RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18015
(708 letters)
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 114 bits (287), Expect = 7e-27
Identities = 89/478 (18%), Positives = 161/478 (33%), Gaps = 96/478 (20%)
Query: 245 PIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGN-VLLW 303
++ RGPD L+ V V QPL + VL
Sbjct: 18 KKALELSRLMRHRGPDWSGIYASDNAILAHERLSIV----DVNAGAQPLYNQQKTHVLAV 73
Query: 304 NGDVYNFT---SEDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQ 360
NG++YN +E + + SD +L + G + L +QG ++F D +
Sbjct: 74 NGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGP-EFLDDLQGMFAFALYDSEKDA 132
Query: 361 LWFGKDPIGRHSLLLKCTPT-SILVTSVAHKSI----PRIEEIPNTHIYSVD---ITCPD 412
G+D +G L + + V S K++ I+E P I
Sbjct: 133 YLIGRDHLGIIPLYMGYDEHGQLYVASEM-KALVPVCRTIKEFPAGSYLWSQDGEIRSY- 190
Query: 413 FQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLL 472
YH D + EL + L
Sbjct: 191 -----YHRDWFDYDAVKDNV------------------------------TDKNELRQAL 215
Query: 473 TQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVA 532
SV+ + + GVL SGG+DS++I+ + ++ + A
Sbjct: 216 EDSVKSHLMSD-------------VPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEA 262
Query: 533 FEKNQNYNVPDRLTGLSSLQELT---TLCPDRQWNFVEINISRRELEDQRHCHIKDVIYP 589
+ + GL +L + EI+ + +E D I+DVIY
Sbjct: 263 W----WPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLD----AIRDVIYH 314
Query: 590 LDT--VLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTI 647
++T V ++ +R + ++ +++L G G+DE+ GGY
Sbjct: 315 IETYDVTTIRASTPMYLMSRKI-----------KAMGIKMVLSGEGSDEVFGGYLYF--- 360
Query: 648 LRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLP 705
H + + L + ++L + + R N+ + G ++R PFLD+ + + +
Sbjct: 361 --HKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRIN 416
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 108 bits (272), Expect = 5e-25
Identities = 63/482 (13%), Positives = 127/482 (26%), Gaps = 118/482 (24%)
Query: 253 AIQRRGPDSFKQLTISEDCAT------CTFLASVRWTQGVTISPQPLEDVDGNVLLWNGD 306
+ GP + + ++ L + L + G+
Sbjct: 20 GGRAPGPVFATRGSHTDIDTPQGERSLAATLVHAPSVAPDRAVARSLTGAPT-TAVLAGE 78
Query: 307 VYNFTSEDNKTIEST--SESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFG 364
+YN E + + E D+ VL+ + + + + G ++ + ++
Sbjct: 79 IYNRD-ELLSVLPAGPAPEGDAELVLRLLERYDL-HAFRLVNGRFATVVRTGD--RVLLA 134
Query: 365 KDPIG------------------RHSLLLKCTPTSILVTSVAHKSIPR-IEEIPNTHIYS 405
D G +L P + + + ++P +
Sbjct: 135 TDHAGSVPLYTCVAPGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMD 194
Query: 406 VDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNV 465
+D+ S P E V
Sbjct: 195 IDLGSGTAVTHRTWTPGLSRRILPEGEAVA------------------------------ 224
Query: 466 AELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEP 525
+ L ++V +RV P V+ SGGIDS+ +A A++
Sbjct: 225 -AVRAALEKAVAQRVTP-------GDTP------LVVLSGGIDSSGVAACAHRAAG---E 267
Query: 526 IDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKD 585
+D +++ + + + + L T EI I EL +
Sbjct: 268 LDTVSMGTDTSNEFREARAVV-----DHLRT-------RHREITIPTTELLA----QLPY 311
Query: 586 VIYPLDT--VLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTR 643
++ ++ + R + R +L G GAD LGG R
Sbjct: 312 AVWASESVDPDIIEYLLPLTALYRAL------------DGPERRILTGYGADIPLGGMHR 359
Query: 644 HRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLS 703
+ + + + G + P+ D V+ L+S
Sbjct: 360 EDRLPALDTVLAHDMATF---------DGLNEMSPVLSTLAGHWTTHPYWDREVLDLLVS 410
Query: 704 LP 705
L
Sbjct: 411 LE 412
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 106 bits (267), Expect = 2e-24
Identities = 62/477 (12%), Positives = 127/477 (26%), Gaps = 96/477 (20%)
Query: 253 AIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGNVLLWNGDVYNF-- 310
+ +G D+ + L++ Q E G L G +YN
