BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18018
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 331 bits (848), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 212/498 (42%), Positives = 255/498 (51%), Gaps = 182/498 (36%)
Query: 267 TQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
TQ++HMMQ+IEPQFQRDFISLLP+ELALYVL+FL+P+DLL+AAQTCR WR LAEDNLLWR
Sbjct: 1 TQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60
Query: 327 EKCLEAAT---LHRNKKTHVPDLF------------------------------------ 347
EKC E LH ++ + F
Sbjct: 61 EKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDH 120
Query: 348 ---GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADST 404
QF G +VSGS D +++VW A +G TL+GH ++R+NI++SG+ D T
Sbjct: 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 180
Query: 405 VKVWD--------------------------IVSGTKKLMFRI-------CL-------- 423
+KVW+ +VSG++ R+ CL
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 424 ------FDGVHVVSGS----------------------------------------LDTS 437
+DG VVSG+ LDTS
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 438 IRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497
IRVW+ E+GN HTL GHQSLTSGMEL++NILVSGNADSTVK+WDI +GQCLQTL G NK
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 498 HQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557
HQSAVTCLQFN FVITSSDDGTVKLWD+KTGEF L++
Sbjct: 361 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT-------------------- 400
Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNXXXXXXXXXXXXXWRIRASETKLVCAVGSR 617
+ S G V +W + RAS TKLVCAVGSR
Sbjct: 401 --------LESGGSGGV-VWRI------------------------RASNTKLVCAVGSR 427
Query: 618 NGTEETKLLVLDFDVDSK 635
NGTEETKLLVLDFDVD K
Sbjct: 428 NGTEETKLLVLDFDVDMK 445
Score = 211 bits (538), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 172/305 (56%), Gaps = 48/305 (15%)
Query: 3 HRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVE 62
HR ++ NWR +K PKVLKGHDDHVITCLQF G S + W A+
Sbjct: 97 HR-IDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAV-------- 147
Query: 63 INWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-------- 114
K + L GH V + Q + I+SGS D TLKVW+A TG+C+
Sbjct: 148 ------TGKCLRTLVGHTGGVWSS-QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS 200
Query: 115 -----------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYM 163
+VSGSRDATLRVW IE+G+CLHVL+GH+AAVRCVQYDG+ VVSGAYD+M
Sbjct: 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 260
Query: 164 VKIWNPDTEECLHAELQETEVELSHGYALRS---RIVSGSDDNTLKVWSATTGKCLRTLI 220
VK+W+P+TE CLH T + Y+L+ +VSGS D +++VW TG C+ TL
Sbjct: 261 VKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 221 GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF 280
GH ++ NI++SG+ D T+K W + GQ + + + +H + QF
Sbjct: 317 GHQSLTSGMELKDNILVSGNADSTVKIWD-----IKTGQCLQTLQGPN-KHQSAVTCLQF 370
Query: 281 QRDFI 285
++F+
Sbjct: 371 NKNFV 375
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 141/323 (43%), Gaps = 145/323 (44%)
Query: 49 SPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSA 108
SPWK+ ++ ++ NWR +K PKVLKGHDDHVITCLQF G+RIVSGSDDNTLKVWSA
Sbjct: 87 SPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSA 146
Query: 109 TT----------------------------------------GKCL-------------- 114
T G+C+
Sbjct: 147 VTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206
Query: 115 -----LVSGSRDATLRVWHIESGECLHVLVGHLAAVRC---------------------- 147
+VSGSRDATLRVW IE+G+CLHVL+GH+AAVRC
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 266
Query: 148 ------------------VQYDGKLVVSGAYDYMVKIWNPDTEECLHA-----------E 178
+Q+DG VVSG+ D +++W+ +T C+H E
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Query: 179 LQETEV------------ELSHGYAL-------------------RSRIVSGSDDNTLKV 207
L++ + ++ G L ++ +++ SDD T+K+
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 386
Query: 208 WSATTGKCLRTLI----GHTGGV 226
W TG+ +R L+ G +GGV
Sbjct: 387 WDLKTGEFIRNLVTLESGGSGGV 409
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 149/561 (26%), Positives = 249/561 (44%), Gaps = 108/561 (19%)
Query: 70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL------------- 114
+K+ L+ H V + FS G I S SDD T+K+W+ G+ L
Sbjct: 6 VKERNRLEAHSSSV-RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 63
Query: 115 --------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
+ S S D T+++W+ +G+ L L GH ++VR V + DG+ + S + D V
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSATTGKCLRTLIG 221
K+WN + + + V G A I S SDD T+K+W+ G+ L+TL G
Sbjct: 123 KLWNRNGQLLQTLTGHSSSV---WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 178
Query: 222 HTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279
H+ VW + G I S S D+T+K W+ GQL+ +
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQT---------------- 216
Query: 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNK 339
L ++ + F + +A ++ + + L L+ T H +
Sbjct: 217 -------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSS 264
Query: 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV 397
V F+ DG + S S D ++++W +G L TL GH S G+ +
Sbjct: 265 VNGVA----FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 398 SGNADSTVKVWD-------IVSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLR 449
S + D TVK+W+ ++G ++ + DG + S S D ++++W +G L
Sbjct: 320 SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 378
Query: 450 HTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507
TL GH S G+ + S + D TVK+W+ +GQ LQTL+G H S+V + F
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG---HSSSVWGVAF 434
Query: 508 --NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
+ + + ++SDD TVKLW+ + G+ L +S + + + +
Sbjct: 435 SPDDQTIASASDDKTVKLWN-RNGQLLQTLTG-----------HSSSVRGVAFSPDGQTI 482
Query: 566 ITSSDDGTVKLWDVKTGEFIR 586
++SDD TVKLW+ + G+ ++
Sbjct: 483 ASASDDKTVKLWN-RNGQLLQ 502
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 153/560 (27%), Positives = 241/560 (43%), Gaps = 88/560 (15%)
Query: 74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL----------------- 114
+ L GH V + FS G I S SDD T+K+W+ G+ L
Sbjct: 51 QTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 115 ----LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
+ S S D T+++W+ +G+ L L GH ++V V + DG+ + S + D VK+WN
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 169 PDTEECLHAELQETEVELSHGYALR---SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
+ + + V G A I S SDD T+K+W+ G+ L+TL GH+
Sbjct: 168 RNGQLLQTLTGHSSSV---WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 223
Query: 226 VWSSQMA--GNIIISGSTDRTLKGWS-NAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282
V + G I S S D+T+K W+ N + + + S R Q I
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 283 DFISLLPRELALYVLTFLQPEDLLRAA-----QTCRSWRFLAEDNL---LWREKCLEAAT 334
+ L R L + A QT S A D+ LW T
Sbjct: 284 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS----ASDDKTVKLWNRNGQHLQT 339
Query: 335 LHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR 392
L H ++G F DG + S S D ++++W +G L TL GH S G+
Sbjct: 340 L----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 394
Query: 393 --NNILVSGNADSTVKVWD-------IVSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWE 442
+ S + D TVK+W+ ++G ++ + D + S S D ++++W
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 443 AESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS 500
+G L TL GH S G+ + S + D TVK+W+ +GQ LQTL+G H S
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG---HSS 509
Query: 501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+V + F + + + ++SDD TVKLW+ + G+ L +S +
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-----------HSSSVWGVAF 557
Query: 559 QFNSRFVITSSDDGTVKLWD 578
+ + + ++S D TVKLW+
Sbjct: 558 SPDGQTIASASSDKTVKLWN 577
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 20/265 (7%)
Query: 324 LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 383
+W + LE R H + Q+D +++GS D+++RVW+ +G + +TL+ H
Sbjct: 157 IWDKNTLECK---RILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 213
Query: 384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL----------FDGVHVVSGS 433
+ N ++V+ + D ++ VWD+ S T + R+ + FD ++VS S
Sbjct: 214 EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 273
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS 493
D +I+VW + TL GH+ + ++ R+ ++VSG++D+T+++WDI G CL+ L
Sbjct: 274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 333
Query: 494 GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL 553
G H+ V C++F+++ +++ + DG +K+WD+ P + L + +S +
Sbjct: 334 G---HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA--LDPRAPAGTLCLRTLVEHSGRV 388
Query: 554 LCPHLQFNSRFVITSSDDGTVKLWD 578
LQF+ +++SS D T+ +WD
Sbjct: 389 F--RLQFDEFQIVSSSHDDTILIWD 411
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 132/244 (54%), Gaps = 26/244 (10%)
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTV 405
++ Q+D +VSG D +I++W+ + + L GH ++ ++++G++DSTV
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 195
Query: 406 KVWDIVSGTK-KLMFRIC------LFDGVHVVSGSLDTSIRVWEAESG---NLRHTLMGH 455
+VWD+ +G + C F+ +V+ S D SI VW+ S LR L+GH
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 456 QSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
++ + ++ + +VS + D T+KVW+ + + ++TL+G H+ + CLQ+ R V++
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACLQYRDRLVVSG 312
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVK 575
S D T++LWD++ G L + + + C ++F+++ +++ + DG +K
Sbjct: 313 SSDNTIRLWDIECGACLRVLEG-----------HEELVRC--IRFDNKRIVSGAYDGKIK 359
Query: 576 LWDV 579
+WD+
Sbjct: 360 VWDL 363
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 53/322 (16%)
Query: 195 RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERI 254
+IVSG DNT+K+W T +C R L GHTG V Q +II+GS+D T++ W
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD----- 199
Query: 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS 314
+ G++++ T I H ++ +F + ++ ++ V P D+
Sbjct: 200 VNTGEMLN----TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--------- 246
Query: 315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
TL R H + FD ++VS S D +I+VW +
Sbjct: 247 -------------------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE 287
Query: 375 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGT-------KKLMFRICLFDGV 427
TL GH+ + ++ R+ ++VSG++D+T+++WDI G + + R FD
Sbjct: 288 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Query: 428 HVVSGSLDTSIRVWE--------AESGNL-RHTLMGHQSLTSGMELRNNILVSGNADSTV 478
+VSG+ D I+VW+ A +G L TL+ H ++ +VS + D T+
Sbjct: 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTI 407
Query: 479 KVWDIVSGQCLQTLSGRNKHQS 500
+WD ++ Q R+ ++
Sbjct: 408 LIWDFLNDPAAQAEPPRSPSRT 429
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 44/338 (13%)
Query: 280 FQRDFISLLPRE----LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR---EKCLEA 332
QRDFI+ LP +A +L++L + L A C+ W + D +LW+ E+ +
Sbjct: 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65
Query: 333 ATLHRNK-----------KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-- 379
+L R K PD + + I E+ RH+L
Sbjct: 66 DSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQR 125
Query: 380 MGHQSLTSG----MELRNNILVSGNADSTVKVWDIVSGTKKLMFR------ICL-FDGVH 428
+ +S TS ++ + +VSG D+T+K+WD + K + +CL +D
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 185
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQC 488
+++GS D+++RVW+ +G + +TL+ H + N ++V+ + D ++ VWD+ S
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLI 548
+ H++AV + F+ ++++++S D T+K+W+ T EF L
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG----------- 294
Query: 549 YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
+ + + C LQ+ R V++ S D T++LWD++ G +R
Sbjct: 295 HKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLR 330
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 32/235 (13%)
Query: 40 PCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKV-LKGHDDHVITCLQFSGSRIVSGS 98
P SF R+ P + ++E NWR ++ + + CLQ+ +IVSG
Sbjct: 93 PPNSFYRALYP--KIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGL 150
Query: 99 DDNTLKVWSATTGKC-------------------LLVSGSRDATLRVWHIESGECLHVLV 139
