RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18015
(708 letters)
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 67.7 bits (164), Expect = 8e-13
Identities = 47/246 (19%), Positives = 94/246 (38%), Gaps = 32/246 (13%)
Query: 463 DNVAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPS 522
+ EL + L SV+ + GVL SGG+DS++I+ + ++
Sbjct: 14 TDKNELRQALEDSVKSHLM-------------SDVPYGVLLSGGLDSSIISAITKKYAAR 60
Query: 523 SEPIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCH 582
+ A+ + L G L+ + EI+ + +E D
Sbjct: 61 RVEDQERSEAWWPQLHSFAVG-LPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLD----A 115
Query: 583 IKDVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYT 642
I+DVIY ++T ++ + ++ +++L G G+DE+ GGY
Sbjct: 116 IRDVIYHIETYDVTTIRASTPM---------YLMSRKIKAMGIKMVLSGEGSDEVFGGYL 166
Query: 643 RHRTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLL 702
H + + L + ++L + + R N+ + G ++R PFLD+ + +
Sbjct: 167 YF-----HKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAM 221
Query: 703 SLPSWQ 708
+
Sbjct: 222 RINPQD 227
Score = 29.2 bits (64), Expect = 1.9
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 1 GIDSTVIALLANQFVPSSEPIDLLNVAFEKNQNYNT 36
G+DS++I+ + ++ + A+ +
Sbjct: 44 GLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFA 79
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 53.5 bits (127), Expect = 3e-08
Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 51/243 (20%)
Query: 465 VAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSE 524
VA + L ++V +RV P V+ SGGIDS+ +A A++
Sbjct: 14 VAAVRAALEKAVAQRVTP-------GDTP------LVVLSGGIDSSGVAACAHRAAG--- 57
Query: 525 PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIK 584
+D +++ + + +E + + EI I EL Q +
Sbjct: 58 ELDTVSMGTDTSNE------------FREARAVVDHLRTRHREITIPTTELLAQLPYAVW 105
Query: 585 DVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRH 644
+ + R + T GAD LGG R
Sbjct: 106 ASESVDPDI--IEYLLPLTALYRALDGPERRILTG------------YGADIPLGGMHRE 151
Query: 645 RTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSL 704
+ + + + G + P+ D V+ L+SL
Sbjct: 152 DRLPALDTVLAHDMATFDGLNE---------MSPVLSTLAGHWTTHPYWDREVLDLLVSL 202
Query: 705 PSW 707
+
Sbjct: 203 EAG 205
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 52.3 bits (124), Expect = 8e-08
Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 50/244 (20%)
Query: 465 VAELTKLLTQSVEKRVRTQPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFVPSSE 524
+A + + L +E G+ SGG+DS+++ LA++ +
Sbjct: 15 LALIDRYLNAPLEDLAPR-------------FDTVGIPLSGGLDSSLVTALASRH---FK 58
Query: 525 PIDLLNVAFEKNQNYNVPDRLTGLSSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIK 584
++ ++ E + + + + + +S E+ I
Sbjct: 59 KLNTYSIGTELSNEFEFSQQ------------VADALGTHHQMKILSETEV----INGII 102
Query: 585 DVIYPLDTVLDDSLGCAVWFAARGVGRLGSCDYTSPRSEERRVLLLGMGADELLGGYTRH 644
+ IY + S + + +L G G+D L GG +
Sbjct: 103 ESIYYNEIFDGLSAEIQSGL----------FNVYRQAQGQVSCMLTGYGSDLLFGGILKP 152
Query: 645 RTILRHCSNDWSALRAQLEHEVLNISRRNLGRDNRVVCDHGRQSRTPFLDEPVVAFLLSL 704
N L E + +R +G R PF +++ +L
Sbjct: 153 G---AQYDNPNQLL-----AEQVYRTRWTGEFATHGASCYGIDIRHPFWSHSLISLCHAL 204
Query: 705 PSWQ 708
Sbjct: 205 HPDY 208
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 36.5 bits (83), Expect = 0.005
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 13/164 (7%)
Query: 252 EAIQRRGPDSFKQLTISEDCATCTFLASVRWTQGVTISPQPLEDVDGN-VLLWNGDVYNF 310
++ RGPD L V QPL + VL NG++YN
Sbjct: 25 RLMRHRGPDWSGIYASDNAILAHERL----SIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80
Query: 311 TS---EDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFGKDP 367
+ E + + SD +V+ + L +QG ++F D + G+D
Sbjct: 81 QALRAEYGDRYQFQTGSDC-EVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDH 139
Query: 368 IGRHSLLLKCTPTSILVTSVAHKSI----PRIEEIPNTHIYSVD 407
+G L + L + K++ I+E P
Sbjct: 140 LGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLWSQ 183
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 359
Score = 34.4 bits (78), Expect = 0.046
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 98 KRNISICPILKSYHPKEPSTDPTPPEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNV 157