Sbjct: 6 CVVYKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYL-IGSLYNRTF 64
Query: 311 --TSEDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPI 368
E+ +D+ + F G L +G + F +D+ N +L +
Sbjct: 65 LIGLAGVWEGEAYLANDAELLALLFTRLGA-NALALAEGDFCFF-IDEPNGELTVITESR 122
Query: 369 G-----------------RHSLLLKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCP 411
G + ++ A + T + +
Sbjct: 123 GFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQR--- 179
Query: 412 DFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKL 471
+ G H ++ E +L + +A + +
Sbjct: 180 -LKPGAVHVLTHDSEGYSFVESRTLTTPA------SNQLLALPREPL------LALIDRY 226
Query: 472 LTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNV 531
L +E G+ SGG+DS+++ LA++ ++ ++
Sbjct: 227 LNAPLEDLAPRF-------DT------VGIPLSGGLDSSLVTALASRHFK---KLNTYSI 270
Query: 532 AFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLD 591
E + + ++ L T + +S E+ + I + IY +
Sbjct: 271 GTELSNEFEFSQQVA-----DALGT-------HHQMKILSETEVIN----GIIESIYYNE 314
Query: 592 TVLDDSLGCAV--WFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILR 649
S + R + +L G G+D L GG +
Sbjct: 315 IFDGLSAEIQSGLFNVYRQA------------QGQVSCMLTGYGSDLLFGGILKPG---- 358
Query: 650 HCSNDWSALRAQLEH-EVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSLP 705
E + +R +G R PF +++ +L
Sbjct: 359 -----AQYDNPNQLLAEQVYRTRWTGEFATHGASCYGIDIRHPFWSHSLISLCHALH 410
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 4e-14
Identities = 86/531 (16%), Positives = 153/531 (28%), Gaps = 195/531 (36%)
Query: 261 SFKQLTISEDCATCTFL--------ASVRWTQGVTISPQPLEDVDGNVLLWNGDVYNFTS 312
S + LT+S L AS Q I P+P E F +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE--------------GFAA 50
Query: 313 EDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFI---FLDKKNKQLWFGKDPIG 369
+D E T+ +++ +F + G + + L + G D I
Sbjct: 51 DD----EPTTP---AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-I- 101
Query: 370 RHSL---LLKCTPTSILVT-----------SVAHKSIPRIEE--------IPNTHIYSVD 407
H+L LL+ T+++ T +A + + N + ++
Sbjct: 102 -HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI- 159
Query: 408 ITCPDF--QLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNV 465
F Q GN EE+ D + TY + V
Sbjct: 160 -----FGGQ-GNTD--------DYFEELRDLY------------------QTYHVL---V 184
Query: 466 AELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEP 525
+L K +++ + +RT +F+ G++ ++ L N PS+ P
Sbjct: 185 GDLIKFSAETLSELIRTTLD-------------AEKVFTQGLN--ILEWLEN---PSNTP 226
Query: 526 -IDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHC--- 581
D L + P L G+ L + F + EL
Sbjct: 227 DKDYLLSIP-----ISCP--LIGVIQLAHYVVTA--KLLGF-----TPGELRSYLKGATG 272
Query: 582 HIKDVIYPL-----DT------VLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLL 630
H + ++ + D+ + ++ + R C P + L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-------CYEAYPNTS----LPP 321
Query: 631 GMGADEL----------LG--GYTRHRTILRHCSNDWSALRAQL-EHEVLNISRRNLGRD 677
+ D L L T+ + + + + L + + IS N G
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQ-EQVQDYV----NKTNSHLPAGKQVEISLVN-GAK 375
Query: 678 NRVVC-------------------DHGRQSRTPFLDEPVV---AFL-LSLP 705
N VV QSR PF + + FL ++ P
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 60.8 bits (147), Expect = 1e-09
Identities = 89/564 (15%), Positives = 157/564 (27%), Gaps = 185/564 (32%)
Query: 191 TGVLFSDDLPPSVGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIANSREKGNA----PI 246
T +DD P + + L+ + L + +++ E +
Sbjct: 45 TEGFAADDEPTTPAE-----LVG-------------KFLGY---VSSLVEPSKVGQFDQV 83
Query: 247 IDVCQEAIQR---RGPD--SF-KQLTISEDCATCTFLASVR-WTQGVTISPQP------- 292
+++C + G D + +L D ++ + ++ +P
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 293 --LEDV-DGNVLLW-------NGDVYNFTSEDNKTIESTSESDSLQVLQRFASHGVLKTL 342