DNT+K+W T +C ++++GS D+T+RVW + +GE L+ L+
Sbjct: 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI 210
Query: 140 GHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR------ 193
H AV ++++ ++V+ + D + +W+ + ++ V + H A+
Sbjct: 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP----TDITLRRVLVGHRAAVNVVDFDD 266
Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGW 248
IVS S D T+KVW+ +T + +RTL GH G+ Q +++SGS+D T++ W
Sbjct: 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 111/242 (45%), Gaps = 32/242 (13%)
Query: 65 WRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL---------- 114
W ++ ++L GH V+ CLQ+ I++GS D+T++VW TG+ L
Sbjct: 158 WDKNTLECKRILTGHTGSVL-CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Query: 115 ---------LVSGSRDATLRVWHIESGECL---HVLVGHLAAVRCVQYDGKLVVSGAYDY 162
+V+ S+D ++ VW + S + VLVGH AAV V +D K +VS + D
Sbjct: 217 LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276
Query: 163 MVKIWNPDTEECLHAELQETEVELSHGYA---LRSR-IVSGSDDNTLKVWSATTGKCLRT 218
+K+WN T E T G A R R +VSGS DNT+++W G CLR
Sbjct: 277 TIKVWNTST-----CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 219 LIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEP 278
L GH V + I+SG+ D +K W + C T + H ++
Sbjct: 332 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391
Query: 279 QF 280
QF
Sbjct: 392 QF 393
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 92/194 (47%), Gaps = 52/194 (26%)
Query: 74 KVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGK-------------CL------ 114
+VL GH + + F IVS S D T+KVW+ +T + CL
Sbjct: 250 RVLVGHR-AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEEC 174
+VSGS D T+R+W IE G CL VL GH VRC+++D K +VSGAYD +K+W+
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD------ 362
Query: 175 LHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN 234
L A AL R +G+ CLRTL+ H+G V+ Q
Sbjct: 363 LVA-------------ALDPRAPAGT-------------LCLRTLVEHSGRVFRLQFDEF 396
Query: 235 IIISGSTDRTLKGW 248
I+S S D T+ W
Sbjct: 397 QIVSSSHDDTILIW 410
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 30/148 (20%)
Query: 59 RSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL---- 114
R++++ W T + + L GH I CLQ+ +VSGS DNT+++W G CL
Sbjct: 276 RTIKV-WNTSTCEFVRTLNGHK-RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 333
Query: 115 ---------------LVSGSRDATLRVWHIESGE---------CLHVLVGHLAAVRCVQY 150
+VSG+ D ++VW + + CL LV H V +Q+
Sbjct: 334 GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
Query: 151 DGKLVVSGAYDYMVKIWNPDTEECLHAE 178
D +VS ++D + IW+ + AE
Sbjct: 394 DEFQIVSSSHDDTILIWDFLNDPAAQAE 421
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 112
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 233 TLDNTLKLWDYSKGKCLK-----------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 282 LVYIWNLQTKEIVQ 295
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 59 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 117
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 118 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 27 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 85
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 224
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 225 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 268
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 269 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 406 KVW 408
K+W
Sbjct: 328 KLW 330
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 120 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 294 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 114
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 235 TLDNTLKLWDYSKGKCLK-----------TYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 284 LVYIWNLQTKEIVQ 297
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 61 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 119
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 120 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 29 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 87
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 147
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 226
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 227 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 270
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 271 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329
Query: 406 KVW 408
K+W
Sbjct: 330 KLW 332
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 122 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 296 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 48/280 (17%)
Query: 5 SVEINWRTRPIKDPKVLK----GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRS 60
S E + P+K LK GH ++ ++FS P ++ SSS K + +
Sbjct: 5 SPEFQSKPTPVKPNYALKFTLAGHT-KAVSSVKFS----PNGEWLASSSADKLIKI---- 55
Query: 61 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSATTGKCL----- 114
W K K + GH + S S + VS SDD TLK+W ++GKCL
Sbjct: 56 ----WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 111
Query: 115 ----------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVV 156
+VSGS D ++R+W +++G+CL L H V V + DG L+V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Query: 157 SGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNTLKVWSATTGK 214
S +YD + +IW+ + +CL + + +S ++ + I++ + DNTLK+W + GK
Sbjct: 172 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 215 CLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
CL+T GH + S G I+SGS D + W+
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 208
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 209 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 252
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 253 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 406 KVW 408
K+W
Sbjct: 312 KLW 314
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 104 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 278 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 211 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 260 LVYIWNLQTKEIVQ 273
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 37 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 5 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 202
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 203 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 246
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 247 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 406 KVW 408
K+W
Sbjct: 306 KLW 308
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 98 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 272 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 86
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 87 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 146
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 207 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 256 LVYIWNLQTKEIVQ 269
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 33 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 91
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 92 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 151
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 211
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 1 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 59
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 119
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 198
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 199 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 242
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 243 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
Query: 406 KVW 408
K+W
Sbjct: 302 KLW 304
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 268 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 91
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 92 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 151
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 212 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 261 LVYIWNLQTKEIVQ 274
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 38 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 96
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 97 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 156
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 216
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 6 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 203
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 204 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 247
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 248 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
Query: 406 KVW 408
K+W
Sbjct: 307 KLW 309
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 99 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 273 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 43 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 101
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 102 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 11 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 208
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 209 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 252
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 253 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 406 KVW 408
K+W
Sbjct: 312 KLW 314
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 104 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 278 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 89
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 90 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 149
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 210 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 259 LVYIWNLQTKEIVQ 272
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 36 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 94
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 95 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 154
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 214
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 34/215 (15%)
Query: 67 TRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------- 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 5 STPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 114 --------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVS 157
LLVS S D TL++W + SG+CL L GH V C ++ + L+VS
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 158 GAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCL 216
G++D V+IW+ T +CL ++ V H S IVS S D ++W +G+CL
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 217 RTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
+TLI S G I++ + D TLK W
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 201
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 202 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 245
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 246 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
Query: 406 KVW 408
K+W
Sbjct: 305 KLW 307
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 97 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 271 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 211 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 260 LVYIWNLQTKEIVQ 273
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 37 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 5 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 202
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 203 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 246
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 247 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 406 KVW 408
K+W
Sbjct: 306 KLW 308
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 98 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 272 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 107
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 228 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 277 LVYIWNLQTKEIVQ 290
