RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18015
(708 letters)
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 145 bits (368), Expect = 6e-37
Identities = 99/471 (21%), Positives = 169/471 (35%), Gaps = 102/471 (21%)
Query: 252 EAIQRRGPDS---FKQLTISEDCATCTFLASVR-WTQGVTISPQPLEDVDG-NVLLWNGD 306
+ ++ RGPD + L L R ++ QP+ G +++NG+
Sbjct: 25 KLLRHRGPDDSGVWISLNAL--------LGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGE 76
Query: 307 VYNFTSEDN----KTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLW 362
+YN E + SD+ +L + G ++H+ G ++F D+ ++L+
Sbjct: 77 IYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG-EDCVEHLNGMFAFAIYDETRQKLF 135
Query: 363 FGKDPIGRHSLLLKCTPTSILVTS-----VAHKSIPR---IEEIPNTHIYSVDITCPDFQ 414
+DP G L ++ S +AH + I+E+P H+
Sbjct: 136 LARDPFGVKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGG--LI 193
Query: 415 LGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLTQ 474
+ E ++ + E L LL
Sbjct: 194 RRYWRLSEKTSKESADELA--------------------------------EHLRSLLED 221
Query: 475 SVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFE 534
+V++R+ V GV SGG+DS++IA +A + + E V FE
Sbjct: 222 AVKRRLVA--DVPV-----------GVFLSGGLDSSLIAAIAAEELGK-EGKTTFTVGFE 267
Query: 535 KNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVL 594
+ + PD + + L EI ++ EL + + +V+ LDT
Sbjct: 268 DS---DSPDAKYARAVAKFL-------GTPHHEIILTNEELLNA----LPEVVKALDTPG 313
Query: 595 DDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRHCSND 654
+ ++ +R G +V+L G GADEL GGY + R
Sbjct: 314 GMAASIPLYLLSRKARAEGE-----------KVVLSGEGADELFGGYPPY---SRFAPGP 359
Query: 655 WSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLP 705
L L + I L RD+RV G ++R PFLD +V L +P
Sbjct: 360 EELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLALKIP 410
>gnl|CDD|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of aspartate
to asparagine. Asparagine synthetase B catalyzes the
assembly of asparagine from aspartate, Mg(2+)ATP, and
glutamine. The three-dimensional architecture of the
N-terminal domain of asparagine synthetase B is similar
to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase .
Length = 269
Score = 125 bits (315), Expect = 4e-32
Identities = 66/273 (24%), Positives = 98/273 (35%), Gaps = 75/273 (27%)
Query: 471 LLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLN 530
LL +V +R+R+ GVL SGG+DS+++A LA + +P +
Sbjct: 3 LLEDAVRRRLRSDV-------------PVGVLLSGGLDSSLVAALAARLLPEPVKTFSIG 49
Query: 531 VAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPL 590
FE +R + L E+ + +L + DVI+ L
Sbjct: 50 FGFE-----GSDEREYARRVAEHL-------GTEHHEVEFTPADLLA----ALPDVIWEL 93
Query: 591 DTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRH 650
D DS ++ +R + G +V+L G GADEL GGY R+R
Sbjct: 94 DEPFADSSAIPLYLLSRLARKHGI-----------KVVLSGEGADELFGGYPRYRRAPLA 142
Query: 651 CSNDWS---------------ALRAQLEHEVLNISRRN--------------------LG 675
LR +L ++ + N L
Sbjct: 143 RRRRRRLLGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLL 202
Query: 676 RDNRVVCDHGRQSRTPFLDEPVVAFLLSLPSWQ 708
RD+R HG + R PFLD +V F LSLP
Sbjct: 203 RDDRASMAHGLEVRVPFLDHRLVEFALSLPPEL 235
Score = 32.4 bits (74), Expect = 0.77
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1 GIDSTVIALLANQFVPSSEPIDLLNVAFE 29
G+DS+++A LA + +P + FE
Sbjct: 25 GLDSSLVAALAARLLPEPVKTFSIGFGFE 53
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but its
function has not yet been determined. The glutaminase
domain catalyzes an amide nitrogen transfer from
glutamine to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
This domain is related to members of the Ntn (N-terminal
nucleophile) hydrolase superfamily and is found at the
N-terminus of enzymes such as glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS). GLMS
catalyzes the formation of glucosamine 6-phosphate from
fructose 6-phosphate and glutamine in amino sugar
synthesis. GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. Asparagine synthetase B synthesizes
asparagine from aspartate and glutamine. Beta-LS
catalyzes the formation of the beta-lactam ring in the
beta-lactamase inhibitor clavulanic acid. GltS
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine. These enzymes are generally dimers, but
GPATase also exists as a homotetramer.