V +GN L N D Y F E+ + + T +++ A L L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDY-F--EELRDLYQTYHVLVGDLIKFSAET--LSEL 198
Query: 343 KHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLL-LKCTPTS---ILVTSVAHKSIPRIEEI 398
+F N W ++P L P S I V +AH
Sbjct: 199 IRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDYLLSIPISCPLIGVIQLAH--------- 248
Query: 399 PNTHIYSVDITCPDFQLGNYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTL--- 455
Y V T +L + P E + + G + ++
Sbjct: 249 -----YVV--TA---KLLGFTPGE-------------LRSYLKGATGHSQGLVTAVAIAE 285
Query: 456 -DTYPLFCDNVAELTKLL------TQSVEKRVRTQPSHCVQCVEPCGHCKTGV---LFS- 504
D++ F +V + +L PS +E GV + S
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NE---GVPSPMLSI 341
Query: 505 -GGIDSTVIALLA--NQFVPSSEP--IDLLNVAFEKNQNYNV---PDRLTGL-SSLQELT 555
V + N +P+ + I L+N A +N V P L GL +L++
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLVVSGPPQSLYGLNLTLRKAK 397
Query: 556 TLCPDRQWNFVEINISRRELEDQR---------------HCHI-KDVIYPLDTVLDD--- 596
P ++ SR +R H H+ D + D
Sbjct: 398 --APS------GLDQSRIPF-SERKLKFSNRFLPVASPFHSHLLVPAS---DLINKDLVK 445
Query: 597 --------SLGCAVWFAARG----------VGRLGSCDYTSP-------RSEERRVLLLG 631
+ V+ G R+ C P + + +L G
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 632 MGADELLGGYTRH-------RTIL 648
G LG T R I+
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIV 529
Score = 50.4 bits (120), Expect = 2e-06
Identities = 76/463 (16%), Positives = 124/463 (26%), Gaps = 173/463 (37%)
Query: 10 LANQFVPSSEPIDLLNVAFEKN---------Q-NYNTHWTE-------FTARVDNTVLNV 52
+A + L E N Q N + ++ E + V + +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 53 AFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEVNGLKEHKWKRN------------ 100
A +L EL D + F + GL +W N
Sbjct: 192 A----------------ETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLS 233
Query: 101 --ISICPI-----LKSYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTL----DT 149
IS CP+ L Y TP E + + G + ++ D+
Sbjct: 234 IPIS-CPLIGVIQLAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 150 YPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSDDL-----PPS-- 202
+ F +V + +L VR ++ + P + D L PS
Sbjct: 289 WESFFVSVRKAITVLFFIG---VRCYEAYPNTSLPP-------SILEDSLENNEGVPSPM 338
Query: 203 -----VGDKLLLRLLAWKLGLKVAASLPKRALQFGSRIA----NSR-------------- 239
+ + + + K + LP G ++ N
Sbjct: 339 LSISNLTQEQVQDYVN-----KTNSHLPA-----GKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 240 -----EKGNAPIIDVCQEAIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTI---SP- 290
K AP Q R P S ++L S FL V S
Sbjct: 389 LNLTLRKAKAP-----SGLDQSRIPFSERKLKFSN-----RFLP-------VASPFHSHL 431
Query: 291 -QP-----LEDVDGNVLLWNGD-----VYNFTSEDNKTIESTSESDSLQVLQRFASHGVL 339
P +D+ N + +N VY+ + D + S S S +++ V
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 340 --KTLK----HIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLLK 376
T + HI LD FG +L
Sbjct: 490 WETTTQFKATHI--------LD-------FGPGGASGLGVLTH 517
Score = 48.9 bits (116), Expect = 6e-06
Identities = 45/292 (15%), Positives = 83/292 (28%), Gaps = 100/292 (34%)
Query: 359 KQLWFGKDPIGRH-------SLL--LKCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDIT 409
+ +W + H S+L + P ++ + K RI E + I+
Sbjct: 1643 QDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-KRIRENYSAMIF----- 1693
Query: 410 CPDFQLGNYHPKEPSTDPTPPEEVVDFFANVN-----ITAGGDKAVLMKTLDTYP-LFCD 463
E D E + F +N T +K +L T T P L
Sbjct: 1694 ------------ETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 464 NVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGH---------CKTGVL-FS--------- 504
A + ++ + GH V+
Sbjct: 1740 EKA-----AFEDLKSKGLIPADATF-----AGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 505 -------------GGIDSTVIALLANQFVPS--SEPIDLL--NVAFEKNQ-----NYNVP 542