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 54 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 112
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 113 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 172
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 22 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 80
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 140
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 219
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 220 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 263
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 264 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
Query: 406 KVW 408
K+W
Sbjct: 323 KLW 325
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 115 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 289 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 325
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 95
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 96 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 216 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 265 LVYIWNLQTKEIVQ 278
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 42 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 100
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 101 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 160
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 220
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 10 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 207
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 208 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 251
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 252 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
Query: 406 KVW 408
K+W
Sbjct: 311 KLW 313
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 103 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 277 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 96
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 217 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 266 LVYIWNLQTKEIVQ 279
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 43 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 101
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 102 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 161
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 66 RTRPIKDPKVLK----GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC------ 113
+ P+K LK GH ++ ++FS G + S S D +K+W A GK
Sbjct: 11 KPTPVKPNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 114 ---------------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVV 156
LLVS S D TL++W + SG+CL L GH V C ++ + L+V
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 157 SGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215
SG++D V+IW+ T +CL V H S IVS S D ++W +G+C
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 216 LRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
L+TLI S G I++ + D TLK W
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 208
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 209 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 252
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 253 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 406 KVW 408
K+W
Sbjct: 312 KLW 314
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 104 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 278 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 40 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC-------------------- 113
L GH ++ ++FS G + S S D +K+W A GK
Sbjct: 22 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 114 -LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKIWNPD 170
LLVS S D TL++W + SG+CL L GH V C ++ + L+VSG++D V+IW+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 171 TEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS- 228
T +CL ++ V H S IVS S D ++W +G+CL+TLI S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 --SQMAGNIIISGSTDRTLKGW 248
G I++ + D TLK W
Sbjct: 201 VKFSPNGKYILAATLDNTLKLW 222
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 205
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 206 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 249
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 250 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 406 KVW 408
K++
Sbjct: 309 KLY 311
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 101 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KL+
Sbjct: 275 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLY 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 263 MVYIWNLQTKEIVQ 276
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 40 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G CL L H V V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 30/202 (14%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC-------------------- 113
L GH ++ ++FS G + S S D +K+W A GK
Sbjct: 22 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 114 -LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKIWNPD 170
LLVS S D TL++W + SG+CL L GH V C ++ + L+VSG++D V+IW+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 171 TEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS- 228
T CL V H S IVS S D ++W +G+CL+TLI S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 --SQMAGNIIISGSTDRTLKGW 248
G I++ + D TLK W
Sbjct: 201 VKFSPNGKYILAATLDNTLKLW 222
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 29/298 (9%)
Query: 135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIW---NPDTEECLHA-ELQETEVELSH 188
+ L GH AV V++ +G+ + S + D ++KIW + E+ + +L ++V S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLK 246
L +VS SDD TLK+W ++GKCL+TL GH+ V+ N+I+SGS D +++
Sbjct: 79 DSNL---LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 247 GWSNAERILAIGQLIDSCEPTQIRHMMQ---LIEPQFQRDFISLLPRELALYVLTFLQ-- 301
W + + + + L +P H + LI + + T +
Sbjct: 136 IW-DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 302 --PEDLLRAAQTCRSWRFLAEDNL--LW---REKCLEAATLHRNKKTHVPDLFGFQFDGV 354
P ++ + + DN LW + KCL+ T H+N+K + F G
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-GGK 253
Query: 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTVKVW 408
+VSGS D + +W ++ + L GH +++ NI+ S D T+K+W
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 101 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 275 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 40 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC-------------------- 113
L GH ++ ++FS G + S S D +K+W A GK
Sbjct: 22 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 114 -LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKIWNPD 170
LLVS S D TL++W + SG+CL L GH V C ++ + L+VSG++D V+IW+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 171 TEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS- 228
T +CL ++ V H S IVS S D ++W +G+CL+TLI S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 --SQMAGNIIISGSTDRTLKGW 248
G I++ + D TLK W
Sbjct: 201 VKFSPNGKYILAATLDNTLKLW 222
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L S S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 205
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 206 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 249
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 250 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 406 KVW 408
K++
Sbjct: 309 KLF 311
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 101 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KL+
Sbjct: 275 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLF 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + + S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D T+KLWD G+ + + C F+ +++++ S+D
Sbjct: 214 TLDNTLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 263 LVYIWNLQTKEIVQ 276
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 40 WLAASSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G+CL L H V V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DNT
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC-------------------- 113
L GH ++ ++FS G + + S D +K+W A GK
Sbjct: 22 LAGHT-KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 114 -LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKIWNPD 170
LLVS S D TL++W + SG+CL L GH V C ++ + L+VSG++D V+IW+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 171 TEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS- 228
T +CL ++ V H S IVS S D ++W +G+CL+TLI S
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 --SQMAGNIIISGSTDRTLKGW 248
G I++ + D TLK W
Sbjct: 201 VKFSPNGKYILAATLDNTLKLW 222
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 126/303 (41%), Gaps = 41/303 (13%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L + S D +++W G+ + GH + V + D L+VS + D +KIW+ +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 173 ECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231
+CL + + +S IVSGS D ++++W TGKCL+TL H+ V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 232 A--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP 289
G++I+S S D + W A + LID P F+ P
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNP--------------PVSFVKFSP 205
Query: 290 RELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349
+ T T + W + + KCL+ T H+N+K + F
Sbjct: 206 NGKYILAATL---------DNTLKLWDYS-------KGKCLKTYTGHKNEKYCIFANFSV 249
Query: 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADSTV 405
G +VSGS D + +W ++ + L GH +++ NI+ S D T+
Sbjct: 250 T-GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 406 KVW 408
K+W
Sbjct: 309 KLW 311
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 101 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD ++++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 275 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 27/254 (10%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
F +G + S S D I++W A G T+ GH+ S + + N+LVS + D T+K
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 93
Query: 407 VWDIVSGTKKLMFR-------ICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+WD+ SG + C F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Query: 458 LTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITS 515
S + + ++VS + D ++WD SGQCL+TL + + N ++++ +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDG 572
+ D +KLWD G+ + + C F+ +++++ S+D
Sbjct: 214 TLDNDLKLWDYSKGKCLKT-----------YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 573 TVKLWDVKTGEFIR 586
V +W+++T E ++
Sbjct: 263 MVYIWNLQTKEIVQ 276
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 32/230 (13%)
Query: 51 WKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRI-VSGSDDNTLKVWSAT 109
W A + + ++I W K K + GH + S S + VS SDD TLK+W +
Sbjct: 40 WLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Query: 110 TGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148
+GKCL +VSGS D ++R+W +++G CL L H V V
Sbjct: 99 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
Query: 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-GYALRSR-IVSGSDDNT 204
+ DG L+VS +YD + +IW+ + +CL + + +S ++ + I++ + DN
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 205 LKVWSATTGKCLRTLIGHTGGVWS-----SQMAGNIIISGSTDRTLKGWS 249
LK+W + GKCL+T GH + S G I+SGS D + W+
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 94/202 (46%), Gaps = 30/202 (14%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKC-------------------- 113
L GH ++ ++FS G + S S D +K+W A GK
Sbjct: 22 LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 114 -LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKIWNPD 170
LLVS S D TL++W + SG+CL L GH V C ++ + L+VSG++D V+IW+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 171 TEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS- 228
T CL ++ V H S IVS S D ++W +G+CL+TLI S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 229 --SQMAGNIIISGSTDRTLKGW 248
G I++ + D LK W
Sbjct: 201 VKFSPNGKYILAATLDNDLKLW 222