Length = 181
Score = 122 bits (307), Expect = 7e-32
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 253 AIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDV-DGNVLLWNGDVYNFT 311
++ RGPD +S T F +SV +G ++ QPL D GNVL WNG++YN
Sbjct: 27 NLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNGELYN-- 84
Query: 312 SEDNKTIESTSESDSLQVLQRFASH-----GVLKTLKHIQGPYSFIFLDKKNKQLWFGKD 366
E+D+ + + A+ +L L I+GP++FI+ D +L+FG+D
Sbjct: 85 ----IDGVEDEENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRD 140
Query: 367 PIGRHSLLLKCTP-TSIL-VTSVA-HKSIPRIEEIPNTHIY 404
+GR SLL K P L ++SV+ S +E+ IY
Sbjct: 141 CLGRRSLLYKLDPNGFELSISSVSGSSSGSGFQEVLAGGIY 181
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 128 bits (324), Expect = 1e-31
Identities = 99/496 (19%), Positives = 179/496 (36%), Gaps = 86/496 (17%)
Query: 231 FGSRIANSREKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTF----LASVRWTQGV 286
G + + I + I RGPD+ + LA + +
Sbjct: 2 AGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAI---LGHRRLAII----DL 54
Query: 287 TISPQPLEDVDG-NVLLWNGDVYNFTS----EDNKTIESTSESDSLQVLQRFASHGVLKT 341
+ QP+ + V+++NG++YN + K ++SD+ +L + G +
Sbjct: 55 SGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWGE-EC 113
Query: 342 LKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTSVAHKSI---PRIEEI 398
+ + G ++F D + +L+ +D G L + S K++ P I+
Sbjct: 114 VDRLDGMFAFALWDSEKGELFLARDRFGIKPLYYAYDGGQLYFASEI-KALLAHPNIKPF 172
Query: 399 PNTHIYSVDITCPDFQLGNYHPKEPSTDP-TPPEEVVDFFANVNITAGGDKAVLMKTLDT 457
P+ + P T V + ++ D + +
Sbjct: 173 PDGAALA-----------PGFGFVRVPPPSTFFRGVFELEPGHDLPLDDDGLNIERYYWE 221
Query: 458 YPLFCDN-----VAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVI 512
+ V EL LL +V++R+ V GVL SGG+DS+++
Sbjct: 222 RRDEHTDSEEDLVDELRSLLEDAVKRRLVAD-------VP------VGVLLSGGLDSSLV 268
Query: 513 ALLANQFVPSSEPIDLLNVAFEKNQNYNVPD--RLTGLSSLQELTTLCPDRQWNFVEINI 570
A +A + P P+ ++ FE + +++ R L T E+
Sbjct: 269 AAIARREAPRG-PVHTFSIGFEGSPDFDESPYARKVA----DHLGT-------EHHEVLF 316
Query: 571 SRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLL 630
S E D + +VIY L+ ++ ++ G +V+L
Sbjct: 317 SVEEGLD----ALPEVIYHLEEPTTIRASIPLYLLSKLAREDGV-----------KVVLS 361
Query: 631 GMGADELLGGYTRHRTILRHCSNDWSALRAQLEH-EVLNISRRNLGRDNRVVCDHGRQSR 689
G GADEL GGY ALR +L++ ++ L R +R+ H + R
Sbjct: 362 GEGADELFGGYLYFHEAPAA-----EALREELQYLDLELYMPGLLRRKDRMSMAHSLEVR 416
Query: 690 TPFLDEPVVAFLLSLP 705
PFLD +V + LS+P
Sbjct: 417 VPFLDHELVEYALSIP 432
>gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyze the conversion of aspartate to
asparagine.
