RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18016
         (78 letters)



>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain
           {Thermus aquaticus [TaxId: 271]}
          Length = 170

 Score = 27.5 bits (61), Expect = 0.13
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 5   INYESMQRYVSPVNPAIFPHLTILLL 30
           +N E+MQ++V  +     PHLT+ +L
Sbjct: 132 LNSEAMQKHVRTLYRDFVPHLTLRML 157


>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal
          DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
          Length = 63

 Score = 23.5 bits (51), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 43 YEVTSTKLSRDLVKEL 58
          Y+VT   +SRD+ KEL
Sbjct: 33 YKVTQATVSRDI-KEL 47


>d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin II [TaxId: 622]}
          Length = 297

 Score = 22.6 bits (48), Expect = 7.2
 Identities = 6/58 (10%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 6   NYESMQRYVSPVNPAIFPHLTILLLGIGIFFTAWFFVYEVTSTKLSRDLVKELVIALV 63
           +Y ++QR  +     +        +      +++  + E +   ++RD  + ++  + 
Sbjct: 113 SYTTLQRVAALERSGMQ-------ISRHSLVSSYLALMEFSGNTMTRDASRAVLRFVT 163


>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice
          yellow mottle virus) [TaxId: 31744]}
          Length = 189

 Score = 22.6 bits (48), Expect = 7.8
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 3/43 (6%)

Query: 2  QSTINYESMQRYVSPVNPAIFPHLTILLLGIGIF-FTAWFFVY 43
          + +        Y     P   P +  L     ++  T W  VY
Sbjct: 18 KRSSTSADATTY--DCVPFNLPRVWSLARCYSMWKPTRWDVVY 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,935
Number of extensions: 9941
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.0 bits)