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 135/304 (44%), Gaps = 41/304 (13%)
Query: 135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIW---NPDTEECLHA-ELQETEVELSH 188
+ L GH AV V++ +G+ + S + D ++KIW + E+ + +L ++V S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLK 246
L +VS SDD TLK+W ++GKCL+TL GH+ V+ N+I+SGS D +++
Sbjct: 79 DSNL---LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 247 GWSNAERILAIGQLIDSCEPTQIRH---------------MMQLIEPQFQRDFISLLPRE 291
W + + + + L +P H + ++ + + +L+ +
Sbjct: 136 IW-DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW---REKCLEAATLHRNKKTHVPDLFG 348
P A T L D LW + KCL+ T H+N+K + F
Sbjct: 195 NPPVSFVKFSPNGKYILAAT------LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 248
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSG--NADST 404
G +VSGS D + +W ++ + L GH +++ NI+ S D T
Sbjct: 249 VT-GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 405 VKVW 408
+K+W
Sbjct: 308 IKLW 311
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 328 KCLEAATLHRNKKTHVPDLFGFQFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
KCL+ H N +F F+ +VSGS D S+R+W+ ++G TL H
Sbjct: 101 KCLKTLKGHSNY------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 386 TSGMELRNN--ILVSGNADSTVKVWDIVSG----------TKKLMFRICLFDGVHVVSGS 433
S + + ++VS + D ++WD SG + F +G ++++ +
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-----LVSGNADSTVKVWDIVSGQC 488
LD +++W+ G T GH++ + ++ +VSG+ D+ V +W++ + +
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 489 LQTLSGRNKHQSAVTCLQFNSRFVITSS---DDGTVKLW 524
+Q L G + C + +I S+ +D T+KLW
Sbjct: 275 VQKLQGHTDVVISTAC--HPTENIIASAALENDKTIKLW 311
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 49/243 (20%)
Query: 55 FMSHRSVEINWRT-RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC 113
F+ + + NW + + L+GH VITCLQF + +++G+DD ++V+ + K
Sbjct: 95 FLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKF 154
Query: 114 LL--------------------VSGSRDATLRVWHIESGECLHVLVGHLAAVRC---VQY 150
LL VSGS D T+RVW I+ G C HV GH + VRC V+Y
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 151 DG-KLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL----------------SHGYALR 193
K +V+G+ D + +W E + +E + L H ++R
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 194 SR------IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTL 245
+ +VSGS DNTL VW KCL L GHT ++S+ IS S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 246 KGW 248
+ W
Sbjct: 335 RIW 337
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 163/388 (42%), Gaps = 98/388 (25%)
Query: 275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW-RFLAEDNLLWRE------ 327
LI+ +RD I+ LP E++L + +LQ ED++ + ++W + + + LW++
Sbjct: 5 LIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64
Query: 328 ----KCLEAATLHRNKK------------THVPDLF------------------------ 347
K + L ++K + + ++F
Sbjct: 65 FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSV 124
Query: 348 --GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADST 404
QF+ +V++G+ D IRV+++ + L GH ++ ILVSG+ D T
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 405 VKVWDIVSGTKKLMFR----------ICLFDGV-HVVSGSLDTSIRVWE----------- 442
V+VWDI G +F I + + ++V+GS D ++ VW+
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 443 ------------AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ 490
E+ L GH + + NI+VSG+ D+T+ VWD+ +CL
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
LSG + T + I++S D T+++WD++ GE L
Sbjct: 305 ILSGHTDRIYS-TIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-------------G 350
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWD 578
L L+ + +F+++++ DG+++ WD
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 62/288 (21%)
Query: 9 NWRT-RPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRT 67
NW + + L+GH VITCLQF ++++ + + K + + + S+ +
Sbjct: 104 NWYNPKFVPQRTTLRGHXTSVITCLQFE------DNYVITGADDKXIRV-YDSINKKFLL 156
Query: 68 RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC-------------- 113
+ L GHD V G +VSGS D T++VW G C
Sbjct: 157 Q-------LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 114 ---------LLVSGSRDATLRVWHI-----------------------ESGECLHVLVGH 141
+V+GSRD TL VW + E+ + VL GH
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGS 200
A+VR V G +VVSG+YD + +W+ +CL+ T+ S Y R R +S S
Sbjct: 270 XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGW 248
D T+++W G+ TL GHT V +++ ++S + D +++GW
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 59/304 (19%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNA--- 251
+++G+DD ++V+ + K L L GH GGVW+ + A G I++SGSTDRT++ W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 252 -----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD---FISLLPRELAL--------Y 295
E + + +D E I++++ RD + LP+E ++ Y
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 296 VLTFLQPEDLLRAAQTCR----SWRFLA----------EDN--LLW---REKCLEAATLH 336
L F PE+ R S R ++ DN ++W + KCL + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 396
++ + + +S S DT+IR+W+ E+G L +TL GH +L + L + L
Sbjct: 310 TDRIYSTI----YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFL 365
Query: 397 VSGNADSTVKVWDIVSGTKKLMFR------ICLF---DGVHVVSGSLDTSIRVWEAESGN 447
VS AD +++ WD ++K + I F D + +VSGS + ++ SG
Sbjct: 366 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI-LVSGS-ENQFNIYNLRSGK 423
Query: 448 LRHT 451
L H
Sbjct: 424 LVHA 427
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 355 HVVSGSLDTSIRVWE-----------------------AESGNLRHTLMGHQSLTSGMEL 391
++V+GS D ++ VW+ E+ L GH + +
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 392 RNNILVSGNADSTVKVWD--------IVSG-TKKLMFRICLFDGVHVVSGSLDTSIRVWE 442
NI+VSG+ D+T+ VWD I+SG T ++ I + +S S DT+IR+W+
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Query: 443 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV 502
E+G L +TL GH +L + L + LVS AD +++ WD + + S + + SA+
Sbjct: 339 LENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAI 396
Query: 503 TCLQFNSRFVITSSDDGTVKLWDVKTGEF 531
T + +++ S++ ++++++G+
Sbjct: 397 TTFYVSDNILVSGSEN-QFNIYNLRSGKL 424
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 27/196 (13%)
Query: 69 PIKDPK---VLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLV--------- 116
P ++P VL+GH V T + G+ +VSGS DNTL VW KCL +
Sbjct: 256 PEENPYFVGVLRGHXASVRT-VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Query: 117 ------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMV 164
S S D T+R+W +E+GE + L GH A V ++ K +VS A D +
Sbjct: 315 STIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT-LIGHT 223
+ W+ + + ++ Y + +VSGS +N +++ +GK + ++
Sbjct: 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA 433
Query: 224 GGVWSSQMAGNIIISG 239
+WS G +++
Sbjct: 434 DQIWSVNFKGKTLVAA 449
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 CL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVK 479
CL F+ +V++G+ D IRV+++ + L GH ++ ILVSG+ D TV+
Sbjct: 127 CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 186
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL 535
VWDI G C G H S V CL N ++++T S D T+ +W + E S P
Sbjct: 187 VWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK-ESSVPD 242
Query: 536 MSSFILNPFYFLIYSQPLLCPH--------------LQFNSRFVITSSDDGTVKLWDV 579
Y L++ P P+ + + V++ S D T+ +WDV
Sbjct: 243 HGE---EHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
Q + R S +TCLQF +VIT +DD ++++D +F L + L Y
Sbjct: 113 QRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGH--DGGVWALKY 170
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
+ +++ S D TV++WD+K G
Sbjct: 171 AH----------GGILVSGSTDRTVRVWDIKKG 193
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 111/243 (45%), Gaps = 49/243 (20%)
Query: 55 FMSHRSVEINWRT-RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC 113
F+ + + NW + + L+GH VITCLQF + +++G+DD ++V+ + K
Sbjct: 95 FLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKF 154
Query: 114 LL--------------------VSGSRDATLRVWHIESGECLHVLVGHLAAVRC---VQY 150
LL VSGS D T+RVW I+ G C HV GH + VRC V+Y
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 151 DG-KLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL----------------SHGYALR 193
K +V+G+ D + +W E + +E + L H ++R
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 194 SR------IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTL 245
+ +VSGS DNTL VW KCL L GHT ++S+ IS S D T+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 246 KGW 248
+ W
Sbjct: 335 RIW 337
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 166/388 (42%), Gaps = 98/388 (25%)
Query: 275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW-RFLAEDNLLWRE------ 327
LI+ +RD I+ LP E++L + +LQ ED++ + ++W + + + LW++
Sbjct: 5 LIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64
Query: 328 ----KCLEAATLHRNKK------------THVPDLF------------------------ 347
K + L ++K + + ++F
Sbjct: 65 FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSV 124
Query: 348 --GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADST 404
QF+ +V++G+ D IRV+++ + L GH ++ ILVSG+ D T
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 405 VKVWDIVSGTKKLMFR----------ICLFDGV-HVVSGSLDTSIRVWE----------- 442
V+VWDI G +F I + + ++V+GS D ++ VW+
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244
Query: 443 ------------AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ 490
E+ L GH + + NI+VSG+ D+T+ VWD+ +CL
Sbjct: 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
LSG + T + I++S D T+++WD++ GE LM + +
Sbjct: 305 ILSGHTDRIYS-TIYDHERKRCISASMDTTIRIWDLENGE----LM---------YTLQG 350
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWD 578
L L+ + +F+++++ DG+++ WD
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 127/288 (44%), Gaps = 62/288 (21%)
Query: 9 NWRT-RPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRT 67
NW + + L+GH VITCLQF ++++ + + K + + + S+ +
Sbjct: 104 NWYNPKFVPQRTTLRGHMTSVITCLQFE------DNYVITGADDKMIRV-YDSINKKFLL 156
Query: 68 RPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC-------------- 113
+ L GHD V G +VSGS D T++VW G C
Sbjct: 157 Q-------LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 114 ---------LLVSGSRDATLRVWHI-----------------------ESGECLHVLVGH 141
+V+GSRD TL VW + E+ + VL GH
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY-ALRSRIVSGS 200
+A+VR V G +VVSG+YD + +W+ +CL+ T+ S Y R R +S S
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGW 248
D T+++W G+ + TL GHT V +++ ++S + D +++GW
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 59/304 (19%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNA--- 251
+++G+DD ++V+ + K L L GH GGVW+ + A G I++SGSTDRT++ W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 252 -----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD---FISLLPRELAL--------Y 295
E + + +D E I++++ RD + LP+E ++ Y
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 296 VLTFLQPEDLLRAAQTCR----SWRFLA----------EDN--LLW---REKCLEAATLH 336
L F PE+ R S R ++ DN ++W + KCL + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNIL 396
++ + + +S S+DT+IR+W+ E+G L +TL GH +L + L + L
Sbjct: 310 TDRIYSTI----YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL 365
Query: 397 VSGNADSTVKVWDIVSGTKKLMFR------ICLF---DGVHVVSGSLDTSIRVWEAESGN 447
VS AD +++ WD ++K + I F D + +VSGS + ++ SG
Sbjct: 366 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI-LVSGS-ENQFNIYNLRSGK 423
Query: 448 LRHT 451
L H
Sbjct: 424 LVHA 427
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 35/209 (16%)
Query: 355 HVVSGSLDTSIRVWE-----------------------AESGNLRHTLMGHQSLTSGMEL 391
++V+GS D ++ VW+ E+ L GH + +
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 392 RNNILVSGNADSTVKVWD--------IVSG-TKKLMFRICLFDGVHVVSGSLDTSIRVWE 442
NI+VSG+ D+T+ VWD I+SG T ++ I + +S S+DT+IR+W+
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Query: 443 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV 502
E+G L +TL GH +L + L + LVS AD +++ WD + + S + + SA+
Sbjct: 339 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAI 396
Query: 503 TCLQFNSRFVITSSDDGTVKLWDVKTGEF 531
T + +++ S++ ++++++G+
Sbjct: 397 TTFYVSDNILVSGSEN-QFNIYNLRSGKL 424
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 27/196 (13%)