Length = 195
Score = 118 bits (298), Expect = 2e-30
Identities = 66/242 (27%), Positives = 93/242 (38%), Gaps = 75/242 (30%)
Query: 467 ELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPI 526
EL +LL +V++R+R P G VL SGG+DS++IA LA + S P+
Sbjct: 1 ELRELLRDAVKRRLRAD--------VPVG-----VLLSGGLDSSLIAALAARQ--SDPPL 45
Query: 527 DLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDV 586
+V FE + EL EI ++ EL D + +V
Sbjct: 46 KTFSVGFE--------GSDYDEAPYAELVADHLGTD--HHEIIVTEEELLD----ALPEV 91
Query: 587 IYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRT 646
IY L+ DS ++ +R + +V+L G GADEL GGY
Sbjct: 92 IYHLEEPFGDSSAIPLYLLSRLARK------------GVKVVLSGEGADELFGGY----- 134
Query: 647 ILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLPS 706
RD+R+ HG + R PFLD +V F LSLP
Sbjct: 135 -----------------------------RDDRMSMAHGLEVRVPFLDHRLVEFALSLPP 165
Query: 707 WQ 708
Sbjct: 166 EL 167
Score = 32.2 bits (74), Expect = 0.56
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTAR---VDNTVLNV 52
G+DS++IA LA + S P+ +V FE + + E A D+ + V
Sbjct: 27 GLDSSLIAALAARQ--SDPPLKTFSVGFEGSDYDEAPYAELVADHLGTDHHEIIV 79
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 74.0 bits (182), Expect = 1e-13
Identities = 96/478 (20%), Positives = 180/478 (37%), Gaps = 108/478 (22%)
Query: 254 IQRRGPDSFKQLTISEDCATCTFLASVRWT-QGVTISPQPLEDVDGNV-LLWNGDVYNFT 311
++ RGPD + + T LA R ++ QPL D D V L+ NG++YN
Sbjct: 28 LRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQNGEIYNHW 87
Query: 312 SED----NKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDP 367
+ + +S SD + + +G H+ G ++ + D K + +D
Sbjct: 88 EIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDH 147
Query: 368 IGRHSLLLKCTPT-SILVTS---VAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEP 423
IG L + SI +S H +++ P H Y +F Y+P
Sbjct: 148 IGIIPLYIGYAKDGSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFV-RYYNPNWH 206
Query: 424 STD-PTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVRT 482
D P P E+ ++ E+ + L +V KR+
Sbjct: 207 DFDHPIPTGEI------------------------------DLEEIREALEAAVRKRLM- 235
Query: 483 QPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNVP 542
G G+ SGG+DS+++A + + + + E IDL K ++ +
Sbjct: 236 ------------GDVPFGLFLSGGLDSSIVAAIVAKLIKNGE-IDLSKRGMPKLHSFCI- 281
Query: 543 DRLTGLSSLQELTTLCPDRQWNFVEINISRRELED--QRHCH------------IKDVIY 588
GL PD + + R++ + H + DVIY
Sbjct: 282 ----GLEG-------SPDLK--------AARKVAEYLGTEHHEFTFTVEEGIDALPDVIY 322
Query: 589 PLDTVLDDSLGCAV--WFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRT 646
+T ++ + + +R + LG +++L G G+DEL GGY
Sbjct: 323 HTETYDVTTIRASTPMYLLSRRIKALGI-----------KMVLSGEGSDELFGGY----- 366
Query: 647 ILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSL 704
+ H + + +L ++ ++ + + R N+ G ++R PFLD+ + +++++
Sbjct: 367 LYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEYVMNI 424
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 69.8 bits (171), Expect = 2e-13
Identities = 41/197 (20%), Positives = 66/197 (33%), Gaps = 47/197 (23%)
Query: 253 AIQRRGPDSF----------------------KQLTISEDCATCTFLASVRW-TQGVTIS 289
A++ RGPD + E + L VR T G+
Sbjct: 26 ALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSE 85
Query: 290 P--QPLEDVDGNVLL-WNGDVYNFTSEDNKT------IESTSESDS--------LQVLQR 332
QP DG + L NG++YN+ + + ESDS +
Sbjct: 86 ANAQPFRSEDGRIALVHNGEIYNY--RELREELEARGYRFEGESDSEVILHLLERLGREG 143
Query: 333 FASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCT-PTSILVTSV--AH 389
V LK + GP++F D K +L+ +D G L T ++ S A
Sbjct: 144 GLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKAL 203
Query: 390 KSIP--RIEEIPNTHIY 404
++P + +P +
Sbjct: 204 LALPFKGVRRLPPGELL 220
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 66.9 bits (164), Expect = 2e-11
Identities = 92/443 (20%), Positives = 159/443 (35%), Gaps = 114/443 (25%)
Query: 291 QPLEDVDGN-VLLWNGDVYNFTSEDNKTIES----TSESDSLQVLQRFASHGVLKTLKHI 345
