RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18016
         (78 letters)



>gnl|CDD|147446 pfam05251, UPF0197, Uncharacterized protein family (UPF0197).
          This family of proteins is functionally
          uncharacterized.
          Length = 77

 Score =  101 bits (253), Expect = 2e-30
 Identities = 55/71 (77%), Positives = 61/71 (85%)

Query: 8  ESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALF 67
          E MQRYVSPVNPA+FPHL  +LLGIG FFTAWFFVYEVTSTK  R L KEL+I+LVA++F
Sbjct: 2  EKMQRYVSPVNPAVFPHLATVLLGIGTFFTAWFFVYEVTSTKYERVLFKELLISLVASIF 61

Query: 68 SGFGTLFLLLW 78
           GFG LFLLLW
Sbjct: 62 LGFGILFLLLW 72


>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
           ion transport and metabolism].
          Length = 304

 Score = 31.5 bits (72), Expect = 0.020
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 25  LTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALVAALFSGFGTLFLLLW 78
           L  L++ I IF   +  + E     +S   V+  ++AL  AL S      L  +
Sbjct: 83  LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRY 136


>gnl|CDD|132062 TIGR03017, EpsF, chain length determinant protein EpsF.  Sequences
           in this family of proteins are members of the chain
           length determinant family (pfam02706) which includes the
           wzc protein from E.coli. This family of proteins are
           homologous to the EpsF protein of the methanolan
           biosynthesis operon of Methylobacillus species strain
           12S. The distribution of this protein appears to be
           restricted to a subset of exopolysaccharide operons
           containing a syntenic grouping of genes including a
           variant of the EpsH exosortase protein. Exosortase has
           been proposed to be involved in the targetting and
           processing of proteins containing the PEP-CTERM domain
           to the exopolysaccharide layer.
          Length = 444

 Score = 27.5 bits (61), Expect = 0.57
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 18/80 (22%)

Query: 2   QSTINYESMQRYVSPVNPAIFPH------------LTILL---LGIGIFFTAWFFVYEVT 46
           Q+ I  +S Q  +S +NPA+ P             L+I L   LGIG  F A      V 
Sbjct: 367 QTRIEAQSNQTDISILNPAVPPLEPSSPRLLLNLVLSIFLGMLLGIGFAFLAELMDRRVR 426

Query: 47  STKLSRDLVKELVIALVAAL 66
           S     D+++ L + ++A +
Sbjct: 427 SAD---DIIEALDVPVLATI 443


>gnl|CDD|191388 pfam05849, L-fibroin, Fibroin light chain (L-fibroin).  This family
           consists of several moth fibroin light chain (L-fibroin)
           proteins. Fibroin of the silkworm, Bombyx mori, is
           secreted into the lumen of posterior silk gland (PSG)
           from the surrounding PSG cells as a molecular complex
           consisting of a heavy (H)-chain of approximately 350
           kDa, a light (L)-chain of 25 kDa and a P25 of about 27
           kDa. The H- and L-chains are disulfide-linked but P25 is
           associated with the H-L complex by non-covalent force.
          Length = 245

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 13  YVSPVNPAIFPHLTILLLGIG 33
            V+ V   +   +  +L  I 
Sbjct: 205 PVTQVFQTVLGSIMNVLRAIA 225


>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family. 
          Length = 658

 Score = 25.9 bits (58), Expect = 2.4
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 22  FPHLTILLLGIGIFFTAWF 40
            P L  LLL   +   A+ 
Sbjct: 276 MPTLPFLLLAALLGGLAYR 294


>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
          Length = 697

 Score = 25.1 bits (56), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 22  FPHLTILLLGIGIFFTAWF 40
            PHL  LLL   + F A+ 
Sbjct: 307 MPHLPFLLLAGLLGFLAYR 325


>gnl|CDD|222484 pfam13974, YebO, YebO-like protein.  This short protein is
          uncharacterized. It seems likely to be of phage origin
          as it is found in Bacteriophage HK022 Gp20 and
          Bacteriophage HK97 Gp15. The protein is also found in a
          variety of enteric bacteria.
          Length = 80

 Score = 24.2 bits (53), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 25 LTILLLGIGIFFTAWFFV 42
          L I+++G  I    WFFV
Sbjct: 1  LGIIIIGALIGLIVWFFV 18