Query: 69 PIKDPK---VLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLV--------- 116
P ++P VL+GH V T + G+ +VSGS DNTL VW KCL +
Sbjct: 256 PEENPYFVGVLRGHMASVRT-VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314
Query: 117 ------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMV 164
S S D T+R+W +E+GE ++ L GH A V ++ K +VS A D +
Sbjct: 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT-LIGHT 223
+ W+ + + ++ Y + +VSGS +N +++ +GK + ++
Sbjct: 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA 433
Query: 224 GGVWSSQMAGNIIISG 239
+WS G +++
Sbjct: 434 DQIWSVNFKGKTLVAA 449
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 422 CL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVK 479
CL F+ +V++G+ D IRV+++ + L GH ++ ILVSG+ D TV+
Sbjct: 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 186
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL 535
VWDI G C G H S V CL N ++++T S D T+ +W + E S P
Sbjct: 187 VWDIKKGCCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK-ESSVPD 242
Query: 536 MSSFILNPFYFLIYSQPLLCPH--------------LQFNSRFVITSSDDGTVKLWDV 579
Y L++ P P+ + + V++ S D T+ +WDV
Sbjct: 243 HGE---EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
Q + R S +TCLQF +VIT +DD ++++D +F L + L Y
Sbjct: 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKY 170
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
+ +++ S D TV++WD+K G
Sbjct: 171 AH----------GGILVSGSTDRTVRVWDIKKG 193
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 78/347 (22%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWNPDT 171
++VS S DAT++VW E+G+ L GH +V+ + +D GKL+ S + D +K+W+
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 172 EECLHA-ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW--S 228
EC+ + V IVS S D T+K+W TG C++T GH V
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
G +I S S D+T++ W ++A + E + RH+++ I + + S
Sbjct: 242 PNQDGTLIASCSNDQTVRVW-----VVATKEC--KAELREHRHVVECISWAPESSYSS-- 292
Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
+ AT KK+ P F
Sbjct: 293 -----------------------------------------ISEATGSETKKSGKPGPF- 310
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--NILVSGNADSTVK 406
++SGS D +I++W+ +G TL+GH + G+ + ++S D T++
Sbjct: 311 -------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 407 VWDIVSGTKKLMFRICLFD-----------GVHVVSGSLDTSIRVWE 442
VWD K+ M + + +VV+GS+D +++VWE
Sbjct: 364 VWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 99/223 (44%), Gaps = 49/223 (21%)
Query: 74 KVLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCL------------------ 114
+ LKGH D V SG + S S D T+K+W +C+
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 115 ---LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ--YDGKLVVSGAYDYMVKIWNP 169
+VS SRD T+++W +++G C+ GH VR V+ DG L+ S + D V++W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 170 DTEECLHAELQE----------------------TEVELSHGYALRSRIVSGSDDNTLKV 207
T+EC AEL+E T E ++SGS D T+K+
Sbjct: 264 ATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 208 WSATTGKCLRTLIGHTGGVWSS--QMAGNIIISGSTDRTLKGW 248
W +TG CL TL+GH V G I+S + D+TL+ W
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 49/260 (18%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDI--- 410
+VS S D +I+VW+ E+G+ TL GH + ++ +L S +AD T+K+WD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 411 -----VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464
+ G + + + +G H+VS S D +I++WE ++G T GH+ +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 465 RNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR------------ 510
+ ++ S + D TV+VW + + +C L +H+ V C+ +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGS 299
Query: 511 ----------FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF 560
F+++ S D T+K+WDV TG LM+ + + +
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT--------LVGHDNWVRGVLFHS 348
Query: 561 NSRFVITSSDDGTVKLWDVK 580
+F+++ +DD T+++WD K
Sbjct: 349 GGKFILSCADDKTLRVWDYK 368
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 129/289 (44%), Gaps = 55/289 (19%)
Query: 331 EAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388
E R K H + FD G + S S D +I++W+ + T+ GH S
Sbjct: 138 ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS 197
Query: 389 MELRNN--ILVSGNADSTVKVWDIVSGTKKLMF-------RICLF--DGVHVVSGSLDTS 437
+ + N +VS + D T+K+W++ +G F R+ DG + S S D +
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 438 IRVWEAESGNLRHTLMGHQ-----------------SLTSGMELRNN-----ILVSGNAD 475
+RVW + + L H+ S +G E + + L+SG+ D
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS--RFVITSSDDGTVKLWDVKTGEFST 533
T+K+WD+ +G CL TL G H + V + F+S +F+++ +DD T+++WD K
Sbjct: 318 KTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 534 PLMSSFILNPFYFLIYSQPLLCPHLQFN--SRFVITSSDDGTVKLWDVK 580
LN + S L F+ + +V+T S D TVK+W+ +
Sbjct: 375 ------TLNAHEHFVTS-------LDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 47/222 (21%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ + GHD +V + + +G IVS S D T+K+W TG C
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--------------------- 150
L+ S S D T+RVW + + EC L H V C+ +
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 151 -DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVW 208
G ++SG+ D +K+W+ T CL + + V ++ I+S +DD TL+VW
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 209 SATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGW 248
+C++TL H V S +++GS D+T+K W
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSG 486
+VS S D +I+VW+ E+G+ TL GH + ++ +L S +AD T+K+WD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
+C++T+ G + + S+V+ + N ++++S D T+K+W+V+TG + + F
Sbjct: 183 ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTG---------YCVKTFTG 232
Query: 547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
++ P+ + + + S+D TV++W V T E
Sbjct: 233 HREWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKE 267
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 41/238 (17%)
Query: 376 RHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGTKKLMFR-------ICLFD- 425
++ L GH+S + + +++VS + D+T+KVWD +G + + FD
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 426 -GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWD 482
G + S S D +I++W+ + T+ GH S + + N +VS + D T+K+W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 483 IVSGQCLQTLSGRNKHQSAVTCLQFNS--RFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
+ +G C++T +G H+ V ++ N + + S+D TV++W V T E L
Sbjct: 221 VQTGYCVKTFTG---HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE--- 274
Query: 541 LNPFYFLIYSQPLLCPHLQFNS----------------RFVITSSDDGTVKLWDVKTG 582
+ + P ++S F+++ S D T+K+WDV TG
Sbjct: 275 ----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 131/333 (39%), Gaps = 89/333 (26%)
Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW--SSQMAGNIIISGSTDRTLKGWS-- 249
S +VS S+D T+KVW TG RTL GHT V S +G ++ S S D T+K W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 250 ---------------NAERILAIGQLIDSCEPTQI------------------RHMMQLI 276
++ I+ G I S + R ++++
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 277 EPQFQRDFISLLPRE--LALYVLTFLQPEDLLRAAQ---TCRSWRFLAEDNLLWREKCLE 331
P I+ + + ++V+ + + LR + C SW E + +
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW--APESSY----SSIS 294
Query: 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 391
AT KK+ P F ++SGS D +I++W+ +G TL+GH + G+
Sbjct: 295 EATGSETKKSGKPGPF--------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV-- 344
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT 451
+ SG G ++S + D ++RVW+ ++ T
Sbjct: 345 ---LFHSG--------------------------GKFILSCADDKTLRVWDYKNKRCMKT 375
Query: 452 LMGHQSLTSGMELRNN--ILVSGNADSTVKVWD 482
L H+ + ++ +V+G+ D TVKVW+
Sbjct: 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 449 RHTLMGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
++ L GH+S + + +++VS + D+T+KVWD +G +TL G H +V +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG---HTDSVQDIS 157
Query: 507 FN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564
F+ + + + S D T+KLWD + E + + + + N
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-----------HDHNVSSVSIMPNGDH 206
Query: 565 VITSSDDGTVKLWDVKTGEFIR 586
++++S D T+K+W+V+TG ++
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVK 228
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 130/595 (21%), Positives = 236/595 (39%), Gaps = 122/595 (20%)
Query: 75 VLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
V++ H D V C G RI S D TL+V+ A E+GE
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------------------ETGE 648
Query: 134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
L + H V C + D + + + D VKIW+ T + +H + +E +
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 192 LRSR---IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLK 246
+S + +GS+D LK+W +C T+ GHT V + + + ++ S S D TL+
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 247 GW----SNAERILAIGQLIDSCE--PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300
W +N + + + + S E P + +++ D I + + L L +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL--LFDI 826
Query: 301 QPEDLLRAAQT-----CRSWRFLAEDNLL---WREKCLEAATLHRNKKT-----HVPDLF 347
LL T + F D+L + C+E + K H+ +
Sbjct: 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 348 GFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS------- 398
G F DG ++ S D +IRVWE + ++ Q + + ++++
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946
Query: 399 --------------------------------GNADSTVKVWDIVS--------GTKKLM 418
G+ D +K+ ++ + G KK +
Sbjct: 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 419 FRICL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADS 476
I DG ++S S D+ I+VW ++G+ L HQ L +++ L+S + D
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1065
Query: 477 TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFST 533
TVKVW++++G+ + + HQ V +S +F TS+D T K+W
Sbjct: 1066 TVKVWNVITGRIERDFTC---HQGTVLSCAISSDATKFSSTSADK-TAKIW--------- 1112
Query: 534 PLMSSFILNPFYFLI-YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587
S +L+P + L ++ + C + + T D+G +++W+V G+ + +
Sbjct: 1113 ---SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 133/606 (21%), Positives = 242/606 (39%), Gaps = 129/606 (21%)
Query: 21 LKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHD 80
+K H+D V+ C FS +S+I + S + + V+I W + K++ +D
Sbjct: 653 IKAHEDEVLCC-AFSSD----DSYIATCS-------ADKKVKI-WDSAT---GKLVHTYD 696
Query: 81 DHV--ITCLQFSGSR----IVSGSDDNTLKVWSATTGKC--------------------- 113
+H + C F+ + +GS+D LK+W +C
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756
Query: 114 LLVSGSRDATLRVWHIESG---ECLHVLVGHLAA----------VRCVQY--DGKLVVSG 158
LL S S D TLR+W + S + ++V L++ V+C + DG ++
Sbjct: 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816
Query: 159 AYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD--------DNTLKVWSA 210
A + V +++ T L E+ H ++ S D +++W+
Sbjct: 817 AKN-KVLLFDIHTSGLL------AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 211 TTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268
+ + GH V + G+ ++ S D+T++ W + C+ +
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----------VCKNSA 919
Query: 269 IRHMMQLIEPQFQRDFISLLP----RELALYVLTFLQPEDLLRAAQTC-------RSWRF 317
I + Q I+ FQ + +L R L L Q + L A +C F
Sbjct: 920 IV-LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978
Query: 318 LAEDNL-----LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES 372
ED L + + H+ H+ F DG ++S S D+ I+VW ++
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ----FTADGKTLISSSEDSVIQVWNWQT 1034
Query: 373 GNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGTKKLMFRI-------CLF 424
G+ L HQ L +++ L+S + D TVKVW++++G + F C
Sbjct: 1035 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 425 --DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT--SGMELRNNILVSGNADSTVKV 480
D S S D + ++W + + H L GH S L +L +G+ + +++
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153
Query: 481 WDIVSGQCLQTLS------GRNKHQSAVT--CLQFNSRFVITSSDDGTVKLWDVKTGEFS 532
W++ GQ L + + G H VT C +S+ ++++ G +K W+V TG+ S
Sbjct: 1154 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSS 1211
Query: 533 TPLMSS 538