QPL + DG VL NG++YN E + + SD +L + G L +
Sbjct: 61 QPLYNEDGTHVLAVNGEIYNH-QELRAELGDKYAFQTGSDCEVILALYQEKGP-DFLDDL 118
Query: 346 QGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPT-SILVTSVAHKSIP---RIEEIPNT 401
G ++F D + +DPIG L ++ S +P I+E P
Sbjct: 119 DGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPG 178
Query: 402 HIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLF 461
H Y D + Y+ ++ D+ A +
Sbjct: 179 HYY----WSKDGEFVRYYQRDW----------FDYDAVKDNVT----------------- 207
Query: 462 CDNVAELTKLLTQSVEKRVRTQ-PSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFV 520
+ EL L +V+KR+ + P GVL SGG+DS++I+ +A ++
Sbjct: 208 --DKNELRDALEAAVKKRLMSDVP--------------YGVLLSGGLDSSLISAIAKKYA 251
Query: 521 PSSEPIDLLNVAFEKN-QNYNV-----PDRLTGLSSLQEL-----TTLCPDRQWNFVEIN 569
D + A+ ++ V PD L + +E+ T EI+
Sbjct: 252 ARRIEDDERSEAWWPQLHSFAVGLEGSPD----LKAAREVADHLGTVHH--------EIH 299
Query: 570 ISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAV-------WFAARGVGRLGSCDYTSPRS 622
+ +E D ++DVIY L+T ++ + A G+
Sbjct: 300 FTVQEGLDA----LRDVIYHLETYDVTTIRASTPMYLMARKIKAMGI------------- 342
Query: 623 EERRVLLLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVC 682
+++L G GADEL GGY N + ++ + + R N+ +
Sbjct: 343 ---KMVLSGEGADELFGGY----LYFHKAPNAK-EFHEETVRKLRALHMYDCLRANKAMM 394
Query: 683 DHGRQSRTPFLDEPVVAFLLSLP 705
G ++R PFLD+ + + +
Sbjct: 395 AWGVEARVPFLDKEFLDVAMRIN 417
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 61.7 bits (150), Expect = 7e-10
Identities = 113/500 (22%), Positives = 185/500 (37%), Gaps = 163/500 (32%)
Query: 257 RGPDSFKQLTISEDCATCTFLASVRWTQGVTISP----QPLEDVDGN-VLLWNGDVYNFT 311
RGPD L +EDC +LA R + P QPL + D V+ NG++YN
Sbjct: 31 RGPDWSG-LYGNEDC----YLAHERLA---IMDPESGDQPLYNEDKTIVVTANGEIYNHK 82
Query: 312 S--EDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIG 369
E K + + SD + + HG + + + G +SF+ LD ++ +D IG
Sbjct: 83 ELREKLKLHKFRTGSDCEVIAHLYEEHGE-EFVDMLDGMFSFVLLDTRDNSFIAARDHIG 141
Query: 370 RHSLLLKCTPTSI---LVTSVAHKS--------IPRIEEIPNTHIYSVDITCPDFQLGN- 417
TP I L SV S R EE P H YS + G
Sbjct: 142 I-------TPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYYSS-------KAGGF 187
Query: 418 ---YHPK-EPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLT 473
Y+P + P+ P + PL L +
Sbjct: 188 RRWYNPPWFSESIPSTPYD--------------------------PL------VLREAFE 215
Query: 474 QSVEKRVRTQ-PSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVA 532
++V KR+ T P GVL SGG+DS+++A +A + + ++ A
Sbjct: 216 KAVIKRLMTDVP--------------FGVLLSGGLDSSLVASIAARHLAETK------AA 255
Query: 533 FEKNQNYNVPDRLTGLSSLQELTTLC------PDRQWNFVEINISRRELEDQ---RHCH- 582
+ Q+L + C PD + RE+ D H H
Sbjct: 256 RQWG---------------QQLHSFCVGLEGSPDL--------KAAREVADYLGTVH-HE 291
Query: 583 -----------IKDVIYPLDTVLDDSLGCAV--WFAARGVGRLGSCDYTSPRSEERRVLL 629
I+DVIY L+T ++ + + +R + LG +++L
Sbjct: 292 FHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGV-----------KMVL 340
Query: 630 LGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSR 689
G G+DE+ GGY + H + + + ++ + + + R N+ G ++R
Sbjct: 341 SGEGSDEIFGGY-----LYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEAR 395
Query: 690 TPFLDEPVVAFLLSL-PSWQ 708
PFLD+ + +S+ P W+
Sbjct: 396 VPFLDKEFIDVAMSIDPEWK 415
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 53.6 bits (130), Expect = 9e-09
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 291 QPLEDVDGN-VLLWNGDVYNFTS--ED--NKTIESTSESDSLQVLQRFASHGVLKTLKHI 345
QP+ DG V+++NG++YN+ + K + SD+ +V+ L +
Sbjct: 14 QPMVSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDT-EVILHLYEEWGEDCLDRL 72
Query: 346 QGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTS 386
G ++F D++ +L+ +D G L +L S
Sbjct: 73 NGMFAFAIWDRREGRLFLARDRFGIKPLYYGKDGGGLLFAS 113
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes, such as asparagine
synthetase and glutamine--fructose-6-phosphate
transaminase.