G + +IA+ + S E + + V NYNV
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 543 DR---LTG-LSSLQELTTLCPDRQWNFVEI-NISRRELEDQRHC-HIKDVIY 588
++ G L +L +T + NF+++ I EL+ ++ ++
Sbjct: 1850 NQQYVAAGDLRALDTVTNVL-----NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 40.4 bits (94), Expect = 0.002
Identities = 42/278 (15%), Positives = 77/278 (27%), Gaps = 100/278 (35%)
Query: 97 WKR---------NISICPILKSYHPKEPSTDPTPP--------------EEVVD------ 127
W R SI I+ + P + E +VD
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 128 -FFANVN-----ITAGGDKAVLMKTLDTYP-LFCDNVAELTKLLTQSVEKRVRTQPSHCV 180
F +N T +K +L T T P L A + ++ +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-----AFEDLKSKGLIPADATF 1759
Query: 181 QCVEPCGH---------CKTGVL-FSDDLPPSVGDKLLLRLLAWKLGLKVAASLPKRAL- 229
GH V+ L+ ++ G+ + ++P+ L
Sbjct: 1760 -----AGHSLGEYAALASLADVMSIES----------LVEVVF-YRGMTMQVAVPRDELG 1803
Query: 230 --QFG------SRIANSREKGNAPIIDVCQEAIQRRG----------PDSFKQLTISEDC 271
+G R+A S + + V + +R G + Q + D
Sbjct: 1804 RSNYGMIAINPGRVAASFSQ--EALQYVVERVGKRTGWLVEIVNYNVENQ--QYVAAGDL 1859
Query: 272 ----ATCTFLASVRWTQGVTISPQP----LEDVDGNVL 301
L ++ Q + I LE+V+G++
Sbjct: 1860 RALDTVTNVLNFIK-LQKIDIIELQKSLSLEEVEGHLF 1896
Score = 38.1 bits (88), Expect = 0.010
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 35/113 (30%)
Query: 6 VIALLANQFVPSSEPIDLLNVAFEKNQNYNTHWTEFTARVDNTVLNVAFEKNQNYNVPDR 65
+IA+ + S L V E + ++ + NYNV ++
Sbjct: 1809 MIAINPGRVAASFSQEALQYVV------------ERVGKRTGWLVEIV-----NYNVENQ 1851
Query: 66 ---LTG-LSSLQELTTLCPDRQWNFVEVNGLKEHKWKRNISICPILKSYHPKE 114
G L +L +T + L K + I I + KS +E
Sbjct: 1852 QYVAAGDLRALDTVTNV-------------LNFIK-LQKIDIIELQKSLSLEE 1890
Score = 37.0 bits (85), Expect = 0.024
Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 73/194 (37%)
Query: 7 IALL--ANQFVPSSEPIDL--LNVAFEK-------NQN---------------------Y 34
I+L+ A V S P L LN+ K +Q+ +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 35 NTHW-TEFTARVDNTVLNVAFEKNQNY-NVP--DRLTGLSSLQELTTLCPDR--QWNFVE 88
++H + ++ ++ N +P D G S L+ L+ +R
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRL 486
Query: 89 -VNGLKEHKWKRNISICPILKSYHPKEPSTDPTPPEEVVDF----------FANVNITAG 137
V W +T ++DF + N
Sbjct: 487 PVK------W-----------------ETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 138 GDKAVLMKTLDTYP 151
G + ++ TLD P
Sbjct: 524 GVRVIVAGTLDINP 537
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 3e-13
Identities = 79/559 (14%), Positives = 151/559 (27%), Gaps = 183/559 (32%)
Query: 31 NQNYNTHW------TEFTARVDNTVL-----NVAFEKNQ---NYNVPDRLTGLSSLQELT 76
NY + TE T + + + NQ YNV RL L++
Sbjct: 88 RINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQ-- 142
Query: 77 TLCPDRQWNFVEVNG-------------LKEHKWKRNISICPI----LKSYHPKEPSTDP 119
L R V ++G +K + + I LK+ +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNS------- 194
Query: 120 TPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNV-AELTKLLTQSVEKR------- 171
PE V++ + + L ++ AEL +LL +
Sbjct: 195 --PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 172 VRTQPSHCVQCVEPCGHCKT------------------GVLFSDDLPPSVGDKLLLRLLA 213
V+ + CK + D ++ + LL
Sbjct: 253 VQN--AKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 214 WKLGLKVAASLPKRALQ--------FG-------SRIANSREKGNAP---IIDVCQEAIQ 255
L + LP+ L + N + II+ ++
Sbjct: 309 KYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 256 RRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGNVLLWNGDVYNFTSEDN 315
P ++++ + + F S I L L+W
Sbjct: 368 ---PAEYRKMF--DRLS--VFPPSAH------IPTILLS------LIWFDV--------- 399
Query: 316 KTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDPIGRHSLLL 375
+SD + V+ + +L ++K+ K+ I S+ L
Sbjct: 400 ------IKSDVMVVVNKLHK----YSL-----------VEKQPKES-----TISIPSIYL 433