++NI + PI + E T E A G + ++L+ PLF +
Sbjct: 263 RKNILLVPIAFTSDHIE--TLYELDIEYSQVLAK---ECGVENIRRAESLNGNPLFSKAL 317
Query: 158 AELTKLLTQSVEKRVRTQPSHCVQCVEPC 186
A+L QS E + C CV P
Sbjct: 318 ADLVHSHIQSNELCSKQLTLSCPLCVNPV 346
Score = 32.5 bits (73), Expect = 0.18
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 444 AGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQCVEPC 494
G + ++L+ PLF +A+L QS E + C CV P
Sbjct: 296 CGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPV 346
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 33.4 bits (75), Expect = 0.068
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 498 KTGVLFSGGIDSTVIALLA 516
+ V+FSGG DST + A
Sbjct: 3 RAVVVFSGGQDSTTCLIQA 21
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 32.6 bits (74), Expect = 0.097
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 17/125 (13%)
Query: 254 IQRRGPDSFKQLTISEDCA-----TCTFLASVRWTQGVTISPQPLEDVDGNVLLWNGDVY 308
+ +G D+ I D + Q E + G +Y
Sbjct: 6 VVYKGSDTDINN-IQRDFDGKGEALSNGYLFIEQNGHY----QKCEM-ERGTAYLIGSLY 59
Query: 309 NFTSEDN----KTIESTSESDSLQVLQRFASHGVLKTLKHIQGPYSFIFLDKKNKQLWFG 364
N T E+ +D+ + F G L +G + F D+ N +L
Sbjct: 60 NRTFLIGLAGVWEGEAYLANDAELLALLFTRLGA-NALALAEGDFCFFI-DEPNGELTVI 117
Query: 365 KDPIG 369
+ G
Sbjct: 118 TESRG 122
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 32.6 bits (73), Expect = 0.11
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 501 VLFSGGIDSTVIALLANQ 518
VL SGGIDS V A L +
Sbjct: 9 VLLSGGIDSPVAAYLTMK 26
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 32.9 bits (74), Expect = 0.14
Identities = 14/116 (12%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 420 PKEPSTDPTPPEEVVDFFANV---------------NITAGGDKAVLMKTLDTYPLFCDN 464
P +P E+++ + ++ + + C
Sbjct: 43 PATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIG 102
Query: 465 VAELTKLLTQSVEKRVRTQPSHCVQCVEPC----GHCKTGVLFSGGIDSTVIALLA 516
+ +E + +Q E GV+ ++T++ALLA
Sbjct: 103 FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLA 158
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.5 bits (73), Expect = 0.15
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 491 VEPCGHCKTGVL-FSGGIDSTVIALLA 516
++ K+ VL SGG DST+ L
Sbjct: 33 LQTYPFIKSLVLGISGGQDSTLAGKLC 59
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 31.6 bits (71), Expect = 0.23
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 289 SPQPLEDVDGNVLLWNGDVYNFTS-EDNKTIESTSESDSLQVLQRFASHGVLKTLKHIQG 347
+ L + G++YN E D+ VL+ + L + + G
Sbjct: 59 VARSLTG-APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERYD-LHAFRLVNG 116
Query: 348 PYSFIFLDKKNKQLWFGKDPIGRHSLLLKCTPTSILVTS 386
++ + ++ D G L P + ++
Sbjct: 117 RFATVVRT--GDRVLLATDHAGSVPLYTCVAPGEVRAST 153
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 29.8 bits (67), Expect = 0.40
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 296 VDGNVLLWNGDVYNFTSEDNKTIESTSESDSLQVLQRFASHGVLKTLK-HIQGPYSF 351
V + + + +++ T+ + + V H + T +F
Sbjct: 31 VSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITF 87
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 30.5 bits (67), Expect = 0.41
Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 9/130 (6%)
Query: 498 KTGVLFSGGIDSTVIALLANQ---------FVPSSEPIDLLNVAFEKNQNYNVPDRLTGL 548
K + +SGG+D+++I + + ++ + + L
Sbjct: 2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
Query: 549 SSLQELTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLGCAVWFAARG 608
+ P + V R K ++ + +++
Sbjct: 62 KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
Query: 609 VGRLGSCDYT 618
R Y
Sbjct: 122 QVRFELTAYA 131
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 30.7 bits (68), Expect = 0.59
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 497 CKTGVL-FSGGIDSTVIALLANQ 518
K V SGG+DS V+ +L +
Sbjct: 23 FKKVVYGLSGGLDSAVVGVLCQK 45
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 29.6 bits (65), Expect = 0.81
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 498 KTGVLFSGGIDSTVIALLA 516
+ G+ FSGG+D++ L
Sbjct: 12 RIGIAFSGGLDTSAALLWM 30