Length = 130
Score = 51.1 bits (123), Expect = 9e-08
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 259 PDSFKQLTISEDCATCTFLASVRW-TQGV-TISPQPLEDVDGNVLL-WNGDVYNF--TSE 313
PD F L + A L VR + QP+ DG ++L NG++YNF E
Sbjct: 1 PD-FSGLWVDGGIA----LGHVRLAIVDLSEAGAQPMLSADGRLVLVHNGEIYNFGELRE 55
Query: 314 DN--KTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRH 371
+ K S SDS +L + G L+ ++G ++F DK+ K L+ +D +G
Sbjct: 56 ELPAKGHAFRSRSDSEVLLALYEEWGE-DALERLRGMFAFAIWDKRRKTLFLARDRLGIK 114
Query: 372 SLLLKCTPTSILVTS 386
L T +L S
Sbjct: 115 PLYYGVTGGGLLFAS 129
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia.
Length = 220
Score = 46.4 bits (111), Expect = 1e-05
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 252 EAIQRRGPDSFKQLTISEDCATCTFLASVR-WTQGVTISPQPLEDVDGN-VLLWNGDVYN 309
+A+ RGPD + I E A L R ++ QP+ DG VL++NG++YN
Sbjct: 24 DALAHRGPDGS-GIWIDEGVA----LGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYN 78
Query: 310 F----TSEDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGK 365
+ + + SD+ +L + G L+ + G ++F DK+ ++L+ +
Sbjct: 79 YRELRAELEALGHRFRTHSDTEVILHLYEEWGE-DCLERLNGMFAFALWDKRKRRLFLAR 137
Query: 366 DPIGRHSLLLKCTPTSILVTS-----VAHKSIPR 394
D G L + S +A +PR
Sbjct: 138 DRFGIKPLYYGRDGGGLAFASELKALLALPGVPR 171
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide (EPS)
regions that contain the exosortase 1 genome (xrtA), in
genomes that also have numbers of PEP-CTERM domain
(TIGR02595) proteins.
Length = 628
Score = 46.7 bits (111), Expect = 3e-05
Identities = 87/392 (22%), Positives = 142/392 (36%), Gaps = 107/392 (27%)
Query: 289 SPQPLEDVDGNV-LLWNGDVYNFTSEDNKTIEST-----SESDSLQVLQRFASHGVLKTL 342
QPL + DG+V +++NG++YNF E +++ + SD+ ++ + G +
Sbjct: 59 GQQPLFNEDGSVVVVFNGEIYNF-QELVAELQALGHVFRTRSDTEVIVHAWEEWGE-ACV 116
Query: 343 KHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPT------SILVTSVAHKSIPRIE 396
+ +G ++F D+ + L+ +D +G L S L AH S+PR
Sbjct: 117 ERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPR-- 174
Query: 397 EIPNTHIYSVD-ITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTL 455
+D + D+ Y P +P T F V G L +
Sbjct: 175 --------ELDPLAVEDYFAYGYVP-DPRT----------IFKGVKKLEPGHTLTLRRGA 215
Query: 456 DTYPLFC---------------DNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTG 500
C D +AEL + L ++V S V V G
Sbjct: 216 PPARPRCYWDVSFAPAAPLSEADALAELIERLREAVR-------SRMVADV------PLG 262
Query: 501 VLFSGGIDST-VIALLANQFVPSSEPIDLLNVAF------EKNQNYNVPDRLTGLSSLQE 553
SGG+DS+ V+AL+A S P++ ++AF E V +R +
Sbjct: 263 AFLSGGVDSSAVVALMAGL---SDTPVNTCSIAFDDPAFDESAYARQVAER---YGTNHR 316
Query: 554 LTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLG 613
+ T+ PD +F ++ R + D + + L C AR
Sbjct: 317 VETVDPD---DFSLVD---------RLAGLYDEPFADSSALPTYRVCE---LAR------ 355
Query: 614 SCDYTSPRSEERRVLLLGMGADELLGGYTRHR 645
+ V L G G DEL GY R+R
Sbjct: 356 ---------KRVTVALSGDGGDELFAGYRRYR 378
>gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group..
Length = 103
Score = 35.2 bits (81), Expect = 0.018
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 501 VLFSGGIDSTVIALLANQFVP 521
V FSGG DS+V A L +
Sbjct: 3 VAFSGGKDSSVAAALLKKLGY 23
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 35.5 bits (82), Expect = 0.041
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 501 VLFSGGIDSTVIALLANQFVPSSEPIDLL 529
V FSGG DSTV+ LA + +P +P+ ++
Sbjct: 4 VSFSGGKDSTVLLHLALKALPELKPVPVI 32
>gnl|CDD|223676 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General
function prediction only].
