIPP--RLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTGRR 306 (520)
T ss_pred hhhhhccCh--hHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHHHH
Confidence 999876543 23322 12557999999999999999999999999889999999999742 2234699999999
Q ss_pred HHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHhcccc--CCCCCCCCCCCCceE
Q psy18015 550 SLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRL--GSCDYTSPRSEERRV 627 (708)
Q Consensus 550 va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~--~~~~~~~~r~~~~kV 627 (708)
.+++|.+.+|.+.|++++++|+.+++..+ ++.|.++.+|.+++||++++.++||++++.|.- ..+.|++ ..+|
T Consensus 307 g~~eL~s~~P~R~~nlV~vnV~~~El~~~-k~~I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s----~a~V 381 (520)
T KOG0573|consen 307 GLEELQSLYPKRSWNLVEVNVTYEELQKA-KEHIKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRS----YARV 381 (520)
T ss_pred HHHHHHHhCCcceEEEEeccCCHHHHHHH-HHHHHHhhCcCccccccccceEEEEeeccccccccCcccccc----ccEE
Confidence 99999999999999999999999999888 555999999999999999999999999977622 2334443 4899
Q ss_pred EEeccccccccCCchhhHhHHhcCCCChHHHHHHHHHHHHHhhhccccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 628 LLLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 628 vLsG~GaDElFgGY~r~~~~~~~~~~~~~~L~~el~~dl~~l~~~~L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
+|+|.||||+||||.||+..|.+.+ .+++.+|+.+|+.++..+||.||||+...+|+|+|+||||..||+|..++|++
T Consensus 382 ~l~GsGADEllgGY~rhr~rf~~~~--~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~~~ 459 (520)
T KOG0573|consen 382 ALLGSGADELLGGYHRHRTRFEKED--LEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALPVS 459 (520)
T ss_pred EEecCChHHhhccHHHHHhhhccCC--cHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhcchh
Confidence 9999999999999999998887655 67899999999999999999999999999999999999999999999999975
No 11
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.6e-35 Score=302.30 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=169.5
Q ss_pred CCHHHHHHHHHhccCCCCCCCCcEEecCCcceeeEeeEEE-ecCCCCCCCCCceecCCc-EEEEEEEEecCchhhccccC
Q psy18015 242 GNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASVR-WTQGVTISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE 319 (708)
Q Consensus 242 ~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g~~l-~~~g~~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~ 319 (708)
...+.+..|+.+|+|||||+.|++..+. +++||++ ++.|...+.||+.+.++. +++|||+|||+. +|+.++.
T Consensus 14 ~~~~~~~~~~~~l~hRGpd~~~~~~~~~-----~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~~-~L~~~l~ 87 (220)
T cd00712 14 VDRATLERMLDALAHRGPDGSGIWIDEG-----VALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYR-ELRAELE 87 (220)
T ss_pred chHHHHHHHHHHHhccCCCCCCEEEECC-----EEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCHH-HHHHHHH
Confidence 3467899999999999999999987654 5678864 577766789999988765 689999999998 8876542
Q ss_pred -----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcccccc
Q psy18015 320 -----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKSIPR 394 (708)
Q Consensus 320 -----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a~~~~ 394 (708)
|.+.||+|+|+++|++|| .+++++|+|+|||++||+.+++++++||++|.+||||+..++.++||||+++
T Consensus 88 ~~~~~~~~~sD~e~l~~~~~~~g-~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~~~~~~~aSe~~~---- 162 (220)
T cd00712 88 ALGHRFRTHSDTEVILHLYEEWG-EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRDGGGLAFASELKA---- 162 (220)
T ss_pred hcCCcCCCCChHHHHHHHHHHHh-HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEECCEEEEEcchHH----
Confidence 689999999999999999 8999999999999999998899999999999999999999999999999998
Q ss_pred ceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEecCCceeEeccc
Q psy18015 395 IEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKT 454 (708)
Q Consensus 395 l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~~~~~~~~y~~ 454 (708)
+..++... ..+|....+ +++.+++.+.+.|++++|++|||||++.++.++.+.++||+
T Consensus 163 l~~~~~~~-~~~d~~~l~-~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 163 LLALPGVP-RELDEAALA-EYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred HHhcCCCC-CCcCHHHHH-HHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 65554311 234444322 56677888889999999999999999999987778888984
No 12
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=1.7e-32 Score=287.59 Aligned_cols=199 Identities=32% Similarity=0.489 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHH
Q psy18015 469 TKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGL 548 (708)
Q Consensus 469 ~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~ 548 (708)
+++|.+||++|+++++ |||++||||+|||+||+++++... .++.+||++|+.. ..+|..+|+
T Consensus 1 r~~l~~av~~~~~~~~-------------~v~~~LSGGlDSs~va~~~~~~~~--~~~~~~~~~~~~~---~~~e~~~a~ 62 (269)
T cd01991 1 RELLEDAVRRRLRSDV-------------PVGVLLSGGLDSSLVAALAARLLP--EPVKTFSIGFGFE---GSDEREYAR 62 (269)
T ss_pred ChHHHHHHHHHhccCC-------------ceEEeecccHHHHHHHHHHHHhhC--CCCceEEEeeCCC---CCChHHHHH
Confidence 3689999999999986 899999999999999999988753 3589999999753 235789999
Q ss_pred HHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEE
Q psy18015 549 SSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVL 628 (708)
Q Consensus 549 ~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVv 628 (708)
++|++++. +|+.+.++.+++.+.+...++..+.|. ..+...++|++++.++ +.+++|+
T Consensus 63 ~~a~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~l~~~a~-----------~~~~~v~ 120 (269)
T cd01991 63 RVAEHLGT-------EHHEVEFTPADLLAALPDVIWELDEPF----ADSSAIPLYLLSRLAR-----------KHGIKVV 120 (269)
T ss_pred HHHHHhCC-------cceEEEcCHHHHHHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHH-----------HhCCEEE
Confidence 99999997 789999999999888777777777665 4566678899999883 5678999
Q ss_pred EeccccccccCCchhhHhHHhcCC--C-------------ChHHHHHHHHHHHHH--------------------hhhcc
Q psy18015 629 LLGMGADELLGGYTRHRTILRHCS--N-------------DWSALRAQLEHEVLN--------------------ISRRN 673 (708)
Q Consensus 629 LsG~GaDElFgGY~r~~~~~~~~~--~-------------~~~~L~~el~~dl~~--------------------l~~~~ 673 (708)
|||+||||+||||.+|........ . ....+.+.+..++.. +....
T Consensus 121 l~G~g~Delf~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (269)
T cd01991 121 LSGEGADELFGGYPRYRRAPLARRRRRRLLGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDL 200 (269)
T ss_pred EecCCccccccChHHHHHHHHHhhccccCcchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccch
Confidence 999999999999998875432100 0 001111222222221 22344
Q ss_pred ccchhHHHHhcCceeeccCCCHHHHHHHhcCCCC
Q psy18015 674 LGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSW 707 (708)
Q Consensus 674 L~r~DR~sma~glE~R~PFLD~~lVe~a~slP~~ 707 (708)
|.+.||++|+||+|+|+||||++||||+++||++
T Consensus 201 l~~~dr~~m~~gvE~R~PflD~~lve~~~~lP~~ 234 (269)
T cd01991 201 LLRDDRASMAHGLEVRVPFLDHRLVEFALSLPPE 234 (269)
T ss_pred HHHhhHHHHHhcccccCCCCCHHHHHHHHcCCHH
Confidence 7899999999999999999999999999999975
No 13
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=99.97 E-value=1.1e-30 Score=270.26 Aligned_cols=203 Identities=33% Similarity=0.446 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHH
Q psy18015 467 ELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLT 546 (708)
Q Consensus 467 ~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~ 546 (708)
+|+++|.+||++|+.++. ++|++||||+||++|++++++.. +.++.+||++|++.. ..|..+
T Consensus 1 ~~r~~l~~av~~rl~~~~-------------~i~~~LSGGlDSs~i~~~~~~~~--~~~~~~~t~~~~~~~---~~e~~~ 62 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDK-------------PIGILLSGGLDSSAIAALAARQG--GPPIKTFTIGFEDDD---YDEREY 62 (255)
T ss_dssp HHHHHHHHHHHHHCGCTS-------------EEEEE--SSHHHHHHHHHHHHTC--CSEEEEEEEECSSCC-----HHHH
T ss_pred CHHHHHHHHHHHHHhcCC-------------CEEEECCCChhHHHHHHHHHHhh--CCceeEEEEEcCCCc---chhHHH
Confidence 589999999999998864 99999999999999999999833 578999999998732 238999
Q ss_pred HHHHHHHhhhcCCCCccceEEEecChhHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCce
Q psy18015 547 GLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERR 626 (708)
Q Consensus 547 A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~k 626 (708)
|+++|++++. +|+.+.++.+++.+.+++.++.++.|... ..+...+.|.+++.+ ++.|++
T Consensus 63 a~~va~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~a-----------~~~~~~ 122 (255)
T PF00733_consen 63 ARKVARHLGL-------EHHEIELDPEDLLDNLEDIIWRLDGPSPL--DDPNSLPLYLLARLA-----------RENGIR 122 (255)
T ss_dssp HHHHHHHHT--------EEEEEEE-HHHHHHHHHHHHHHHT---HH--HHHHHHHHHHHHHHH-----------CHTTBS
T ss_pred HHHHhccccc-------ccceeeechhhHHHhHHHHHHHHhCCccc--ccccccHHHHHHHhh-----------ccccee
Confidence 9999999998 79999999999999888889999888631 245667788888887 257899
Q ss_pred EEEeccccccccCCchhhHhHHhcCCCChHHHH----H--------------------HHHHHHHHhhhccccchhHHHH
Q psy18015 627 VLLLGMGADELLGGYTRHRTILRHCSNDWSALR----A--------------------QLEHEVLNISRRNLGRDNRVVC 682 (708)
Q Consensus 627 VvLsG~GaDElFgGY~r~~~~~~~~~~~~~~L~----~--------------------el~~dl~~l~~~~L~r~DR~sm 682 (708)
|+|||+||||+||||++|...+..... +.... . +...+..++..+.+.+.++++|
T Consensus 123 ~~ltG~GgDelf~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 201 (255)
T PF00733_consen 123 VLLTGQGGDELFGGYPRYRPAYLRPLL-LGRLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASM 201 (255)
T ss_dssp EEE--TTHHHHHTTTT-TTGGGCGHCC-HHHHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHH
T ss_pred EEEeccccccccccchHhHHHHhhhhh-hhhhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhh
Confidence 999999999999999887654432210 11111 1 1122344566778899999999
Q ss_pred hcCceeeccCCCHHHHHHHhcCCCCC
Q psy18015 683 DHGRQSRTPFLDEPVVAFLLSLPSWQ 708 (708)
Q Consensus 683 a~glE~R~PFLD~~lVe~a~slP~~~ 708 (708)
.+|+|+|.||||.+||+|+++||.++
T Consensus 202 ~~g~~~~~PflD~~lv~~~~~lP~~~ 227 (255)
T PF00733_consen 202 AYGIEVRSPFLDRRLVEFCLSLPPEQ 227 (255)
T ss_dssp CTT-EEE-GGGSHHHHHHHHCB-GGG
T ss_pred hcccccCceecCHHHHHHHHhCCHHH
Confidence 99999999999999999999999864
No 14
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.97 E-value=6.7e-30 Score=252.67 Aligned_cols=140 Identities=31% Similarity=0.551 Sum_probs=119.0
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCcceeeEee-EEEecCCCCCCCCCceecCCc-EEEEEEEEecCchhhccccCCC
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLA-SVRWTQGVTISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIEST 321 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~~~~~~~g-~~l~~~g~~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~~~ 321 (708)
...+.+|+.+|+|||||+.|++........ +.++ ++|++.|...+.||+.+.++. +++|||||||+. +|+.
T Consensus 18 ~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~-~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NGeIyN~~-~l~~----- 90 (181)
T cd03766 18 SLLSEELLPNLRNRGPDYLSTRQLSVTNWT-LLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNGELYNID-GVED----- 90 (181)
T ss_pred hhhHHHHHHHHHhcCCCccCCEEeeccccE-EEEEeeEEEecCCCCCCCCCEeCCCCEEEEECCEEECcc-cccC-----
Confidence 367899999999999999999875431111 3444 468999976789999987755 799999999998 7764
Q ss_pred CCChHHHHHHHHHHhh-----HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe--CCEEEEEccCcc
Q psy18015 322 SESDSLQVLQRFASHG-----VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT--PTSILVTSVAHK 390 (708)
Q Consensus 322 s~sDtevl~~~~~~~g-----~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~--~~~~~faSe~~a 390 (708)
+.||||+|+++|++++ +.+++++|+|+|||++||+.+++++++|||+|+|||||+.. ++.++|||+...
T Consensus 91 s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~ 166 (181)
T cd03766 91 EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGS 166 (181)
T ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCC
Confidence 7899999999999976 35899999999999999998899999999999999999998 788999998653
No 15
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.96 E-value=3.2e-29 Score=249.55 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=119.4
Q ss_pred CCCceecCCcEEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEE
Q psy18015 290 PQPLEDVDGNVLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFG 364 (708)
Q Consensus 290 ~QP~~~~~g~v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~ 364 (708)
.|++.+ +..++||||||||+. ||+.+|. |++.||+|+|+++|++|| .+++++|+|||||++||++ ++|+++
T Consensus 44 ~~~~~~-~~~~iv~NGEIYN~~-eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-~~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 44 VQVARS-ETGTAYLIGELYNRD-ELRSLLGAGEGRSAVLGDAELLLLLLTRLG-LHAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred eeEeeC-CCEEEEEEEEEeCHH-HHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 455432 224799999999999 8887663 799999999999999999 7899999999999999998 999999
Q ss_pred eCCCCCcceEEEEeCCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEec
Q psy18015 365 KDPIGRHSLLLKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITA 444 (708)
Q Consensus 365 RD~~G~kPLyy~~~~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~~ 444 (708)
|||+|+|||||+.. +.++||||+++ |+.+|.. ...++. .+.+.+.|+|++|++|||||++.++.
T Consensus 120 RDr~GikPLYy~~~-~~l~FASEika----Lla~~~~---~~~~d~--------~~~~~~~T~~~gI~rL~PG~~l~~~~ 183 (199)
T cd01909 120 TDHAGSVPVYLVQA-GEVWATTELKL----LAAHEGP---KAFPFK--------SAGADTVSGLTGVQRVPPGTVNVLTF 183 (199)
T ss_pred ECCCCCcCeEEEEC-CeEEEEeCHHH----HhhCcCC---CcccCc--------ccCCCCCChhcCceEECCCcEEEEee
Confidence 99999999999988 99999999998 6655531 112221 13456689999999999999998875
Q ss_pred CC-----ceeEecccC
Q psy18015 445 GG-----DKAVLMKTL 455 (708)
Q Consensus 445 ~~-----~~~~~y~~~ 455 (708)
++ ...++||.|
T Consensus 184 ~g~~~~~~~~~~yW~p 199 (199)
T cd01909 184 DGGSYGTAESRRTWTP 199 (199)
T ss_pred CCcccceEEEEEeecC
Confidence 43 456788874
No 16
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=268.24 Aligned_cols=209 Identities=19% Similarity=0.213 Sum_probs=161.7
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++.. . ......+..++.+|+|||||++|+++.++..+
T Consensus 18 ~~~mCGI~Gi~~---------~-------~~~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l 81 (479)
T PRK09123 18 LREECGVFGILG---------H-------PDAAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVI 81 (479)
T ss_pred ccccCeEEEEEc---------C-------cchHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhh
Confidence 556999999762 2 12456788999999999999999987543210
Q ss_pred ----eeeEeeEEEe-cCCC--CCCCCCceec--CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh-
Q psy18015 273 ----TCTFLASVRW-TQGV--TISPQPLEDV--DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH- 336 (708)
Q Consensus 273 ----~~~~~g~~l~-~~g~--~~~~QP~~~~--~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~- 336 (708)
+.+++||+|+ |+|. ..++|||.+. +|. +++|||+|||+. +||.+|. |.+.||||+|++++.++
T Consensus 82 ~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~-eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~ 160 (479)
T PRK09123 82 ARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNAL-TLRRELIRRGAIFQSTSDTEVILHLIARSR 160 (479)
T ss_pred hccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHH-HHHHHHHhCCCcCCCCCHHHHHHHHHHHHc
Confidence 1258899876 8885 3789999874 565 699999999998 8887663 89999999999999863
Q ss_pred ------hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCccc----cccceecCCCceEEe
Q psy18015 337 ------GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKS----IPRIEEIPNTHIYSV 406 (708)
Q Consensus 337 ------g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a~----~~~l~~~p~~~~~~~ 406 (708)
++.+++++|+|+|||++|+. ++++++||++|+|||||+..++.++||||.+++ ...+.+++|+.++.+
T Consensus 161 ~~~~~eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i 238 (479)
T PRK09123 161 KASFLDRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGELDGSPILASETCALDIIGAEFVRDVEPGELVVI 238 (479)
T ss_pred cCCHHHHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEECCEEEEEECchHHhccCCceEEEECCCeEEEE
Confidence 35678999999999999985 689999999999999999999999999999983 234556778877777
Q ss_pred cCCC-CcceecccCCCCCCCCCCCCceecCCceEE
Q psy18015 407 DITC-PDFQLGNYHPKEPSTDPTPPEEVVDFFANV 440 (708)
Q Consensus 407 d~~~-~al~~~~~~~~~~~~T~~~~I~~LppG~~l 440 (708)
+.+. .. .+..+...+...+.|+.|+...|++.+
T Consensus 239 ~~~g~~~-~~~~~~~~~~~~C~FE~VYfarPdS~~ 272 (479)
T PRK09123 239 DEDGSIE-SIKPFPPQPARFCIFEYVYFARPDSVV 272 (479)
T ss_pred eCCCcEE-EEEecCCCCCCCChhheEEecCCCceE
Confidence 7665 22 122223233345888888888887764
No 17
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=4.4e-27 Score=262.27 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=129.8
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc----------------------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA---------------------- 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~---------------------- 272 (708)
||||.++... ......+..|+.+|+|||||++|++..++..+
T Consensus 1 MCGI~G~~~~----------------~~~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~ 64 (445)
T PRK08525 1 MCAVVGVINS----------------KNAAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLK 64 (445)
T ss_pred CceEEEEEcC----------------ccHHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccC
Confidence 8999987631 12346677999999999999999987543210
Q ss_pred eeeEeeEEEe-cCCCC--CCCCCcee--cCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh----
Q psy18015 273 TCTFLASVRW-TQGVT--ISPQPLED--VDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG---- 337 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~~--~~~QP~~~--~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g---- 337 (708)
+.+++||+|| |+|.. .++|||.+ ++|. ++||||+||||. +||.+|. |.|+||||+|+|+|.+++
T Consensus 65 g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~-eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~ 143 (445)
T PRK08525 65 GEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKK-EVRSRLIQDGAIFQTNMDTENLIHLIARSKKESL 143 (445)
T ss_pred CcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHH-HHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCH
Confidence 1368999876 88862 78999997 4566 699999999999 8887653 899999999999998753
Q ss_pred ---HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe-CCEEEEEccCcc
Q psy18015 338 ---VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 338 ---~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~-~~~~~faSe~~a 390 (708)
+.+++++|+|+|||+++++ ++++++||++|+|||||+.. ++.++||||.++
T Consensus 144 ~ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~a 198 (445)
T PRK08525 144 KDRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCA 198 (445)
T ss_pred HHHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHH
Confidence 4678999999999999985 68999999999999999985 578999999988
No 18
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.2e-26 Score=258.98 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=131.8
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++. |. ......+..+|.+|+|||||++|+++.++..+
T Consensus 16 ~~emCGI~G~~---------~~-------~~~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~ 79 (474)
T PRK06388 16 PSEDCAVVGFK---------GG-------INAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDP 79 (474)
T ss_pred CCcCCeEEEEE---------CC-------cchHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhc
Confidence 44599999976 32 13457789999999999999999988554211
Q ss_pred --eeeEeeEEEe-cCCC--CCCCCCcee--cCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHH----H
Q psy18015 273 --TCTFLASVRW-TQGV--TISPQPLED--VDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFA----S 335 (708)
Q Consensus 273 --~~~~~g~~l~-~~g~--~~~~QP~~~--~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~----~ 335 (708)
+.+++||+|| |+|. ..++|||.. .+|. +++|||+|||+. +||.+|. |.|+||||||+|+|. +
T Consensus 80 l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~-eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~ 158 (474)
T PRK06388 80 IKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNAD-ELREEMKKEGYIFQSDSDTEVMLAELSRNISK 158 (474)
T ss_pred CCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHH-HHHHHHHHCCCcccCCCHHHHHHHHHHHHHhc
Confidence 1368999876 8886 378999973 3466 599999999999 8887663 899999999999994 3
Q ss_pred hh----HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 336 HG----VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 336 ~g----~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
++ +.+++++|+|+|||++++. ++++++||++|+|||||+..++.++||||.++
T Consensus 159 ~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~~~~~~~ASE~~A 215 (474)
T PRK06388 159 YGLKEGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKNFDGYIIASESCA 215 (474)
T ss_pred CCHHHHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEecCCEEEEEEChHH
Confidence 34 4678999999999999974 78999999999999999999999999999988
No 19
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.2e-26 Score=259.39 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=131.8
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++... ......+..+|.+|+|||||++|+++.++..+
T Consensus 8 ~~emCGI~Gi~~~----------------~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l 71 (484)
T PRK07272 8 LNEECGVFGIWGH----------------PDAAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADL 71 (484)
T ss_pred ccccCeEEEEECC----------------ccHHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhH
Confidence 4569999997631 12456788999999999999999988543210
Q ss_pred ----eeeEeeEEEe-cCCCC--CCCCCcee--cCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh-
Q psy18015 273 ----TCTFLASVRW-TQGVT--ISPQPLED--VDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH- 336 (708)
Q Consensus 273 ----~~~~~g~~l~-~~g~~--~~~QP~~~--~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~- 336 (708)
+.+++||+|| |+|.. .++|||.. .+|. +++|||+|||+. +||.+|. |.|.||||+|+|++.++
T Consensus 72 ~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~-eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~ 150 (484)
T PRK07272 72 DKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAV-SLRKELEKQGAIFHSSSDTEILMHLIRRSH 150 (484)
T ss_pred hcCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHc
Confidence 2368999886 88863 68999986 3566 599999999998 8887663 89999999999999873
Q ss_pred ------hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe-CCEEEEEccCcc
Q psy18015 337 ------GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 337 ------g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~-~~~~~faSe~~a 390 (708)
++.+++++|+|+|||++++. ++++++|||+|+|||||+.. ++.++||||.++
T Consensus 151 ~~~~~eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~A 209 (484)
T PRK07272 151 NPTFMGKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCA 209 (484)
T ss_pred CCCHHHHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHH
Confidence 45788999999999999985 68999999999999999986 567999999988
No 20
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.1e-26 Score=258.93 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=131.8
Q ss_pred HhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCc---------------------
Q psy18015 213 AWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDC--------------------- 271 (708)
Q Consensus 213 a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~--------------------- 271 (708)
..||||.++.. . ......+..++.+|+|||||++|++..++..
