BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18016
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32P84|TM258_BOVIN Transmembrane protein 258 OS=Bos taurus GN=TMEM258 PE=3 SV=1
Length = 79
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|P61166|TM258_MOUSE Transmembrane protein 258 OS=Mus musculus GN=Tmem258 PE=2 SV=1
Length = 79
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|P61165|TM258_HUMAN Transmembrane protein 258 OS=Homo sapiens GN=TMEM258 PE=1 SV=1
Length = 79
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|Q76LT9|TM258_CHICK Transmembrane protein 258 OS=Gallus gallus GN=TMEM258 PE=3 SV=1
Length = 79
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|Q6DDB3|TM258_XENTR Transmembrane protein 258 OS=Xenopus tropicalis GN=tmem258 PE=3
SV=1
Length = 79
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|Q6GP81|TM258_XENLA Transmembrane protein 258 OS=Xenopus laevis GN=tmem258 PE=3 SV=1
Length = 79
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 64/71 (90%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FFTAWFFVYEVTSTK +RD+ KEL+I+LVA+LF
Sbjct: 4 EAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG LFLLLW
Sbjct: 64 MGFGVLFLLLW 74
>sp|Q6PBS6|TM258_DANRE Transmembrane protein 258 OS=Danio rerio GN=tmem258 PE=3 SV=1
Length = 79
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
E+M RY SPVNPA+FPHLT++LL IG+FF AWFFVYEVTSTK +RD+ KEL+IALVA+LF
Sbjct: 4 EAMTRYTSPVNPAVFPHLTVVLLAIGMFFKAWFFVYEVTSTKYTRDVYKELLIALVASLF 63
Query: 68 SGFGTLFLLLW 78
GFG FLLLW
Sbjct: 64 MGFGVHFLLLW 74
>sp|Q9VVA8|TM258_DROME Transmembrane protein 258 homolog OS=Drosophila melanogaster
GN=CG9669 PE=1 SV=1
Length = 78
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 8 ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRD--LVKELVIALVAA 65
+ MQRYVSPVNPA+FPHL +LL IG FFTAWFF++ V S K S++ L+KEL+I+L A+
Sbjct: 2 DVMQRYVSPVNPAVFPHLATVLLVIGTFFTAWFFIF-VVSRKSSKESTLIKELLISLCAS 60
Query: 66 LFSGFGTLFLLL 77
+F GFG +FLLL
Sbjct: 61 IFLGFGIVFLLL 72
>sp|Q965T1|TM258_CAEEL Transmembrane protein 258 homolog OS=Caenorhabditis elegans
GN=Y57E12AM.1 PE=3 SV=1
Length = 79
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 5 INYESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVA 64
++ M RY +PVN A P LT L G+G+ A F + +VTSTK +R+L+KEL IA +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 65 ALFSGFGTLFLLLW 78
++F GFG++FLLLW
Sbjct: 61 SVFLGFGSVFLLLW 74
>sp|Q60WL8|TM258_CAEBR Transmembrane protein 258 homolog OS=Caenorhabditis briggsae
GN=CBG19073 PE=3 SV=1
Length = 79
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 5 INYESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVA 64
++ M RY +PV+ + P L +L G+G+ A F + +VTSTK +R++ KEL IA +
Sbjct: 1 MDISKMDRYAAPVHFSSLPLLATVLCGVGLLLLAAFTMLQVTSTKYNRNVFKELFIAATS 60
Query: 65 ALFSGFGTLFLLLW 78
++F GFG++FLLLW
Sbjct: 61 SIFLGFGSVFLLLW 74
>sp|Q54J38|TM258_DICDI Transmembrane protein 258 homolog OS=Dictyostelium discoideum
GN=DDB_G0288325 PE=3 SV=1
Length = 76
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 13 YVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAAL 66
Y SP++ +P L IG F A F V E+T+ K +++ +EL +AL+A++
Sbjct: 6 YTSPLDIVFYPVCAFLFCVIGFAFFATFIVSEMTTAKAQKNIFRELTLALIASM 59
>sp|Q47536|YAIP_ECOLI Uncharacterized protein YaiP OS=Escherichia coli (strain K12)
GN=yaiP PE=4 SV=2
Length = 398
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 20 AIFPHLTILLLGIGIFFTAWF 40
+IFP L ++L G+GI+ T WF
Sbjct: 274 SIFPMLLVVLYGVGIYLTTWF 294
>sp|Q9JJI6|PIGO_MOUSE GPI ethanolamine phosphate transferase 3 OS=Mus musculus GN=Pigo
PE=1 SV=2
Length = 1093
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 11 QRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAAL 66
+R ++P+ P P L +LL+ + FF+ FFV E +T L+ LV LVA L
Sbjct: 537 KRPLAPLLPVPRPVLILLLIRLATFFSDSFFVVEARATPF---LLGSLVFFLVAQL 589
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,110,740
Number of Sequences: 539616
Number of extensions: 834334
Number of successful extensions: 2938
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2924
Number of HSP's gapped (non-prelim): 25
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)