Length = 222
Score = 35.3 bits (82), Expect = 0.074
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 496 HCKTGVLFSGGIDSTVIALLA 516
K VL SGG+DST A
Sbjct: 2 MKKAVVLLSGGLDSTTCLAWA 22
>gnl|CDD|219067 pfam06510, DUF1102, Protein of unknown function (DUF1102). This
family consists of several hypothetical archaeal
proteins of unknown function.
Length = 144
Score = 33.6 bits (77), Expect = 0.12
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 46 DNTVLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEVNGLKEHKWKRNISICP 105
+N L + N N N P GLS P+ + F E+ + W+ IC
Sbjct: 23 NNGKLTIDISPN-NPNYPGYGDGLS---------PNSTYVFDEMFNVSNELWENGYPICV 72
Query: 106 ILKSYHP 112
+KS +
Sbjct: 73 TIKSQND 79
>gnl|CDD|237484 PRK13728, PRK13728, conjugal transfer protein TrbB; Provisional.
Length = 181
Score = 32.4 bits (74), Expect = 0.45
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 115 PSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLF 153
P P PP+ + FF N+ + V + TL+ PL
Sbjct: 116 PEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLL 154
Score = 32.4 bits (74), Expect = 0.45
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 423 PSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLF 461
P P PP+ + FF N+ + V + TL+ PL
Sbjct: 116 PEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLL 154
>gnl|CDD|238953 cd01995, ExsB, ExsB is a transcription regulator related protein.
It is a subfamily of a Adenosine nucleotide binding
superfamily of proteins. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In Rhizobium
meliloti, a species in which the exo genes make
succinoglycan, a symbiotically important
exopolysaccharide, exsB is located nearby and affects
succinoglycan levels, probably through polar effects on
exsA expression or the same polycistronic mRNA. In
Arthrobacter viscosus, the homologous gene is designated
ALU1 and is associated with an aluminum tolerance
phenotype. The function is unknown.
Length = 169
Score = 31.8 bits (73), Expect = 0.62
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 501 VLFSGGIDSTVIALLA 516
VL SGG+DST A
Sbjct: 4 VLLSGGLDSTTCLAWA 19
>gnl|CDD|238942 cd01984, AANH_like, Adenine nucleotide alpha hydrolases superfamily
including N type ATP PPases, ATP sulphurylases
Universal Stress Response protein and electron transfer
flavoprotein (ETF). The domain forms a apha/beta/apha
fold which binds to Adenosine nucleotide.
Length = 86
Score = 29.7 bits (67), Expect = 0.98
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 501 VLFSGGIDSTVIALLANQFV 520
V SGG+DS+V+ LA +
Sbjct: 3 VALSGGLDSSVLLHLAKRLK 22
>gnl|CDD|219066 pfam06508, ExsB, ExsB. This family includes putative
transcriptional regulators from Bacteria and Archaea.
Length = 137
Score = 30.6 bits (70), Expect = 1.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 501 VLFSGGIDSTVIALLA 516
VLFSGG DST A
Sbjct: 4 VLFSGGQDSTTCLAWA 19
>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 31.9 bits (73), Expect = 1.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 598 LGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELL 638
L ARGVG + + D+ S ERR L L MGAD ++
Sbjct: 175 LAVIAALKARGVGPIVASDF----SPERRALALAMGADIVV 211
>gnl|CDD|184745 PRK14561, PRK14561, hypothetical protein; Provisional.
Length = 194
Score = 31.3 bits (72), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 498 KTGVLFSGGIDSTVIALLANQF 519
K GVLFSGG DS++ A+L +F
Sbjct: 2 KAGVLFSGGKDSSLAAILLERF 23
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 31.2 bits (71), Expect = 1.7
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 501 VLFSGGIDSTVIALLANQFVPSSEPIDL--LNVAFEKNQNYNVPDRLTGLSSLQELTTLC 558
V FSGG DSTV+ LA + P + L+ + + Y DRL L
Sbjct: 44 VSFSGGKDSTVLLHLAAKAFP---DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100
Query: 559 PDRQW-NFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWF 604
D ++ C I+ V PL LD+ G WF
Sbjct: 101 DDEVAEGEKYGGKLWEPSVERWCCDIRKVE-PLKRALDE-YGFDAWF 145
>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP synthetase
has several large insertions relative to prokaryotes.
Length = 295
Score = 31.0 bits (71), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 498 KTGVLFSGGIDSTVIALLANQ 518
K + SGG+DSTV A+L ++
Sbjct: 1 KVILALSGGVDSTVAAVLLHK 21
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family
amidotransferase. Members of this protein family are
closely related to several isoforms of asparagine
synthetase (glutamine amidotransferase) and typically
have been given this name in genome annotation to date.