T Consensus 9 ~emCGI~Gi~~---------~-------~~~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~ 72 (475)
T PRK07631 9 NEECGVFGIWG---------H-------EEAAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDA 72 (475)
T ss_pred ccCCcEEEEEC---------C-------chhHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhc
Confidence 46999999763 1 1234678899999999999999998654321
Q ss_pred -ceeeEeeEEEe-cCCC--CCCCCCce--ecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh--
Q psy18015 272 -ATCTFLASVRW-TQGV--TISPQPLE--DVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG-- 337 (708)
Q Consensus 272 -~~~~~~g~~l~-~~g~--~~~~QP~~--~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g-- 337 (708)
-+.+++||+|| |+|. ..++|||. +.+|. +++|||+|||+. +||.+|. |.|.||||+|+|+|.+++
T Consensus 73 l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~-eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~ 151 (475)
T PRK07631 73 LKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNAT-QLKLQLENQGSIFQTTSDTEVLAHLIKRSGAP 151 (475)
T ss_pred cCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHH-HHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCC
Confidence 02368999886 8886 36899996 45566 599999999999 8887653 899999999999998853
Q ss_pred -----HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 338 -----VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 338 -----~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
+.+++++|+|+|||++++. ++++++|||+|+|||||+..++.++||||.++
T Consensus 152 ~~~eai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~~~~~~~ASE~~A 207 (475)
T PRK07631 152 TLKEQIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRLGDAYVVASETCA 207 (475)
T ss_pred CHHHHHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEeCCEEEEEeChHH
Confidence 4578999999999999995 67999999999999999999999999999988
No 21
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=4.1e-26 Score=255.62 Aligned_cols=161 Identities=21% Similarity=0.212 Sum_probs=130.5
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++.. + +......+..+|.+|+|||||++|+++.++..+
T Consensus 30 ~~emCGI~Gi~~---------~------~~~~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~ 94 (500)
T PRK07349 30 PEEACGVFGVYA---------P------GEEVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILE 94 (500)
T ss_pred cccCCeEEEEEC---------C------CcCHHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhh
Confidence 556999999763 1 012346778999999999999999987544210
Q ss_pred ---eeeEeeEEEe-cCCC--CCCCCCceec--CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH---
Q psy18015 273 ---TCTFLASVRW-TQGV--TISPQPLEDV--DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS--- 335 (708)
Q Consensus 273 ---~~~~~g~~l~-~~g~--~~~~QP~~~~--~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~--- 335 (708)
+.+++||+|+ |+|. ..++|||... .|. +++|||+|||+. +||.+|. |.|.||||+|+|+|.+
T Consensus 95 ~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~-eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~ 173 (500)
T PRK07349 95 ELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTV-ELREELLARGCELTTTTDSEMIAFAIAQAVD 173 (500)
T ss_pred cCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHH-HHHHHHHhCCCcCCCCCHHHHHHHHHHHHHh
Confidence 1358999876 8886 3689999874 365 699999999999 8887653 8999999999999965
Q ss_pred ------hhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe----CCEEEEEccCcc
Q psy18015 336 ------HGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT----PTSILVTSVAHK 390 (708)
Q Consensus 336 ------~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~----~~~~~faSe~~a 390 (708)
.++.+++++|+|+|||++++. ++++++||++|+|||||+.. ++.++||||.++
T Consensus 174 ~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~A 236 (500)
T PRK07349 174 AGKDWLEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCA 236 (500)
T ss_pred cCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccch
Confidence 235678999999999999874 68999999999999999986 358999999988
No 22
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=1e-25 Score=249.75 Aligned_cols=156 Identities=21% Similarity=0.209 Sum_probs=126.5
Q ss_pred hhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCC--------------------c-c
Q psy18015 214 WKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISED--------------------C-A 272 (708)
Q Consensus 214 ~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~--------------------~-~ 272 (708)
.||||.++. |. .....+..+|.+|+|||||++|+++.++. . -
T Consensus 3 e~CGI~G~~---------~~--------~~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~ 65 (442)
T PRK08341 3 EKCGIFAAY---------SE--------NAPKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLK 65 (442)
T ss_pred cccEEEEEE---------CC--------CcHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCC
Confidence 489999875 21 13577899999999999999999775431 0 0
Q ss_pred eeeEeeEEEe-cCCCCCCCCCceec--CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH--------
Q psy18015 273 TCTFLASVRW-TQGVTISPQPLEDV--DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS-------- 335 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~~~~~QP~~~~--~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~-------- 335 (708)
+.+++||+|+ |+|...+.|||... +|. +++|||+|||+. +||.+|. |+|+||||+|+|++.+
T Consensus 66 g~~~IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~-eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~ 144 (442)
T PRK08341 66 SNLAIGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFL-PLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDE 144 (442)
T ss_pred CCEEEEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHH-HHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCH
Confidence 2368999876 99977889999764 355 599999999999 8887663 8999999999887632
Q ss_pred -hhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 336 -HGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 336 -~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
.++.+++++|+|+|||++++. ++++++||++|+|||||+.. +.++||||.++
T Consensus 145 ~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~~~~ASE~~A 197 (442)
T PRK08341 145 FEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DGHYFASEDSA 197 (442)
T ss_pred HHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CEEEEEeCcHH
Confidence 234567899999999999984 78999999999999999984 56899999887
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=7.3e-26 Score=254.17 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=130.8
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++.. .. ....+.+..+|.+|+|||||++|+++.++..+
T Consensus 20 ~~emCGI~Gi~~---------~~------~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~ 84 (510)
T PRK07847 20 PQDECGVFGVWA---------PG------EEVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLA 84 (510)
T ss_pred ccccCeEEEEEC---------CC------cCHHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhh
Confidence 446999999763 10 12346778999999999999999987554211
Q ss_pred ---eeeEeeEEEe-cCCCC--CCCCCceec---CCc-EEEEEEEEecCchhhcccc----------CCCCCChHHHHHHH
Q psy18015 273 ---TCTFLASVRW-TQGVT--ISPQPLEDV---DGN-VLLWNGDVYNFTSEDNKTI----------ESTSESDSLQVLQR 332 (708)
Q Consensus 273 ---~~~~~g~~l~-~~g~~--~~~QP~~~~---~g~-v~v~NGeIyN~~~el~~~l----------~~~s~sDtevl~~~ 332 (708)
+.+++||+|+ |+|.. .++|||... .|. +++|||+|||+. +||.+| .|.|.||||+|+++
T Consensus 85 ~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~-eLr~~L~~~G~~~~~~~f~s~sDSEVI~~L 163 (510)
T PRK07847 85 SLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTA-ELAARARDRGLIRGRDPAGATTDTDLVTAL 163 (510)
T ss_pred hcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHH-HHHHHHHhcCCccccCCCCCCCHHHHHHHH
Confidence 1358999876 88863 689999863 565 699999999998 887654 27899999999999
Q ss_pred HHHhh--------HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 333 FASHG--------VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 333 ~~~~g--------~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
+.+++ +..++++++|+|||+++|. ++++++||++|+|||||+..++.++||||.++
T Consensus 164 i~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~~~~~~vASE~~A 227 (510)
T PRK07847 164 LAHGAADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRLERGWVVASETAA 227 (510)
T ss_pred HHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEECCeEEEEechHH
Confidence 98753 3468999999999999995 68999999999999999999999999999987
No 24
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.94 E-value=5.1e-26 Score=231.39 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=120.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCc----------------------ceeeEeeEEEe-cCCC--CCCCCCceecCC
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDC----------------------ATCTFLASVRW-TQGV--TISPQPLEDVDG 298 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~~~~~~g~~l~-~~g~--~~~~QP~~~~~g 298 (708)
.+.+..|+.+|+|||||+.|++..++.. ...+++||+|+ +.|. ..+.|||...++
T Consensus 13 ~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qPf~~~~~ 92 (215)
T cd00714 13 VDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGEPTDVNAHPHRSCDG 92 (215)
T ss_pred HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCCCCccCCCCCCcCCC
Confidence 4678899999999999999998754310 02367999865 8885 368999988776
Q ss_pred c-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh---------HHHhhhhccCCeEEEEEECCC-CEEE
Q psy18015 299 N-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG---------VLKTLKHIQGPYSFIFLDKKN-KQLW 362 (708)
Q Consensus 299 ~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g---------~~~~l~~L~G~fA~~i~d~~~-~~l~ 362 (708)
. +++|||+|||+. +|+.+|. |.+.||||+|+++|.+++ +.+++++|+|+|||++||+.. ++++
T Consensus 93 ~~~~vhNG~I~N~~-~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~ 171 (215)
T cd00714 93 EIAVVHNGIIENYA-ELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIV 171 (215)
T ss_pred CEEEEEeEEEcCHH-HHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEEE
Confidence 6 699999999998 8877652 789999999999998865 237899999999999999876 4999
Q ss_pred EEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 363 FGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 363 l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
++||. |||||+..++.++||||.++
T Consensus 172 ~~RD~---~PL~~~~~~~~~~~aSE~~a 196 (215)
T cd00714 172 AARNG---SPLVIGIGDGENFVASDAPA 196 (215)
T ss_pred EEECC---CCcEEEEcCCeEEEEECHHH
Confidence 99994 99999999999999999998
No 25
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.5e-25 Score=250.29 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=131.2
Q ss_pred HhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc--------------------
Q psy18015 213 AWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA-------------------- 272 (708)
Q Consensus 213 a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~-------------------- 272 (708)
..||||.++.. . ......+..|+.+|+|||||++|+++.++..+
T Consensus 9 ~~mCGI~Gi~~---------~-------~~~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~ 72 (471)
T PRK06781 9 NEECGVFGIWG---------H-------ENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEG 72 (471)
T ss_pred cccCeEEEEEc---------C-------ccHHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhc
Confidence 45999999763 1 12346777999999999999999986543211
Q ss_pred --eeeEeeEEEe-cCCCC--CCCCCcee--cCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh---
Q psy18015 273 --TCTFLASVRW-TQGVT--ISPQPLED--VDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH--- 336 (708)
Q Consensus 273 --~~~~~g~~l~-~~g~~--~~~QP~~~--~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~--- 336 (708)
+.+++||+|| |+|.. .++|||.. .+|. +++|||+|||+. +||.+|. |.|.||||+|+++|.++
T Consensus 73 l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~-eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~ 151 (471)
T PRK06781 73 LNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAK-MLRRELEAEGSIFQTSSDTEVLLHLIKRSTKD 151 (471)
T ss_pred CCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHH-HHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCC
Confidence 2357899987 88863 78999964 3455 699999999998 8887653 89999999999999763
Q ss_pred ----hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 337 ----GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 337 ----g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
++..++++|+|+|||++++. ++++++||++|+|||||+..++.++||||.++
T Consensus 152 ~~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~~~~~~~ASE~~A 207 (471)
T PRK06781 152 SLIESVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKMGDAYVVASETCA 207 (471)
T ss_pred CHHHHHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEECCEEEEEECchH
Confidence 35778999999999999994 68999999999999999999999999999988
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.92 E-value=1.2e-24 Score=226.84 Aligned_cols=144 Identities=26% Similarity=0.308 Sum_probs=120.2
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCcc----------------------eeeEeeEEEe-cCCC--CCCCCCceec--
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDCA----------------------TCTFLASVRW-TQGV--TISPQPLEDV-- 296 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~~----------------------~~~~~g~~l~-~~g~--~~~~QP~~~~-- 296 (708)
.+.+..|+.+|+|||||+.|++..++..+ ..+++||+|+ +.|. ..+.|||...
T Consensus 13 ~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~ 92 (252)
T cd00715 13 ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSP 92 (252)
T ss_pred HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecC
Confidence 46788999999999999999987543210 1368999876 7775 2689999863
Q ss_pred CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh--------HHHhhhhccCCeEEEEEECCCCEEE
Q psy18015 297 DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG--------VLKTLKHIQGPYSFIFLDKKNKQLW 362 (708)
Q Consensus 297 ~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g--------~~~~l~~L~G~fA~~i~d~~~~~l~ 362 (708)
++. +++|||+|||+. +|+.+|. +.+.||+|+|++++.+++ +.++++.|+|+|++++||. ++++
T Consensus 93 ~~~~~~~hNG~I~n~~-~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~ 169 (252)
T cd00715 93 LGGIALAHNGNLVNAK-ELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLI 169 (252)
T ss_pred CCcEEEEEEEEECCHH-HHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEE
Confidence 344 699999999998 8876542 688999999999998865 2368999999999999997 8999
Q ss_pred EEeCCCCCcceEEEEeC-CEEEEEccCcc
Q psy18015 363 FGKDPIGRHSLLLKCTP-TSILVTSVAHK 390 (708)
Q Consensus 363 l~RD~~G~kPLyy~~~~-~~~~faSe~~a 390 (708)
++||++|++||||+..+ +.++||||.++
T Consensus 170 ~~RD~~G~~PL~~~~~~~~~~~vASE~~a 198 (252)
T cd00715 170 AVRDPHGIRPLVLGKLEGDGYVVASESCA 198 (252)
T ss_pred EEECCCCCCCeEEEEeCCCeEEEEECHHH
Confidence 99999999999999987 99999999876
No 27
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.4e-24 Score=243.41 Aligned_cols=180 Identities=21% Similarity=0.229 Sum_probs=139.1
Q ss_pred HHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc-------------------
Q psy18015 212 LAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA------------------- 272 (708)
Q Consensus 212 ~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~------------------- 272 (708)
...||||.++.... +......+..++.+|+|||||++|++..++..+
T Consensus 11 ~~~mCGI~Gi~~~~--------------~~~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~ 76 (469)
T PRK05793 11 FKEECGVFGVFSKN--------------NIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLK 76 (469)
T ss_pred cCcCCeEEEEEcCC--------------CccHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHh
Confidence 44699999976321 002346778899999999999999986543210
Q ss_pred ---eeeEeeEEEe-cCCC--CCCCCCceec--CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh--
Q psy18015 273 ---TCTFLASVRW-TQGV--TISPQPLEDV--DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH-- 336 (708)
Q Consensus 273 ---~~~~~g~~l~-~~g~--~~~~QP~~~~--~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~-- 336 (708)
+.+++||+|+ |+|. ..++|||... +|. +++|||+|+|+. +||.+|. |++.||||+|++++.++
T Consensus 77 ~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~-eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~ 155 (469)
T PRK05793 77 GLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNAD-VIRELLEDGGRIFQTSIDSEVILNLIARSAK 155 (469)
T ss_pred ccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHH-HHHHHHHhcCCcccCCCHHHHHHHHHHHHcc
Confidence 2367899876 8886 3689999874 465 599999999998 8887653 89999999999999874
Q ss_pred -----hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcccc----ccceecCCCceEEec
Q psy18015 337 -----GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKSI----PRIEEIPNTHIYSVD 407 (708)
Q Consensus 337 -----g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a~~----~~l~~~p~~~~~~~d 407 (708)
++.+++++|+|+|++++++. ++++++||++|+|||||+..++.++||||.+++. ..+.+++|+.+..++
T Consensus 156 ~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~ 233 (469)
T PRK05793 156 KGLEKALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKLGDDYILSSESCALDTIGAEFIRDVEPGEIVIID 233 (469)
T ss_pred CCHHHHHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEECCEEEEEEChHHHhhcCcceEEEeCCCeEEEEE
Confidence 35678999999999999984 6899999999999999999999999999998821 233444554444444
Q ss_pred C
Q psy18015 408 I 408 (708)
Q Consensus 408 ~ 408 (708)
.
T Consensus 234 ~ 234 (469)
T PRK05793 234 E 234 (469)
T ss_pred C
Confidence 3
No 28
>PLN02440 amidophosphoribosyltransferase
Probab=99.92 E-value=3.4e-24 Score=240.91 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=127.6
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCc----------------------c
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDC----------------------A 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~ 272 (708)
||||.++... ......+..|+.+|+|||||+.|++..++.. -
T Consensus 1 MCGI~Gi~~~----------------~~~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~ 64 (479)
T PLN02440 1 ECGVVGIFGD----------------PEASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLP 64 (479)
T ss_pred CceEEEEECC----------------ccHHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccC
Confidence 7999987631 1234678899999999999999998744321 0
Q ss_pred eeeEeeEEEe-cCCC--CCCCCCceec--CCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh-----
Q psy18015 273 TCTFLASVRW-TQGV--TISPQPLEDV--DGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH----- 336 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~--~~~~QP~~~~--~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~----- 336 (708)
+.+++||+|+ +.|. ..+.|||... +|. +++|||+|+|+. +||.+|. |.+.||||+|+++|.++
T Consensus 65 g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~-eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~ 143 (479)
T PLN02440 65 GDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYE-ELRAKLEENGSIFNTSSDTEVLLHLIAISKARPF 143 (479)
T ss_pred CcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHH-HHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhH
Confidence 2368999875 7886 3789999863 365 699999999998 8877652 89999999999999764
Q ss_pred --hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe-CCEEEEEccCcc
Q psy18015 337 --GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 337 --g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~-~~~~~faSe~~a 390 (708)
++.+++++|+|+||+++|+. ++++++||++|+|||||+.. ++.++||||.++
T Consensus 144 ~~a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~a 198 (479)
T PLN02440 144 FSRIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCA 198 (479)
T ss_pred HHHHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchH
Confidence 35789999999999999995 57999999999999999975 578999999888
No 29
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.91 E-value=3e-24 Score=250.17 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=137.6
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCc----------------------c
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDC----------------------A 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~ 272 (708)
||||.++... +...+.+..|+.+|+|||||+.|++..+++. -
T Consensus 1 MCGI~g~~~~----------------~~~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~ 64 (604)
T PRK00331 1 MCGIVGYVGQ----------------RNAAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLP 64 (604)
T ss_pred CcEEEEEEcC----------------ccHHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCC
Confidence 8999987631 1124678899999999999999998743211 1
Q ss_pred eeeEeeEEEe-cCCC--CCCCCCceecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh---h---
Q psy18015 273 TCTFLASVRW-TQGV--TISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH---G--- 337 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~--~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~---g--- 337 (708)
+.+++||+|+ ++|. ..+.|||.+++|. +++|||+|||+. +||.+|. |.+.||+|+|+++|.++ |
T Consensus 65 g~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~-~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~ 143 (604)
T PRK00331 65 GTTGIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYA-ELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDL 143 (604)
T ss_pred CcEEEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHH-HHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCH
Confidence 2367999876 8886 3689999987776 589999999998 8877652 88999999999999875 3
Q ss_pred ---HHHhhhhccCCeEEEEEECCC-CEEEEEeCCCCCcceEEEEeCCEEEEEccCccc---cccceecCCCceEEecC
Q psy18015 338 ---VLKTLKHIQGPYSFIFLDKKN-KQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKS---IPRIEEIPNTHIYSVDI 408 (708)
Q Consensus 338 ---~~~~l~~L~G~fA~~i~d~~~-~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a~---~~~l~~~p~~~~~~~d~ 408 (708)
+..++++|+|+|||++||..+ ++++++||+ |||||+..++.++||||.+++ ...+..++|+.+..++-
T Consensus 144 ~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~ 218 (604)
T PRK00331 144 LEAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLGEGENFLASDALALLPYTRRVIYLEDGEIAVLTR 218 (604)
T ss_pred HHHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEcCCeEEEEECHHHHHHhcCEEEEECCCeEEEEEC
Confidence 457899999999999999886 899999997 999999999999999999872 22344555555555543
No 30
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=3.5e-24 Score=242.29 Aligned_cols=177 Identities=22% Similarity=0.234 Sum_probs=132.4
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCc----------------------c
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDC----------------------A 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~ 272 (708)
||||.++... ......+..|+.+|+|||||++|+++.++.. -
T Consensus 1 MCGI~Gi~~~----------------~~~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~ 64 (501)
T PRK09246 1 MCGIVGIVGH----------------SPVNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQ 64 (501)
T ss_pred CceEEEEEcC----------------cCHHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCC
Confidence 7999987631 1123567899999999999999998754211 0
Q ss_pred eeeEeeEEEe-cCCC--CCCCCCcee-cC-CcEEEEEEEEecCchhhccccC------CCCCChHHHHHHHHHHh-----
Q psy18015 273 TCTFLASVRW-TQGV--TISPQPLED-VD-GNVLLWNGDVYNFTSEDNKTIE------STSESDSLQVLQRFASH----- 336 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~--~~~~QP~~~-~~-g~v~v~NGeIyN~~~el~~~l~------~~s~sDtevl~~~~~~~----- 336 (708)
+.+++||+|+ |.|. ..++|||.. .. +.+++|||+|||+. +||.+|. |.|.||||+|++++.++
T Consensus 65 g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~-eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~ 143 (501)
T PRK09246 65 GNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAE-ELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFR 143 (501)
T ss_pred CCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHH-HHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhcc
Confidence 2368999875 8886 378999973 33 44699999999998 8876542 78999999999999764
Q ss_pred -----------hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe----CCEEEEEccCccc----ccccee
Q psy18015 337 -----------GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT----PTSILVTSVAHKS----IPRIEE 397 (708)
Q Consensus 337 -----------g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~----~~~~~faSe~~a~----~~~l~~ 397 (708)
++..++++|+|+||++++.. .++++++||++|+|||||+.. ++.++||||.+++ ..-+.+
T Consensus 144 g~~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~ 222 (501)
T PRK09246 144 GLPLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRD 222 (501)
T ss_pred ccccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEE
Confidence 12367899999999998853 457999999999999999987 3589999999882 112334
Q ss_pred cCCCceEEecCC
Q psy18015 398 IPNTHIYSVDIT 409 (708)
Q Consensus 398 ~p~~~~~~~d~~ 409 (708)
++|+.++.++.+
T Consensus 223 v~PGeiv~i~~~ 234 (501)
T PRK09246 223 VAPGEAIYITED 234 (501)
T ss_pred eCCCeEEEEECC
Confidence 555544444433
No 31
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.91 E-value=4.5e-24 Score=221.59 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=118.8
Q ss_pred CHHHHHHHHHhccCCCC-CCCCcEEecC---------C---------------------c-ceeeEeeEEEe-cCCC--C
Q psy18015 243 NAPIIDVCQEAIQRRGP-DSFKQLTISE---------D---------------------C-ATCTFLASVRW-TQGV--T 287 (708)
Q Consensus 243 ~~~~l~~~l~~l~hRGp-D~~g~~~~~~---------~---------------------~-~~~~~~g~~l~-~~g~--~ 287 (708)
..+.+..|+.+|+|||| |++|++..+. . . -..+++||+|+ |+|. .
T Consensus 15 ~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~ 94 (249)
T cd01907 15 VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWW 94 (249)
T ss_pred cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCc
Confidence 45788899999999999 9999987531 0 0 02368999876 7775 2
Q ss_pred CCCCCceecCCcEEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH----hh---------------------
Q psy18015 288 ISPQPLEDVDGNVLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS----HG--------------------- 337 (708)
Q Consensus 288 ~~~QP~~~~~g~v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~----~g--------------------- 337 (708)
.++|||... ..+++|||+|||+. +||.+|. |.+.||||+|+++++. ++
T Consensus 95 ~n~qP~~~~-~~~lvhNG~I~N~~-~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~ 172 (249)
T cd01907 95 YGAHPFSIG-DIAVVHNGEISNYG-SNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLL 172 (249)
T ss_pred cCCCCeecC-CEEEEeCCeecCHH-HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHH
Confidence 689999864 44699999999998 8876552 8999999999999864 22
Q ss_pred ---HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 338 ---VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 338 ---~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
+..++++|+|+|||+++++ ++++++||++|.|||||+..++.++||||.++
T Consensus 173 ~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~~~~~~~ASE~~a 226 (249)
T cd01907 173 ALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAETDDYVAIASEECA 226 (249)
T ss_pred HHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEECCEEEEEEcHHH
Confidence 2357899999999999985 57999999999999999999999999999988
No 32
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.91 E-value=4.5e-24 Score=248.84 Aligned_cols=162 Identities=21% Similarity=0.285 Sum_probs=130.5
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCCc----------------------ceeeEeeEEEe-cCCC--CCCCCCceecCC
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISEDC----------------------ATCTFLASVRW-TQGV--TISPQPLEDVDG 298 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~~~~~~g~~l~-~~g~--~~~~QP~~~~~g 298 (708)
.+.+..|+.+|+|||||++|++..+++. ...+++||+|+ ++|. ..+.|||.++++
T Consensus 13 ~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~ 92 (607)
T TIGR01135 13 VPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGG 92 (607)
T ss_pred HHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCCCCccCCCCcCcCCC
Confidence 4678999999999999999998743211 12357999876 8885 368999998777
Q ss_pred c-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh---------HHHhhhhccCCeEEEEEECCC-CEEE
Q psy18015 299 N-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG---------VLKTLKHIQGPYSFIFLDKKN-KQLW 362 (708)
Q Consensus 299 ~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g---------~~~~l~~L~G~fA~~i~d~~~-~~l~ 362 (708)
. +++|||+||||. +||.+|. |.+.||||+|+++|.+++ +..++++|+|+|||++||+.+ ++++
T Consensus 93 ~~~~vhNG~I~N~~-~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~ 171 (607)
T TIGR01135 93 RIAVVHNGIIENYA-ELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLV 171 (607)
T ss_pred CEEEEEecccCCHH-HHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEEE
Confidence 6 699999999998 8887652 889999999999998865 237899999999999999876 4699
Q ss_pred EEeCCCCCcceEEEEeCCEEEEEccCccc---cccceecCCCceEEecCC
Q psy18015 363 FGKDPIGRHSLLLKCTPTSILVTSVAHKS---IPRIEEIPNTHIYSVDIT 409 (708)
Q Consensus 363 l~RD~~G~kPLyy~~~~~~~~faSe~~a~---~~~l~~~p~~~~~~~d~~ 409 (708)
++||+ |||||+..++.++||||.+++ ...+..++++.++.++.+
T Consensus 172 ~~Rd~---~PL~~~~~~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~ 218 (607)
T TIGR01135 172 AARSG---SPLIVGLGDGENFVASDVTALLPVTRRVIYLEDGDIAILTRD 218 (607)
T ss_pred EEECC---CceEEEECCCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECC
Confidence 99996 999999999999999999873 233445666665555544
No 33
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.90 E-value=1.2e-23 Score=246.04 Aligned_cols=156 Identities=25% Similarity=0.311 Sum_probs=129.6
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecC-Cc----------------------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISE-DC---------------------- 271 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~-~~---------------------- 271 (708)
||||.++. |+ ....+.+..++.+|+|||||++|++..++ +.
T Consensus 24 MCGI~G~~---------~~-------~~~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~ 87 (640)
T PTZ00295 24 CCGIVGYL---------GN-------EDASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEK 87 (640)
T ss_pred CCeEEEEE---------cC-------cchHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHH
Confidence 99999976 32 13457788999999999999999988542 10
Q ss_pred ------ceeeEeeEEEe-cCCC--CCCCCCceecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH-
Q psy18015 272 ------ATCTFLASVRW-TQGV--TISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS- 335 (708)
Q Consensus 272 ------~~~~~~g~~l~-~~g~--~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~- 335 (708)
-+.+++||+|| |+|. ..|+|||.+++|. +++|||+||||. +||.+|. |.|+||||+|++++.+
T Consensus 88 ~~~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~-~Lr~~L~~~g~~f~s~tDsEvi~~li~~~ 166 (640)
T PTZ00295 88 LLDSHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYV-ELKSELIAKGIKFRSETDSEVIANLIGLE 166 (640)
T ss_pred hhcCCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHH-HHHHHHHHCCCcccCCChHHHHHHHHHHH
Confidence 01358999887 8886 3789999987676 599999999998 8887652 8999999999999863
Q ss_pred --h------hHHHhhhhccCCeEEEEEECC-CCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 336 --H------GVLKTLKHIQGPYSFIFLDKK-NKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 336 --~------g~~~~l~~L~G~fA~~i~d~~-~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
+ ++.+++++|+|+|||++||+. .++++++||+ |||||+..++.++||||.++
T Consensus 167 ~~~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~~~~~~~aSE~~a 227 (640)
T PTZ00295 167 LDQGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIGDDSIYVASEPSA 227 (640)
T ss_pred HhcCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEcCceEEEEechHH
Confidence 2 345789999999999999976 4799999998 99999999999999999988
No 34
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.3e-23 Score=235.44 Aligned_cols=155 Identities=20% Similarity=0.295 Sum_probs=133.3
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc----------------------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA---------------------- 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~---------------------- 272 (708)
||||.++... . ....++|.+.|++|+|||+||+|++..+++.+
T Consensus 1 MCGIvG~i~~--------~-------~~~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~ 65 (597)
T COG0449 1 MCGIVGYIGF--------L-------REAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLI 65 (597)
T ss_pred CCcEEEEEcC--------C-------ccHHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccC
Confidence 8999997621 1 22578999999999999999999998744311
Q ss_pred eeeEeeEEEe-cCCC--CCCCCCceecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH-------h
Q psy18015 273 TCTFLASVRW-TQGV--TISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS-------H 336 (708)
Q Consensus 273 ~~~~~g~~l~-~~g~--~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~-------~ 336 (708)
+.+++||+|| |||. ..|+|||++ ++ +|||||.|.||. +||++|. |.|+||||||+|++++ .
T Consensus 66 ~~~gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~-eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~ 142 (597)
T COG0449 66 GGVGIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFA-ELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLE 142 (597)
T ss_pred CceeeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHH-HHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHH
Confidence 2478999999 9997 489999987 55 699999999999 8988764 9999999999999976 3
Q ss_pred hHHHhhhhccCCeEEEEEECCC-CEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 337 GVLKTLKHIQGPYSFIFLDKKN-KQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 337 g~~~~l~~L~G~fA~~i~d~~~-~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
++..++++|.|+||+++.+++. ++++++|.. +||+.+.+++..++|||..+
T Consensus 143 a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~g~~e~f~aSD~~a 194 (597)
T COG0449 143 AVKKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLVIGVGEGENFLASDVSA 194 (597)
T ss_pred HHHHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeEEEecCCcceEecChhh
Confidence 4567889999999999999987 799999999 99999999999999999988
No 35
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.90 E-value=5.5e-23 Score=229.45 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=127.4
Q ss_pred CHHHHHHHHHhccCCCCCCCCcEEecCCc----------------------ceeeEeeEEEe-cCCC--CCCCCCcee-c
Q psy18015 243 NAPIIDVCQEAIQRRGPDSFKQLTISEDC----------------------ATCTFLASVRW-TQGV--TISPQPLED-V 296 (708)
Q Consensus 243 ~~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------~~~~~~g~~l~-~~g~--~~~~QP~~~-~ 296 (708)
....+..|+.+|+|||||++|++..++.. .+.+++||+|+ +.|. ..+.|||.. .