++
Sbjct: 1212 QTFYTN 1217
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 130/595 (21%), Positives = 236/595 (39%), Gaps = 122/595 (20%)
Query: 75 VLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
V++ H D V C G RI S D TL+V+ A E+GE
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------------------ETGE 655
Query: 134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
L + H V C + D + + + D VKIW+ T + +H + +E +
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 192 LRSR---IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLK 246
+S + +GS+D LK+W +C T+ GHT V + + + ++ S S D TL+
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 247 GW----SNAERILAIGQLIDSCE--PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300
W +N + + + + S E P + +++ D I + + L L +
Sbjct: 776 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL--LFDI 833
Query: 301 QPEDLLRAAQT-----CRSWRFLAEDNLL---WREKCLEAATLHRNKKT-----HVPDLF 347
LL T + F D+L + C+E + K H+ +
Sbjct: 834 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 348 GFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVS------- 398
G F DG ++ S D +IRVWE + ++ Q + + ++++
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 953
Query: 399 --------------------------------GNADSTVKVWDIVS--------GTKKLM 418
G+ D +K+ ++ + G KK +
Sbjct: 954 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 419 FRICL-FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADS 476
I DG ++S S D+ I+VW ++G+ L HQ L +++ L+S + D
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1072
Query: 477 TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFST 533
TVKVW++++G+ + + HQ V +S +F TS+D T K+W
Sbjct: 1073 TVKVWNVITGRIERDFTC---HQGTVLSCAISSDATKFSSTSADK-TAKIW--------- 1119
Query: 534 PLMSSFILNPFYFLI-YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587
S +L+P + L ++ + C + + T D+G +++W+V G+ + +
Sbjct: 1120 ---SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 133/606 (21%), Positives = 242/606 (39%), Gaps = 129/606 (21%)
Query: 21 LKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHD 80
+K H+D V+ C FS +S+I + S + + V+I W + K++ +D
Sbjct: 660 IKAHEDEVLCC-AFSSD----DSYIATCS-------ADKKVKI-WDSAT---GKLVHTYD 703
Query: 81 DHV--ITCLQFSGSR----IVSGSDDNTLKVWSATTGKC--------------------- 113
+H + C F+ + +GS+D LK+W +C
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 763
Query: 114 LLVSGSRDATLRVWHIESG---ECLHVLVGHLAA----------VRCVQY--DGKLVVSG 158
LL S S D TLR+W + S + ++V L++ V+C + DG ++
Sbjct: 764 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 823
Query: 159 AYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD--------DNTLKVWSA 210
A + V +++ T L E+ H ++ S D +++W+
Sbjct: 824 AKN-KVLLFDIHTSGLL------AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 211 TTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268
+ + GH V + G+ ++ S D+T++ W + C+ +
Sbjct: 877 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK----------VCKNSA 926
Query: 269 IRHMMQLIEPQFQRDFISLLP----RELALYVLTFLQPEDLLRAAQTC-------RSWRF 317
I + Q I+ FQ + +L R L L Q + L A +C F
Sbjct: 927 IV-LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 985
Query: 318 LAEDNL-----LWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES 372
ED L + + H+ H+ F DG ++S S D+ I+VW ++
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ----FTADGKTLISSSEDSVIQVWNWQT 1041
Query: 373 GNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGTKKLMFRI-------CLF 424
G+ L HQ L +++ L+S + D TVKVW++++G + F C
Sbjct: 1042 GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1100
Query: 425 --DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT--SGMELRNNILVSGNADSTVKV 480
D S S D + ++W + + H L GH S L +L +G+ + +++
Sbjct: 1101 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1160
Query: 481 WDIVSGQCLQTLS------GRNKHQSAVT--CLQFNSRFVITSSDDGTVKLWDVKTGEFS 532
W++ GQ L + + G H VT C +S+ ++++ G +K W+V TG+ S
Sbjct: 1161 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSS 1218
Query: 533 TPLMSS 538
++
Sbjct: 1219 QTFYTN 1224
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 36/220 (16%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVK 406
F DG + +G+ D IR+W+ E+ + L GH+ ++ + LVSG+ D TV+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 407 VWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL----- 452
+WD+ +G L I DG ++ +GSLD ++RVW++E+G L L
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 453 --MGHQ-SLTSGMELRN-NILVSGNADSTVKVWDIV------------SGQCLQTLSGRN 496
GH+ S+ S + R+ +VSG+ D +VK+W++ SG C T G
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLM 536
+V Q N ++++ S D V WD K+G PL+
Sbjct: 311 DFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSG---NPLL 346
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 75 VLKGHDDHVITCLQF-SGSRIVSGSDDNTLKVWSATTGKCLL------------------ 115
+L+GH+ + + F SG ++VSGS D T+++W TG+C L
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 116 ---VSGSRDATLRVWHIESGECLHVL-------VGHLAAVRCVQY--DGKLVVSGAYDYM 163
+GS D +RVW E+G + L GH +V V + DG+ VVSG+ D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 164 VKIWN------------PDTEECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSA 210
VK+WN P++ C + + LS I+SGS D + W
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 211 TTGKCLRTLIGHTGGVWSSQMAG--------NIIISGSTDRTLKGW 248
+G L L GH V S +A N+ +GS D + W
Sbjct: 340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 38/278 (13%)
Query: 147 CVQYDGKLVVSGAYDYMVKIWNPDTEECLHA-ELQETEVELSHGYALRSRIVSGSDDNTL 205
C DGK + +GA D +++IW+ + + + + E ++ + ++VSGS D T+
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 206 KVWSATTGKCLRTLIGHTG--GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDS 263
++W TG+C TL G V S G I +GS DR ++ W + L + +DS
Sbjct: 190 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV--ERLDS 247
Query: 264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYV-LTFLQPEDLLRAAQTCRSW----RFL 318
+ H + F RD S++ L V L LQ + ++T S ++
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 319 AEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378
+ + L AT ++ +++SGS D + W+ +SGN
Sbjct: 308 GHKDFV-----LSVATTQNDE---------------YILSGSKDRGVLFWDKKSGNPLLM 347
Query: 379 LMGHQSLTSGMELRN--------NILVSGNADSTVKVW 408
L GH++ + + N N+ +G+ D ++W
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
L +G+ D +R+W IE+ + + +L GH + + Y G +VSG+ D V+IW+ T
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 172 EEC---LHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL-------IG 221
+C L E T V +S G I +GS D ++VW + TG + L G
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 222 HTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
H V+S G ++SGS DR++K W+
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 412 SGTKKLMFRICLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN 467
S + L R F DG + +G+ D IR+W+ E+ + L GH+ ++ +
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK 527
LVSG+ D TV++WD+ +GQC TLS + + V + +++ S D V++WD +
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 528 TGEFSTPLMS-----SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
TG L S + + Y +++++ + + V++ S D +VKLW+++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTR---------DGQSVVSGSLDRSVKLWNLQNA 288
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 100/209 (47%), Gaps = 24/209 (11%)
Query: 395 ILVSGNADSTVKVWDI--------VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAES 445
L +G D +++WDI + G ++ ++ + F G +VSGS D ++R+W+ +
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 446 GNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNK----HQ 499
G TL +T+ + + +G+ D V+VWD +G ++ L N+ H+
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTG----EFSTPLMSSFILNPFYFLIYSQPL 553
+V + F + + V++ S D +VKLW+++ + TP + + ++ + +
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT---YIGHKDFV 313
Query: 554 LCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
L N ++++ S D V WD K+G
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 342 HVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILV 397
H D++ + G +VSGS D ++R+W+ +G TL +T+ + +
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 398 SGNADSTVKVWDIVSG---------------TKKLMFRICLF-DGVHVVSGSLDTSIRVW 441
+G+ D V+VWD +G K ++ + DG VVSGSLD S+++W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 442 EAESGNLRH------------TLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGQ 487
++ N + T +GH+ L+ + ++SG+ D V WD SG
Sbjct: 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 488 CLQTLSGRNKHQSAVTCLQFNS-----RFVITSSDDGTVKLWDVK 527
L L G +V +S T S D ++W K
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 504 CLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563
C + +F+ T ++D +++WD++ + IL IYS +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDYFP-----SGD 178
Query: 564 FVITSSDDGTVKLWDVKTGE 583
+++ S D TV++WD++TG+
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQ 198
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 133/582 (22%), Positives = 239/582 (41%), Gaps = 100/582 (17%)
Query: 75 VLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
V++ H D V C G RI S D TL+V+ A E+GE
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKA---------------------ETGE 654
Query: 134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSH-- 188
L + H V C + D + + + + D VKIWN T E +H + +E V H
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFT 714
Query: 189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLK 246
+ + +GS D LK+W +C T+ GHT V + + + ++ S S D TLK
Sbjct: 715 NSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLK 774
Query: 247 GW----SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQP 302
W +N + + + Q + E Q + + + D ++ L +
Sbjct: 775 LWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHT 834
Query: 303 EDLLRAAQ-----TCRSWRFLAEDNL---LWREKCLEA-ATLHRNK----KTHVPDLFGF 349
LL T + F +++L + C+E T R+K + H+ + G
Sbjct: 835 SGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGV 894
Query: 350 QF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKV 407
F DG ++ S D +IR+WE + +M Q + + N ++V A ++
Sbjct: 895 MFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQ-ENEVMVL--AVDHIRR 951
Query: 408 WDIVSG--------TKKLMFRICLFDGVHVVS-GSLDTSIRVWEAESGNLRHTLMGHQSL 458
+++G T+ + CL + ++ G + +I + E + + + H+
Sbjct: 952 LQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKT 1011
Query: 459 TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT 514
++ + L+S + D+ ++VW+ +C+ L G HQ V + NSR +++
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRG---HQETVKDFRLLKNSR-LLS 1066
Query: 515 SSDDGTVKLWDVKTG-----------------------EFS------TPLMSSF-ILNPF 544
S DGTVK+W++ TG +FS T + SF +L P
Sbjct: 1067 WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPL 1126
Query: 545 YFLI-YSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
+ L ++ + C +S + T D+G +++W+V GE +
Sbjct: 1127 HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 20/208 (9%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKV 407
F D ++S S D I+VW + L GHQ L +N+ L+S + D TVKV
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTVKV 1075
Query: 408 WDIVSGTKKLMFRIC----------LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
W+I++G K+ F +C D S S D + ++W + H L GH
Sbjct: 1076 WNIITGNKEKDF-VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 458 LT--SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS-----GRNKHQSAVTCLQFNSR 510
S + + +L +G+ + +++W++ +G+ L + G H VT L F+
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPD 1194
Query: 511 FVITSSDDGTVKLWDVKTGEFSTPLMSS 538
+ S G +K W+V TGE S ++
Sbjct: 1195 GKMLISAGGYIKWWNVVTGESSQTFYTN 1222
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 32/173 (18%)
Query: 45 IRSSSPWKALFMSHRSVEI---NWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDN 101
I+ ++ K L S EI NW+ + L+GH + V SR++S S D
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQ---LDKCIFLRGHQETVKDFRLLKNSRLLSWSFDG 1071
Query: 102 TLKVWSATTGK---------------------CLLVSGSRDATLRVWHIESGECLHVLVG 140
T+KVW+ TG S S D T ++W + LH L G
Sbjct: 1072 TVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG 1131
Query: 141 HLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLH--AELQETEVELSHG 189