Query: 376 KCTPTSILVTSVAHKSIPRIEEIPNTHIYSVDITCPD------FQ-LGNYHPKEPSTDPT 428
+ ++ H+SI ++ + D P + +G +H K
Sbjct: 434 ELKVKLENEYAL-HRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIE---- 485
Query: 429 PPEEVVDFFANV----------------NITAGGDKAVLMKTLDTY-PLFCDNVAELTKL 471
E + F V A G ++ L Y P CDN + +L
Sbjct: 486 -HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 472 LTQSVEKRVRTQPSHCVQC 490
+ ++ + + +
Sbjct: 545 V-NAILDFLPKIEENLICS 562
Score = 59.5 bits (143), Expect = 3e-09
Identities = 65/528 (12%), Positives = 143/528 (27%), Gaps = 170/528 (32%)
Query: 237 NSREKGNAPIIDVCQEAIQRRG-----PDSFKQLTISEDCATCTFLASVRWTQGVTISPQ 291
+ I+ V ++A D K + E+ + +S
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------------DHIIMSKD 59
Query: 292 PLEDVDGNVLLWNGDVYNFTSEDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSF 351
+ L W T+ S E +++Q+F VL+ Y F
Sbjct: 60 AVSGTL--RLFW-------------TLLSKQE----EMVQKFVE-EVLRI------NYKF 93
Query: 352 I-----------------FLDKKNKQLW-----FGKDPIGRHSL-------LLKCTPT-- 380
+ +++++++ L+ F K + R LL+ P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 381 -----------SILVTSVAHKSIPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTP 429
+ + V +++ + I+ ++ L N +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLN-------LKNCNS--------- 194
Query: 430 PEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNV-AELTKLLTQSVEKR-------VR 481
PE V++ + + L ++ AEL +LL + V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 482 TQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNV 541
+ CK + V L+ + +D ++ ++ ++
Sbjct: 255 N--AKAWNAFN--LSCKILLTTR---FKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSL 306
Query: 542 --------PDRL-----TG----LSSLQELTTLCPDRQWNFVE----------INISRRE 574
P L T LS + E W+ + I S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNV 365
Query: 575 LE--DQRHCHIKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSE----ERRVL 628
LE + R + ++P + L +WF + + L
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV---------IKSDVMVVVNKLHKYSL 416
Query: 629 LLGMGADELLGGYTRHRTILRHCSNDWSALRAQLEHEVLNISRRNLGR 676
+ + + + + + N+ L H + + N+ +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENE-----YAL-HRSI-VDHYNIPK 457
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 40.6 bits (95), Expect = 8e-04
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 498 KTGVLFSGGIDSTVIALLANQF 519
VLFSGG DS++ A++ +
Sbjct: 8 DVHVLFSGGKDSSLSAVILKKL 29
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 35.1 bits (80), Expect = 0.065
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 501 VLFSGGIDSTVIALLANQ-FVPSSEPIDLLNV 531
+L+S G DS V+ LA + F P P +++V
Sbjct: 51 MLYSIGKDSAVMLHLARKAFFPGKLPFPVMHV 82
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 33.5 bits (77), Expect = 0.19
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 495 GHCKTGVL-FSGGIDSTVIALLA 516
K+ VL SGG DST+ L
Sbjct: 38 PFIKSLVLGISGGQDSTLAGKLC 60
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics, JOIN for structural
genomics; 2.40A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.26.2.1
Length = 232
Score = 32.7 bits (75), Expect = 0.33
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 501 VLFSGGIDSTVIALLA 516
V+FSGG DST + A
Sbjct: 7 VVFSGGQDSTTCLIQA 22
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Length = 219
Score = 32.3 bits (74), Expect = 0.34
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 501 VLFSGGIDSTVIALLA 516
V+FSGG DST L A
Sbjct: 8 VVFSGGQDSTTCLLWA 23
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 2.40A {Vibrio cholerae}
Length = 279
Score = 31.6 bits (72), Expect = 0.66
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 496 HCKTGVL-FSGGIDSTVIALLA 516
K+ VL SGG+DST LA
Sbjct: 39 RYKSLVLGISGGVDSTTCGRLA 60