T Consensus 13 ~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~ 92 (442)
T TIGR01134 13 AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNS 92 (442)
T ss_pred HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCCCCccCCCCEEEeC
Confidence 45678899999999999999998754321 02368999876 8886 378999974 3
Q ss_pred C-CcEEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh---------HHHhhhhccCCeEEEEEECCCCEE
Q psy18015 297 D-GNVLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG---------VLKTLKHIQGPYSFIFLDKKNKQL 361 (708)
Q Consensus 297 ~-g~v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g---------~~~~l~~L~G~fA~~i~d~~~~~l 361 (708)
. +.+++|||+|+|+. +|+.+|. |.+.||+|+|+++|.+++ +.+++++|+|+|+|++|+ .+++
T Consensus 93 ~~g~alahNG~I~N~~-eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~L 169 (442)
T TIGR01134 93 PGGIALAHNGNLVNAE-ELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDGL 169 (442)
T ss_pred CCCEEEEEEEEEcCHH-HHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCEE
Confidence 3 44699999999998 8876552 889999999999998743 357899999999999997 4699
Q ss_pred EEEeCCCCCcceEEEEeCCEEEEEccCccc----cccceecCCCceEEec
Q psy18015 362 WFGKDPIGRHSLLLKCTPTSILVTSVAHKS----IPRIEEIPNTHIYSVD 407 (708)
Q Consensus 362 ~l~RD~~G~kPLyy~~~~~~~~faSe~~a~----~~~l~~~p~~~~~~~d 407 (708)
+++||++|++||||+..++.++||||..++ ...+..++|+.++.++
T Consensus 170 ~a~RD~~G~rPL~~g~~~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~ 219 (442)
T TIGR01134 170 IAVRDPHGIRPLVLGKRGDGYVVASESCALDILGAEFIRDVEPGEAVVID 219 (442)
T ss_pred EEEECCCCCCCcEEEEeCCEEEEEeCchHhcccCCcEEEEECCCeEEEEE
Confidence 999999999999999999999999998872 1223344554444444
No 36
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.89 E-value=1.7e-23 Score=195.03 Aligned_cols=109 Identities=30% Similarity=0.508 Sum_probs=70.6
Q ss_pred EEecCCCCCCCCCce-ecCCc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH---hhHHHhhhhccCCe
Q psy18015 280 VRWTQGVTISPQPLE-DVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS---HGVLKTLKHIQGPY 349 (708)
Q Consensus 280 ~l~~~g~~~~~QP~~-~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~---~g~~~~l~~L~G~f 349 (708)
|+++.+...+.||+. +.++. +++|||+|||+. +|+.++. +.+.+|+|+++++|++ +| .+++++|+|+|
T Consensus 3 rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~-eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~-~~~~~~l~G~f 80 (125)
T PF13537_consen 3 RLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNRE-ELRRELEERGHQFSSDSDSELILHLYEEYREWG-EDFLKRLDGPF 80 (125)
T ss_dssp ----------------------EEEEEEEES-HH-HHHHTSSSS---S--SSHHHHHHHHHHH---HG-GGGGGT--EEE
T ss_pred ccccccccccccccccccccCEEEEEEEEEEChH-HHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH-HHHHHhCCceE
Confidence 355656568899999 56665 799999999998 8887663 6889999999999987 87 89999999999
Q ss_pred EEEEEECCCCEEEEEeCCCCCcceEEEEeC-CEEEEEccCcc
Q psy18015 350 SFIFLDKKNKQLWFGKDPIGRHSLLLKCTP-TSILVTSVAHK 390 (708)
Q Consensus 350 A~~i~d~~~~~l~l~RD~~G~kPLyy~~~~-~~~~faSe~~a 390 (708)
||++||+.+++++++||++|+|||||+..+ +.++|||++++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~ 122 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKA 122 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHH
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHH
Confidence 999999988999999999999999999997 79999999887
No 37
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.88 E-value=3.8e-22 Score=202.66 Aligned_cols=142 Identities=30% Similarity=0.470 Sum_probs=121.3
Q ss_pred HHHHHhccCCCCCCCCcEEecCCcc----------------------eeeEeeEEEe-cCCC--CCCCCCceecCCc-EE
Q psy18015 248 DVCQEAIQRRGPDSFKQLTISEDCA----------------------TCTFLASVRW-TQGV--TISPQPLEDVDGN-VL 301 (708)
Q Consensus 248 ~~~l~~l~hRGpD~~g~~~~~~~~~----------------------~~~~~g~~l~-~~g~--~~~~QP~~~~~g~-v~ 301 (708)
..|+..++|||||+.|++..+.... ..+++||+|+ +.|. ..+.|||....+. ++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 5799999999999999987653100 1367899876 7775 4789999876655 69
Q ss_pred EEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHhh--------HHHhhhhccCCeEEEEEECCCCEEEEEeCCC
Q psy18015 302 LWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASHG--------VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPI 368 (708)
Q Consensus 302 v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~g--------~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~ 368 (708)
+|||+|+|+. +|+..+. +.+.||+|+++++|.+++ +.+++++++|.|+|+++|...++++++||++
T Consensus 101 ~hNG~i~n~~-~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~ 179 (220)
T cd00352 101 VHNGEIYNYR-ELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRF 179 (220)
T ss_pred EECcEEEcHH-HHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCC
Confidence 9999999998 7776432 788999999999999987 4789999999999999998879999999999
Q ss_pred CCcceEEEEe-CCEEEEEccCcc
Q psy18015 369 GRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 369 G~kPLyy~~~-~~~~~faSe~~a 390 (708)
|.+||||+.. ++.++||||..+
T Consensus 180 G~~pL~~~~~~~~~~~~aSe~~~ 202 (220)
T cd00352 180 GIRPLYYGITKDGGLVFASEPKA 202 (220)
T ss_pred CCCCeEEEEeCCCeEEEEecHHH
Confidence 9999999999 999999999887
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.87 E-value=5.2e-22 Score=232.00 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=128.9
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecC---------------C---------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISE---------------D--------- 270 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~---------------~--------- 270 (708)
||||.++. |.++.+. .+...+.+..+|.+|+|||+|++|+...++ +
T Consensus 1 mCGI~g~~---------~~~~~~~-~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G 70 (670)
T PTZ00394 1 MCGIFGYA---------NHNVPRT-VEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVG 70 (670)
T ss_pred CceEEEEE---------CCCCccc-cccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCc
Confidence 89999976 3222221 113457899999999999999999998511 1
Q ss_pred c-------c-----------------eeeEeeEEEe-cCCC--CCCCCCceecCCc-EEEEEEEEecCchhhccccC---
Q psy18015 271 C-------A-----------------TCTFLASVRW-TQGV--TISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE--- 319 (708)
Q Consensus 271 ~-------~-----------------~~~~~g~~l~-~~g~--~~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~--- 319 (708)
. + +.+++||+|| ++|. ..++|||.+++|. ++||||+||||. +||.+|.
T Consensus 71 ~v~~l~~~~~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~-eLr~~L~~~g 149 (670)
T PTZ00394 71 NISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYM-TLKELLKEEG 149 (670)
T ss_pred cHHHHHHHHhcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHH-HHHHHHHHcC
Confidence 0 1 1268999987 8996 4789999988777 599999999999 8887663
Q ss_pred --CCCCChHHHHHHHHH----Hhh-------HHHhhhhccCCeEEEEEECC-CCEEEEEeCCCCCcceEEEEeC------
Q psy18015 320 --STSESDSLQVLQRFA----SHG-------VLKTLKHIQGPYSFIFLDKK-NKQLWFGKDPIGRHSLLLKCTP------ 379 (708)
Q Consensus 320 --~~s~sDtevl~~~~~----~~g-------~~~~l~~L~G~fA~~i~d~~-~~~l~l~RD~~G~kPLyy~~~~------ 379 (708)
|+|+||||||+|+++ ++| +.+++++|+|+|||++.... .++++++||+ +||+++..+
T Consensus 150 ~~f~s~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~ 226 (670)
T PTZ00394 150 YHFSSDTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGC 226 (670)
T ss_pred CEecCCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEecccccccc
Confidence 899999999997754 334 34789999999999998654 3899999999 999999976
Q ss_pred ---------------CEEEEEccCcc
Q psy18015 380 ---------------TSILVTSVAHK 390 (708)
Q Consensus 380 ---------------~~~~faSe~~a 390 (708)
+.++||||+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~aSd~~a 252 (670)
T PTZ00394 227 VMKLQTYDLTDLSGPLEVFFSSDVNS 252 (670)
T ss_pred ccccccccccccCCCCcEEEEeChHH
Confidence 48999999998
No 39
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.87 E-value=4.7e-22 Score=199.19 Aligned_cols=100 Identities=18% Similarity=0.353 Sum_probs=88.0
Q ss_pred CCCceecCCc-EEEEEEEEecCchhhccccC-CCCCChHHHHHHHHHHh---hH---HHhhhhccCCeEEEEEECCCCEE
Q psy18015 290 PQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE-STSESDSLQVLQRFASH---GV---LKTLKHIQGPYSFIFLDKKNKQL 361 (708)
Q Consensus 290 ~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~-~~s~sDtevl~~~~~~~---g~---~~~l~~L~G~fA~~i~d~~~~~l 361 (708)
.|-+.+.++. +++|||||||+. +|+.++. +++.||+|+|+++|++| |. .+++++|+|||||++||+.++++
T Consensus 63 ~~rl~~~~~~~~~vfnGeIyN~~-eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l 141 (224)
T cd01910 63 HPRLFAVKDDIFCLFQGHLDNLG-SLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTV 141 (224)
T ss_pred cCcEECCCCCEEEEEEeEEcCHH-HHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEE
Confidence 3445565554 689999999999 9988764 68899999999999986 63 57999999999999999999999
Q ss_pred EEEeCCCCCcceEEEEe-CCEEEEEccCcc
Q psy18015 362 WFGKDPIGRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 362 ~l~RD~~G~kPLyy~~~-~~~~~faSe~~a 390 (708)
+++||++|++||||+.. ++.++||||+++
T Consensus 142 ~lARD~~Gi~PLYyg~~~dG~l~FASElka 171 (224)
T cd01910 142 FVASDADGSVPLYWGIAADGSVVFSDDVEL 171 (224)
T ss_pred EEEEcCCCCcceEEEEeCCCEEEEEeCHHH
Confidence 99999999999999976 799999999998
No 40
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.87 E-value=8e-22 Score=185.67 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=104.9
Q ss_pred CCCCCc--EEecCCcceeeEeeEEEe-cCCCC--CCCCCceecCCc-EEEEEEEEecCchhhccccC-----CCCCChHH
Q psy18015 259 PDSFKQ--LTISEDCATCTFLASVRW-TQGVT--ISPQPLEDVDGN-VLLWNGDVYNFTSEDNKTIE-----STSESDSL 327 (708)
Q Consensus 259 pD~~g~--~~~~~~~~~~~~~g~~l~-~~g~~--~~~QP~~~~~g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDte 327 (708)
||..++ +..+. +++||+|+ +.|.. .++|||.+.+|. +++|||+|+|+. +|++++. |.+.||||
T Consensus 1 pd~~~~~~~~~~~-----~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~-~L~~~l~~~g~~~~~~tDSE 74 (133)
T PF13522_consen 1 PDFEGLASWLDGE-----AALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYK-ELREELGEKGHPFESDTDSE 74 (133)
T ss_pred CChHHHHHhcCCC-----EEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHH-HHHHHHHHCCCcccCCCHHH
Confidence 677766 33222 57899876 88873 556999666676 599999999998 7776553 88999999
Q ss_pred HHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEcc
Q psy18015 328 QVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSV 387 (708)
Q Consensus 328 vl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe 387 (708)
+|++++.++| .+++++++|+|++++|++..++++++||++|.+||||+..++.++||||
T Consensus 75 ii~~li~~~g-~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~~~~~~~ASE 133 (133)
T PF13522_consen 75 IIAALIHRWG-EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRDGDGYVFASE 133 (133)
T ss_pred HHHHHHHHHH-HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEcCCEEEEEeC
Confidence 9999999999 8999999999999999998899999999999999999999999999997
No 41
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.86 E-value=1.4e-21 Score=229.15 Aligned_cols=182 Identities=17% Similarity=0.226 Sum_probs=137.0
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCc-----------------------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDC----------------------- 271 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~----------------------- 271 (708)
||||.++.... ..+- .....+.+..+|.+|+|||+|++|++..+++.
T Consensus 1 mCGI~g~~~~~---------~~~~-~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~ 70 (680)
T PLN02981 1 MCGIFAYLNYN---------VPRE-RRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVY 70 (680)
T ss_pred CceEEEEEccC---------Cccc-cccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHh
Confidence 79999876310 0000 01345789999999999999999999854321
Q ss_pred --------------ceeeEeeEEEe-cCCC--CCCCCCceecC-Cc-EEEEEEEEecCchhhccccC-----CCCCChHH
Q psy18015 272 --------------ATCTFLASVRW-TQGV--TISPQPLEDVD-GN-VLLWNGDVYNFTSEDNKTIE-----STSESDSL 327 (708)
Q Consensus 272 --------------~~~~~~g~~l~-~~g~--~~~~QP~~~~~-g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDte 327 (708)
.+.+++||+|| |+|. ..++|||.++. |. ++||||+||||. +||.+|. |+|+||||
T Consensus 71 ~~~~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~-eLr~~L~~~G~~f~s~tDtE 149 (680)
T PLN02981 71 EEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYE-VLKETLLRHGFTFESDTDTE 149 (680)
T ss_pred hhccccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHH-HHHHHHHhCCCeeccCCHHH
Confidence 01268999987 8886 37899998754 55 699999999999 8887653 89999999
Q ss_pred HHHHHH----HHhh-----------HHHhhhhccCCeEEEEEECCC-CEEEEEeCCCCCcceEEEEeC------------
Q psy18015 328 QVLQRF----ASHG-----------VLKTLKHIQGPYSFIFLDKKN-KQLWFGKDPIGRHSLLLKCTP------------ 379 (708)
Q Consensus 328 vl~~~~----~~~g-----------~~~~l~~L~G~fA~~i~d~~~-~~l~l~RD~~G~kPLyy~~~~------------ 379 (708)
+|+|++ .++| +..++++|+|+|||+++++.. ++++++||+ +||+++..+
T Consensus 150 vi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~ 226 (680)
T PLN02981 150 VIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFT 226 (680)
T ss_pred HHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccc
Confidence 999984 3332 335899999999999999764 899999997 999999874
Q ss_pred ------------CEEEEEccCccc---cccceecCCCceEEecCCC
Q psy18015 380 ------------TSILVTSVAHKS---IPRIEEIPNTHIYSVDITC 410 (708)
Q Consensus 380 ------------~~~~faSe~~a~---~~~l~~~p~~~~~~~d~~~ 410 (708)
+.+++|||.+++ ...+..++++.+..++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~ 272 (680)
T PLN02981 227 SEGFLTKNRDKPKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGG 272 (680)
T ss_pred cccccccccccCCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCe
Confidence 379999999883 2334455666555555443
No 42
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.81 E-value=2.6e-19 Score=192.73 Aligned_cols=160 Identities=24% Similarity=0.231 Sum_probs=129.9
Q ss_pred hhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCCcc---------------------
Q psy18015 214 WKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCA--------------------- 272 (708)
Q Consensus 214 ~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~~~--------------------- 272 (708)
.|||+.++...+ +......+..+|.+|+|||++++|+.+.++..+
T Consensus 3 e~CGV~Gi~~~~--------------~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~ 68 (470)
T COG0034 3 EMCGVFGIWGHK--------------DNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRK 68 (470)
T ss_pred ccceEEEEecCC--------------ccchHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhh
Confidence 589999876321 122467889999999999999999988765311
Q ss_pred --eeeEeeEEE-ecCCCC--CCCCCceecC--Cc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHHh---
Q psy18015 273 --TCTFLASVR-WTQGVT--ISPQPLEDVD--GN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFASH--- 336 (708)
Q Consensus 273 --~~~~~g~~l-~~~g~~--~~~QP~~~~~--g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~~--- 336 (708)
+.+++||++ +|.|.+ .++||+.... |. .++|||.|-|.. +||.+|. |.|.+|||+|+|++.+.
T Consensus 69 l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~-~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~ 147 (470)
T COG0034 69 LQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAE-ELRRELEEEGAIFNTTSDSEVLLHLLARELDE 147 (470)
T ss_pred ccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHH-HHHHHHHhcCceecCCccHHHHHHHHHhhccc
Confidence 124789986 588863 7899997643 34 599999999998 8887664 89999999999999872
Q ss_pred -----hHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeC-CEEEEEccCcc
Q psy18015 337 -----GVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTP-TSILVTSVAHK 390 (708)
Q Consensus 337 -----g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~-~~~~faSe~~a 390 (708)
++..+++++.|.|++++... ++|+.+|||.|+|||.++..+ |.++||||..+
T Consensus 148 ~~~~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~A 205 (470)
T COG0034 148 DDIFEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCA 205 (470)
T ss_pred ccHHHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhh
Confidence 36778899999999999985 499999999999999999974 55999999888
No 43
>KOG0572|consensus
Probab=99.75 E-value=1.8e-17 Score=173.06 Aligned_cols=159 Identities=22% Similarity=0.313 Sum_probs=124.7
Q ss_pred hcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCCCcEEecCC-cc---------------------
Q psy18015 215 KLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISED-CA--------------------- 272 (708)
Q Consensus 215 ~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~g~~~~~~~-~~--------------------- 272 (708)
|||+.++... |. ....+.+....-+|+|||+|++|+.+.++. .+
T Consensus 1 eCGv~Gi~~a-------~~-------~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L 66 (474)
T KOG0572|consen 1 ECGVFGIVAA-------GE-------ASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQL 66 (474)
T ss_pred CCcEEEEEec-------Cc-------cccCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhC
Confidence 6888886532 21 112345555668999999999999886632 00
Q ss_pred -eeeEeeEEE-ecCCCC--CCCCCceecC--Cc-EEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH-----
Q psy18015 273 -TCTFLASVR-WTQGVT--ISPQPLEDVD--GN-VLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS----- 335 (708)
Q Consensus 273 -~~~~~g~~l-~~~g~~--~~~QP~~~~~--g~-v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~----- 335 (708)
+.++|||++ +|.|.+ .+.|||.... |. .+.|||++-|++ +||.++. +.|.||+|+|++++..
T Consensus 67 ~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~-~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~ 145 (474)
T KOG0572|consen 67 PGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYK-SLRRELLEEGVGLNTSSDSELILQLIAYAPEDV 145 (474)
T ss_pred ccceeeeeeecccccccccccccceEeeccCceEEEeccCcccchH-HHHHHHHhcCcccccCCcHHHHHHHHHhchHhh
Confidence 236899986 588874 6899998654 65 589999999999 8887653 8999999999999864
Q ss_pred ---------hhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEeC-----CEEEEEccCcc
Q psy18015 336 ---------HGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTP-----TSILVTSVAHK 390 (708)
Q Consensus 336 ---------~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~-----~~~~faSe~~a 390 (708)
..+..+++.++|.|+++++-. ++|+..||++|.|||.++... ..+++|||..+
T Consensus 146 ~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~ 212 (474)
T KOG0572|consen 146 YRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCA 212 (474)
T ss_pred hcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEeccee
Confidence 235678899999999999974 579999999999999999864 37999999887
No 44
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.68 E-value=2e-17 Score=189.70 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=133.1
Q ss_pred CchHHHHHHHhhhcCCCC-----------CCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhH
Q psy18015 1 GIDSTVIALLANQFVPSS-----------EPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGL 69 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~-----------~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~ 69 (708)
||||++||++|.++.... .+|.-..|+|++ +||+.-|+
T Consensus 237 GLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-------------------------------~~D~~~A~ 285 (554)
T PRK09431 237 GLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-------------------------------SPDLKAAR 285 (554)
T ss_pred CccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-------------------------------CChHHHHH
Confidence 899999999999987532 246666666654 68999999
Q ss_pred HHHHHHHHhCCCCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccccc-------eeeeeeeccCchhhH
Q psy18015 70 SSLQELTTLCPDRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVD-------FFANVNITAGGDKAV 142 (708)
Q Consensus 70 ~~~~el~~~~p~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~-------~~a~~~~~~~g~~~~ 142 (708)
+..++|-.. ..+|.++.++....-..+..++..+-|.... .+...|. --.||+|||+|+||
T Consensus 286 ~vA~~lg~~-------h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~----~~~p~yll~~~~~~~gvkvvLsGeGaDE- 353 (554)
T PRK09431 286 EVADHLGTV-------HHEIHFTVQEGLDALRDVIYHLETYDVTTIR----ASTPMYLMARKIKAMGIKMVLSGEGADE- 353 (554)
T ss_pred HHHHHhCCc-------cEEEEeCHHHHHHHHHHHHHHHhccCCccch----hHHHHHHHHHHHHHcCCEEEEecCchhh-
Confidence 998888653 3566666555322111111112211121100 0111111 12489999999999
Q ss_pred hhhccCCchhhhh----------hHHHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC-----c--hhh
Q psy18015 143 LMKTLDTYPLFCD----------NVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP-----S--VGD 205 (708)
Q Consensus 143 ~~~~~~gy~~~~~----------~~~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~-----~--~~~ 205 (708)
+||||.+|.. .+..+.+++..||.|.||++|++|+|+|+|||| ..+|+++.+||+ + ..+
T Consensus 354 ---lFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD-~~lv~~a~~ip~~~K~~~~~~~~ 429 (554)
T PRK09431 354 ---LFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLD-KEFLDVAMRINPEDKMCGNGKME 429 (554)
T ss_pred ---hhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCceeecCcCC-HHHHHHHHhCCHHHHhcCCCCCC
Confidence 9999998752 133466788889999999999999999999999 999999999997 2 247
Q ss_pred hHHHHHHHhhcCceeeecchhhhhccCcc
Q psy18015 206 KLLLRLLAWKLGLKVAASLPKRALQFGSR 234 (708)
Q Consensus 206 k~~lr~~a~~~gi~~~~~~~k~A~q~gs~ 234 (708)
|+|||+++..+....+..++|++.+.|.+
T Consensus 430 K~iLR~a~~~~LP~~I~~R~K~~f~~~~g 458 (554)
T PRK09431 430 KHILREAFEGYLPESILWRQKEQFSDGVG 458 (554)
T ss_pred HHHHHHHHhhhCCHHHhCCCCCCCCCCCh
Confidence 99999999988555788999999888875
No 45
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.68 E-value=2.1e-17 Score=190.37 Aligned_cols=193 Identities=17% Similarity=0.176 Sum_probs=130.9
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
||||++||++|.++.+. ++|||.||++.+-.+.. ... ..+||+..|++..++|...+
T Consensus 247 GLDSSlIaala~~~~~~-~~~~~~~~~~~~l~tfs----------------ig~-----~~~~D~~~Ar~vA~~lg~~h- 303 (586)
T PTZ00077 247 GLDSSIVAAIVAKLIKN-GEIDLSKRGMPKLHSFC----------------IGL-----EGSPDLKAARKVAEYLGTEH- 303 (586)
T ss_pred CchHHHHHHHHHHhhcc-cccccccccCCCceEEE----------------cCC-----CCCchHHHHHHHHHHhCCcC-
Confidence 89999999999998764 45999999985422111 001 14899999999999998543
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccc--cc------e-eeeeeeccCchhhHhhhccCCch
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEV--VD------F-FANVNITAGGDKAVLMKTLDTYP 151 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~--~~------~-~a~~~~~~~g~~~~~~~~~~gy~ 151 (708)
..|.| ..++.......+ + |...+.....+..+. |. . -.||+|||+|+|| +||||.
T Consensus 304 -~~i~~-----~~~e~~~~l~~~---i---~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDE----lFgGY~ 367 (586)
T PTZ00077 304 -HEFTF-----TVEEGIDALPDV---I---YHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDE----LFGGYL 367 (586)
T ss_pred -cEEEE-----CHHHHHHHHHHH---H---HHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhh----hccCcH
Confidence 34443 223311111111 1 111111111111111 11 1 1489999999999 999999
Q ss_pred hhhhh------H----HHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC-----c----hhhhHHHHHH
Q psy18015 152 LFCDN------V----AELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP-----S----VGDKLLLRLL 212 (708)
Q Consensus 152 ~~~~~------~----~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~-----~----~~~k~~lr~~ 212 (708)
+|... . ..+..++..||-|+||++|++|+|+|+|||| ..+|+++.+||+ + ..+|||||++
T Consensus 368 ~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvPFLD-~~~v~~a~~ip~~~K~~~~~~~~~~K~iLR~a 446 (586)
T PTZ00077 368 YFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLD-KDFLEYVMNIDPKYKMCNAFEGQMEKYILRKA 446 (586)
T ss_pred hhhhCcchHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecCcCC-HHHHHHHHhCCHHHhcCCCCCCCCCHHHHHHH
Confidence 87521 1 2245688888999999999999999999999 999999999996 2 3579999999
Q ss_pred Hhhc---Cce-eeecchhhhhccCccc
Q psy18015 213 AWKL---GLK-VAASLPKRALQFGSRI 235 (708)
Q Consensus 213 a~~~---gi~-~~~~~~k~A~q~gs~i 235 (708)
+... -|+ .+..++|. ||+.++
T Consensus 447 ~~~~~~~~LP~~I~~R~K~--~F~~~~ 471 (586)
T PTZ00077 447 FEGLEKPYLPDEILWRQKE--QFSDGV 471 (586)
T ss_pred HhccCcCcCCHHHhCCccc--CCCCCC
Confidence 9972 355 68888886 555443
No 46
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.67 E-value=2.6e-17 Score=189.13 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=130.3
Q ss_pred CchHHHHHHHhhhcCCCCC-------CeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHH
Q psy18015 1 GIDSTVIALLANQFVPSSE-------PIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQ 73 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~-------~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~ 73 (708)
||||++||++|.++++... ++.-.+|+|++ +||+..|++..+
T Consensus 235 GLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~-------------------------------~~D~~~Ar~vA~ 283 (578)
T PLN02549 235 GLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEG-------------------------------SPDLKAAREVAD 283 (578)
T ss_pred CccHHHHHHHHHHhhhhcccccccCCCceEEecCCCC-------------------------------CCHHHHHHHHHH
Confidence 8999999999999876532 45555555543 789999999999
Q ss_pred HHHHhCCCCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccccc--------ee-eeeeeccCchhhHhh
Q psy18015 74 ELTTLCPDRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVD--------FF-ANVNITAGGDKAVLM 144 (708)
Q Consensus 74 el~~~~p~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~--------~~-a~~~~~~~g~~~~~~ 144 (708)
+|...+ .+|++..++....- -..+|+..+.+...+..+... .. .||+|||+|+||
T Consensus 284 ~lg~~h-------~ev~~~~~e~~~~l------~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDE--- 347 (578)
T PLN02549 284 YLGTVH-------HEFHFTVQEGIDAI------EDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDE--- 347 (578)
T ss_pred HhCCCC-------eEEEEChHHHHHHH------HHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHh---
Confidence 997544 24444444322111 222333333222222111111 11 488999999999
Q ss_pred hccCCchhhhh----------hHHHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC-----c----hhh
Q psy18015 145 KTLDTYPLFCD----------NVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP-----S----VGD 205 (708)
Q Consensus 145 ~~~~gy~~~~~----------~~~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~-----~----~~~ 205 (708)
+||||.+|.. .+..+.+++..|+.|+||++|++|+|+|+|||| ..+|+++.+||+ + ..+
T Consensus 348 -lFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD-~~~v~~a~~ip~~~k~~~~~~~~~e 425 (578)
T PLN02549 348 -IFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD-KEFIDVAMSIDPEWKMIRPGEGRIE 425 (578)
T ss_pred -hhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC-HHHHHHHHhCCHHHHhcCCCCCCCc
Confidence 9999998762 122355677789999999999999999999999 999999999996 2 247
Q ss_pred hHHHHHHHhhc---Cce-eeecchhhhhccCcc
Q psy18015 206 KLLLRLLAWKL---GLK-VAASLPKRALQFGSR 234 (708)
Q Consensus 206 k~~lr~~a~~~---gi~-~~~~~~k~A~q~gs~ 234 (708)
|||||.++... -|+ .+..++|.+.+.|.+
T Consensus 426 K~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g 458 (578)
T PLN02549 426 KWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVG 458 (578)
T ss_pred hHHHHHHHhhcCcccCCHHHhCCCccCCCCCCc
Confidence 99999999873 355 688999987777754
No 47
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.56 E-value=8.4e-16 Score=175.86 Aligned_cols=193 Identities=19% Similarity=0.185 Sum_probs=143.0
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
||||++||+++++..|..... ...|.||+. ..||+..|+.+.++|.. |
T Consensus 240 GlDSS~Iaa~a~~~~~~~~~~-~fsvg~~~~-----------------------------~~~D~~~a~~~A~~lg~--~ 287 (542)
T COG0367 240 GLDSSLIAAIAAEELGKEGKT-TFTVGFEDS-----------------------------DSPDAKYARAVAKFLGT--P 287 (542)
T ss_pred CccHHHHHHHHHHhcccccee-eeEeecCCC-----------------------------CCchHHHHHHHHHHhCC--C
Confidence 799999999999998766544 679999983 26899999999999997 8
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccccce-------eeeeeeccCchhhHhhhccCCch-h
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVDF-------FANVNITAGGDKAVLMKTLDTYP-L 152 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~-------~a~~~~~~~g~~~~~~~~~~gy~-~ 152 (708)
.+.+.|.+.++.++.. +.+ ...-.|.. ..++...|+. -.||+|||||||| +||||+ .
T Consensus 288 h~~~~~~~~e~~~~~~----~vv---~~~~~p~~----~~~~~ply~~~~~a~~~g~kVvLSGeGADE----lFgGY~~~ 352 (542)
T COG0367 288 HHEIILTNEELLNALP----EVV---KALDTPGG----MAASIPLYLLSRKARAEGEKVVLSGEGADE----LFGGYPPY 352 (542)
T ss_pred cEEEeecHHHHHHHHH----HHH---hhcCCCCc----ccchhHHHHHHHhhhhcCcEEeecCccHHH----HhcCCchh
Confidence 8998888888776632 222 23333442 2222233221 1289999999999 999993 2
Q ss_pred hh------hh-----HHHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCCc----h---hhhHHHHHHHh
Q psy18015 153 FC------DN-----VAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPPS----V---GDKLLLRLLAW 214 (708)
Q Consensus 153 ~~------~~-----~~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~~----~---~~k~~lr~~a~ 214 (708)
+. .. ..++.++...|+.||+++++.+++|.|+||++ .+++.+++++|+. . ..|.+++.++.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld-~~~~~l~l~~~~~~~i~~~~~m~~~le~Rvpf 431 (542)
T COG0367 353 SRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLD-RELVDLALKIPPEHKLNRDRSMAKKLERRVPF 431 (542)
T ss_pred hhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchH-HHHHHHHhcCCcccccchhhhhhhhhheeccc
Confidence 21 11 22366677777899999999999999999999 9999999998862 1 24667777777
Q ss_pred hcC--ce-eeecchhhhhccCccccccccC
Q psy18015 215 KLG--LK-VAASLPKRALQFGSRIANSREK 241 (708)
Q Consensus 215 ~~g--i~-~~~~~~k~A~q~gs~i~~~~~~ 241 (708)
-.+ ++ .+....|++.|+|+++.|+...