Each is part of a conserved three-gene cassette sparsely
distributed across at least twenty different species
known so far, including alpha, beta, and gamma
Proteobacteria, Mycobacterium, and Prosthecochloris,
which is a member of the Chlorobi. The other two members
of the cassette are a probable protease and a member of
the GNAT family of acetyltransferases.
Length = 589
Score = 30.8 bits (70), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 498 KTGVLFSGGIDSTVI-ALLANQFVPSSEPIDLL--NVAFE 534
GVL SGG+DS++I LLA V L ++ FE
Sbjct: 262 PVGVLLSGGLDSSLIVGLLAEAGVD-----GLRTFSIGFE 296
Score = 29.7 bits (67), Expect = 6.6
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 22/94 (23%)
Query: 289 SPQPLEDVD-GNVLLWNGDVYNFTSEDNKTIESTSESDSLQVLQRFASHG----VLKT-- 341
S QP+ D + G L++NG +YN+ E +E ++L RF S G +LK
Sbjct: 59 SQQPMVDPELGLALVFNGCIYNYR-------ELRAELEALG--YRFFSDGDTEVILKAYH 109
Query: 342 ------LKHIQGPYSFIFLDKKNKQLWFGKDPIG 369
+ G ++F ++ + +L +D +G
Sbjct: 110 AWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLG 143
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism].
Length = 268
Score = 30.7 bits (70), Expect = 2.6
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 496 HCKTGVL-FSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNV--PDRLTGLSSLQ 552
K VL SGGIDS ++ LA + + + NV V P T + +
Sbjct: 24 GFKGVVLGLSGGIDSALVLALAVRALG--KGDSKENV-------LAVRLPYGYTVQADEE 74
Query: 553 ELTTLCPDRQWNFVEINIS 571
+ L ++ EINI
Sbjct: 75 DAQDLAEALGIDYKEINIK 93
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source .
Length = 248
Score = 30.2 bits (69), Expect = 2.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 504 SGGIDSTVIALLANQFVPS 522
SGGIDS ++A LA + +
Sbjct: 31 SGGIDSALVAALAVRALGR 49
>gnl|CDD|129461 TIGR00364, TIGR00364, queuosine biosynthesis protein QueC. Members
of this protein family are QueC, involved in
synthesizing pre-Q0 from GTP en route to tRNA
modification with queuosine. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In Rhizobium
meliloti, the gene was designated exsB, possibly because
of polar effects on exsA expression in a shared
polycistronic mRNA. In Arthrobacter viscosus, the
homologous gene was designated ALU1 and was associated
with an aluminum tolerance phenotype [Unknown function,
General].
Length = 201
Score = 30.1 bits (68), Expect = 3.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 501 VLFSGGIDSTVIALLA 516
V+ SGG DST +A
Sbjct: 3 VVLSGGQDSTTCLAIA 18
>gnl|CDD|225762 COG3221, PhnD, ABC-type phosphate/phosphonate transport system,
periplasmic component [Inorganic ion transport and
metabolism].
Length = 299
Score = 30.4 bits (69), Expect = 3.5
Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 25/139 (17%)
Query: 124 EVVDFFANVNITAGGDKAVLM---KTLDTYPLFCDNVAELTKLLTQSVEKRVR----TQP 176
+ FF V + G D AVL +D + L K + V +++R +
Sbjct: 172 DPDKFFGEVIFSGGHDAAVLAVANGQVDVAAVNSSARGLLKKAAPEGVAEKLRVIWKSPL 231
Query: 177 SHCVQCVEPCGHCKTGVLFSDDLPPSVGDKLLLRL--LAWKLGLKVAASLPKRALQFGSR 234
+ DLP + +KL LA K+ L
Sbjct: 232 I--------PND---PIAVRSDLPADLKEKLRDAFLDLAKTEDKKIL-----LDLYGLGG 275
Query: 235 IANSREKGNAPIIDVCQEA 253
R+ PI D +E
Sbjct: 276 FVEVRDDDYKPIRDAVKEL 294
>gnl|CDD|223558 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 356
Score = 30.3 bits (69), Expect = 3.8
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 18/44 (40%)
Query: 498 KTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNV 541
K V SGG+DS+V A L K Q Y V
Sbjct: 5 KVLVGMSGGVDSSVAAYLL------------------KEQGYEV 30
>gnl|CDD|131094 TIGR02039, CysD, sulfate adenylyltransferase, small subunit.
Metabolic assimilation of sulfur from inorganic sulfate,
requires sulfate activation by coupling to a nucleoside,
for the production of high-energy nucleoside
phosphosulfates. This pathway appears to be similar in
all prokaryotic organisms. Activation is first achieved
through sulfation of sulfate with ATP by sulfate
adenylyltransferase (ATP sulfurylase) to produce
5'-phosphosulfate (APS), coupled by GTP hydrolysis.