H VRC + D L+ +G + ++IWN E LH A L E E +HG
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSE-EGAATHG 1183
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 24/201 (11%)
Query: 78 GHDDHVITCLQFSGSRIVSGSDDNTLKVW--SATTGKCLLVSGSRDATLRVWHIESGECL 135
G ++ I L+ +RI + VW T + L+S S DA ++VW+ + +C+
Sbjct: 985 GDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI 1044
Query: 136 HVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR- 193
L GH V+ + ++S ++D VK+WN T +E + G L
Sbjct: 1045 -FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGN------KEKDFVCHQGTVLSC 1097
Query: 194 ------SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTL 245
++ S S D T K+WS L L GH G V S + ++ +G + +
Sbjct: 1098 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI 1157
Query: 246 KGWSNAERILAIGQLIDSCEP 266
+ W+ ++ G+L+ C P
Sbjct: 1158 RIWN-----VSNGELLHLCAP 1173
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 482
+G VS S D S+R+W ++G ++ +GH L+ N +VSG D+ ++VW+
Sbjct: 78 NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Query: 483 IVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS 538
V G+C+ TLS R H V+C++F ++ +++ D VK+WD+ TG T L
Sbjct: 138 -VKGECMHTLS-RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG- 194
Query: 539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
++ + + + +S DG +LWD+ GE +
Sbjct: 195 ----------HTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 356 VVSGSLDTSIRVW---------EAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADST 404
VVS S D ++ W E G L GH + S + L NN VS + D +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 405 VKVWDIVSG---------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-- 453
+++W++ +G TK ++ D +VSG D ++RVW + G HTL
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRG 149
Query: 454 GHQSLTSGME----LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS 509
H S + L ++VSG D+ VKVWD+ +G+ + L G + ++VT + +
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT-VSPDG 208
Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
+S DG +LWD+ GE + + + +N F
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 41/264 (15%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
VS S D +LR+W++++G+C + +GH V V + D + +VSG D +++WN
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Query: 172 EECLHAELQETEVELSHGYALRSR-----IVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226
E C+H + + IVSG DN +KVW TG+ + L GHT V
Sbjct: 141 E-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYV 199
Query: 227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS 286
S ++ + G L S + + + L + + + +
Sbjct: 200 TSVTVSPD-----------------------GSLCASSDKDGVARLWDLTKGEALSEMAA 236
Query: 287 LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDL 346
P + P A T + R +N ++ +E A H+ K VP+
Sbjct: 237 GAPINQICF-----SPNRYWMCAATEKGIRIFDLEN---KDIIVELAPEHQGSKKIVPEC 288
Query: 347 --FGFQFDGVHVVSGSLDTSIRVW 368
+ DG + SG D IRVW
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVW 312
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 409
+G VS S D S+R+W ++G ++ +GH L+ N +VSG D+ ++VW+
Sbjct: 78 NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Query: 410 IVSGTKKLMFR-------ICL-----FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+ + R C+ D +VSG D ++VW+ +G L L GH +
Sbjct: 138 VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTN 197
Query: 458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTL-SGRNKHQSAVTCLQFNSRFVIT 514
+ + + ++ S + D ++WD+ G+ L + +G +Q C N ++
Sbjct: 198 YVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQ---ICFSPNRYWMCA 254
Query: 515 SSDDGTVKLWDVKTGEF 531
+++ G ++++D++ +
Sbjct: 255 ATEKG-IRIFDLENKDI 270
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 30/173 (17%)
Query: 76 LKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKC--------------------- 113
L+GH V L +G+ VS S D++L++W+ G+C
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 114 LLVSGSRDATLRVWHIESGECLHVLV--GHLAAVRCVQY----DGKLVVSGAYDYMVKIW 167
+VSG RD LRVW+++ GEC+H L H V CV++ D ++VSG +D +VK+W
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 168 NPDTEECLHAELQETEVELSHGYALRSRIVSGSD-DNTLKVWSATTGKCLRTL 219
+ T + T S + + + SD D ++W T G+ L +
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 429 VVSGSLDTSIRVW---------EAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADST 477
VVS S D ++ W E G L GH + S + L NN VS + D +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMS 537
+++W++ +GQC G K +V ++R +++ D +++W+VK GE L
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVA-FSPDNRQIVSGGRDNALRVWNVK-GECMHTLSR 148
Query: 538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585
+ + +S L P +++ D VK+WD+ TG +
Sbjct: 149 GAHTDWVSCVRFSPSLDAP-------VIVSGGWDNLVKVWDLATGRLV 189
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 123/323 (38%), Gaps = 70/323 (21%)
Query: 194 SRIVSGSDDNTLKVWSA---------TTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTD 242
+++VS S D TL W + G R L GH+ V ++ GN +S S D
Sbjct: 29 TKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWD 88
Query: 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLP--RELALYVLTFL 300
+L+ W+ L GQ C+ + H ++ F D ++ R+ AL
Sbjct: 89 HSLRLWN-----LQNGQ----CQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNAL------ 133
Query: 301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ--FDGVHVVS 358
R W E C+ TL R T F D +VS
Sbjct: 134 ------------RVWNVKGE--------CMH--TLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG--- 413
G D ++VW+ +G L L GH + + + + ++ S + D ++WD+ G
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Query: 414 ----TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQS--------LTS 460
+ +IC + + + + IR+++ E+ ++ L HQ ++
Sbjct: 232 SEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSI 291
Query: 461 GMELRNNILVSGNADSTVKVWDI 483
+ L SG D+ ++VW +
Sbjct: 292 AWSADGSTLYSGYTDNVIRVWGV 314
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 33/161 (20%)
Query: 84 ITCLQFSGSR----IVSGSDDNTLKVWSATTGK---------------------CLLVSG 118
++C++FS S IVSG DN +KVW TG+ L S
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 119 SRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEEC---L 175
+D R+W + GE L + + + + A + ++I++ + ++ L
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVEL 274
Query: 176 HAELQETEVELSHGYALR-----SRIVSGSDDNTLKVWSAT 211
E Q ++ + ++ S + SG DN ++VW +
Sbjct: 275 APEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94 IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
I+ GSDD ++V++ TG K ++SGS D T+++W+ E+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
L GH V CV ++ K SG D VK+W+ T QE V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
Y L + +++ SDD T+K+W T C+ TL GH V + IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
TLK W+++ E+ L +G C T I F F L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 74 KVLKGHDDHVITCLQFSG---SRIVSGSDDNTLKVWS---------ATTG---------- 111
+ +GH+ H + C+ F+ S SG D T+KVWS TTG
Sbjct: 134 QTFEGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 112 -----KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMV 164
K +++ S D T+++W ++ C+ L GH++ V + L ++SG+ D +
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 165 KIWNPDT---EECLHAELQETEVELSHGYALRSRIVSGSDD 202
KIWN T E+ L+ L+ + +H ++ I SG D+
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFD-GVHVVSGSLDTSIRVWE 442
R N ++ G+ D ++V++ +G K + F I + +V+SGS D ++++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
E+ L T GH+ + + SG D TVKVW + GQ +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
+ V + + + ++IT+SDD T+K+WD +T L F + P+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
+I+ S+DGT+K+W+ T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 355 HVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDI 410
+V+SGS D ++++W E+ L T GH+ + + SG D TVKVW +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 411 VSGTKKLMF------------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
T L D ++++ S D +I++W+ ++ + TL GH S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 459 TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS 493
S I++SG+ D T+K+W+ + + +TL+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 155 VVSGAYDYMVKIWNPDTE-ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213
V++ Y V++WN +T+ E ++ ET V A ++ I+ GSDD ++V++ TG
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 KCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
+ + H + S + ++SGS D T+K W N E A+ Q + E H
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHE-----H 141
Query: 272 MMQLI--EPQFQRDFIS-LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
+ + P+ F S L R + ++ L P L Q
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------ 183
Query: 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388
+ + D + D ++++ S D +I++W+ ++ + TL GH S S
Sbjct: 184 ---------ERGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 389 MELRNN--ILVSGNADSTVKVWD 409
I++SG+ D T+K+W+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94 IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
I+ GSDD ++V++ TG K ++SGS D T+++W+ E+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
L GH V CV ++ K SG D VK+W+ T QE V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
Y L + +++ SDD T+K+W T C+ TL GH V + IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
TLK W+++ E+ L +G C T I F F L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 74 KVLKGHDDHVITCLQFSG---SRIVSGSDDNTLKVWS---------ATTG---------- 111
+ +GH+ H + C+ F+ S SG D T+KVWS TTG
Sbjct: 134 QTFEGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 112 -----KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMV 164
K +++ S D T+++W ++ C+ L GH++ V + L ++SG+ D +
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 165 KIWNPDT---EECLHAELQETEVELSHGYALRSRIVSGSDD 202
KIWN T E+ L+ L+ + +H ++ I SG D+
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR--------ICLFD-GVHVVSGSLDTSIRVWE 442
R N ++ G+ D ++V++ +G K + F I + +V+SGS D ++++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
E+ L T GH+ + + SG D TVKVW + GQ +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
+ V + + + ++IT+SDD T+K+WD +T L F + P+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
+I+ S+DGT+K+W+ T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 355 HVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDI 410
+V+SGS D ++++W E+ L T GH+ + + SG D TVKVW +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 411 VSGTKKLMF------------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
T L D ++++ S D +I++W+ ++ + TL GH S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 459 TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS 493
S I++SG+ D T+K+W+ + + +TL+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 155 VVSGAYDYMVKIWNPDTE-ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213
V++ Y V++WN +T+ E ++ ET V A ++ I+ GSDD ++V++ TG
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 KCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
+ + H + S + ++SGS D T+K W N E A+ Q + E H
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHE-----H 141
Query: 272 MMQLI--EPQFQRDFIS-LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
+ + P+ F S L R + ++ L P L Q
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------ 183
Query: 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388
+ + D + D ++++ S D +I++W+ ++ + TL GH S S
Sbjct: 184 ---------ERGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 389 MELRNN--ILVSGNADSTVKVWD 409
I++SG+ D T+K+W+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94 IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
I+ GSDD ++V++ TG K ++SGS D T+++W+ E+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
L GH V CV ++ K SG D VK+W+ T QE V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
Y L + +++ SDD T+K+W T C+ TL GH V + IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
TLK W+++ E+ L +G C T I F F L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR----ICLFDGVH-----VVSGSLDTSIRVWE 442
R N ++ G+ D ++V++ +G K + F VH V+SGS D ++++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