T Consensus 432 ~~~~~l~~~i~~~~K~~~~~gk~~lr~~~~ 461 (542)
T COG0367 432 SDGVELPEEIPWREKIAFGYGKGILRIAYE 461 (542)
T ss_pred ccchhhHhhCChhhhhhcCCcchhhHhhhh
Confidence 777 55 4667789999999988877443
No 48
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.56 E-value=2.1e-15 Score=170.91 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=120.9
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
||||++||++++++.+. .+|..++|+|++.. +..++..+++..++|.
T Consensus 263 GlDSs~iaa~a~~~~~~-~~~~~~t~~~~~~~----------------------------~~~E~~~A~~vA~~lg---- 309 (467)
T TIGR01536 263 GLDSSLVAAIARREAPR-GPVHTFSIGFEGSP----------------------------DFDESPYARKVADHLG---- 309 (467)
T ss_pred ChhHHHHHHHHHHhcCC-CCceEEEEecCCCC----------------------------CCChHHHHHHHHHHhC----
Confidence 89999999999998653 57999999998511 1334555665555553
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccccc------ee-eeeeeccCchhhHhhhccCCchhh
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVD------FF-ANVNITAGGDKAVLMKTLDTYPLF 153 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~------~~-a~~~~~~~g~~~~~~~~~~gy~~~ 153 (708)
-.+ ..|++..++.......+ + +.....+........+. -. .+|++||+|+|| +||||++|
T Consensus 310 -~~~--~~i~~~~~~~~~~~~~~---v---~~~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDE----lf~GY~~~ 376 (467)
T TIGR01536 310 -TEH--HEVLFSVEEGLDALPEV---I---YHLEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADE----LFGGYLYF 376 (467)
T ss_pred -CcC--eEEECCHHHHHHHHHHH---H---HhhCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchh----cccCchhh
Confidence 233 44455444321111111 1 11111221111111111 11 589999999999 99999988
Q ss_pred hhh-----H------HHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC-----chhhhHHHHHHHhhcC
Q psy18015 154 CDN-----V------AELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP-----SVGDKLLLRLLAWKLG 217 (708)
Q Consensus 154 ~~~-----~------~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~-----~~~~k~~lr~~a~~~g 217 (708)
.+. + .++......|+-|+||+.|++|+|+|+|||| ..+|+|+.+||. +..+|++||++++...
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD-~~lv~~a~~lp~~~k~~~~~~K~iLR~a~~~~l 455 (467)
T TIGR01536 377 HEAPAAEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLD-HELVEYALSIPPEMKLRDGKEKYLLREAFEGYL 455 (467)
T ss_pred hhccccHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCC-HHHHHHHHhCCHHHhcCCCCcHHHHHHHHhhhC
Confidence 632 1 1355567778889999999999999999999 999999999996 3457999999999985
Q ss_pred ceeeecchhh
Q psy18015 218 LKVAASLPKR 227 (708)
Q Consensus 218 i~~~~~~~k~ 227 (708)
...+..++|.
T Consensus 456 P~~i~~R~K~ 465 (467)
T TIGR01536 456 PEEILWRKKE 465 (467)
T ss_pred CHHHhcCCCC
Confidence 5567777664
No 49
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=99.51 E-value=7.4e-15 Score=154.07 Aligned_cols=183 Identities=21% Similarity=0.255 Sum_probs=121.5
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
||||++||+++++..+. +|..+++.|+++ .++|+..+++..++|.
T Consensus 25 GlDSs~va~~~~~~~~~--~~~~~~~~~~~~-----------------------------~~~e~~~a~~~a~~l~---- 69 (269)
T cd01991 25 GLDSSLVAALAARLLPE--PVKTFSIGFGFE-----------------------------GSDEREYARRVAEHLG---- 69 (269)
T ss_pred cHHHHHHHHHHHHhhCC--CCceEEEeeCCC-----------------------------CCChHHHHHHHHHHhC----
Confidence 89999999999998544 388888888763 2456777777777775
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCcccc-------ceeeeeeeccCchhhHhhhccCCchhh
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVV-------DFFANVNITAGGDKAVLMKTLDTYPLF 153 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~-------~~~a~~~~~~~g~~~~~~~~~~gy~~~ 153 (708)
-.+..|.++. ++.......+ + +.....+........+ ..-++|+|||+|+|| +|+||.+|
T Consensus 70 -~~~~~~~~~~--~~~~~~~~~~---~---~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~De----lf~Gy~~~ 136 (269)
T cd01991 70 -TEHHEVEFTP--ADLLAALPDV---I---WELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADE----LFGGYPRY 136 (269)
T ss_pred -CcceEEEcCH--HHHHHHHHHH---H---HHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccc----cccChHHH
Confidence 3355555542 2211100000 0 1111111111000000 011489999999999 99999877
Q ss_pred hhhH-------------------------HH-----HHHHhhhc--------------------cccccccccCCCceee
Q psy18015 154 CDNV-------------------------AE-----LTKLLTQS--------------------VEKRVRTQPSHCVQCV 183 (708)
Q Consensus 154 ~~~~-------------------------~~-----~~~~~~~n--------------------~~rd~~~~~~~~~~~~ 183 (708)
.... .+ +.++...| +.++|++.|.+|+|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R 216 (269)
T cd01991 137 RRAPLARRRRRRLLGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVR 216 (269)
T ss_pred HHHHHHhhccccCcchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhccccc
Confidence 5311 01 11222222 6789999999999999
Q ss_pred eccCCCccceeecccCCC-----chhhhHHHHHHHhhcCceeeecchhhhhccC
Q psy18015 184 EPCGHCKTGVLFSDDLPP-----SVGDKLLLRLLAWKLGLKVAASLPKRALQFG 232 (708)
Q Consensus 184 ~p~l~~~~~~~~~~~~p~-----~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~g 232 (708)
+|||| ..+|+|++++|. +..+|++||.++.......+..++|++.|++
T Consensus 217 ~PflD-~~lve~~~~lP~~~k~~~~~~K~iLR~a~~~~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 217 VPFLD-HRLVEFALSLPPELKIRGGREKYLLREAAAGLLPDEILWRPKRGFQVP 269 (269)
T ss_pred CCCCC-HHHHHHHHcCCHHHhcCCCCchHHHHHHHHhhCCHHHHcCCCCCCCCC
Confidence 99999 999999999996 3467999999999986778889999987753
No 50
>KOG1268|consensus
Probab=99.48 E-value=3.9e-14 Score=153.34 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEecCC-----------cc-------------------eeeEeeEEEe-cCCC--CCCC
Q psy18015 244 APIIDVCQEAIQRRGPDSFKQLTISED-----------CA-------------------TCTFLASVRW-TQGV--TISP 290 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGpD~~g~~~~~~~-----------~~-------------------~~~~~g~~l~-~~g~--~~~~ 290 (708)
.+++.+.+++|+|||+||+|+...+.+ .+ .-++++|+|| |+|. ..|.
T Consensus 20 id~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~~Ns 99 (670)
T KOG1268|consen 20 IDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNC 99 (670)
T ss_pred HHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeeeeeeeeeehhhcCCCCccCC
Confidence 467888999999999999999875432 00 1257899999 9996 4889
Q ss_pred CCceecCC--cEEEEEEEEecCchhhccccC-----CCCCChHHHHHHHHHH----hh--------HHHhhhhccCCeEE
Q psy18015 291 QPLEDVDG--NVLLWNGDVYNFTSEDNKTIE-----STSESDSLQVLQRFAS----HG--------VLKTLKHIQGPYSF 351 (708)
Q Consensus 291 QP~~~~~g--~v~v~NGeIyN~~~el~~~l~-----~~s~sDtevl~~~~~~----~g--------~~~~l~~L~G~fA~ 351 (708)
||+.+..+ .++||||.|.||+ +||..|. |.|+||||++..++.. .+ ...++++++|.||+
T Consensus 100 HP~rSd~~n~FvVVHNGIITNyk-~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFal 178 (670)
T KOG1268|consen 100 HPHRSDPSNEFVVVHNGIITNFK-ELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGL 178 (670)
T ss_pred CCCcCCCCCcEEEEEcCeeccHH-HHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHH
Confidence 99987654 3799999999999 8876543 9999999999988865 33 45678999999999
Q ss_pred EEEECCC-CEEEEEeCCCCCcceEEEEeC
Q psy18015 352 IFLDKKN-KQLWFGKDPIGRHSLLLKCTP 379 (708)
Q Consensus 352 ~i~d~~~-~~l~l~RD~~G~kPLyy~~~~ 379 (708)
++-.+.- +++...|+- +||..+...
T Consensus 179 vfkS~hfP~e~Va~Rrg---SPlliGvKs 204 (670)
T KOG1268|consen 179 LFKSSHFPGEVVAARKG---SPLLIGVKS 204 (670)
T ss_pred HHHhhcCCcceeeeccC---Ccceeeecc
Confidence 9865543 789999998 999888653
No 51
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.36 E-value=6.3e-12 Score=130.81 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=85.0
Q ss_pred eEeeEEEe-cCCC--C-CCCCCceecCCc-EEEEEEEEecCch----hhcccc------CCCCCChHHHHHHHHHHh---
Q psy18015 275 TFLASVRW-TQGV--T-ISPQPLEDVDGN-VLLWNGDVYNFTS----EDNKTI------ESTSESDSLQVLQRFASH--- 336 (708)
Q Consensus 275 ~~~g~~l~-~~g~--~-~~~QP~~~~~g~-v~v~NGeIyN~~~----el~~~l------~~~s~sDtevl~~~~~~~--- 336 (708)
++++|+|+ +.|. . .|.|||.. |. +++|||.|.|+.+ +|+..+ .|.+.||+|++++++.+.
T Consensus 84 ~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~ 161 (251)
T TIGR03442 84 CVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLE 161 (251)
T ss_pred eEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhh
Confidence 67899876 7773 3 69999985 45 6999999999962 344433 278999999999888652
Q ss_pred --------hHHHhhhhccCC-------eEEEEEECCCCEEEEEeCCCCCcceEEEEeCCEEEEEccC
Q psy18015 337 --------GVLKTLKHIQGP-------YSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVA 388 (708)
Q Consensus 337 --------g~~~~l~~L~G~-------fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~ 388 (708)
++.++++.+.|. |+|++.| .+++++.||+. ||||+..++.++||||.
T Consensus 162 ~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~~~~~vvASEp 223 (251)
T TIGR03442 162 NDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKDPEGVIVASEP 223 (251)
T ss_pred cCCchHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEcCCEEEEEeCC
Confidence 234567777877 9999998 47999999994 99999988899999985
No 52
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.31 E-value=2.1e-11 Score=127.69 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=79.4
Q ss_pred eEeeEEEe-cCCC--CCCCCCceecCCcEEEEEEEEecCchhhcccc------CCCCCChHHHHHHHHHH----------
Q psy18015 275 TFLASVRW-TQGV--TISPQPLEDVDGNVLLWNGDVYNFTSEDNKTI------ESTSESDSLQVLQRFAS---------- 335 (708)
Q Consensus 275 ~~~g~~l~-~~g~--~~~~QP~~~~~g~v~v~NGeIyN~~~el~~~l------~~~s~sDtevl~~~~~~---------- 335 (708)
.++||+|+ +.|. ..+.|||... +.+++|||.|+|+. +++..+ .+.+.||+|++++++.+
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~~-~~~~~HNG~i~n~~-~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~ 159 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTRG-RWLFAHNGQLDGFR-LLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDP 159 (257)
T ss_pred EEEEEEecCCCCCCccccCCCcccC-CEEEEeCCccCCcc-hhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcch
Confidence 67899876 7775 3789999874 34699999999998 776543 27899999999998843
Q ss_pred ----hhHHHhhhhcc-----CCeEEEEEECCCCEEEEEeCCCCCcceEEEEeC
Q psy18015 336 ----HGVLKTLKHIQ-----GPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTP 379 (708)
Q Consensus 336 ----~g~~~~l~~L~-----G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~~ 379 (708)
.++.++++.|. |.|+|++.|. ++++++||+. .+||||....
T Consensus 160 ~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~ 209 (257)
T cd01908 160 AELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRR 209 (257)
T ss_pred HHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEecc
Confidence 23455678888 6888888774 7899999998 8899999863
No 53
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.23 E-value=4.6e-12 Score=147.26 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=51.0
Q ss_pred cccccccccCCCceeeeccCCCccceeecccCCCc----hhhhHHHHHHHhhcCceeeecchhh
Q psy18015 168 VEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPPS----VGDKLLLRLLAWKLGLKVAASLPKR 227 (708)
Q Consensus 168 ~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~~----~~~k~~lr~~a~~~gi~~~~~~~k~ 227 (708)
|.|-||+.|++|+|+|+|||| ..+|+|+.+||.. .+.|++||+++..+-...+..++|+
T Consensus 457 L~~~Dr~sMa~svE~R~PFLD-~~lve~a~~lP~~~k~~~~~K~iLR~a~~~~lP~~i~~R~K~ 519 (589)
T TIGR03104 457 VKRVDNMTMAWGLEARVPFLD-HELVELAARIPPELKLADGGKGVLKEAARGVIPSEVIDRPKG 519 (589)
T ss_pred ccchhhhhhhccccccCCccC-HHHHHHHHhCCHHHhcCCCcCHHHHHHHhhhCCHHHhCCCCC
Confidence 678999999999999999999 9999999999962 1479999999999944567777763
No 54
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.23 E-value=8.4e-11 Score=128.87 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=83.7
Q ss_pred eEeeEEE-ecCCC-C-CCCCCceecCCcEEEEEEEEecCchhhccccC----------------------CCCCChHHHH
Q psy18015 275 TFLASVR-WTQGV-T-ISPQPLEDVDGNVLLWNGDVYNFTSEDNKTIE----------------------STSESDSLQV 329 (708)
Q Consensus 275 ~~~g~~l-~~~g~-~-~~~QP~~~~~g~v~v~NGeIyN~~~el~~~l~----------------------~~s~sDtevl 329 (708)
++++|.| +|.+. . ..+|||. +++|||||+|+. .++.++. ..+.||+|++
T Consensus 203 ~al~H~RfSTNT~p~W~~AqPfr-----~laHNGEInT~~-gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~l 276 (413)
T cd00713 203 FALVHSRFSTNTFPSWPLAQPFR-----YLAHNGEINTIR-GNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASL 276 (413)
T ss_pred EEEEEEecCCCCCCCcccCCcce-----eEEEcccccCHH-HHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHH
Confidence 5677865 67664 2 5789985 699999999998 4433220 3469999999
Q ss_pred HHHHHH---------hhHH-------------------------HhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEE
Q psy18015 330 LQRFAS---------HGVL-------------------------KTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLL 375 (708)
Q Consensus 330 ~~~~~~---------~g~~-------------------------~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy 375 (708)
.++++- .++. .+++.++|.|++++.| .+.++++|||.|.|||+|
T Consensus 277 d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~d--g~~i~a~rDrnGlRPl~~ 354 (413)
T cd00713 277 DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTD--GRQVGASLDRNGLRPARY 354 (413)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEe--CCEEEEEeCCCCCcceEE
Confidence 998863 1111 4568899999999988 468999999999999999
Q ss_pred EEeCC-EEEEEccCcc
Q psy18015 376 KCTPT-SILVTSVAHK 390 (708)
Q Consensus 376 ~~~~~-~~~faSe~~a 390 (708)
+..++ .+++|||..+
T Consensus 355 ~~t~d~~~v~ASE~ga 370 (413)
T cd00713 355 VITKDGLLIMSSEVGV 370 (413)
T ss_pred EEECCCEEEEEeCCcc
Confidence 98765 7999999876
No 55
>KOG0571|consensus
Probab=99.15 E-value=2.1e-11 Score=129.94 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=109.0
Q ss_pred CchHHHHHHHhhhcCCC-----CCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHH
Q psy18015 1 GIDSTVIALLANQFVPS-----SEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQEL 75 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~-----~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el 75 (708)
||||.+||..|-+.+-. +.+..=.-|+|| ++||-+.||+--.-|
T Consensus 235 GLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle-------------------------------~SPDL~aarkVAd~i 283 (543)
T KOG0571|consen 235 GLDSSLVASIAARELKKAQAARGSKLHSFAIGLE-------------------------------DSPDLLAARKVADFI 283 (543)
T ss_pred CchHHHHHHHHHHHHHHhhhhcCCCceEEEecCC-------------------------------CChhHHHHHHHHHHh
Confidence 89999999999998743 223333333443 489999999988887
Q ss_pred HHhCCCCceeEEEecCchhh-HhhhcccchhhhhhcCC----CCCCCCCCCCccccceeeeeeeccCchhhHhhhccCCc
Q psy18015 76 TTLCPDRQWNFVEVNGLKEH-KWKRNISICPILKSYHP----KEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTY 150 (708)
Q Consensus 76 ~~~~p~r~~~~v~vnv~~~~-~~~~~~~i~~~~~~~~p----~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~gy 150 (708)
-...-.- -| + .|+ -.+=.+.| ..+..|-+ ++|.|=+- ....-..--||+|||.|+|| +||||
T Consensus 284 gt~Hhe~--~f---t--~qegidal~eVI-~hLETYDvttIRastpmyLl-sr~Ikk~gvkmvlSGEGsDE----ifggY 350 (543)
T KOG0571|consen 284 GTIHHEH--TF---T--IQEGIDALDEVI-YHLETYDVTTIRASTPMYLL-SRKIKKLGVKMVLSGEGSDE----IFGGY 350 (543)
T ss_pred CCcceEE--EE---c--HHHHHHHHHHHh-eeeeccccceEecCCchHHH-HHHHHhcceEEEEecCCchh----hhcce
Confidence 6443221 11 1 122 11212222 11222222 22233220 00000012588999999999 99999
Q ss_pred hhhh----------hhHHHHHHHhhhccccccccccCCCceeeeccCCCccceeecccCCC---------chhhhHHHHH
Q psy18015 151 PLFC----------DNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP---------SVGDKLLLRL 211 (708)
Q Consensus 151 ~~~~----------~~~~~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~---------~~~~k~~lr~ 211 (708)
-.+- |-+..+..|+.-..=|=++.+|+||.|+|+|||| +.-+++..+||| |-.+||+||.
T Consensus 351 lYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLD-k~F~~~~~sldPe~K~~k~~~~r~eK~vlrs 429 (543)
T KOG0571|consen 351 LYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLD-KRFLELAMSLDPEEKMIKPKEGRIEKYVLRS 429 (543)
T ss_pred eeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeeccccc-HHHHHHHhcCChhHhcCCcchhhHHHHHHHh
Confidence 8754 2244467788777558899999999999999999 888888888886 5678999997
Q ss_pred HHhh
Q psy18015 212 LAWK 215 (708)
Q Consensus 212 ~a~~ 215 (708)
+=.-
T Consensus 430 afd~ 433 (543)
T KOG0571|consen 430 AFDT 433 (543)
T ss_pred hcCC
Confidence 6543
No 56
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=99.15 E-value=3.8e-12 Score=131.58 Aligned_cols=177 Identities=21% Similarity=0.198 Sum_probs=107.4
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCCcccccccccccccccccccccccccCCCCCCCChHhhHHHHHHHHHhCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCP 80 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdr~t~~~~~~el~~~~p 80 (708)
|+||++||+++++ ....+|.++++.|+.... + |+.-+ +....++
T Consensus 27 GlDSs~i~~~~~~--~~~~~~~~~t~~~~~~~~---------------------------~--e~~~a-----~~va~~~ 70 (255)
T PF00733_consen 27 GLDSSAIAALAAR--QGGPPIKTFTIGFEDDDY---------------------------D--EREYA-----RKVARHL 70 (255)
T ss_dssp SHHHHHHHHHHHH--TCCSEEEEEEEECSSCC-------------------------------HHHHH-----HHHHHHH
T ss_pred ChhHHHHHHHHHH--hhCCceeEEEEEcCCCcc---------------------------h--hHHHH-----HHHhccc
Confidence 8999999999999 568899999999988420 1 34433 3344455
Q ss_pred CCceeEEEecCchhhHhhhcccchhhhhhcCCCCCCCCCCCCccccc---------eeeeeeeccCchhhHhhhccCCch
Q psy18015 81 DRQWNFVEVNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVD---------FFANVNITAGGDKAVLMKTLDTYP 151 (708)
Q Consensus 81 ~r~~~~v~vnv~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~---------~~a~~~~~~~g~~~~~~~~~~gy~ 151 (708)
+..|..|+++-..-..... ..+ -.+..|..+ ++ ...... --.+++|||+|+|| +||||.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~~p~~~-~~---~~~~~~~~~~~~a~~~~~~~~ltG~GgDe----lf~G~~ 138 (255)
T PF00733_consen 71 GLEHHEIELDPEDLLDNLE-DII---WRLDGPSPL-DD---PNSLPLYLLARLARENGIRVLLTGQGGDE----LFGGYP 138 (255)
T ss_dssp T-EEEEEEE-HHHHHHHHH-HHH---HHHT---HH-HH---HHHHHHHHHHHHHCHTTBSEEE--TTHHH----HHTTTT
T ss_pred ccccceeeechhhHHHhHH-HHH---HHHhCCccc-cc---ccccHHHHHHHhhcccceeEEEecccccc----ccccch
Confidence 5667777776321111000 000 111122210 00 000000 12468999999999 999996
Q ss_pred hhhhh---------HH-----------------------------HHHHHhhhccccccccccCCCceeeeccCCCccce
Q psy18015 152 LFCDN---------VA-----------------------------ELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGV 193 (708)
Q Consensus 152 ~~~~~---------~~-----------------------------~~~~~~~~n~~rd~~~~~~~~~~~~~p~l~~~~~~ 193 (708)
+|... .. ...++..+++.+.+++.+..|+|+|.|||| ..+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD-~~lv 217 (255)
T PF00733_consen 139 RYRPAYLRPLLLGRLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLD-RRLV 217 (255)
T ss_dssp -TTGGGCGHCCHHHHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGS-HHHH
T ss_pred HhHHHHhhhhhhhhhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecC-HHHH
Confidence 55421 00 123456667889999999999999999999 9999
Q ss_pred eecccCCC-----chhhhHHHHHHHhhcCceeeecchh
Q psy18015 194 LFSDDLPP-----SVGDKLLLRLLAWKLGLKVAASLPK 226 (708)
Q Consensus 194 ~~~~~~p~-----~~~~k~~lr~~a~~~gi~~~~~~~k 226 (708)
+|.+++|. +...|++||.+..++....+..++|
T Consensus 218 ~~~~~lP~~~~~~~~~~K~llR~a~~~~lP~~i~~r~K 255 (255)
T PF00733_consen 218 EFCLSLPPEQRFDGGIYKYLLREAMKDLLPPEILWRKK 255 (255)
T ss_dssp HHHHCB-GGGCCETTECTHHHHHHHTCCS-HHHHTS-S
T ss_pred HHHHhCCHHHHcCCCCCcHHHHHHHHhhCCHHHhcCCC
Confidence 99999997 3446999999999987777777655
No 57
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.13 E-value=2.3e-10 Score=110.22 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=74.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
.+.++||||+||+++++++.+... ..+.++++ +.... ...+...++.+++. +. ++..+.++.+++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~--~~v~~v~~--~~g~~-~~~~~~~~~~~a~~-g~-------~~~~~~~~~~~~~~ 69 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG--LNPLAVTV--DNGFN-SEEAVKNIKNLIKK-GL-------DLDHLVINPEEMKD 69 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC--CceEEEEe--CCCCC-CHHHHHHHHHHHHh-CC-------CeEEEecCHHHHHH
Confidence 478999999999999999877542 13444444 32111 12245777888887 54 45555666666544
Q ss_pred HHHHHHH-HhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHh
Q psy18015 578 QRHCHIK-DVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRT 646 (708)
Q Consensus 578 ~~~~~i~-~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~ 646 (708)
.....+. ....|.. .......+.+.+.+ ++.|++++++|+++||+|+||++|+.
T Consensus 70 ~~~~~l~~~~~~p~~----~~~~~~~~~~~~~A-----------~~~g~~~il~G~~~de~~~Gy~~~~~ 124 (154)
T cd01996 70 LQLARFKAKVGDPCW----PCDTAIFTSLYKVA-----------LKFGIPLIITGENPAQEFGGIREEEG 124 (154)
T ss_pred HHHHHHhcccCCCCh----hhhHHHHHHHHHHH-----------HHhCcCEEEeCcCHHHhccccccccc
Confidence 3222221 2233321 11122334455554 36689999999999999999998864
No 58
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.10 E-value=3.3e-10 Score=123.40 Aligned_cols=119 Identities=16% Similarity=0.041 Sum_probs=82.4
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
.+.+.||||+|||++++++++... .++ +.+.|+..- ....+...++.++++++. +|+.+.++.+++.+
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~g--l~~--l~vt~~~~~-~~e~~~~n~~~~~~~lgv-------d~~~i~~d~~~~~~ 128 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLG--LNP--LLVTVDPGW-NTELGVKNLNNLIKKLGF-------DLHTITINPETFRK 128 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhC--Cce--EEEEECCCC-CCHHHHHHHHHHHHHcCC-------CeEEEeCCHHHHHH
Confidence 478999999999999988855432 222 223333211 112245578889998887 78999999988877
Q ss_pred HHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccCCchh
Q psy18015 578 QRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTR 643 (708)
Q Consensus 578 ~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r 643 (708)
.+...+.....|.- .........+.+.| ++.|+++|++|+++||+||||..
T Consensus 129 l~~~~~~~~~~pc~----~c~~~~~~~l~~~A-----------~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 129 LQRAYFKKVGDPEW----PQDHAIFASVYQVA-----------LKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHHHHhccCCCch----hhhhHHHHHHHHHH-----------HHhCCCEEEeCCCHHHhcCCccc
Confidence 76677776666642 22233344566665 35689999999999999999874
No 59
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.08 E-value=6e-10 Score=121.38 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=76.5
Q ss_pred eEeeEEEe-cCCCC--CCCCCceecCCcEEEEEEEEecCchhhccccC-----CCC----------------CChHHHHH
Q psy18015 275 TFLASVRW-TQGVT--ISPQPLEDVDGNVLLWNGDVYNFTSEDNKTIE-----STS----------------ESDSLQVL 330 (708)
Q Consensus 275 ~~~g~~l~-~~g~~--~~~QP~~~~~g~v~v~NGeIyN~~~el~~~l~-----~~s----------------~sDtevl~ 330 (708)
++++|+|+ |.|.. .++|||. +++|||||-|+. .++..+. +.+ .||+|++.
T Consensus 197 ~~i~H~RysTnt~p~w~~AqPf~-----~laHNGeInt~~-~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~ 270 (361)
T PF00310_consen 197 FAIGHQRYSTNTFPSWENAQPFR-----ALAHNGEINTIR-GNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLD 270 (361)
T ss_dssp EEEEEEEE-SSSSCSGGGSSSEE-----EEEEEEEETTHH-HHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHH
T ss_pred EEEEEEecCCCCCCcchhcChHH-----HhhhccccccHH-HHHHHHHhhcccccCccccchhhcccccCCCCChHHHHH
Confidence 57889875 77753 6899987 899999999998 6554321 444 89999998
Q ss_pred HHHHH---hh-------------------------------HHHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEE
Q psy18015 331 QRFAS---HG-------------------------------VLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLK 376 (708)
Q Consensus 331 ~~~~~---~g-------------------------------~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~ 376 (708)
++++. .| ...+++.++|.|++++.|. +.++++|||.|.||+.|+
T Consensus 271 ~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~~ 348 (361)
T PF00310_consen 271 NLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRYG 348 (361)
T ss_dssp HHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EEE
T ss_pred HHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEEE
Confidence 77754 11 2345677999999999874 579999999999999999
Q ss_pred Ee-CCEEEEEccC
Q psy18015 377 CT-PTSILVTSVA 388 (708)
Q Consensus 377 ~~-~~~~~faSe~ 388 (708)
.+ ++.+++|||.