Subsequently, APS is phosphorylated by an APS kinase to
produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In
Escherichia coli, ATP sulfurylase is a heterodimer
composed of two subunits encoded by cysD and cysN, with
APS kinase encoded by cysC. These genes are located in a
unidirectionally transcribed gene cluster, and have been
shown to be required for the synthesis of
sulfur-containing amino acids. Homologous to this E.coli
activation pathway are nodPQH gene products found among
members of the Rhizobiaceae family. These gene products
have been shown to exhibit ATP sulfurase and APS kinase
activity, yet are involved in Nod factor sulfation, and
sulfation of other macromolecules [Central intermediary
metabolism, Sulfur metabolism].
Length = 294
Score = 30.1 bits (68), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 501 VLFSGGIDSTVIALLANQ-FVPSSEPIDLLNV 531
+L+S G DS+V+ LA + F P P LL+V
Sbjct: 24 MLYSIGKDSSVLLHLARKAFYPGPLPFPLLHV 55
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 30.1 bits (68), Expect = 4.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 503 FSGGIDSTVIALLANQFVPSSEPI 526
FSGG DS+V LLA + +P E I
Sbjct: 188 FSGGKDSSVSTLLAKEVIPDLEVI 211
>gnl|CDD|220916 pfam10962, DUF2764, Protein of unknown function (DUF2764). This
bacterial family of proteins has no known function.
Length = 271
Score = 29.6 bits (67), Expect = 4.6
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 12/59 (20%)
Query: 28 FEKNQNYNTHWTEFTARV-----------DNTVLNVAFEKN-QNYNVPDRLTGLSSLQE 74
FE N N F AR D VL V + +++ +P+ L L
Sbjct: 141 FEFNLNLRNILAAFRARKLGWDVSYVLVGDPEVLEVLRTSDARDFELPEEFDYLRDLLR 199
>gnl|CDD|238845 cd01712, ThiI, ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the
Adenosine Nucleotide Hydrolysis suoerfamily and
predicted to bind to Adenosine nucleotide.
Length = 177
Score = 29.1 bits (66), Expect = 5.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 501 VLFSGGIDSTVIALLA 516
L SGGIDS V A L
Sbjct: 4 ALLSGGIDSPVAAWLL 19
>gnl|CDD|238948 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus.
Length = 202
Score = 29.5 bits (67), Expect = 5.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 501 VLFSGGIDSTVIALLA 516
V FSGG+DST++ A
Sbjct: 3 VAFSGGVDSTLLLKAA 18
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 29.3 bits (66), Expect = 5.9
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 23/91 (25%)
Query: 310 FTSEDNKTIESTSESDSLQVLQRF----ASHGVLKTL---KHIQGPYSFIFLDKKNK--- 359
F SE + E+ S+ + L +++R+ HG+L L KHI + +D K
Sbjct: 62 FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121
Query: 360 -------QLWFGKDPIGRHSLLLKCTPTSIL 383
LW G +++ CTP I+
Sbjct: 122 FHPMNTGHLWSG------RPVMIPCTPAGIM 146
>gnl|CDD|182581 PRK10600, PRK10600, nitrate/nitrite sensor protein NarX;
Provisional.
Length = 569
Score = 29.6 bits (67), Expect = 6.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 10 LANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQ 58
L + VPS + I LL +A E N H A+ V+ VA +NQ
Sbjct: 457 LPPRLVPSHQAIHLLQIAREALSNALKH-----AQASEVVVTVAQNQNQ 500
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
Length = 265
Score = 29.4 bits (67), Expect = 6.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 504 SGGIDSTVIALLA 516
SGGIDS V+A LA
Sbjct: 38 SGGIDSAVVAYLA 50
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 29.3 bits (66), Expect = 9.5
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 304 NGDVYNFTS-----EDNKTIESTSESDSLQVLQRFASH-------GVLKTLKHIQGPYSF 351
NG++ N+ E+N +I +TS SD+ +L A ++ + ++G YS
Sbjct: 102 NGNLVNYEELRAKLEENGSIFNTS-SDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSM 160
Query: 352 IFLDKKNKQLWFGKDPIGRHSLLLKC 377
+FL +L +DP G L++
Sbjct: 161 VFL--TEDKLVAVRDPHGFRPLVMGR 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,795,933
Number of extensions: 3471222
Number of successful extensions: 2938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2910
Number of HSP's successfully gapped: 61
Length of query: 708
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 604
Effective length of database: 6,324,786
Effective search space: 3820170744
Effective search space used: 3820170744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)