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 29.7 bits (65), Expect = 0.82
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 492 EPCGHCKTGVLFSGGIDSTVIALLANQ 518
E G K + SGG+DS+V A+L ++
Sbjct: 16 EQVGDDKVILGLSGGVDSSVTAMLLHR 42
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 29.7 bits (65), Expect = 0.88
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 498 KTGVLFSGGIDSTVIALLANQ 518
K + +SGG+D++VI +
Sbjct: 3 KVVLAYSGGLDTSVILKWLCE 23
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 29.9 bits (67), Expect = 0.99
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 7/98 (7%)
Query: 430 PEEVVDFFANVNITAGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVR-------T 482
+E N G +L+ T +AE+ +
Sbjct: 70 GDEEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMFDKVDYIRLDTPSSRRGNFEA 129
Query: 483 QPSHCVQCVEPCGHCKTGVLFSGGIDSTVIALLANQFV 520
+ G ++ SGG+D + L
Sbjct: 130 LIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGA 167
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 392 IPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPP 430
+P I E P+ + V+ P+ G E P
Sbjct: 563 VPTIVESPDIEVIIVESMDPNGPFGAKEASEGMLAGFLP 601
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 28.5 bits (62), Expect = 2.1
Identities = 29/210 (13%), Positives = 57/210 (27%), Gaps = 16/210 (7%)
Query: 501 VLFSGGIDSTVIALLANQFVPSSEPIDLLNV-------AFEKNQNYNVPDRLTGLSSLQE 553
V FSGG+DSTV+ Q+ + + L + A + +
Sbjct: 18 VAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLV 77
Query: 554 LTTLCPDRQWNFVEINISRRELEDQRHCHIKDVIYPLDTVLDDSLG-CAVWFAARGVGRL 612
+ + ++ +E + + + + LDD +
Sbjct: 78 VERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAG 137
Query: 613 GSCDYTSPRSEERRVLLLGMGADELLGGYTRHRTILRH----CSNDWSALRAQLEHEVLN 668
S R++ + + LR + D S R L V+
Sbjct: 138 LSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVP 197
Query: 669 -ISRRNLGRDNRVV--CDHGRQSRTPFLDE 695
+ +R + + LDE
Sbjct: 198 LLQQRWPHFAEATARSAALCAEQES-LLDE 226
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 28.5 bits (62), Expect = 2.6
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 501 VLFSGGIDSTVIALL-ANQFVPSSEPIDLLNVAFEKN--QNYNVPDRLTGLSSLQELTTL 557
+L+S G DS V+ L F P P +++V + Y D++ L +T +
Sbjct: 31 MLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHI 90
Query: 558 CPDRQWNFVEINISRRELEDQRHCH 582
PD +
Sbjct: 91 NPDGVAQGINPFTHGSAKHTDIMKT 115
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 27.6 bits (60), Expect = 4.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 504 SGGIDSTVIALLA 516
SGG DST+ LA
Sbjct: 46 SGGQDSTLAGRLA 58
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 28.0 bits (61), Expect = 4.9
Identities = 7/39 (17%), Positives = 9/39 (23%)
Query: 392 IPRIEEIPNTHIYSVDITCPDFQLGNYHPKEPSTDPTPP 430
+P E P P +G E P
Sbjct: 587 LPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVP 625
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 27.6 bits (60), Expect = 5.8
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 6/42 (14%)
Query: 392 IPRIEEIPNTHIYSVDITCPDFQLGNYHPK---EPSTDPTPP 430
IP ++P+ I ++ P K E + P
Sbjct: 548 IPTTLDVPDIRIRHLETPSPL---VPGGIKGMGESAMISAPA 586
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 356
Score = 27.4 bits (60), Expect = 6.1
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 136 AGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQC 182
DK ++L+ F + +A+L K QS + P
Sbjct: 293 EYKDKFKRCESLNGNQTFIEGMADLVKSHLQSNQLYSNQLPLDFALG 339
Score = 27.4 bits (60), Expect = 6.1
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 444 AGGDKAVLMKTLDTYPLFCDNVAELTKLLTQSVEKRVRTQPSHCVQC 490
DK ++L+ F + +A+L K QS + P
Sbjct: 293 EYKDKFKRCESLNGNQTFIEGMADLVKSHLQSNQLYSNQLPLDFALG 339
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,648,987
Number of extensions: 125033
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 30
Length of query: 708
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 616
Effective length of database: 1,144,436
Effective search space: 704972576
Effective search space used: 704972576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)