T Consensus 349 ~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 349 ITEDGLVVLASEA 361 (361)
T ss_dssp EETTCEEEEESST
T ss_pred EECCCEEEEEeCC
Confidence 99 6899999983
No 60
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=98.92 E-value=3.2e-09 Score=105.19 Aligned_cols=93 Identities=15% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCcEEEEEEEEecCchhhccccC-CCCCChHHHHHHHHHH------hhHHHhhhhccCCeEEEEEECCCCEEEEEeCCCC
Q psy18015 297 DGNVLLWNGDVYNFTSEDNKTIE-STSESDSLQVLQRFAS------HGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIG 369 (708)
Q Consensus 297 ~g~v~v~NGeIyN~~~el~~~l~-~~s~sDtevl~~~~~~------~g~~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G 369 (708)
|+...+|-|.|.|-. .|+.++. -++.++.-+++++|+. +-..++++.|+|.|||++||...+++++|||.-|
T Consensus 75 DdIfCiF~G~L~Nl~-~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G 153 (228)
T PF12481_consen 75 DDIFCIFLGSLENLC-SLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDG 153 (228)
T ss_pred CCEEEEEecchhhHH-HHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCC
Confidence 445689999999998 8988765 5777788888999986 3336789999999999999999999999999999
Q ss_pred CcceEEEEeC-CEEEEEccCcc
Q psy18015 370 RHSLLLKCTP-TSILVTSVAHK 390 (708)
Q Consensus 370 ~kPLyy~~~~-~~~~faSe~~a 390 (708)
.-||||+... |.++||++...
T Consensus 154 ~vpLyWGi~~DGslv~Sdd~~~ 175 (228)
T PF12481_consen 154 SVPLYWGIAADGSLVFSDDLEL 175 (228)
T ss_pred CcceEEEEeCCCCEEEcCCHHH
Confidence 9999999875 88999998765
No 61
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.90 E-value=9.2e-10 Score=129.45 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=51.5
Q ss_pred cccccccccCCCceeeeccCCCccceeecccCCC-----chhhhHHHHHHHhhcCceeeecchhhh
Q psy18015 168 VEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDLPP-----SVGDKLLLRLLAWKLGLKVAASLPKRA 228 (708)
Q Consensus 168 ~~rd~~~~~~~~~~~~~p~l~~~~~~~~~~~~p~-----~~~~k~~lr~~a~~~gi~~~~~~~k~A 228 (708)
+.+.||..|++|+|+|+|||| ..+|+|+++||. +...|+|||++++..-.+.+..++|+.
T Consensus 496 L~~~Dr~sMa~svE~R~PFLD-~~lve~a~slP~~~k~~~~~~K~iLR~a~~~~LP~~I~~R~K~g 560 (628)
T TIGR03108 496 LTKVDRASMAHGLEVRVPLLD-HRLVEWAAGLPPDLKLRGGEGKYLLKKAMRPYLPDDVLYRPKMG 560 (628)
T ss_pred ccccCccchhccccccCCCCC-HHHHHHHHhCCHHHhcCCCCchHHHHHHHHhhCCHHHhCCCCCC
Confidence 446799999999999999999 999999999996 445799999999999556787877655
No 62
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.59 E-value=1.9e-07 Score=100.44 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCC
Q psy18015 460 LFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNY 539 (708)
Q Consensus 460 ~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~ 539 (708)
+.++.++.+.+.|+++|++|+.++ +|++.||||+|||++|+++.+... +.+++++.++... .
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~~~--------------~VvVgLSGGIDSSvvaaLa~~a~g---~~~v~av~~~~~~-s 72 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLRRR--------------GVVLGLSGGIDSSVTAALCVRALG---KERVYGLLMPERD-S 72 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCC--------------CEEEEccCCHHHHHHHHHHHHhhC---CCcEEEEEecCCC-C
Confidence 457788999999999999998875 699999999999999999987642 2467888887521 2
Q ss_pred CCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 540 NVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 540 d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
...+...|+.+|++++. +|+.+++++
T Consensus 73 ~~~e~~~A~~lA~~LGi-------~~~~i~i~~ 98 (326)
T PRK00876 73 SPESLRLGREVAEHLGV-------EYVVEDITP 98 (326)
T ss_pred ChHHHHHHHHHHHHcCC-------CEEEEECch
Confidence 34578899999999998 788888865
No 63
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.44 E-value=1.6e-06 Score=90.40 Aligned_cols=84 Identities=23% Similarity=0.200 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCC
Q psy18015 462 CDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNV 541 (708)
Q Consensus 462 e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~ 541 (708)
++..+.+...|++.|++.- . ..+.+.||||+||+++++++.+..+ ...+.++++.+... ..
T Consensus 4 ~~~~~~l~~~l~~~~~~~~-~--------------~~vvv~lSGGiDSs~~a~la~~~~~-~~~v~~~~~~~~~~---~~ 64 (248)
T cd00553 4 EEIINALVLFLRDYLRKSG-F--------------KGVVLGLSGGIDSALVAALAVRALG-RENVLALFMPSRYS---SE 64 (248)
T ss_pred HHHHHHHHHHHHHHHHHhC-C--------------CCEEEeCCCcHHHHHHHHHHHHHhC-cccEEEEECCCCCC---CH
Confidence 4455555556666665431 1 2689999999999999999988753 14577777765431 23
Q ss_pred chhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 542 PDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 542 ~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
.|...|+.++++++. +|+.++++
T Consensus 65 ~~~~~a~~~a~~lgi-------~~~~i~i~ 87 (248)
T cd00553 65 ETREDAKELAEALGI-------EHVNIDID 87 (248)
T ss_pred HHHHHHHHHHHHhCC-------eEEEeccH
Confidence 578899999999997 67776653
No 64
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.41 E-value=1.6e-06 Score=90.61 Aligned_cols=85 Identities=24% Similarity=0.250 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCC
Q psy18015 462 CDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNV 541 (708)
Q Consensus 462 e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~ 541 (708)
+.+.+++.+.|+++|+.+..+ .|.+.||||+||+++++++.+... ...+.+.+........
T Consensus 3 ~~~~~~l~~~l~~~v~~~~~~---------------~V~vglSGGiDSsvla~l~~~~~~----~~~~~~~~~~~~~~~~ 63 (250)
T TIGR00552 3 IKYVEEIEDFLRGYVQKSGAK---------------GVVLGLSGGIDSAVVAALCVEALG----EQNHALLLPHSVQTPE 63 (250)
T ss_pred hhHHHHHHHHHHHHHHHhCCC---------------CEEEECCCcHHHHHHHHHHHHhhC----CceEEEEECCccCCCH
Confidence 567788999999999988654 466779999999999999987642 1455665653221123
Q ss_pred chhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 542 PDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 542 ~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.|...|+++++.++. +|+.++++.
T Consensus 64 ~e~~~a~~~a~~lgi-------~~~~i~i~~ 87 (250)
T TIGR00552 64 QDVQDALALAEPLGI-------NYKNIDIAP 87 (250)
T ss_pred HHHHHHHHHHHHhCC-------eEEEEcchH
Confidence 478899999999987 677776654
No 65
>PRK14561 hypothetical protein; Provisional
Probab=98.34 E-value=2.8e-06 Score=85.29 Aligned_cols=106 Identities=25% Similarity=0.283 Sum_probs=72.3
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
+|+++||||+||+++++++.+.. .+.+.++.++. .+|..+|+.+|+++|. +|+.+.++.+. .+
T Consensus 2 kV~ValSGG~DSslll~~l~~~~----~v~a~t~~~g~-----~~e~~~a~~~a~~lGi-------~~~~v~~~~~~-~~ 64 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY----DVELVTVNFGV-----LDSWKHAREAAKALGF-------PHRVLELDREI-LE 64 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC----CeEEEEEecCc-----hhHHHHHHHHHHHhCC-------CEEEEECCHHH-HH
Confidence 58999999999999999887651 23444443331 1367889999999998 78888888754 44
Q ss_pred HHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccc
Q psy18015 578 QRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADEL 637 (708)
Q Consensus 578 ~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDEl 637 (708)
...+.+.....|... ...+..++++.. +.|+.++.+|.=.|.+
T Consensus 65 ~~~~~~~~~~~P~~~----~~~l~~~~l~~~-------------a~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 65 KAVDMIIEDGYPNNA----IQYVHEHALEAL-------------AEEYDVIADGTRRDDR 107 (194)
T ss_pred HHHHHHHHcCCCCch----hHHHHHHHHHHH-------------HcCCCEEEEEecCCCc
Confidence 445666677777532 223333444432 2578889999888874
No 66
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.32 E-value=1.5e-06 Score=90.79 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=72.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
++.+.||||+||+++++++.+. +..+.++++.++. ....|...|++++++++. +|+.++++. +..
T Consensus 14 ~vlVa~SGGvDSs~ll~la~~~---g~~v~av~~~~~~---~~~~e~~~a~~~a~~lgi-------~~~ii~~~~--~~~ 78 (252)
T TIGR00268 14 KVLIAYSGGVDSSLLAAVCSDA---GTEVLAITVVSPS---ISPRELEDAIIIAKEIGV-------NHEFVKIDK--MIN 78 (252)
T ss_pred CEEEEecCcHHHHHHHHHHHHh---CCCEEEEEecCCC---CCHHHHHHHHHHHHHcCC-------CEEEEEcHH--HHH
Confidence 7999999999999999999876 3457788876543 122467788889999887 688777642 222
Q ss_pred HHHHHHHHhcCCCCccccchhhHHHHH-HHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhH
Q psy18015 578 QRHCHIKDVIYPLDTVLDDSLGCAVWF-AARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHR 645 (708)
Q Consensus 578 ~~~~~i~~l~~P~~~~~~~~~~~~~~~-l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~ 645 (708)
.+ ......+. .. .....|- +.+.+ ++.|++++++|+.+|+++.+++.+.
T Consensus 79 ~~---~~n~~~~c--~~---ck~~~~~~l~~~A-----------~~~g~~~I~~G~n~dD~~~~rpg~~ 128 (252)
T TIGR00268 79 PF---RANVEERC--YF---CKKMVLSILVKEA-----------EKRGYDVVVDGTNADDLFDHRPGYR 128 (252)
T ss_pred HH---HhCCCccc--ch---hhHHHHHHHHHHH-----------HHcCCCEEEECCCCcccccccHHHH
Confidence 11 11111110 00 0011121 23333 2568999999999999997765443
No 67
>PRK13980 NAD synthetase; Provisional
Probab=98.25 E-value=4.3e-06 Score=88.06 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCC
Q psy18015 460 LFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNY 539 (708)
Q Consensus 460 ~~e~~~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~ 539 (708)
+.+...+.+...|++.|++.-. ..+.+.||||+||+++++++.+..+ ...+.++++.+...
T Consensus 9 ~~~~~~~~l~~~l~~~v~~~g~---------------~~vvv~lSGGiDSsv~a~l~~~~~~-~~~v~av~~~~~~~--- 69 (265)
T PRK13980 9 DYEKVREIIVDFIREEVEKAGA---------------KGVVLGLSGGIDSAVVAYLAVKALG-KENVLALLMPSSVS--- 69 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHcCC---------------CcEEEECCCCHHHHHHHHHHHHHhC-ccceEEEEeeCCCC---
Confidence 3455666677777777765321 2688999999999999999988642 24577887765431
Q ss_pred CCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 540 NVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 540 d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
...|...|+.++++++. +|+.+++++
T Consensus 70 ~~~~~~~a~~la~~lgi-------~~~~i~i~~ 95 (265)
T PRK13980 70 PPEDLEDAELVAEDLGI-------EYKVIEITP 95 (265)
T ss_pred CHHHHHHHHHHHHHhCC-------CeEEEECHH
Confidence 23478889999999987 688777653
No 68
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.21 E-value=5.8e-06 Score=83.34 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=71.8
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHH
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQ 578 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~ 578 (708)
|.+++|||+||++++.++.+.. +..+.++++.++.. ...+...++.++++++. +|+.++++.... ..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~--~~~v~~v~vd~g~~---~~~~~~~~~~~a~~lgi-------~~~~~~~~~~~~-~~ 67 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL--GDRVLAVTATSPLF---PRRELEEAKRLAKEIGI-------RHEVIETDELDD-PE 67 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh--CCcEEEEEeCCCCC---CHHHHHHHHHHHHHcCC-------cEEEEeCCcccc-HH
Confidence 4689999999999999998764 22577777765431 22467888899999987 688887763211 11
Q ss_pred HHHHHHHhcCCCCccccchhhHHHHH-HHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhH
Q psy18015 579 RHCHIKDVIYPLDTVLDDSLGCAVWF-AARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHR 645 (708)
Q Consensus 579 ~~~~i~~l~~P~~~~~~~~~~~~~~~-l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~ 645 (708)
+... .+..... .....|. +.+.+ ++.|+.++++|+.+|+++++++...
T Consensus 68 ----~~~~-~~~~~~~---~r~~~~~~l~~~a-----------~~~g~~~I~~G~~~dD~~e~~~~~~ 116 (202)
T cd01990 68 ----FAKN-PPDRCYL---CKKALYEALKEIA-----------EELGLDVVLDGTNADDLGDYRPGLK 116 (202)
T ss_pred ----HhcC-CCCccch---hHHHHHHHHHHHH-----------HHCCCCEEEEcCccccCcccChHHH
Confidence 1110 1110001 1111111 23333 2568999999999999998876543
No 69
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.17 E-value=1.7e-05 Score=80.87 Aligned_cols=160 Identities=19% Similarity=0.149 Sum_probs=91.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
++.+.+|||.|||++|.+|...+ +..+.++|+..+-. -..+.+-|+..|+++|. +|..+.++.-+ .
T Consensus 19 kv~vAfSGGvDSslLa~la~~~l--G~~v~AvTv~sP~~---p~~e~e~A~~~A~~iGi-------~H~~i~~~~~~-~- 84 (269)
T COG1606 19 KVVVAFSGGVDSSLLAKLAKEAL--GDNVVAVTVDSPYI---PRREIEEAKNIAKEIGI-------RHEFIKMNRMD-P- 84 (269)
T ss_pred eEEEEecCCccHHHHHHHHHHHh--ccceEEEEEecCCC---ChhhhhHHHHHHHHhCC-------cceeeehhhcc-h-
Confidence 78999999999999999998776 46788999986532 12257788899999997 67777664433 1
Q ss_pred HHHHHHHHhcCCCCccccchhhHHHHH-HHHhccccCCCCCCCCCCCCceEEEeccccccccCCchhhHhHHhcCCCChH
Q psy18015 578 QRHCHIKDVIYPLDTVLDDSLGCAVWF-AARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSNDWS 656 (708)
Q Consensus 578 ~~~~~i~~l~~P~~~~~~~~~~~~~~~-l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFgGY~r~~~~~~~~~~~~~ 656 (708)
...+.-..+. .+.- -..|- +-+.+ .+.|..||++|--||++|++=|-++......- +.
T Consensus 85 ---~~~~n~~~rC--Y~CK---~~v~~~l~~~a-----------~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~gi--~s 143 (269)
T COG1606 85 ---EFKENPENRC--YLCK---RAVYSTLVEEA-----------EKRGYDVVADGTNASDLFDYRPGLRALKELGI--RS 143 (269)
T ss_pred ---hhccCCCCcc--hHHH---HHHHHHHHHHH-----------HHcCCCEEEeCCcHHHhcCCCcchhhHHhcCC--CC
Confidence 1122211111 0000 01111 12222 25689999999999999985444443221110 11
Q ss_pred HHHHH--HHHHHHHhh-hccccchhHHHHhcCceeeccCC
Q psy18015 657 ALRAQ--LEHEVLNIS-RRNLGRDNRVVCDHGRQSRTPFL 693 (708)
Q Consensus 657 ~L~~e--l~~dl~~l~-~~~L~r~DR~sma~glE~R~PFL 693 (708)
.+.+- -..++..+. ..+|.--|+-+|++. -.|.||-
T Consensus 144 Pl~e~gitk~eIre~a~~lgl~~~~kp~~aCl-~sr~p~g 182 (269)
T COG1606 144 PLAEFGITKKEIREIAKSLGLPTWDKPSMACL-ASRIPYG 182 (269)
T ss_pred hHHHhCCcHHHHHHHHHHcCCCcccCcccccc-ccccCCC
Confidence 11100 012232222 234555666666665 3466663
No 70
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.05 E-value=1.8e-05 Score=97.74 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=74.6
Q ss_pred eEeeEEE-ecCCC-C-CCCCCceecCCcEEEEEEEEecCch-----hhcc-cc------------C--CCCCChHHHHHH
Q psy18015 275 TFLASVR-WTQGV-T-ISPQPLEDVDGNVLLWNGDVYNFTS-----EDNK-TI------------E--STSESDSLQVLQ 331 (708)
Q Consensus 275 ~~~g~~l-~~~g~-~-~~~QP~~~~~g~v~v~NGeIyN~~~-----el~~-~l------------~--~~s~sDtevl~~ 331 (708)
+++.|.| +|.-. . ..+||| ++++|||||--+.- +.|+ .+ + -...||++.+-.
T Consensus 214 ~al~HsRFSTNT~PsW~~AqPF-----R~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lDn 288 (1485)
T PRK11750 214 ICVFHQRFSTNTLPRWPLAQPF-----RYLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLDN 288 (1485)
T ss_pred EEEEECcCCCCCCCCCCcCCCc-----eeeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHHH
Confidence 3556654 54332 2 468997 37899999984430 1121 10 0 245789998876
Q ss_pred HHHH-------------------hh--------H-------HHhhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEE
Q psy18015 332 RFAS-------------------HG--------V-------LKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKC 377 (708)
Q Consensus 332 ~~~~-------------------~g--------~-------~~~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~ 377 (708)
.++- |. . ...++-++|.|++++.| .+.+++.|||.|.|||.|+.
T Consensus 289 ~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPlr~~~ 366 (1485)
T PRK11750 289 MLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPARYVI 366 (1485)
T ss_pred HHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccceEEE
Confidence 6552 11 0 12455679999999998 57999999999999998777
Q ss_pred e-CCEEEEEccCcc
Q psy18015 378 T-PTSILVTSVAHK 390 (708)
Q Consensus 378 ~-~~~~~faSe~~a 390 (708)
. ++.+++|||..+
T Consensus 367 ~~d~~~i~aSE~g~ 380 (1485)
T PRK11750 367 TKDKLITLASEVGI 380 (1485)
T ss_pred EcCCEEEEEeccee
Confidence 6 467999999876
No 71
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.00 E-value=2.2e-05 Score=77.47 Aligned_cols=117 Identities=15% Similarity=0.022 Sum_probs=68.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC---CCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS---SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRE 574 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~---~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d 574 (708)
+|.+.+|||.||++++.++.+.... +-++.++++.+.... ....+..+++.++++++. +++.+.++. +
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~i-------~~~~~~~~~-~ 71 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG-YRDESLEVVERLAEELGI-------ELEIVSFKE-E 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC-CcHHHHHHHHHHHHHcCC-------ceEEEehhh-h
Confidence 3789999999999999998875421 124666666654311 122466788888888886 677776652 2
Q ss_pred HHHHHHHHHHHhcCCCCccccch-hhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccccC
Q psy18015 575 LEDQRHCHIKDVIYPLDTVLDDS-LGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLG 639 (708)
Q Consensus 575 ~~~~~~~~i~~l~~P~~~~~~~~-~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElFg 639 (708)
+.. ......+........ .-.-.+.+.+.+ ++.++.++++|+.+|++..
T Consensus 72 ~~~-----~~~~~~~~~~~~~~~c~~~r~~~l~~~a-----------~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 72 YTD-----DIEVKKRGGKSPCSLCGVLRRGLLNKIA-----------KELGADKLATGHNLDDEAE 121 (185)
T ss_pred cch-----hhhhhccCCCCCCCccHHHHHHHHHHHH-----------HHcCCCEEEEcCChHHHHH
Confidence 200 000111111111111 112223344444 3568999999999998863
No 72
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=97.95 E-value=4.8e-05 Score=80.37 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=50.7
Q ss_pred eEeeEEEe-cCCC--CCCCCCceecC--Cc-EEEEEEEEecCchhhc-cccCCCCCChHHHHHHHHHH-----h------
Q psy18015 275 TFLASVRW-TQGV--TISPQPLEDVD--GN-VLLWNGDVYNFTSEDN-KTIESTSESDSLQVLQRFAS-----H------ 336 (708)
Q Consensus 275 ~~~g~~l~-~~g~--~~~~QP~~~~~--g~-v~v~NGeIyN~~~el~-~~l~~~s~sDtevl~~~~~~-----~------ 336 (708)
.+++|+|. +.|. ..|.|||.... +. +++|||.|.++. .++ ..+...+.||+|.+..++-. .
T Consensus 73 ~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~-~~~~~~~~~~G~TDSE~~F~lll~~l~~~~~~~~~~ 151 (271)
T PF13230_consen 73 LFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFE-DILDDRYQPVGTTDSEHAFCLLLDQLRDRGPDAPPA 151 (271)
T ss_dssp EEEEEE------------SS-EE----ETTEEEEEEEEETTGG-GGHHHHHT--S--HHHHHHHHHHHTTTTT-HH--HH
T ss_pred EEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCcccccc-ccCccccccCCCcHHHHHHHHHHHHHHHhCCccccc
Confidence 57889875 6665 37899998542 34 689999999987 433 22224688999999988743 1
Q ss_pred ------hHHHhhhhcc--CCeEEEEEECCCCEEEEEeCCCCCcceEEEEe
Q psy18015 337 ------GVLKTLKHIQ--GPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT 378 (708)
Q Consensus 337 ------g~~~~l~~L~--G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~ 378 (708)
.+.+.++.+. |.+.|++.| .+.|++.|+ .+|||...
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~N~~lsD--G~~l~a~~~----~~l~~~~r 195 (271)
T PF13230_consen 152 LEELFEALRELAKEINEYGSLNFLLSD--GERLFAHRY----TSLYYLTR 195 (271)
T ss_dssp HHHHHHHHHHHHHS-SSSEEEEEEEE---SS-EEEEEE----ESSS----
T ss_pred HHHHHHHHHHHHHHhccCeeEEEEEEC--CceEEEEEc----CCeeEEec
Confidence 1123334444 678888887 468999998 56887743
No 73
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=97.94 E-value=4.7e-05 Score=77.40 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=45.4
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+-++||||+||+++++.+.+.. ..+.++++.|+.. ..-|...|++++++++.. +|+.++++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~---~~v~al~~~YGq~---~~~El~~a~~i~~~l~v~------~~~~i~l~ 62 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG---YEVYALTFDYGQR---HRRELEAAKKIAKKLGVK------EHEVIDLS 62 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH----SEEEEEEEESSST---TCHHHHHHHHHHHHCT-S------EEEEEE-C
T ss_pred EEEEeCCCHHHHHHHHHHHHcC---CeEEEEEEECCCC---CHHHHHHHHHHHHHhCCC------CCEEeeHH
Confidence 4689999999999999888763 4688888888753 346889999999999863 57778776
No 74
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.91 E-value=1.2e-05 Score=77.15 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=82.3
Q ss_pred CCCceecCCc-EEEEEEEEecCchhhcc---ccC--CCCCChHHHHHHHHHHhhHHHhhhhccCCeEEEEEECCCCEEEE
Q psy18015 290 PQPLEDVDGN-VLLWNGDVYNFTSEDNK---TIE--STSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWF 363 (708)
Q Consensus 290 ~QP~~~~~g~-v~v~NGeIyN~~~el~~---~l~--~~s~sDtevl~~~~~~~g~~~~l~~L~G~fA~~i~d~~~~~l~l 363 (708)
-|-+.++.+. +++ |.|||.. -|++ ..+ ...-+|.|+|..++.+-| ..++.--+|+|.|.+-|+ +++|.+
T Consensus 41 ~qk~~~~~~tayLI--GsiyNr~-~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-~~aLsLAEGdfcffiE~k-ng~L~l 115 (201)
T PF09147_consen 41 FQKMRFERGTAYLI--GSIYNRR-FLRGLAGMWEGHAYVLNDAELLYTIFTRLG-NSALSLAEGDFCFFIEDK-NGELTL 115 (201)
T ss_dssp EEEEEETTEEEEEE--S--S-HH-HHHHHHTTT-GGGGG--HHHHHHHHHHHH--GGGGGG--SSEEEEEEET-TSEEEE
T ss_pred eeEEEecCccEEEE--EEeccHH-HHHHhhheeeccceeeccHHHHHHHHHHhh-hhhhhhhcCceEEEEecC-CCcEEE
Confidence 4555555444 344 9999987 5543 332 356799999999999998 889999999999999886 689999
Q ss_pred EeCCCCCcceEEEEeCCEEEEEccCccccccceecCCCceEEecCCCCcceecccCCCCCCCCCCCCceecCCceEEEEe
Q psy18015 364 GKDPIGRHSLLLKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNIT 443 (708)
Q Consensus 364 ~RD~~G~kPLyy~~~~~~~~faSe~~a~~~~l~~~p~~~~~~~d~~~~al~~~~~~~~~~~~T~~~~I~~LppG~~l~~~ 443 (708)
..|.-|..|.|....+ ..|+...+|- +..+...+.+.+..+.... .....+..-|+.+++.++.||++-.+.
T Consensus 116 ~Tds~G~~pv~lV~~~-~~WiTn~LK~----V~~~eg~~a~df~~E~~v~---q~~l~~d~~sPi~na~RlkPGsin~l~ 187 (201)
T PF09147_consen 116 ITDSRGFNPVYLVQSK-FIWITNSLKL----VSAVEGEGAFDFMPESLVI---QSSLRPDNFSPIKNAQRLKPGSINVLT 187 (201)
T ss_dssp EE-SSSSS-EEEEESS-SEEEES-HHH----HHHHH-TTSS-B--HHHHS---S-S---TT--SBTTEEEE-SSEEEEEE
T ss_pred EecCCCCceEEEEecC-ceEEecceEE----EEEeeccccccccchhHHH---hhhccCCCcCccccceecCCCceEEEE
Confidence 9999999999887765 5666666553 2111111122222222111 111233445788999999999987775
Q ss_pred cC
Q psy18015 444 AG 445 (708)
Q Consensus 444 ~~ 445 (708)
.+
T Consensus 188 ~d 189 (201)
T PF09147_consen 188 FD 189 (201)
T ss_dssp E-
T ss_pred ec
Confidence 44
No 75
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=97.85 E-value=7.5e-05 Score=76.89 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=47.3
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccc-eEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWN-FVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~-h~~v~v~ 571 (708)
++.++||||+||+++++++.+. +..+.++++.++.. ...|...|+.+|++++. + |+.++++
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~---~~~v~alt~dygq~---~~~El~~a~~ia~~~gi-------~~h~vid~~ 64 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQ---YDEVHCVTFDYGQR---HRAEIDVARELALKLGA-------RAHKVLDVT 64 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhc---CCeEEEEEEEeCCC---CHHHHHHHHHHHHHcCC-------CeEEEEecc
Confidence 5899999999999999988654 23577888877642 13478999999999987 4 7776665
No 76
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=97.83 E-value=0.00012 Score=80.19 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=71.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCC-------CCCchhHHHHHHHHHhhhcCCCCccceEEEec
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQN-------YNVPDRLTGLSSLQELTTLCPDRQWNFVEINI 570 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~-------~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v 570 (708)
+|++.+|||+||+++++++.+. +..+.++++.+....+ +...|...|+++|++++. +|+.+++
T Consensus 2 kVlValSGGvDSsvla~lL~~~---G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgI-------p~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ---GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGI-------PHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc---CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCC-------cEEEEeC
Confidence 6899999999999999999875 3458888887643110 123467888999999987 7888888
Q ss_pred ChhHHHHHHHHHHHHh---cCCCCccccchhhHHHH-HHHHhccccCCCCCCCCCCCCceEEEecccccccc
Q psy18015 571 SRRELEDQRHCHIKDV---IYPLDTVLDDSLGCAVW-FAARGVGRLGSCDYTSPRSEERRVLLLGMGADELL 638 (708)
Q Consensus 571 ~~~d~~~~~~~~i~~l---~~P~~~~~~~~~~~~~~-~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElF 638 (708)
..+-..+.+...+... ..|....+.. ...-| .+.+.+ ++.|+..+.||+=+|-..