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 31.0 bits (71), Expect = 0.98
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 496 HCKTGVL-FSGGIDSTVIALLA 516
+ V+ SGGIDS V A LA
Sbjct: 28 PAEGFVIGLSGGIDSAVAASLA 49
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 31.0 bits (71), Expect = 1.0
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 496 HCKTGVL-FSGGIDSTVIALLA 516
K VL SGG DST+ LA
Sbjct: 37 GAKGFVLGISGGQDSTLAGRLA 58
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 31.2 bits (71), Expect = 1.0
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 496 HCKTGVL-FSGGIDSTVIALLA 516
+ VL SGGIDS+ LA
Sbjct: 45 GLRACVLGISGGIDSSTAGRLA 66
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 29.5 bits (66), Expect = 3.8
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 501 VLFSGGIDSTVIALLANQFVPSSEPIDLLNV--AFEKNQNYNVPDRLT---GLSSLQELT 555
+ G+ V + ++ +LL + Q + + + Q +
Sbjct: 46 QTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIH 105
Query: 556 TLCPDR---QWNFVEINISR-RELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAAR 607
PD + +F E +D ++ ++ V P + A F R
Sbjct: 106 VYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVE-PAHRAYKELHISA-VFTGR 159
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 29.8 bits (67), Expect = 3.9
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 591 DTVLDDSLGCAVWFAARGVG--------RLGSCDYTSPRSEERRVLLLGMGADELLGGYT 642
D VL +W A+ G+G G S ++ + +G D ++
Sbjct: 222 DIVL-------IWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVI---N 271
Query: 643 RHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHG 685
R + D + ++ + GR+ +V +H
Sbjct: 272 RAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHT 314
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 29.1 bits (66), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 504 SGGIDSTVIALLA 516
SGG+DS V+ +L
Sbjct: 33 SGGLDSAVVGVLC 45
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 29.1 bits (66), Expect = 4.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 504 SGGIDSTVIALLA 516
SGG+DS +A LA
Sbjct: 30 SGGVDSATVAYLA 42
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 29.1 bits (66), Expect = 4.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 504 SGGIDSTVIALLA 516
SGGIDS ++A L
Sbjct: 34 SGGIDSALVATLC 46
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 28.9 bits (65), Expect = 6.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 491 VEPCGHCKTGVLFSGGIDSTVIALLA 516
V G + SGGIDS ++A +A
Sbjct: 321 VAKNGFRSVLIGLSGGIDSALVAAIA 346
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 28.5 bits (64), Expect = 8.3
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 510 TVIALLANQFVPSSEPIDLLNVAFEKNQNY-NVPDRLTGLSSLQEL 554
+ + FV + N E Q Y + L L ++
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 28.1 bits (63), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 503 FSGGIDSTVIALLANQFVPSSEPIDL 528
FSGG+DSTV+ Q+ + + L
Sbjct: 20 FSGGLDSTVLLHQLVQWRTENPGVAL 45
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1
d.133.1.1 PDB: 1sb3_A*
Length = 769
Score = 28.3 bits (64), Expect = 9.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 392 IPRIEEIPNTHIYSVDITCPDFQLGNYHPK---EPSTDPTPP 430
+P I E P+ + V+ P+ G K E P
Sbjct: 696 VPTIVESPDIEVIIVESMDPNGPFGA---KEASEGMLAGFLP 734
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,767,810
Number of extensions: 642598
Number of successful extensions: 1492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 42
Length of query: 708
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 608
Effective length of database: 3,909,693
Effective search space: 2377093344
Effective search space used: 2377093344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)