>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein.
          Length = 756

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 18  NPAIFPH-----LTILLLGIGIFFTAWFFV---YEVTSTKLSRDLVKELVIALVAALFSG 69
           N A+FP      + + L+G+   +T W F+   + V S  +S+   +  + A  + LFS 
Sbjct: 560 NSALFPKGVYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWR--IKATSSWLFSI 617

Query: 70  FGTLFLLL 77
              +  LL
Sbjct: 618 QDIILKLL 625


>gnl|CDD|179207 PRK01024, PRK01024, Na(+)-translocating NADH-quinone reductase
           subunit B; Provisional.
          Length = 503

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 26  TILLLGIGIFFTAWFF 41
           T+L  G+G FFTAW F
Sbjct: 383 TMLSFGLGAFFTAWLF 398


>gnl|CDD|224355 COG1438, ArgR, Arginine repressor [Transcription].
          Length = 150

 Score = 24.1 bits (53), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)

Query: 43 YEVTSTKLSRDLVKEL 58
           EVT   +SRDL KEL
Sbjct: 35 IEVTQATVSRDL-KEL 49


>gnl|CDD|218112 pfam04497, Pox_E2-like, Poxviridae protein.  This family of
           proteins is restricted to Poxviridae. It contains a
           number of differently named uncharacterized proteins.
          Length = 727

 Score = 24.3 bits (53), Expect = 7.9
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 5   INYESMQRYVSPVNPAIFPH-----LTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELV 59
           + Y  +  YVS     +FP         +L    + +     +Y +T  +   D ++E +
Sbjct: 609 VEYLDLGNYVSNKYALVFPLNNYHAKINILFNTILEYIVAGSLYRLTVLR-RSDNIREFI 667

Query: 60  IALVAALFSGFGT 72
             L+ A   G G 
Sbjct: 668 SKLINAFLEGLGI 680


>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain.  MAN1 is an integral
           protein of the inner nuclear membrane which binds to
           chromatin associated proteins and plays a role in
           nuclear organisation. The C terminal nucleoplasmic
           region forms a DNA binding winged helix and binds to
           Smad. This C-terminal tail is also found in S.
           cerevisiae and is thought to consist of three conserved
           helices followed by two downstream strands.
          Length = 326

 Score = 24.4 bits (53), Expect = 8.4
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 24  HLTILLLGIGIFFTAWFFVYEVTSTKLSR-----DLVKE 57
              +LLLG+ I     F++      K        +LVK+
Sbjct: 209 RYRLLLLGLIILLLVVFYIRYRIKKKREEKAQVEELVKK 247


>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family.  Members of this
           family are integral membrane proteins, that are found to
           increase tolerance to divalent metal ions such as
           cadmium, zinc, and cobalt. These proteins are thought to
           be efflux pumps that remove these ions from cells.
          Length = 273

 Score = 24.2 bits (53), Expect = 8.8
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 7   YESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVY------EVTSTKLSRDLVKEL-- 58
           YES++R +SP        L + L+ + +      ++          S+ L  D +  L  
Sbjct: 78  YESIERLISPEEIEPGGILLVALISLVVNLLLALYLRRAGRKIGKKSSALRADALHALVD 137

Query: 59  VIALVAALFSGFGTLFL 75
           V+  +A L      L  
Sbjct: 138 VLGSLAVLIGLLLILLT 154


>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
           semialdehyde dehydrogenase and related proteins.  ALDH
           subfamily which includes the NAD+-dependent,
           alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
           EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
           ALDH7B or delta-1-piperideine-6-carboxylate
           dehydrogenase (P6CDH), and other similar sequences, such
           as the uncharacterized aldehyde dehydrogenase of
           Candidatus kuenenia AldH (locus CAJ73105).
          Length = 478

 Score = 24.1 bits (53), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 58  LVIALVAALFSGFGT 72
           L +A+ A LF+  GT
Sbjct: 260 LDLAVRAVLFAAVGT 274


>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 696

 Score = 24.1 bits (53), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 22  FPHLTILLLGIGIFFTAW 39
            PHL  LLL   + F A+
Sbjct: 304 MPHLPFLLLAGLLAFLAY 321


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,106,009
Number of extensions: 342529
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 126
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)