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~--r~ik~~~l~~~A-----------~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCN--KEIKFKAFLEYA-----------RELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhh--HHHHHHHHHHHH-----------HHCCCCEEEeeeeccccc
Confidence 5543323322223221 1232111111 01111 123333 256899999999887643
No 77
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=97.70 E-value=0.0003 Score=77.08 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=70.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCC-----CCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKN-----QNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~-----~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
+|++++|||+|||++|+++.+. +..+.++++..... ......|...|++++++++. +|+.++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI-------~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGI-------PHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCC-------cEEEEECcH
Confidence 3789999999999999999875 34566666543211 01123577889999999987 788888876
Q ss_pred hHHHHHHHHHHHHhc---CCCCccccchhhHHHH-HHHHhccccCCCCCCCCCCCCceEEEecccccccc
Q psy18015 573 RELEDQRHCHIKDVI---YPLDTVLDDSLGCAVW-FAARGVGRLGSCDYTSPRSEERRVLLLGMGADELL 638 (708)
Q Consensus 573 ~d~~~~~~~~i~~l~---~P~~~~~~~~~~~~~~-~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElF 638 (708)
+-..+.+...+.... .|....+... ...| .+.+.+ ++.|+..+.||+=||-..
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r--~ikf~~l~~~A-----------~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNK--EIKFGALLDYA-----------KKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhh--HHHHHHHHHHH-----------HHcCcCEEEECCcCCeee
Confidence 544343333333221 2221111110 1111 122323 256889999999888654
No 78
>PRK04527 argininosuccinate synthase; Provisional
Probab=97.66 E-value=0.00035 Score=77.12 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=54.7
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHH
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELE 576 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~ 576 (708)
.+|.+.+|||+|||+++.++.+. +..+.++++.++... ..|...|+++|+++|.. +|+.+++..+...
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~---G~~Viavt~d~gq~~---~~El~~a~~~A~~lG~~------~~~viD~~eef~e 70 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER---GYAVHTVFADTGGVD---AEERDFIEKRAAELGAA------SHVTVDGGPAIWE 70 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc---CCcEEEEEEEeCCCC---HHHHHHHHHHHHHcCCC------eEEEecCHHHHHH
Confidence 37999999999999999998774 456888888776421 34788899999999862 4888877655444
Q ss_pred HHHHHHH
Q psy18015 577 DQRHCHI 583 (708)
Q Consensus 577 ~~~~~~i 583 (708)
+.+...+
T Consensus 71 ~vi~p~i 77 (400)
T PRK04527 71 GFVKPLV 77 (400)
T ss_pred HHHHHHH
Confidence 4433333
No 79
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=97.65 E-value=0.00024 Score=77.97 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=48.2
Q ss_pred CcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 496 HCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 496 ~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+.+|.+.+|||+||+++|.++.+. +..+.++++.+.... ....|...|+++|++|+. +|+.++++
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~---G~~V~~v~~~~~~~~-~~~~d~~~a~~va~~LgI-------p~~vvd~~ 69 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA---GYEVTGVTFRFYEFN-GSTEYLEDARALAERLGI-------GHITYDAR 69 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc---CCeEEEEEEecCCCC-CChHHHHHHHHHHHHhCC-------CEEEEecH
Confidence 458999999999999999999875 345777777643211 122457788999999987 67877654
No 80
>PTZ00323 NAD+ synthase; Provisional
Probab=97.62 E-value=0.00093 Score=71.26 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=70.4
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-CCC-eeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-SEP-IDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRREL 575 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~~~-i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~ 575 (708)
.+.+.||||+||+++|+++.+.... ..+ ....++.-+.. ....+...|+.+++++|. +|+.+++++ +
T Consensus 48 ~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~--ss~~~~~~A~~la~~lGi-------~~~~idi~~--l 116 (294)
T PTZ00323 48 GCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIH--SSAWALNRGRENIQACGA-------TEVTVDQTE--I 116 (294)
T ss_pred cEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCC--CCHHHHHHHHHHHHHhCC-------cEEEEECcH--H
Confidence 6889999999999999999887532 112 23333333311 123467888899999987 788887764 3
Q ss_pred HHHHHHHHHHhcCCCCccccc------hhhHHHHHHHHhccccCCCCCCCCCCCCceEEEecc-ccccc-cCCchh
Q psy18015 576 EDQRHCHIKDVIYPLDTVLDD------SLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGM-GADEL-LGGYTR 643 (708)
Q Consensus 576 ~~~~~~~i~~l~~P~~~~~~~------~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~-GaDEl-FgGY~r 643 (708)
.+.+.+.+.......+..+.. .-....|.++... .+.|...++.|- =.||+ .-||.-
T Consensus 117 ~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~-----------~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 117 HTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLL-----------SQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred HHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHH-----------hhcCCCeEEECCCCchhhhHhchHh
Confidence 333333333221111100000 0012246665544 145677777777 67775 347754
No 81
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.55 E-value=0.00013 Score=73.90 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=49.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
+.-+.||||+||+++++.|.+.. ..+.+.|+.|... . .-|.+.|+.+|+.|+. .|+.++++.
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~---~ev~alsfdYGQr--h-~~Ele~A~~iak~lgv-------~~~iid~~~ 65 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG---YEVHALTFDYGQR--H-RKELEAAKELAKKLGV-------PHHIIDVDL 65 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC---CEEEEEEeeCCCC--c-HHHHHHHHHHHHHcCC-------CeEEechhH
Confidence 56789999999999999998863 5688888877652 3 5689999999999998 677776643
No 82
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=97.38 E-value=0.00029 Score=71.10 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=46.5
Q ss_pred EEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 500 GVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 500 gv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
.++||||+||++++.++.+. +.++.++++.++.. ...|...++.+++.++. +|+.++++
T Consensus 2 vv~lSGG~DSs~~~~~~~~~---g~~v~~~~~~~~~~---~~~e~~~a~~~a~~lgi-------~~~~~~~~ 60 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDE---GYEVHAITFDYGQR---HSRELESARKIAEALGI-------EHHVIDLS 60 (201)
T ss_pred EEEeccHHHHHHHHHHHHHc---CCcEEEEEEECCCC---CHHHHHHHHHHHHHhCC-------CeEEEech
Confidence 58999999999999998775 34688888877542 23477889999999987 67777765
No 83
>PRK00509 argininosuccinate synthase; Provisional
Probab=97.36 E-value=0.00094 Score=73.97 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=42.6
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
+|.+++|||+|||+++.++.+.. +..+.++++..+.. .|...|+++|+++|.
T Consensus 4 kVvva~SGGlDSsvla~~l~e~l--G~eViavt~d~Gq~-----~dle~a~~~A~~lGi 55 (399)
T PRK00509 4 KVVLAYSGGLDTSVIIKWLKETY--GCEVIAFTADVGQG-----EELEPIREKALKSGA 55 (399)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhh--CCeEEEEEEecCCH-----HHHHHHHHHHHHcCC
Confidence 79999999999999999887753 34688888876541 478889999999996
No 84
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.35 E-value=0.0011 Score=73.41 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=44.1
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
|.+++|||+|||+++.++.+.. +..+.++++.++.. ..+...+++.|+++|.. .|+.+++.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~--~~eV~av~~d~Gq~----~~~~e~a~~~a~~lG~~------~~~viD~~ 61 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG--GYEVIAVTADVGQP----EEEIEAIEEKALKLGAK------KHVVVDLR 61 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC--CCeEEEEEEECCCc----chhHHHHHHHHHHcCCC------EEEEeccH
Confidence 4689999999999999987753 23688888877642 12337888899999862 25655553
No 85
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.35 E-value=0.00084 Score=69.83 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=46.3
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.+-+.||||+||+++|+++.+... ...+.++.+- .. .....+...|..+++.|+. +|..+++++
T Consensus 20 ~vVvglSGGiDSav~A~La~~Alg-~~~v~~v~mp--~~-~~~~~~~~~A~~la~~lgi-------~~~~i~i~~ 83 (242)
T PF02540_consen 20 GVVVGLSGGIDSAVVAALAVKALG-PDNVLAVIMP--SG-FSSEEDIEDAKELAEKLGI-------EYIVIDIDP 83 (242)
T ss_dssp EEEEEETSSHHHHHHHHHHHHHHG-GGEEEEEEEE--SS-TSTHHHHHHHHHHHHHHTS-------EEEEEESHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhh-hccccccccc--cc-cCChHHHHHHHHHHHHhCC-------CeeccchHH
Confidence 678999999999999999988762 1345566653 21 1123467788999999987 788887753
No 86
>PRK13820 argininosuccinate synthase; Provisional
Probab=97.29 E-value=0.0017 Score=71.94 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCC-CeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSE-PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~-~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
.+|.+.+|||+||++++.++.+.. +- .+.++++.... ...|...+++.|+.++. +|+.+++.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~--g~~~Viav~vd~g~----~~~e~~~a~~~a~~lGi-------~~~vvd~~ 65 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY--GYDEVITVTVDVGQ----PEEEIKEAEEKAKKLGD-------KHYTIDAK 65 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc--CCCEEEEEEEECCC----ChHHHHHHHHHHHHcCC-------CEEEEeCH
Confidence 379999999999999999987653 22 57777776542 12367788899999887 67777664
No 87
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.29 E-value=0.0016 Score=64.18 Aligned_cols=34 Identities=35% Similarity=0.359 Sum_probs=27.2
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEK 535 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~ 535 (708)
+.++||||+||++++.++.+. +.++.++++.+..
T Consensus 2 vlv~~SGG~DS~~la~ll~~~---g~~v~av~~d~g~ 35 (177)
T cd01712 2 ALALLSGGIDSPVAAWLLMKR---GIEVDALHFNSGP 35 (177)
T ss_pred EEEEecCChhHHHHHHHHHHc---CCeEEEEEEeCCC
Confidence 689999999999999999875 3456777776543
No 88
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.001 Score=63.28 Aligned_cols=77 Identities=27% Similarity=0.314 Sum_probs=56.7
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHH
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELED 577 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~ 577 (708)
.+++++|||-|||+-|.++.++. -.+++.|+.|+-- +.-.+|++.|+.|+. +|..+.++.+-+.+
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg---yev~LVTvnFGv~-----d~~k~A~~tA~~lgF-------~h~vl~Ldr~ile~ 66 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG---YEVELVTVNFGVL-----DSWKYARETAAILGF-------PHEVLQLDREILED 66 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC---CCcEEEEEEeccc-----cchhhHHHHHHHhCC-------CcceeccCHHHHHH
Confidence 47999999999999999998873 4578888888752 345789999999986 78888887765555
Q ss_pred HHHHHHHHhcCCC
Q psy18015 578 QRHCHIKDVIYPL 590 (708)
Q Consensus 578 ~~~~~i~~l~~P~ 590 (708)
... .+-.-.+|.
T Consensus 67 A~e-m~iedg~P~ 78 (198)
T COG2117 67 AVE-MIIEDGYPR 78 (198)
T ss_pred HHH-HHHhcCCCc
Confidence 433 333334553
No 89
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0023 Score=69.24 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=48.4
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecC--CC--CCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEK--NQ--NYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~--~~--~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.+|.+.+|||+|||+.|+++.+.. ..+..+++-.-. .. .....|...|+.+|+.||. +|+.+++..
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGI-------p~~~vdf~~ 73 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGI-------PLYVVDFEK 73 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCC-------ceEEEchHH
Confidence 379999999999999999998863 456555553221 11 1223577889999999998 788888754
No 90
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.23 E-value=0.0013 Score=73.02 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=42.3
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
.+|.+++|||+|||+++.++.+.. +..+.++++..+.. ..|...+++.|+++|.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~--G~eViav~id~Gq~----~~el~~a~~~A~~lGi 59 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY--GCEVVCFTADVGQG----IEELEGLEAKAKASGA 59 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh--CCeEEEEEEECCCC----hHHHHHHHHHHHHcCC
Confidence 379999999999999999887642 34578888776531 2478889999999987
No 91
>PRK13981 NAD synthetase; Provisional
Probab=97.20 E-value=0.00081 Score=78.09 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=48.4
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.+.+.||||+||+++|+++.+... ...+.++++.+... ...+...|+.+|++||. +|+++++++
T Consensus 282 ~~vvglSGGiDSa~~a~la~~a~g-~~~v~~~~~p~~~~---~~~~~~~a~~~a~~lgi-------~~~~i~i~~ 345 (540)
T PRK13981 282 GVVLGLSGGIDSALVAAIAVDALG-AERVRAVMMPSRYT---SEESLDDAAALAKNLGV-------RYDIIPIEP 345 (540)
T ss_pred eEEEECCCCHHHHHHHHHHHHHhC-cCcEEEEECCCCCC---CHHHHHHHHHHHHHcCC-------eEEEEECHH
Confidence 689999999999999999988653 13577777664432 22467788999999987 788887754
No 92
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.12 E-value=0.00095 Score=66.37 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=44.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
+|.+.+|||.||++++.++.+.... +.++.++++.++-.. ....+...++..++.++. +++.+.++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~-~~~~~~~~~~~~~~~~gi-------~~~~~~~~~ 68 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP-ESDEEAEFVQQFCKKLNI-------PLEIKKVDV 68 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh-hHHHHHHHHHHHHHHcCC-------CEEEEEecc
Confidence 3789999999999999998774221 235677776543211 111256677778888776 667776654
No 93
>PRK00919 GMP synthase subunit B; Validated
Probab=97.11 E-value=0.0018 Score=69.47 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=44.3
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
++.+.||||+||+++++++.+.. +..+.++++..+.. ...|...++++++++ . +|+.++++.
T Consensus 23 kVlVa~SGGVDSsvla~la~~~l--G~~v~aV~vD~G~~---~~~E~e~a~~~~~~~-i-------~~~vvd~~e 84 (307)
T PRK00919 23 KAIIALSGGVDSSVAAVLAHRAI--GDRLTPVFVDTGLM---RKGETERIKETFSDM-L-------NLRIVDAKD 84 (307)
T ss_pred CEEEEecCCHHHHHHHHHHHHHh--CCeEEEEEEECCCC---CHHHHHHHHHHHhcc-C-------CcEEEECCH
Confidence 79999999999999999998854 34577777765431 234667777777654 3 677776653
No 94
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=97.11 E-value=0.0018 Score=69.73 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=43.6
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHH-HHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSL-QELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va-~~Lg~~~p~~~~~h~~v~v~ 571 (708)
++.+.||||+||+++++++.+.. +..+.++++..+-. ...|...+.+.+ ++++. +|+.++.+
T Consensus 18 kVvValSGGVDSsvla~ll~~~~--G~~v~av~vd~G~~---~~~E~e~~~~~~~~~lgi-------~~~vvd~~ 80 (311)
T TIGR00884 18 KVIIALSGGVDSSVAAVLAHRAI--GDRLTCVFVDHGLL---RKGEAEQVVKTFGDRLGL-------NLVYVDAK 80 (311)
T ss_pred cEEEEecCChHHHHHHHHHHHHh--CCCEEEEEEeCCCC---ChHHHHHHHHHHHHHcCC-------cEEEEeCc
Confidence 79999999999999999998764 34677777765431 123555555544 46776 78877765
No 95
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=97.10 E-value=0.0038 Score=68.55 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=46.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCC-C--C----CCCchhHHHHHHHHHhhhcCCCCccceEEEec
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKN-Q--N----YNVPDRLTGLSSLQELTTLCPDRQWNFVEINI 570 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~-~--~----~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v 570 (708)
+|.+.+|||+||+++|+++.+. +..+.++++..... . . ....|...|+++|++++. +|+.+++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~---G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgI-------p~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQ---GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGI-------PLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHc---CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCC-------CEEEEEC
Confidence 5889999999999999999885 34677777742110 0 0 112367788899999987 6888777
Q ss_pred Ch
Q psy18015 571 SR 572 (708)
Q Consensus 571 ~~ 572 (708)
+.
T Consensus 72 ~~ 73 (352)
T TIGR00420 72 QK 73 (352)
T ss_pred HH
Confidence 54
No 96
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=97.04 E-value=0.0025 Score=71.04 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred CCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 493 PCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 493 ~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
..+.+++.++||||+||++++.++.+. +..+.++++..... ....+...+..+|+.++...+ +.+|+.++++.
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k~---G~~v~av~~~~~~~--~~~~~~~~~~~~a~~l~~~~~--~i~~~vv~~~~ 245 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMKR---GVEIEAVHFHSPPY--TSERAKEKVIDLARILAKYGG--RIKLHVVPFTE 245 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHHC---CCEEEEEEEeCCCC--CcHHHHHHHHHHHHHHHHhcC--CCcEEEEECHH
Confidence 344568999999999999999998774 34555555522111 112356777888888874321 23788887764
Q ss_pred hHHHHHHHHHHHHhcCCCCccccchhhHHHHHH-HHhccccCCCCCCCCCCCCceEEEecccccccc
Q psy18015 573 RELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFA-ARGVGRLGSCDYTSPRSEERRVLLLGMGADELL 638 (708)
Q Consensus 573 ~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l-~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElF 638 (708)
-. .. +... .|.. ......--.+|-+ .+.+ .+.|+.++.||+=.|.+.
T Consensus 246 ~~--~~----i~~~-~~~~-~~~v~~Rr~~~~~a~~~A-----------~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 246 IQ--EE----IKKK-VPES-YLMTLMRRFMMRIADKIA-----------EKRGALAIVTGESLGQVA 293 (394)
T ss_pred HH--HH----Hhhc-CCCc-eEEEeHHHHHHHHHHHHH-----------HHcCCCEEEEcccccccc
Confidence 32 22 1111 1111 0011111122222 2222 256899999999987764
No 97
>PRK08349 hypothetical protein; Validated
Probab=97.04 E-value=0.0037 Score=62.92 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=37.0
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
++-+++|||+||++.+.++.+. +-.+.++++.+. ..+...++.++++++.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~---g~~v~av~~d~~------~~~~~~~~~~~~~l~~ 51 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR---GVEVYPVHFRQD------EKKEEKVRELVERLQE 51 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc---CCeEEEEEEeCC------HHHHHHHHHHHHHHHH
Confidence 5679999999999999988764 345677666541 2356677788888875
No 98
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=96.99 E-value=0.0039 Score=68.89 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=48.0
Q ss_pred CCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEec
Q psy18015 493 PCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINI 570 (708)
Q Consensus 493 ~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v 570 (708)
..+.+++.+++|||+||++.+.++.+. +-.+.++++... ..+...++..++.|+...++...+++.++.
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~ll~kr---G~~V~~v~f~~g------~~~~e~v~~la~~L~~~~~~~~i~l~~v~~ 245 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFLMMKR---GVEVIPVHIYMG------EKTLEKVRKIWNQLKKYHYGGKAELIVVKP 245 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHc---CCeEEEEEEEeC------HHHHHHHHHHHHHhcccccCCcceEEEECh
Confidence 345679999999999999999998885 446766666322 124667778888888654444445655544
No 99
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.98 E-value=0.0052 Score=64.55 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCCC-C--CCeeEEEEeecCCCCCC
Q psy18015 465 VAELTKLLTQSVEKR-VRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPS-S--EPIDLLNVAFEKNQNYN 540 (708)
Q Consensus 465 ~~~l~~~L~~AV~~r-l~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~~-~--~~i~tftv~f~~~~~~d 540 (708)
.+.+.+.+.+++++. |..+ +.+|.+.+|||.||++++.++.+.... . -.+.++++.+... .+
T Consensus 9 ~~~~~~~v~~~i~~~~li~~------------~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~-~~- 74 (258)
T PRK10696 9 QKRLRRQVGQAIADFNMIEE------------GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQP-GF- 74 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCC------------CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC-CC-
Confidence 345666677777664 3222 358999999999999999988764321 1 1345555543321 11
Q ss_pred CchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 541 VPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 541 ~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+...++.++++++. +++.+.++
T Consensus 75 --~~~~~~~~~~~lgI-------~~~v~~~~ 96 (258)
T PRK10696 75 --PEHVLPEYLESLGV-------PYHIEEQD 96 (258)
T ss_pred --CHHHHHHHHHHhCC-------CEEEEEec
Confidence 23356778888886 56666554
No 100
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=96.95 E-value=0.0015 Score=71.37 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=44.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCC------CCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNY------NVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~------d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+|.+.+|||+|||+-|+++.+. +-.+..+++-+-+.... ...|...|+.+|++|+. +|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~---G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI-------p~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQ---GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGI-------PHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHC---T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT---------EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhh---cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCC-------CEEEEChH
Confidence 6899999999999999999886 45677777765442110 01357889999999997 79999885
Q ss_pred h
Q psy18015 572 R 572 (708)
Q Consensus 572 ~ 572 (708)
.
T Consensus 72 ~ 72 (356)
T PF03054_consen 72 E 72 (356)
T ss_dssp H
T ss_pred H
Confidence 4
No 101
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=96.92 E-value=0.004 Score=67.82 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=78.5
Q ss_pred eEeeEEE-ecCCC--CCCCCCceecCCcEEEEEEEEecCchhhccc-----cCCCCCChHHHHHHHHHH-----------
Q psy18015 275 TFLASVR-WTQGV--TISPQPLEDVDGNVLLWNGDVYNFTSEDNKT-----IESTSESDSLQVLQRFAS----------- 335 (708)
Q Consensus 275 ~~~g~~l-~~~g~--~~~~QP~~~~~g~v~v~NGeIyN~~~el~~~-----l~~~s~sDtevl~~~~~~----------- 335 (708)
++++|.| +|.-. -..+|||. .+||||||-++. -.+.. ..+.+.+|+|++.+++-.
T Consensus 204 ~~l~HsRFSTNT~p~W~~AHPfr-----~lvHNGEInT~~-gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~ 277 (371)
T COG0067 204 IALVHTRFSTNTFPSWPLAHPFR-----LLVHNGEINTYG-GNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASL 277 (371)
T ss_pred EEEEEeccCCCCCCCCCccCcce-----eeeecceecccc-cHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchhh
Confidence 5678876 44332 25689973 679999999987 33221 128999999999888842
Q ss_pred ---------hhH-HHhhhhccCCeEEEEEE-CCCCEEEEEeCCCCCcceEEEEeCCEEEEEccCcc
Q psy18015 336 ---------HGV-LKTLKHIQGPYSFIFLD-KKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHK 390 (708)
Q Consensus 336 ---------~g~-~~~l~~L~G~fA~~i~d-~~~~~l~l~RD~~G~kPLyy~~~~~~~~faSe~~a 390 (708)
.|. ..-...+.|.||++.-. ...+...+.+|+.+.+|.+-+..+..|.++|+..+
T Consensus 278 dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa~~~f~dgse~gA 343 (371)
T COG0067 278 DNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPADIVFTDGSEEGA 343 (371)
T ss_pred hHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCcceeEEeeeeeee
Confidence 110 12235688999988753 22367888899999999998888889999999887
No 102
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=96.89 E-value=0.0076 Score=66.21 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=44.4
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.+|.+.+|||+||++++.++++. +..+.++++.... .|...|+++|++++. +|+.++++.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~---G~eV~av~~~~~~------~e~~~a~~va~~LGI-------~~~vvd~~~ 65 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQ---GYEIVGVTMRVWG------DEPQDARELAARMGI-------EHYVADERV 65 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHc---CCcEEEEEecCcc------hhHHHHHHHHHHhCC-------CEEEEeChH
Confidence 48999999999999999988774 3456666654321 244568889999987 788887764
No 103
>PLN02347 GMP synthetase
Probab=96.89 E-value=0.0033 Score=72.51 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=46.0
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHH-HHHHHHhhhcCCCCccceEEEecCh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTG-LSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A-~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.++.+.||||+||+++|+++++.. +..+.++++..+-. ...|...+ +.++++++. +|+.++++.
T Consensus 230 ~~vvvalSGGVDSsvla~l~~~al--G~~v~av~id~g~~---~~~E~~~~~~~~a~~lgi-------~~~vvd~~e 294 (536)
T PLN02347 230 EHVICALSGGVDSTVAATLVHKAI--GDRLHCVFVDNGLL---RYKEQERVMETFKRDLHL-------PVTCVDASE 294 (536)
T ss_pred CeEEEEecCChhHHHHHHHHHHHh--CCcEEEEEEeCCCC---ChhHHHHHHHHHHHHcCC-------cEEEEeCcH
Confidence 379999999999999999999865 35677887764321 11233344 568888886 788887753
No 104
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=96.89 E-value=0.0051 Score=68.06 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 493 PCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 493 ~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
..+.+++.++||||+||++.+.++.+. +..+.++++.+... ....+...++.++++++. ++..+.++.++++
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~kr---G~~V~av~~~~~~~--~~~~~~~~v~~l~~~l~~--~~~~~~l~~v~~~- 240 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMKR---GCRVVAVHFFNEPA--ASEKAREKVERLANSLNE--TGGSVKLYVFDFT- 240 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHHc---CCeEEEEEEeCCCC--ccHHHHHHHHHHHHHHhh--cCCCceEEEEeCH-
Confidence 344568999999999999999998775 34566666654321 122456677788888754 1122345555543
Q ss_pred hHHHHHHHHHHHHhcCCCCccccchhhHHHHH-HHHhccccCCCCCCCCCCCCceEEEeccccccc
Q psy18015 573 RELEDQRHCHIKDVIYPLDTVLDDSLGCAVWF-AARGVGRLGSCDYTSPRSEERRVLLLGMGADEL 637 (708)
Q Consensus 573 ~d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~-l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDEl 637 (708)
++... .+.....+.. . ...--.+|- +.+.+ .+.|+..+.+|+=+|.+
T Consensus 241 -~~~~~---i~~~~~~~~~-c--v~cRr~m~~~a~~~A-----------~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 -DVQEE---IIHIIPEGYT-C--VLCRRMMYKAASKVA-----------EKEGCLAIVTGESLGQV 288 (371)
T ss_pred -HHHHH---HHhcCCCCce-e--HhHHHHHHHHHHHHH-----------HHcCCCEEEEccChHhh
Confidence 33222 2211111111 0 011111222 22223 36789999999988875
No 105
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=96.87 E-value=0.004 Score=69.17 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=44.5
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
|.+.+|||+||++++.++.+. +..+.++++..+.. ..|...+++.|+++|.. +|+.+++.
T Consensus 2 Vvla~SGGlDSsvll~~l~e~---g~~V~av~id~Gq~----~~e~~~a~~~a~~lGi~------~~~viD~~ 61 (394)
T TIGR00032 2 VVLAYSGGLDTSVCLKWLREK---GYEVIAYTADVGQP----EEDIDAIPEKALEYGAE------NHYTIDAR 61 (394)
T ss_pred EEEEEcCCHHHHHHHHHHHHc---CCEEEEEEEecCCC----hHHHHHHHHHHHHhCCC------eEEEEeCH
Confidence 789999999999999988775 34577777765431 24677888899998851 46666654
No 106
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.83 E-value=0.0038 Score=55.89 Aligned_cols=32 Identities=34% Similarity=0.362 Sum_probs=25.0
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEee
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAF 533 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f 533 (708)
+.+.+|||.||++++.++.+.. ..+.++++..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~---~~~~~~~~~~ 32 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG---YQVIAVTVDH 32 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC---CCEEEEEEcC
Confidence 4689999999999999998864 2466666654
No 107
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=96.80 E-value=0.0081 Score=60.41 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=55.7
Q ss_pred CcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHH
Q psy18015 496 HCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRREL 575 (708)
Q Consensus 496 ~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~ 575 (708)
.+++-++||||+||.+-+.++.+. |-.+....+..... ........++.+++.|....+....+++.++ ..++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr---G~~V~~l~f~~~~~--~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~--~~~~ 75 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR---GCEVIALHFDSPPF--TGEKAREKVEELAEKLSEYSPGHKIRLYVVD--FTEV 75 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB---T-EEEEEEEE-TTT--SSCCCHHHHHHHHHHHHCCSTTS-EEEEEEC--HHHH
T ss_pred CceEEEEecCCccHHHHHHHHHHC---CCEEEEEEEECCCC--CCHHHHHHHHHHHHHHHHhCCCcceeEEEEC--cHHH
Confidence 357889999999999988888775 34455544431111 1122345567777777764444444555544 3343
Q ss_pred HHHHHHHHHHhcCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEEeccccccc
Q psy18015 576 EDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADEL 637 (708)
Q Consensus 576 ~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDEl 637 (708)
... ..... +...+.-+ .-..+|..++..+ .+.|++.++|||---++
T Consensus 76 ~~~---i~~~~--~~~~~ci~-ckr~M~r~A~~ia----------~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 76 QKE---ILRGV--KERNPCID-CKRFMYRIAEEIA----------EEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHH---HHHHS---GGGHHHH-HHHHHHHHHHHHH----------HHTT--EEE----SSST
T ss_pred HHH---HHhcC--CccchhHH-HHHHHHHHHHHHH----------HHCCCCEEEeCchhHHH
Confidence 332 22222 11101000 1123344444331 36789999999975544
No 108
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=96.67 E-value=0.011 Score=60.60 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=41.7
Q ss_pred EeecCCcchHHHHHHHhhhCCCCCCee-EEEEeecCCCC--CCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 501 VLFSGGIDSTVIALLANQFVPSSEPID-LLNVAFEKNQN--YNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 501 v~LSGGLDSS~IAala~~~~~~~~~i~-tftv~f~~~~~--~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+++|||+||++.+.++.+. +..+. ++++...+.+. +...+...++..|+.++. +|+.++++
T Consensus 2 vl~SGGkDS~~al~~a~~~---G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgi-------p~~~i~~~ 65 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEE---GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGI-------PLVKIETS 65 (218)
T ss_pred eeecCcHHHHHHHHHHHHc---CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCC-------CEEEEECC
Confidence 6899999999999888774 33443 44543221111 123467888899999987 68888776
No 109
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.65 E-value=0.0086 Score=63.87 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=64.3
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHH
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELE 576 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~ 576 (708)
.+|.+.+|||.||++++.++.+.... -.+.+++|.-.-.. +...+.......++.++. .++...++.....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~-~~~~a~~Vd~~~~~-~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 92 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR-IEVEAVHVDHGLRG-YSDQEAELVEKLCEKLGI-------PLIVERVTDDLGR 92 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC-ceEEEEEecCCCCC-ccchHHHHHHHHHHHhCC-------ceEEEEEEeeccc
Confidence 37999999999999999999887532 24556666433211 223456666677777765 4555555443221
Q ss_pred HHHHHHHHHhcCCCCccccchhhHH-HHHHHHhccccCCCCCCCCCCCCceEEEecccccccc
Q psy18015 577 DQRHCHIKDVIYPLDTVLDDSLGCA-VWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELL 638 (708)
Q Consensus 577 ~~~~~~i~~l~~P~~~~~~~~~~~~-~~~l~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDElF 638 (708)
.. .. ..+ +....... .+++.+.+ .+.|+.++++|+-+|...
T Consensus 93 ~~----~~--~~~----~c~~c~~~R~~~l~~~a-----------~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 93 ET----LD--GKS----ICAACRRLRRGLLYKIA-----------KELGADKIATGHHLDDQA 134 (298)
T ss_pred cc----cC--CCC----hhHHHHHHHHHHHHHHH-----------HHcCCCeEEeccCcHHHH
Confidence 11 00 000 01111122 23344444 366889999999888764
No 110
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=96.59 E-value=0.011 Score=59.58 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=43.8
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCC---CCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQN---YNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~---~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
+.+++|||.||++.+.++.+. +..+.++++..+.... +...+...++..|+.++. +|+.+.++.
T Consensus 2 v~v~~SGGkDS~~al~~a~~~---G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgi-------pl~~i~~~~ 68 (194)
T cd01994 2 VVALISGGKDSCYALYRALEE---GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGI-------PLIRIEISG 68 (194)
T ss_pred EEEEecCCHHHHHHHHHHHHc---CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCC-------cEEEEeCCC
Confidence 679999999999999988875 3445555544332111 112367788889999887 677777643
No 111
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=96.56 E-value=0.004 Score=60.82 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=38.7
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELT 555 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg 555 (708)
++.+++|||+||++++.++.+. +..+.++++.+... ...+...++.++++++
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~---~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~g 52 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE---GYEVHALSFDYGQR---HAKEEEAAKLIAEKLG 52 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc---CCcEEEEEEECCCC---ChhHHHHHHHHHHHHC
Confidence 3689999999999999998875 34578888876431 1235577778888877
No 112
>PRK05370 argininosuccinate synthase; Validated
Probab=96.52 E-value=0.019 Score=63.86 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=71.8
Q ss_pred CcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHH
Q psy18015 496 HCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRREL 575 (708)
Q Consensus 496 ~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~ 575 (708)
..+|++++|||||||+++..+.+. +-.+.||++.-+.. +..|....++-|..+|.. +|+.+++..+=+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~---~~eVia~~aDvGQ~---~~ed~~~i~~kA~~~GA~------~~~viDlr~eF~ 78 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK---GAVPYAYTANLGQP---DEDDYDAIPRRAMEYGAE------NARLIDCRAQLV 78 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc---CCeEEEEEEECCCC---CccchHHHHHHHHHhCCC------EEEEeccHHHHH
Confidence 348999999999999999877664 34588998877542 123566777778888873 577777654333
Q ss_pred HHHHHHHHHHh---------cCCCCccccchhhHHHHHHHHhccccCCCCCCCCCCCCceEEE---eccccccc
Q psy18015 576 EDQRHCHIKDV---------IYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLL---LGMGADEL 637 (708)
Q Consensus 576 ~~~~~~~i~~l---------~~P~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~r~~~~kVvL---sG~GaDEl 637 (708)
.+.+ ..|..- .+|..+++..+. ++.. +.+.+ ++.|++++- ||-|-|++
T Consensus 79 e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRpl-ia~~-lv~~A-----------~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 79 AEGI-AAIQCGAFHISTGGVTYFNTTPLGRAV-TGTM-LVAAM-----------KEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHH-HHHHcCCccccccCccccCCCcchHHH-HHHH-HHHHH-----------HHhCCcEEEEcCCCCCCchH
Confidence 3444 444432 255555443322 1111 11222 356788776 66777775
No 113
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.42 E-value=0.0091 Score=68.37 Aligned_cols=118 Identities=10% Similarity=0.081 Sum_probs=65.9
Q ss_pred CCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChh
Q psy18015 494 CGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRR 573 (708)
Q Consensus 494 ~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~ 573 (708)
.+.+++.++||||+||++.+.++.+. +-.+.++++.++... ....+...++.++++++.. ...+++.+++.
T Consensus 175 g~~gk~lvllSGGiDS~va~~~~~kr---G~~v~~l~f~~g~~~-~~~~~~~~a~~l~~~~~~~---~~~~l~~v~~~-- 245 (482)
T PRK01269 175 GTQEDVLSLISGGFDSGVASYMLMRR---GSRVHYCFFNLGGAA-HEIGVKQVAHYLWNRYGSS---HRVRFISVDFE-- 245 (482)
T ss_pred cccCeEEEEEcCCchHHHHHHHHHHc---CCEEEEEEEecCCch-hHHHHHHHHHHHHHHhCcc---CCceEEEEecH--
Confidence 34568999999999999999988775 346777777665311 0111456677777766642 22346666543
Q ss_pred HHHHHHHHHHHHhcCCCCccccchhhHHHHHH-HHhccccCCCCCCCCCCCCceEEEeccccccc
Q psy18015 574 ELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFA-ARGVGRLGSCDYTSPRSEERRVLLLGMGADEL 637 (708)
Q Consensus 574 d~~~~~~~~i~~l~~P~~~~~~~~~~~~~~~l-~~~a~~~~~~~~~~~r~~~~kVvLsG~GaDEl 637 (708)
++... .... .|. .......-..++.+ .+.+ .+.|+..+.||+-.|+.
T Consensus 246 ~~~~~---i~~~--~~~-~~~~~v~rR~ml~iA~~~A-----------~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 246 PVVGE---ILEK--VDD-GQMGVVLKRMMLRAASKVA-----------ERYGIQALVTGEALGQV 293 (482)
T ss_pred HHHHH---HHhc--CCC-ceecHHHHHHHHHHHHHHH-----------HHcCCCEEEECcChHhh
Confidence 32221 1211 121 11110111112222 3333 36789999999988875
No 114
>PRK02628 nadE NAD synthetase; Reviewed
Probab=96.32 E-value=0.038 Score=66.02 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhCC----CCCCeeEEEEeecCCCCCC
Q psy18015 465 VAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVP----SSEPIDLLNVAFEKNQNYN 540 (708)
Q Consensus 465 ~~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~~----~~~~i~tftv~f~~~~~~d 540 (708)
.+++.+.+...++++++... ...+.+-||||+||+++++++.+... ....+.++++ ++. ...
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~-----------~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m--p~~-~ss 406 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATG-----------LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM--PGF-ATT 406 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----------CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC--CCC-CCC
Confidence 35566667777777775421 24789999999999998888876621 1134666665 331 122
Q ss_pred CchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 541 VPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 541 ~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
......|++.|+.||. +|+++.+.
T Consensus 407 ~~s~~~a~~la~~LGi-------~~~~i~I~ 430 (679)
T PRK02628 407 DRTKNNAVALMKALGV-------TAREIDIR 430 (679)
T ss_pred HHHHHHHHHHHHHhCC-------eEEEEEcH
Confidence 2356788899999997 78888773
No 115
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.31 E-value=0.0069 Score=59.82 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=39.3
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
+|.+.+|||.||++++.++.+.... +.++.++++...... ....+...+.+.++.++.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~-~~~~~~~~~~~~~~~~~i 59 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP-ESDEEAAFVADLCAKLGI 59 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc-hHHHHHHHHHHHHHHcCC
Confidence 3789999999999999998776421 125777777654211 101356677778888775
No 116
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=96.30 E-value=0.02 Score=55.03 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=43.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
++.+.+|||.||++++.++.+......++..+++.... ++. ....+++.++++++. +++.+..+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~--~~~-~~~~~~~~~~~~~g~-------~~~~~~~~~ 65 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGY--EFP-ETYEFVDRVAERYGL-------PLVVVRPPD 65 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCC--CCH-HHHHHHHHHHHHhCC-------CeEEECCCc
Confidence 37899999999999999998865311156655554332 121 235677788888876 566665544
No 117
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.28 E-value=0.017 Score=66.51 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=43.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHH-HHHHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLS-SLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~-va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
++.+.+|||+||+++++++.+.. +..+.++++..+- ....|...+.+ .+++++. +|+.++++
T Consensus 217 ~vlva~SGGvDS~vll~ll~~~l--g~~v~av~vd~g~---~~~~e~~~~~~~~a~~lgi-------~~~vvd~~ 279 (511)
T PRK00074 217 KVILGLSGGVDSSVAAVLLHKAI--GDQLTCVFVDHGL---LRKNEAEQVMEMFREHFGL-------NLIHVDAS 279 (511)
T ss_pred cEEEEeCCCccHHHHHHHHHHHh--CCceEEEEEeCCC---CCHHHHHHHHHHHHHHcCC-------cEEEEccH
Confidence 79999999999999999998865 3457777765332 11235555554 5577776 67777664
No 118
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=96.23 E-value=0.009 Score=63.93 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=42.9
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
+.+.||||+||+++++++.+.. +..+.++++..+-. ...|...+++.+++++. ++|+.++++
T Consensus 2 VlVa~SGGVDSsvla~ll~~~l--G~~v~aV~vd~g~~---~~~E~~~~~~~~~~~g~------i~~~vvd~~ 63 (295)
T cd01997 2 VILALSGGVDSTVAAVLLHKAI--GDRLTCVFVDNGLL---RKNEAERVEELFSKLLG------INLIVVDAS 63 (295)
T ss_pred EEEEEcCChHHHHHHHHHHHHh--CCcEEEEEecCCCC---ChHHHHHHHHHHHHhCC------CcEEEEcCc
Confidence 6789999999999999998854 34567777654321 12366677777776663 257777654
No 119
>PRK00768 nadE NAD synthetase; Reviewed
Probab=96.17 E-value=0.018 Score=60.68 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=43.0
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCC------CeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSE------PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~------~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
.+.+-||||+||+++|+++.+...... .+..+.+.-+.. ...+...|+.+++.|+.. +|.+++++
T Consensus 40 g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~---~~~~~~da~~la~~lgi~------~~~~i~I~ 110 (268)
T PRK00768 40 SLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYG---VQADEDDAQDALAFIQPD------RVLTVNIK 110 (268)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCC---CcCCHHHHHHHHHhcCCC------eeEEEECH
Confidence 577889999999999998876543111 233555544421 123567788889988862 46777664
Q ss_pred h
Q psy18015 572 R 572 (708)
Q Consensus 572 ~ 572 (708)
+
T Consensus 111 ~ 111 (268)
T PRK00768 111 P 111 (268)
T ss_pred H
Confidence 3
No 120
>KOG2805|consensus
Probab=95.97 E-value=0.034 Score=58.56 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=54.0
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEE-eecCCCC-----CCCchhHHHHHHHHHhhhcCCCCccceEEEec
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNV-AFEKNQN-----YNVPDRLTGLSSLQELTTLCPDRQWNFVEINI 570 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv-~f~~~~~-----~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v 570 (708)
.+|.+.+|||+|||+-|.|+++... .+..+-+ .+++.++ ..+.|...|+.|+++|+. +++.|++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~---~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI-------~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGY---NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNI-------PLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCC---CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCC-------eeEEEee
Confidence 3799999999999999999887643 3332222 1222111 124578889999999987 7889998
Q ss_pred ChhHHHHHHHHHHHH
Q psy18015 571 SRRELEDQRHCHIKD 585 (708)
Q Consensus 571 ~~~d~~~~~~~~i~~ 585 (708)
..|-+.+.+...+..
T Consensus 76 ~kEYW~~Vfs~~L~~ 90 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEE 90 (377)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666555543
No 121
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=95.94 E-value=0.02 Score=63.19 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=45.6
Q ss_pred EeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChhHHHHHHH
Q psy18015 501 VLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRH 580 (708)
Q Consensus 501 v~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~d~~~~~~ 580 (708)
+++|||||||++...+.+.. +-.+.||++..+.. ..|....++-|..+|.. +|+.+++..+=+.+.+.
T Consensus 2 LAySGGLDTS~~l~~L~e~~--~~~Via~~aDlGq~----~~d~~~i~~kA~~~Ga~------~~~vvD~r~ef~~~~i~ 69 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG--GYEVIAVTADLGQP----DEDLEAIEEKALKLGAS------KHIVVDARDEFAEDYIF 69 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT--TEEEEEEEEESSST-----S-HHHHHHHHHHHT-S------EEEEEE-HHHHHHHTHH
T ss_pred eeeCCChHHHHHHHHHHhhc--CceEEEEEEECCCc----HHHHHHHHHHHHhcCCc------eeeecchHHHHHHHHHH
Confidence 67999999999988887753 24688999887652 13677778888889973 68888875433324433
Q ss_pred HHH
Q psy18015 581 CHI 583 (708)
Q Consensus 581 ~~i 583 (708)
..|
T Consensus 70 ~aI 72 (388)
T PF00764_consen 70 PAI 72 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 122
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.90 E-value=0.023 Score=56.36 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=36.5
Q ss_pred eEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
|.+.+|||.||++++.++.+.... +..+.+++|...-.. ....+....+..++.++. +++.+.++
T Consensus 2 i~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-~s~~~~~~v~~~~~~~~i-------~~~~~~~~ 67 (182)
T PF01171_consen 2 ILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-ESDEEAEFVEEICEQLGI-------PLYIVRID 67 (182)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-CHHHHHHHHHHHHHHTT--------EEEEEE--
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccchhHHHHHHHHHhcCC-------ceEEEEee
Confidence 789999999999999988876431 234666666543211 111234555566666665 56665554
No 123
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=95.74 E-value=0.096 Score=57.03 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=49.5
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecChh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRR 573 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~~ 573 (708)
.+|++.+|||||+|++.-.+.... +-.+.|||+..++. ..|...+++-|..+|.. +|+.+++..+
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~--~~eVia~tadvGQ~----eed~~~i~eKA~~~Ga~------~~~viD~ree 69 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKG--GAEVIAVTADVGQP----EEDLDAIREKALELGAE------EAYVIDAREE 69 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhc--CceEEEEEEeCCCC----hHHhHHHHHHHHHhCCc------eEEEeecHHH
Confidence 479999999999999888777654 34677888776542 24788888888889974 6888887543
No 124
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.56 E-value=0.14 Score=55.03 Aligned_cols=55 Identities=27% Similarity=0.274 Sum_probs=39.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
++.+.+|||.||++++.++.+.... ..++..+++..+- .+ ++ ..++..++++++.
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~--~F--pEt~ef~d~~a~~~gl 85 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW--KF--PEMIEFRDRRAKELGL 85 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC--CC--HHHHHHHHHHHHHhCC
Confidence 6889999999999999999887532 2356777765432 22 33 4677788888886
No 125
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.36 E-value=0.29 Score=49.15 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCccccC-CCCCcceEEeecCCcchHHHHHHHhhh
Q psy18015 468 LTKLLTQSVEKRVRTQPSHCVQCVE-PCGHCKTGVLFSGGIDSTVIALLANQF 519 (708)
Q Consensus 468 l~~~L~~AV~~rl~sdv~~~~~~~~-~~~~~~vgv~LSGGLDSS~IAala~~~ 519 (708)
+.+.|++.+..||.... ...- ...+.++++.+|||.|||+.+-++...
T Consensus 35 ~~~rl~e~l~~RL~g~~----ef~r~~id~~kiaVA~SGG~DSsas~iilR~~ 83 (255)
T COG1365 35 VYERLRELLKKRLEGEK----EFERIKIDKPKIAVAYSGGVDSSASAIILRWA 83 (255)
T ss_pred HHHHHHHHHHHHhcCch----hcccCCCCCceEEEEecCCcchHHHHHHHHhh
Confidence 55677778888886531 1111 112258999999999999998888765
No 126
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=95.31 E-value=0.048 Score=65.22 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHH-------hhhCCCC-C-------------
Q psy18015 466 AELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLA-------NQFVPSS-E------------- 524 (708)
Q Consensus 466 ~~l~~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala-------~~~~~~~-~------------- 524 (708)
+++...+...++.+++... -..+-+-||||+||+++|+++ .+....+ .
T Consensus 329 ~ei~~~~~~~L~d~l~~~g-----------~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~ 397 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSG-----------ASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYA 397 (700)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------CCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhcccc
Confidence 3555666666677765421 236778899999999988885 2222100 0
Q ss_pred --------------CeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 525 --------------PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 525 --------------~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
-+.++++.... .....+..|+++|+.||. .|++++|++
T Consensus 398 ~~~~~~~~~~~~~~~~~~v~mp~~~---ss~~t~~~A~~la~~lG~-------~~~~i~I~~ 449 (700)
T PLN02339 398 DGEVPTDSKEFAKRIFYTVYMGSEN---SSEETRSRAKQLADEIGS-------SHLDVKIDG 449 (700)
T ss_pred ccccccchhhhhcceeEEEECCCCC---CCHHHHHHHHHHHHHHCC-------CEEEEeCHH
Confidence 03344433211 112356788899999998 789888864
No 127
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=94.60 E-value=0.087 Score=59.65 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=39.7
Q ss_pred cceEEeecCCcchHHHHHHHhhhC--CCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFV--PSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~--~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
.++.+.+|||.||++++.++.+.. ..+-.+.+++|.+.-.. ....+..+++..++.++.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-~s~~~~~~~~~~~~~l~i 76 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-NADSWVKHCEQVCQQWQV 76 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-chHHHHHHHHHHHHHcCC
Confidence 489999999999999999887542 11345777777665321 111234666777888776
No 128
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.088 Score=54.85 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=27.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEe
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVA 532 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~ 532 (708)
++-+.||||+|||+.|.|+++.. +..+.|.-+.
T Consensus 23 kvi~alSGGVDSsv~a~L~~~Ai--Gd~l~cvfVD 55 (315)
T COG0519 23 KVILALSGGVDSSVAAVLAHRAI--GDQLTCVFVD 55 (315)
T ss_pred eEEEEecCCCcHHHHHHHHHHHh--hcceEEEEec
Confidence 78999999999999999999886 4566665543
No 129
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=93.99 E-value=0.23 Score=52.37 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=41.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCC---CCeeEEEEeecCCCCCCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSS---EPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~---~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
.+-+-+|||+||+++++++.+....+ ..+.++..-+..- ...+..-|..+++.++. +..++++++
T Consensus 27 ~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~---~~~~~~da~~~~~~lg~-------~~~~i~I~~ 94 (268)
T COG0171 27 GVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYT---VQADEEDAQDLAEALGI-------DYKEINIKP 94 (268)
T ss_pred CeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCc---cccCHHHHHHHHHHhCC-------ceEEEecHH
Confidence 57788999999999999998876421 1144444333210 12345567778888887 556666643
No 130
>PRK08576 hypothetical protein; Provisional
Probab=93.95 E-value=0.6 Score=52.70 Aligned_cols=53 Identities=23% Similarity=0.126 Sum_probs=37.9
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
++.+.+|||.||++++.++.+..+ .+.++++..+. .+. ....+++++++.++.
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~---~V~aV~iDTG~--e~p-et~e~~~~lae~LGI 288 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG---DVTAVYVDTGY--EMP-LTDEYVEKVAEKLGV 288 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC---CCEEEEeCCCC--CCh-HHHHHHHHHHHHcCC
Confidence 799999999999999999888753 36666654221 111 235677888888876
No 131
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=93.50 E-value=0.19 Score=55.32 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCCcceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEe
Q psy18015 493 PCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVA 532 (708)
Q Consensus 493 ~~~~~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~ 532 (708)
..+.+++-++||||+||-+-+.++-+. |-+++.+.+.
T Consensus 172 vGt~Gk~l~LlSGGIDSPVA~~l~mkR---G~~v~~v~f~ 208 (383)
T COG0301 172 VGTQGKVLLLLSGGIDSPVAAWLMMKR---GVEVIPVHFG 208 (383)
T ss_pred cccCCcEEEEEeCCCChHHHHHHHHhc---CCEEEEEEEc
Confidence 345568899999999999988887764 4456555543
No 132
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=93.45 E-value=0.12 Score=49.51 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=19.6
Q ss_pred eeeeeccCchhhHhhhccCCchhhhhh
Q psy18015 130 ANVNITAGGDKAVLMKTLDTYPLFCDN 156 (708)
Q Consensus 130 a~~~~~~~g~~~~~~~~~~gy~~~~~~ 156 (708)
++++++|+++|| +|+||+.++..
T Consensus 103 ~~~il~G~~~de----~~~Gy~~~~~~ 125 (154)
T cd01996 103 IPLIITGENPAQ----EFGGIREEEGG 125 (154)
T ss_pred cCEEEeCcCHHH----hcccccccccc
Confidence 467899999999 99999987654
No 133
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=93.30 E-value=1.5 Score=45.98 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=36.1
Q ss_pred eEeeEEEe-cCCC-C-CCCCCceecC-Cc--EEEEEEEEecCchh-hccccCCCCCChHHHHH
Q psy18015 275 TFLASVRW-TQGV-T-ISPQPLEDVD-GN--VLLWNGDVYNFTSE-DNKTIESTSESDSLQVL 330 (708)
Q Consensus 275 ~~~g~~l~-~~g~-~-~~~QP~~~~~-g~--v~v~NGeIyN~~~e-l~~~l~~~s~sDtevl~ 330 (708)
.++.|+|. +.|. + .+.||+..+. |. +++|||.|-++. . +...+.....+|.|...
T Consensus 72 ~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~-~~~~~~~~~~~~tds~~~~ 133 (252)
T COG0121 72 LVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFK-LLEGRKLEPVGYTDSEAAF 133 (252)
T ss_pred EEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcc-cccccccCCCCcchHHHHH
Confidence 67888875 7774 2 7899998753 43 479999999997 4 33333223345555444
No 134
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=90.80 E-value=2.5 Score=45.29 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=37.9
Q ss_pred eEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
+.+++|||-||++++.|+.+.... ..++..+++..+- ..++ ..+...++++++.
T Consensus 22 ~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~----~F~Et~efrd~~a~~~gl 77 (294)
T TIGR02039 22 PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGW----KFREMIAFRDHMVAKYGL 77 (294)
T ss_pred cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCC
Confidence 468899999999999999887532 2457777775432 2234 3455678888876
No 135
>PRK13795 hypothetical protein; Provisional
Probab=90.31 E-value=1.3 Score=52.71 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=40.2
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhhcCCCCccceEEEec
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTTLCPDRQWNFVEINI 570 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~~~p~~~~~h~~v~v 570 (708)
++.+.+|||.||++++.++.+... ++..+.+... ...|+ ..+++.++++++. +++.+..
T Consensus 245 ~v~Va~SGGKDS~vll~L~~~a~~---~~~vvfiDTg----~efpet~e~v~~~~~~~gi-------~i~~~~~ 304 (636)
T PRK13795 245 PVSVSFSGGKDSLVVLDLAREALK---DFKAFFNNTG----LEFPETVENVKEVAEEYGI-------ELIEADA 304 (636)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCC---CcEEEEEeCC----CCCHHHHHHHHHHHHHcCC-------cEEEEcc
Confidence 799999999999999999988753 3555544322 12233 4677778887765 5665544
No 136
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=89.64 E-value=1.4 Score=45.68 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=41.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
++.+.+|||-||++++.++.+.. .++..+.+..+- ..|| ..++..++++++. +++.+...
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~---~~i~vvfiDTG~----~~pet~e~~~~~~~~~gl-------~l~v~~~~ 102 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD---PDIPVIFLDTGY----LFPETYRFIDELTERLLL-------NLKVYRPD 102 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC---CCCcEEEecCCC----CCHHHHHHHHHHHHHhCC-------CEEEECCC
Confidence 58999999999999999999864 356666664322 2333 4566777777765 56655543
No 137
>PRK08557 hypothetical protein; Provisional
Probab=88.94 E-value=2 Score=48.27 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=36.9
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
.++.+.+|||-||++++.++.+.. .++..+.+... .+.|+ ..+.++++++++.
T Consensus 182 ~~i~vsfSGGKDS~vlL~L~~~~~---~~i~vvfvDTG----~efpET~e~ve~v~~~ygl 235 (417)
T PRK08557 182 YAINASFSGGKDSSVSTLLAKEVI---PDLEVIFIDTG----LEYPETINYVKDFAKKYDL 235 (417)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHhC---CCCEEEEEECC----CCCHHHHHHHHHHHHHhCC
Confidence 368899999999999999988764 34666655432 12233 3566778887775
No 138
>PRK13794 hypothetical protein; Provisional
Probab=88.09 E-value=3.1 Score=47.76 Aligned_cols=54 Identities=20% Similarity=0.123 Sum_probs=36.2
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
.++.+.+|||-||++++.++.+.. +.++..+.+..+ ...|+ ..+.+.++++++.
T Consensus 248 ~~v~vs~SGGKDS~v~L~L~~~~~--~~~~~vvfiDTG----~efpet~e~i~~~~~~~gl 302 (479)
T PRK13794 248 KPVTVAYSGGKDSLATLLLALKAL--GINFPVLFNDTG----LEFPETLENVEDVEKHYGL 302 (479)
T ss_pred CCEEEEecchHHHHHHHHHHHHHh--CCCeEEEEEECC----CCChHHHHHHHHHHHhcCC
Confidence 379999999999999999887764 234655555322 22233 3456677777665
No 139
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=87.69 E-value=3.5 Score=44.53 Aligned_cols=55 Identities=27% Similarity=0.251 Sum_probs=38.9
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-CCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-SEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
++++++|||-||++++.|+.+.... ..++..+.+..+ +.-|| ..+...++++++.
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG----~~FpEt~efrD~~a~~~gl 95 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT----WKFREMIDFRDRRAKELGL 95 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC----CCCHHHHHHHHHHHHHhCC
Confidence 4689999999999999999887422 235677776532 22344 3566678888876
No 140
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=87.63 E-value=2.6 Score=43.28 Aligned_cols=64 Identities=27% Similarity=0.360 Sum_probs=40.8
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCC-CC--CCCchhHHHHHHHHHhhhcCCCCccceEEEecCh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKN-QN--YNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~-~~--~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~ 572 (708)
++.+++|||-||++-+..+.+.. ....++|+ ++.. +. +-.++...++..|+.++. +++.+.++.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~---~V~~L~~~-~~~~~~s~~~h~~~~~~~~~qA~algi-------Pl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH---EVISLVGV-FSENEESYMFHSPNLHLTDLVAEAVGI-------PLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC---eeEEEEEE-cCCCCCccccccCCHHHHHHHHHHcCC-------CeEEEEcCC
Confidence 47899999999999777665531 33444444 3321 11 123466778888999887 677666544
No 141
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=87.45 E-value=4.8 Score=45.69 Aligned_cols=46 Identities=24% Similarity=0.209 Sum_probs=28.6
Q ss_pred cceEEeecCCcchHHHHHHHhhhC---CCCCCeeEEEEeecCCCCCCCch
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFV---PSSEPIDLLNVAFEKNQNYNVPD 543 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~---~~~~~i~tftv~f~~~~~~d~~D 543 (708)
.|..+.+|||=||++++.|+-+.+ +...+...+.|-|.+ ...+.|+
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~D-TgvE~Pe 62 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTD-TLVENPI 62 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECc-CCCccHH
Confidence 488999999999999998765432 222223445555554 2334454
No 142
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=84.61 E-value=2 Score=41.42 Aligned_cols=51 Identities=25% Similarity=0.237 Sum_probs=31.6
Q ss_pred eEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 499 TGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
+.+.+|||-||++++.++.+... ++..+.+... .+.|+ ..+.+.+++.++.
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~---~~~vv~~dtg----~e~p~t~~~~~~~~~~~~~ 53 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGR---KVPVVFIDTG----YEFPETYEFVDELAKRYGI 53 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHT---TCEEEEEE-S----TB-HHHHHHHHHHHHHTTC
T ss_pred eEEEecCCHHHHHHHHHHHHhcC---CCcEEEEecC----ccCHHHHHHHHHHHhhhhh
Confidence 67999999999999999988753 3333333322 23344 3666777777765
No 143
>PRK06850 hypothetical protein; Provisional
Probab=81.74 E-value=7.5 Score=44.75 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCCccccCCCCCcceEEeecCCcchHHHHHHHhhhC---CCCCCeeEEEEeecCCCCCCCchh-H
Q psy18015 470 KLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFV---PSSEPIDLLNVAFEKNQNYNVPDR-L 545 (708)
Q Consensus 470 ~~L~~AV~~rl~sdv~~~~~~~~~~~~~~vgv~LSGGLDSS~IAala~~~~---~~~~~i~tftv~f~~~~~~d~~D~-~ 545 (708)
+.+.+.|+....++ +.|+.+.+|||=||++++.++-+.. +.......+.|-|.+. ..+.|+. .
T Consensus 20 ~~~i~~i~~~Y~~~------------~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DT-gvE~Pe~~~ 86 (507)
T PRK06850 20 EELIEEIQELYCAD------------NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDT-LVENPVVVD 86 (507)
T ss_pred HHHHHHHHHHHhcC------------CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCC-CCccHHHHH
Confidence 34445566655543 2478999999999999988765432 2112233445555542 2344543 3
Q ss_pred HHHHHHHHh
Q psy18015 546 TGLSSLQEL 554 (708)
Q Consensus 546 ~A~~va~~L 554 (708)
+...+.+.+
T Consensus 87 ~v~~~l~~i 95 (507)
T PRK06850 87 WVNKSLERI 95 (507)
T ss_pred HHHHHHHHH
Confidence 334443333
No 144
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=81.03 E-value=1.6 Score=37.22 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.2
Q ss_pred eEEeecCCcchHHHHHHHhhh
Q psy18015 499 TGVLFSGGIDSTVIALLANQF 519 (708)
Q Consensus 499 vgv~LSGGLDSS~IAala~~~ 519 (708)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 357899999999999988776
No 145
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=79.19 E-value=5 Score=40.68 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=35.6
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchh-HHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDR-LTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~-~~A~~va~~Lg~ 556 (708)
++.+.+|||-||++++-|+.+..+ ++..+.+..+ .+-||. .+..++.+.++.
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~~---~~~v~f~DTg----~efpeT~efv~~~~~~~~l 67 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKISP---DIPVIFLDTG----YHFPETYELIDELTERYPL 67 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcCC---CCcEEEecCC----CCCHHHHHHHHHHHHHhCC
Confidence 689999999999999999988653 4555544322 234453 356666776653
No 146
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=78.64 E-value=8.7 Score=41.58 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=27.6
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCC-C-CCeeEEEEeecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPS-S-EPIDLLNVAFEK 535 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~-~-~~i~tftv~f~~ 535 (708)
.|++.||||-||++...|++..... + .+|.-+-+.+++
T Consensus 29 ~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~ 68 (407)
T COG3969 29 RVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEA 68 (407)
T ss_pred eEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchh
Confidence 7999999999999988877654321 2 256666666654
No 147
>KOG1706|consensus
Probab=78.21 E-value=4.2 Score=43.16 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=38.1
Q ss_pred cceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCchhHHHHHHHHHhhh
Q psy18015 497 CKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 497 ~~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D~~~A~~va~~Lg~ 556 (708)
+.+-...|||||+|+|.+-+... +-.+-+|....+. ..|...|++-|-.+|+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq---GyeViay~AnvGQ-----~edfe~ar~kAlk~Ga 57 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ---GYEVIAYLANVGQ-----KEDFEEARKKALKSGA 57 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc---CceEEEeeccccc-----hhhHHHHHHhhhhcCc
Confidence 45778899999999999888775 4567777654433 2367778887777776
No 148
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=75.84 E-value=11 Score=38.75 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=37.2
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELT 555 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg 555 (708)
++.+..|||.||.++..|+++... .++..|.+..+. .-|| ..++..++++++
T Consensus 27 ~~~~s~S~Gkds~VlL~l~~~~~~--~~i~vv~vDTg~----~fpET~e~~d~~~~~~~ 79 (226)
T TIGR02057 27 GLVQTSAFGIQALVTLHLLSSISE--PMIPVIFIDTLY----HFPQTLTLKDELTKKYY 79 (226)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhC--CCCCEEEEeCCC----CCHHHHHHHHHHHHHhC
Confidence 689999999999999999998751 346666665432 2234 356677777776
No 149
>PRK08349 hypothetical protein; Validated
Probab=75.78 E-value=18 Score=36.19 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=33.7
Q ss_pred hhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCC
Q psy18015 205 DKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPD 260 (708)
Q Consensus 205 ~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD 260 (708)
.|--+++.|..+|+...+..+.....|..+ .-........+.+.+..|+.|||+
T Consensus 145 ~K~eI~~~a~~~g~~~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T PRK08349 145 DKEEIVKIAKEIGTFEISIEPEPPCPFVPK--YPVVRASLGEFEKILEEVYVLGPE 198 (198)
T ss_pred CHHHHHHHHHHcCChhhhhCCCCCCcCCCC--CCcCCCCHHHHHHHHHHHhccCCC
Confidence 566778888889976554333322223211 111124567899999999999995
No 150
>KOG1622|consensus
Probab=73.68 E-value=15 Score=41.13 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=26.4
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEE
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNV 531 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv 531 (708)
.|-+++|||.|||+.++++.+... ..++++.-+
T Consensus 232 ~Vl~~vSGgvdStV~a~Ll~~alg-~~R~~ai~v 264 (552)
T KOG1622|consen 232 KVLVAVSGGVDSTVCAALLRRALG-PDRVHAIHV 264 (552)
T ss_pred ceEEEecCCchHHHHHHHHHHhhC-CCceEEEEe
Confidence 688999999999999999988763 245666655
No 151
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=72.82 E-value=1.7 Score=47.72 Aligned_cols=18 Identities=6% Similarity=-0.215 Sum_probs=16.1
Q ss_pred eeeeccCchhhHhhhccCCchh
Q psy18015 131 NVNITAGGDKAVLMKTLDTYPL 152 (708)
Q Consensus 131 ~~~~~~~g~~~~~~~~~~gy~~ 152 (708)
+++++|.++|| +||||+.
T Consensus 162 ~~Il~G~~~dE----~fgGy~~ 179 (343)
T TIGR03573 162 PLIIWGENIAE----EYGGDSE 179 (343)
T ss_pred CEEEeCCCHHH----hcCCccc
Confidence 67899999999 9999874
No 152
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.56 E-value=11 Score=39.64 Aligned_cols=52 Identities=29% Similarity=0.321 Sum_probs=36.1
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCCCCCch-hHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVPD-RLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~~d~~D-~~~A~~va~~Lg~ 556 (708)
++.+..|||.||++++.|+.+... ++..+.+... +.-++ ..+..+++++++.
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~---~~~vif~DTg----~~f~Et~~~~d~~~~~~~~ 93 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFP---DFPVIFLDTG----YHFPETYEFRDRLAEEYGL 93 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcC---CCcEEEEeCC----CcCHHHHHHHHHHHHHcCC
Confidence 679999999999999999998763 3444444322 22233 4566778887774
No 153
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=68.42 E-value=12 Score=38.48 Aligned_cols=64 Identities=25% Similarity=0.226 Sum_probs=34.0
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCC--CCCchhHHHHHHHHHhhhcCCCCccceEEEecC
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQN--YNVPDRLTGLSSLQELTTLCPDRQWNFVEINIS 571 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~--~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~ 571 (708)
++.+++|||=||++-+..|.+.. +...++|+.-++... +-.+........|+.++. +++.+.++
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~---~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algi-------pl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH---EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGI-------PLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT---------EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC---CccEEEEeccCCCCcccccccCHHHHHHHHHHCCC-------CEEEEEcc
Confidence 47899999999998666554431 223455554332221 222334556667788887 67777765
No 154
>KOG2303|consensus
Probab=67.22 E-value=4.6 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.4
Q ss_pred CCCceEEEeccccccccCCchh
Q psy18015 622 SEERRVLLLGMGADELLGGYTR 643 (708)
Q Consensus 622 ~~~~kVvLsG~GaDElFgGY~r 643 (708)
..|--.||.-.--||-+-||-.
T Consensus 506 ~~GglLVLGSaNVDE~LrGYLT 527 (706)
T KOG2303|consen 506 RPGGLLVLGSANVDESLRGYLT 527 (706)
T ss_pred CCCceEEEecCccchHhhhhhh
Confidence 3567778888888999999953
No 155
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=58.48 E-value=46 Score=34.32 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=33.9
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCeeEEEEeecCCCC--CCCchhHHHHHHHHHhhh
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQN--YNVPDRLTGLSSLQELTT 556 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i~tftv~f~~~~~--~d~~D~~~A~~va~~Lg~ 556 (708)
++.+++|||=||+.-+..|.+. . ..+.++|+.-.+.+. +-.+.....+..|+.++.
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~--~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algi 59 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H--EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGI 59 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C--eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCC
Confidence 3568999999999876665543 1 344555554222111 122345667778888886
No 156
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=57.17 E-value=59 Score=33.40 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=45.5
Q ss_pred ceEEeecCCcchHHHHHHHhhhCCCCCCe-eEEEEeecCCCC--CCCchhHHHHHHHHHhhhcCCCCccceEEEecCh--
Q psy18015 498 KTGVLFSGGIDSTVIALLANQFVPSSEPI-DLLNVAFEKNQN--YNVPDRLTGLSSLQELTTLCPDRQWNFVEINISR-- 572 (708)
Q Consensus 498 ~vgv~LSGGLDSS~IAala~~~~~~~~~i-~tftv~f~~~~~--~d~~D~~~A~~va~~Lg~~~p~~~~~h~~v~v~~-- 572 (708)
++.+++|||=||+.-+..+-+. +..+ .+.++--+..+. +-.+...++...|+.++. ++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~---G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi-------~l~~~~~~g~~ 71 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE---GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGI-------PLVTFDTSGEE 71 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc---CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCC-------ceEEEecCccc
Confidence 4689999999998766666554 2333 344443222211 223567788888888876 556555554
Q ss_pred hHHHHHHHHHHHHhc
Q psy18015 573 RELEDQRHCHIKDVI 587 (708)
Q Consensus 573 ~d~~~~~~~~i~~l~ 587 (708)
+.-.+.+.+.+..+.
T Consensus 72 e~eve~L~~~l~~l~ 86 (223)
T COG2102 72 EREVEELKEALRRLK 86 (223)
T ss_pred hhhHHHHHHHHHhCc
Confidence 112233344454443
No 157
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=54.47 E-value=8.7 Score=42.38 Aligned_cols=41 Identities=15% Similarity=-0.016 Sum_probs=28.7
Q ss_pred hhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCC-CCCCCcE
Q psy18015 214 WKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRG-PDSFKQL 265 (708)
Q Consensus 214 ~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRG-pD~~g~~ 265 (708)
.+|||.+++... |+.+ ....+.+.+||.+|.||| +++.|..
T Consensus 11 daCGig~i~~~~------g~~s-----h~iv~~~~~~L~~m~hRG~~~adg~~ 52 (371)
T COG0067 11 DACGIGGIAHKD------GRPS-----HKIVEDALEALVNLTHRGAPGADGYA 52 (371)
T ss_pred ccCcEEEEEecC------CCcc-----hhHHHHHHHHHHhhhccCCCCCCccc
Confidence 479999887543 2211 122467889999999999 8888764
No 158
>KOG0399|consensus
Probab=50.01 E-value=61 Score=40.73 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=37.1
Q ss_pred hhhhccCCeEEEEEECCCCEEEEEeCCCCCcceEEEEe-CCEEEEEccCcc
Q psy18015 341 TLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT-PTSILVTSVAHK 390 (708)
Q Consensus 341 ~l~~L~G~fA~~i~d~~~~~l~l~RD~~G~kPLyy~~~-~~~~~faSe~~a 390 (708)
.++-.+|.=-+.+-| .+.+-+.=||-|.||.-|+.+ ++.+++|||+-.
T Consensus 406 ~MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGv 454 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGV 454 (2142)
T ss_pred cCCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeecccc
Confidence 456678876666655 457888889999999977775 589999999764
No 159
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=40.90 E-value=16 Score=40.40 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=20.4
Q ss_pred HHHHHHHHHhccCCCC------CCCCcEEec
Q psy18015 244 APIIDVCQEAIQRRGP------DSFKQLTIS 268 (708)
Q Consensus 244 ~~~l~~~l~~l~hRGp------D~~g~~~~~ 268 (708)
.+...++|.+|+|||. ||+|+.+..
T Consensus 18 v~~~l~~L~~m~HRG~~d~~tGDGAGi~~~i 48 (361)
T PF00310_consen 18 VDDALEALKRMEHRGGVDGNTGDGAGILTDI 48 (361)
T ss_dssp HHHHHHHHHHHGGGSTBTSSCESEEEEEEE-
T ss_pred HHHHHHHHhcccccCCCCCCCCcceEEEEec
Confidence 4677889999999999 999887643
No 160
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=32.78 E-value=33 Score=32.41 Aligned_cols=17 Identities=47% Similarity=0.573 Sum_probs=15.2
Q ss_pred CchHHHHHHHhhhcCCC
Q psy18015 1 GIDSTVIALLANQFVPS 17 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~ 17 (708)
|.|||+++.|+.+..+.
T Consensus 9 GkDS~~ll~l~~~~~~~ 25 (173)
T cd01713 9 GKDSTVLLHLALKALPE 25 (173)
T ss_pred ChHHHHHHHHHHHhccc
Confidence 89999999999998764
No 161
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=31.37 E-value=47 Score=31.36 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHhCCCCceeEEEecCchhhHhhhcccc
Q psy18015 66 LTGLSSLQELTTLCPDRQWNFVEVNGLKEHKWKRNISI 103 (708)
Q Consensus 66 ~t~~~~~~el~~~~p~r~~~~v~vnv~~~~~~~~~~~i 103 (708)
..----++||.+.+++.+++|+.||++.+...+.+..|
T Consensus 52 ~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV 89 (132)
T PRK11509 52 SDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGV 89 (132)
T ss_pred ccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCC
Confidence 33456689999999988899999999998887777666
No 162
>PRK14428 acylphosphatase; Provisional
Probab=30.78 E-value=69 Score=28.55 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=39.9
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-....|.++||.+.+.+. +.+...+.=++..+.+.++++.|. .||..+
T Consensus 20 GVGFR~fv~~~A~~lgL~G~V~N~------~dGsVei~~qG~~~~i~~fi~~l~-~gP~~a 73 (97)
T PRK14428 20 GVGFRYFTVTQARRLGVQGWVRNC------RDGSVELEAQGSSDAVQALVEQLA-IGPRWS 73 (97)
T ss_pred CccchHHHHHHHHHcCCEEEEEEC------CCCEEEEEEEcCHHHHHHHHHHHh-hCCCcc
Confidence 677778888999999999877542 333233333467889999999998 799754
No 163
>PRK14451 acylphosphatase; Provisional
Probab=27.13 E-value=80 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.038 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|.++||.+.+.+. .-|+ ..+.=+++.+.+.+|++.|. .||..+
T Consensus 15 GVGFR~~~~~~A~~~gl~G~V~N~----~dG~--Vei~~qG~~~~i~~f~~~l~-~gp~~a 68 (89)
T PRK14451 15 GVWFRASAKKLAEQLMISGWARNL----ADGR--VEVFACGKEDKLEEFYTWLQ-KGPLNA 68 (89)
T ss_pred CcCchHHHHHHHHHhCCEEEEEEC----CCCC--EEEEEEECHHHHHHHHHHHh-hCCCce
Confidence 666677888999999999877542 1232 22222456788999999998 798643
No 164
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=26.98 E-value=1.3e+02 Score=29.54 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.0
Q ss_pred CchHHHHHHHhhhcCCC-CCCeeEEeec
Q psy18015 1 GIDSTVIALLANQFVPS-SEPIDLLNVA 27 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~-~~~idLlnva 27 (708)
|.||++++.++.+..+. +..+-++.|-
T Consensus 9 G~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 9 GVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 89999999999886543 2235555553
No 165
>PRK14445 acylphosphatase; Provisional
Probab=26.69 E-value=76 Score=27.76 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=38.7
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|.++||.+.+.+. ..+...+.=+++.+.+++++..|. .||..+
T Consensus 16 GVGFR~~v~~~A~~~gl~G~V~N~------~dG~Vei~~qG~~~~l~~f~~~l~-~gP~~a 69 (91)
T PRK14445 16 GVGFRMFIDRAASELNLSGWVRNL------PDGTVEIEAQGSSGMIDELIKQAE-RGPSRS 69 (91)
T ss_pred CcCChHHHHHHHhhCCCEEEEEEC------CCCeEEEEEEECHHHHHHHHHHHH-hCCCCc
Confidence 666677889999999999877542 333222322456788999999998 799754
No 166
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=24.48 E-value=38 Score=18.83 Aligned_cols=13 Identities=31% Similarity=0.444 Sum_probs=10.9
Q ss_pred HhcCceeeccCCC
Q psy18015 682 CDHGRQSRTPFLD 694 (708)
Q Consensus 682 ma~glE~R~PFLD 694 (708)
|.|+..+|+|-|.
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 6789999999875
No 167
>PRK14444 acylphosphatase; Provisional
Probab=23.64 E-value=1.1e+02 Score=26.92 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|..+||.+.+.+- .-|+ ..+.=+++.+.+..+++.|. .||..+
T Consensus 16 GVGFR~~v~~~A~~lgl~G~V~N~----~dG~--Vei~~qG~~~~i~~f~~~l~-~gp~~a 69 (92)
T PRK14444 16 GVNFRAYTRDRAREAGVKGWVRNL----SDGR--VEAVFEGSRPAVQKMISWCY-SGPSHA 69 (92)
T ss_pred CcCcHHHHHHHHHHhCCEEEEEEC----CCCc--EEEEEEcCHHHHHHHHHHHH-hCCCCc
Confidence 666677888999999999877542 2232 22322456788999999998 788754
No 168
>PRK00919 GMP synthase subunit B; Validated
Probab=23.02 E-value=1.1e+02 Score=33.05 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=20.0
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKN 31 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~~ 31 (708)
|+|||++|.++++.+ + .+++=|-+.++
T Consensus 31 GVDSsvla~la~~~l--G--~~v~aV~vD~G 57 (307)
T PRK00919 31 GVDSSVAAVLAHRAI--G--DRLTPVFVDTG 57 (307)
T ss_pred CHHHHHHHHHHHHHh--C--CeEEEEEEECC
Confidence 899999999999854 1 35666666554
No 169
>PRK14430 acylphosphatase; Provisional
Probab=22.51 E-value=1e+02 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=38.0
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|.++||.+.+.+. ..+...+.=++..+.+..++..| +.||..+
T Consensus 16 GVGFR~~~~~~A~~lgl~G~VrN~------~dGsVei~~qG~~~~i~~f~~~l-~~gp~~a 69 (92)
T PRK14430 16 GVGYRAACADAADDLGLGGWVRNR------ADGTVEVMASGTVRQLEALRAWM-EAGPPAA 69 (92)
T ss_pred ceeeHHHHHHHHHHhCCEEEEEEC------CCCcEEEEEEcCHHHHHHHHHHH-HhCCCce
Confidence 566677888999999999877552 22222232346788999999999 5688643
No 170
>PRK14425 acylphosphatase; Provisional
Probab=22.47 E-value=1.1e+02 Score=27.02 Aligned_cols=54 Identities=28% Similarity=0.218 Sum_probs=38.0
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|..+||.+.+.+. .-|| ..+.=+++.+.+..++..|. .||..+
T Consensus 18 GVGFR~~v~~~A~~~gl~G~V~N~----~dGs--Vei~~qG~~~~le~f~~~l~-~gp~~a 71 (94)
T PRK14425 18 GVGFRDWTRDEAERLGLTGWVRNE----SDGS--VTALIAGPDSAISAMIERFR-RGPPGA 71 (94)
T ss_pred cccchHHHHHHHHHhCCEEEEEEC----CCCe--EEEEEEeCHHHHHHHHHHHh-hCCCce
Confidence 666677888899999999877542 1232 22222456788999999998 698654
No 171
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=21.92 E-value=98 Score=32.18 Aligned_cols=21 Identities=24% Similarity=0.009 Sum_probs=16.1
Q ss_pred CCchhhhHHHHHHHhhcCcee
Q psy18015 200 PPSVGDKLLLRLLAWKLGLKV 220 (708)
Q Consensus 200 p~~~~~k~~lr~~a~~~gi~~ 220 (708)
|-+.-.|--+|+.|+.+|++.
T Consensus 157 PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 157 PIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred ccCCCcHHHHHHHHHHHCccH
Confidence 334456778999999999985
No 172
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=21.67 E-value=34 Score=35.60 Aligned_cols=15 Identities=53% Similarity=0.689 Sum_probs=14.4
Q ss_pred CchHHHHHHHhhhcC
Q psy18015 1 GIDSTVIALLANQFV 15 (708)
Q Consensus 1 GlD~t~la~l~~~~~ 15 (708)
|+||+|+|.||++.+
T Consensus 28 GiDSav~A~La~~Al 42 (242)
T PF02540_consen 28 GIDSAVVAALAVKAL 42 (242)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999999988
No 173
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=20.96 E-value=67 Score=33.38 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=14.8
Q ss_pred CchHHHHHHHhhhcCC
Q psy18015 1 GIDSTVIALLANQFVP 16 (708)
Q Consensus 1 GlD~t~la~l~~~~~~ 16 (708)
|+||+++|+++.+..+
T Consensus 33 GiDSs~~a~la~~~~~ 48 (248)
T cd00553 33 GIDSALVAALAVRALG 48 (248)
T ss_pred cHHHHHHHHHHHHHhC
Confidence 8999999999999876
No 174
>PRK14440 acylphosphatase; Provisional
Probab=20.96 E-value=1.4e+02 Score=26.14 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=37.2
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-++..|..+||.+.+.+- .-| ...+.=+++.+.+.+++..|+ .||..+
T Consensus 15 GVGFR~~v~~~A~~~gl~G~V~N~----~dG--~Vei~~~G~~~~v~~f~~~l~-~gp~~a 68 (90)
T PRK14440 15 GVGFRKFVQIHAIRLGIKGYAKNL----PDG--SVEVVAEGYEEALSKLLERIK-QGPPAA 68 (90)
T ss_pred ccCchHHHHHHHHHcCCEEEEEEC----CCC--CEEEEEEcCHHHHHHHHHHHh-hCCCCc
Confidence 566667788899999999876542 123 222222356788999999999 788643
No 175
>PRK14438 acylphosphatase; Provisional
Probab=20.64 E-value=1.2e+02 Score=26.50 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=37.3
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|..+||.+.+.+. .-|+ + .+.=++..+.+.++++.|. .||..+
T Consensus 15 GVGFR~~~~~~A~~~gl~G~V~N~----~dG~-V-ei~~qG~~~~i~~f~~~l~-~gp~~a 68 (91)
T PRK14438 15 GVAFRHHTQQTAQRLNVSGWVKNL----PNGS-V-QGCFEGEETDVAALIDWCH-HGPSRA 68 (91)
T ss_pred CcCccHHHHHHHHHcCCEEEEEEC----CCCE-E-EEEEEECHHHHHHHHHHHh-hCCCCc
Confidence 666677888899999999876542 1232 2 2212356788999999997 798754
No 176
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=20.62 E-value=97 Score=34.31 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.1
Q ss_pred CchHHHHHHHhhhcCCCCCCeeEEeeccCC
Q psy18015 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEK 30 (708)
Q Consensus 1 GlD~t~la~l~~~~~~~~~~idLlnvafe~ 30 (708)
|+||+|+|.|+.+. ..|++-|-|.+
T Consensus 15 GVDSsvaa~LL~~~-----G~~V~~v~~~~ 39 (360)
T PRK14665 15 GTDSSVAAMLLLEA-----GYEVTGVTFRF 39 (360)
T ss_pred CHHHHHHHHHHHHc-----CCeEEEEEEec
Confidence 89999999999863 46777777765
No 177
>PRK14446 acylphosphatase; Provisional
Probab=20.26 E-value=98 Score=27.03 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-....|.++||.+...+. ..+...+.=+++.+.+..+++.|+ .||..+
T Consensus 14 GVGFR~fv~~~A~~lgl~G~V~N~------~dGsVei~~qG~~~~l~~f~~~l~-~gP~~a 67 (88)
T PRK14446 14 GVWYRASTRERAVALGLVGHARNQ------ADGSVEVVAAGSAAALEALEAWLW-QGPPAA 67 (88)
T ss_pred CeeEhHHHHHHHeeCCeEEEEEEC------CCCCEEEEEEeCHHHHHHHHHHHh-hCCCce
Confidence 566667788899999999876542 333233323456789999999999 798644
No 178
>PRK14421 acylphosphatase; Provisional
Probab=20.06 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=38.5
Q ss_pred chhhhHHHHHHHhhcCceeeecchhhhhccCccccccccCCCHHHHHHHHHhccCCCCCCC
Q psy18015 202 SVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNAPIIDVCQEAIQRRGPDSF 262 (708)
Q Consensus 202 ~~~~k~~lr~~a~~~gi~~~~~~~k~A~q~gs~i~~~~~~~~~~~l~~~l~~l~hRGpD~~ 262 (708)
|+|=.+-.+..|.++||.+.+.+- ..+...+.=+++.+.+..+++.|. .||-.+
T Consensus 16 GVGFR~fv~~~A~~lgL~G~V~N~------~dG~Vei~~~G~~~~i~~f~~~l~-~gP~~a 69 (99)
T PRK14421 16 GVGYRAWVARTAEALGLEGWVRNR------RDGSVEALFAGPADAVAEMIARCR-RGPSAA 69 (99)
T ss_pred CccchHHHHHHHHHhCCEEEEEEC------CCCEEEEEEeCCHHHHHHHHHHHH-hCCCCc
Confidence 666677888899999999877542 333233323467788999999998 788654
Done!