E+ L T GH+ + + SG D TVKVW + GQ +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
+ V + + + ++IT+SDD T+K+WD +T L F + P+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI- 242
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKT 581
+I+ S+DGT+K+W+ T
Sbjct: 243 ----------IISGSEDGTLKIWNSST 259
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 74 KVLKGHDDHVITCLQFSG---SRIVSGSDDNTLKVWS---------ATTG---------- 111
+ +GH+ H + C+ F+ S SG D T+KVWS TTG
Sbjct: 134 QTFEGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 112 -----KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMV 164
K +++ S D T+++W ++ C+ L GH++ V + L ++SG+ D +
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 165 KIWNPDT---EECLHAELQETEVELSHGYALRSRIVSGSDD 202
KIWN T E+ L+ L+ + +H ++ I SG D+
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 355 HVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDI 410
+V+SGS D ++++W E+ L T GH+ + + SG D TVKVW +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 411 VSGTKKLMF------------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
T L D ++++ S D +I++W+ ++ + TL GH S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 459 TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS 493
S I++SG+ D T+K+W+ + + +TL+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 155 VVSGAYDYMVKIWNPDTE-ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213
V++ Y V++WN +T+ E ++ ET V A ++ I+ GSDD ++V++ TG
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 KCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
+ + H + S + ++SGS D T+K W N E A+ Q + E H
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHE-----H 141
Query: 272 MMQLI--EPQFQRDFIS-LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
+ + P+ F S L R + ++ L P L Q
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------ 183
Query: 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388
+ + D + D ++++ S D +I++W+ ++ + TL GH S S
Sbjct: 184 ---------ERGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 389 MELRNN--ILVSGNADSTVKVWD 409
I++SG+ D T+K+W+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 97/229 (42%), Gaps = 35/229 (15%)
Query: 94 IVSGSDDNTLKVWSATTG---------------------KCLLVSGSRDATLRVWHIESG 132
I+ GSDD ++V++ TG K ++SGS D T+++W+ E+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 133 ECL-HVLVGHLAAVRCVQYDGK---LVVSGAYDYMVKIWN--PDTEECLHAELQETEVEL 186
L GH V CV ++ K SG D VK+W+ T QE V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 187 SHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTD 242
Y L + +++ SDD T+K+W T C+ TL GH V + IIISGS D
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 243 RTLKGWSNA----ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287
TLK W+++ E+ L +G C T I F F L
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFR----ICLFDGVH-----VVSGSLDTSIRVWE 442
R N ++ G+ D ++V++ +G K + F VH V+SGS D ++++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 443 AESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
E+ L T GH+ + + SG D TVKVW + GQ +
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQ 183
Query: 499 QSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPL---MSSFILNPFYFLIYSQ 551
+ V + + + ++IT+SDD T+K+WD +T L MS+ F+
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH------ 237
Query: 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
P L +I+ S+DGT+K+W+ T
Sbjct: 238 PTLP--------IIISGSEDGTLKIWNSST 259
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 33/161 (20%)
Query: 74 KVLKGHDDHVITCLQFSG---SRIVSGSDDNTLKVWS---------ATTG---------- 111
+ +GH+ H + C+ F+ S SG D T+KVWS TTG
Sbjct: 134 QTFEGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 112 -----KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMV 164
K +++ S D T+++W ++ C+ L GH++ V + L ++SG+ D +
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 165 KIWNPDT---EECLHAELQETEVELSHGYALRSRIVSGSDD 202
KIWN T E+ L+ L+ + +H ++ I SG D+
Sbjct: 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 355 HVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDI 410
+V+SGS D ++++W E+ L T GH+ + + SG D TVKVW +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 411 VSGTKKLMF------------RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
T L D ++++ S D +I++W+ ++ + TL GH S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 459 TSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLS 493
S I++SG+ D T+K+W+ + + +TL+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 155 VVSGAYDYMVKIWNPDTE-ECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213
V++ Y V+IWN +T+ E ++ ET V A ++ I+ GSDD ++V++ TG
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 KCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271
+ + H + S + ++SGS D T+K W N E A+ Q + E H
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHE-----H 141
Query: 272 MMQLI--EPQFQRDFIS-LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
+ + P+ F S L R + ++ L P L Q
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------ 183
Query: 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388
+ + D + D ++++ S D +I++W+ ++ + TL GH S S
Sbjct: 184 ---------ERGVNYVDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 389 MELRNN--ILVSGNADSTVKVWD 409
I++SG+ D T+K+W+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 225
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D T+KVW
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497
T+ + ++ S D + +W++ + + + TLS +++
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K +++SG+ D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAER 253
IGH + ++ G +I S D + W+ A +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
+++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ ++ +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 238 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 297 D--GQTLFAGYTDNVIRVW 313
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + ++ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + ++I
Sbjct: 68 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 123 ISGSRDKTIKVWTIKGQCLA 142
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 20/161 (12%)
Query: 342 HVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN----- 394
H D+ D ++SGS D +I+VW + G TL+GH S + + N
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD 164
Query: 395 ---ILVSGNADSTVKVW---------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE 442
++S D VK W D + + DG + S D I +W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 443 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI 483
+ +TL + S N ++ + +KV+ +
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 62
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 123 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 182 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 219
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 23 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 76
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D T+KVW
Sbjct: 77 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 136
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 137 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
T+ + ++ S D + +W++ + + + TLS Q V L F+ +R+ + ++
Sbjct: 197 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 250
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
+K+ F L+P Y + +P PH + + +
Sbjct: 251 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 295
Query: 566 ITSSDDGTVKLWDVKTGE 583
D +++W V T
Sbjct: 296 FAGYTDNVIRVWQVMTAN 313
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 102/278 (36%), Gaps = 44/278 (15%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K +++SG+ D +K+
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 128 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
IGH + ++ G +I S D + W+ A + M +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-----------------KKAMYTLS 229
Query: 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAED-NLLWREKCLEAATLH 336
Q + ++ L F P AA T + + D L + E A
Sbjct: 230 AQDE------------VFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYS 276
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
+ + H L + DG + +G D IRVW+ + N
Sbjct: 277 KAAEPHAVSL-AWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
+++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 113 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ ++ +
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 232 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 290
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 291 D--GQTLFAGYTDNVIRVW 307
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 61
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + ++ +
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 110
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 111 KKASMIISGSRDKTIKVWTIK 131
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + ++I
Sbjct: 62 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 117 ISGSRDKTIKVWTIKGQCLA 136
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 56
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 92
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 225
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D T+KVW
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
T+ + ++ S D + +W++ + + + TLS Q V L F+ +R+ + ++
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
+K+ F L+P Y + +P PH + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
D +++W V T
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 102/278 (36%), Gaps = 44/278 (15%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K +++SG+ D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
IGH + ++ G +I S D + W+ A + M +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-----------------KKAMYTLS 235
Query: 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAED-NLLWREKCLEAATLH 336
Q + ++ L F P AA T + + D L + E A
Sbjct: 236 AQDE------------VFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYS 282
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
+ + H L + DG + +G D IRVW+ + N
Sbjct: 283 KAAEPHAVSL-AWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
+++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ ++ +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 238 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 297 D--GQTLFAGYTDNVIRVW 313
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + ++ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + ++I
Sbjct: 68 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 123 ISGSRDKTIKVWTIKGQCLA 142
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 62
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 225
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D T+KVW
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
T+ + ++ S D + +W++ + + + TLS Q V L F+ +R+ + ++
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
+K+ F L+P Y + +P PH + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
D +++W V T
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 102/278 (36%), Gaps = 44/278 (15%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K +++SG+ D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
IGH + ++ G +I S D + W+ A + M +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-----------------KKAMYTLS 235
Query: 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAED-NLLWREKCLEAATLH 336
Q + ++ L F P AA T + + D L + E A
Sbjct: 236 AQDE------------VFSLAF-SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYS 282
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
+ + H L + DG + +G D IRVW+ + N
Sbjct: 283 KAAEPHAVSL-AWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
+++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ ++ +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 238 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 297 D--GQTLFAGYTDNVIRVW 313
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + ++ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + ++I
Sbjct: 68 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 123 ISGSRDKTIKVWTIKGQCLA 142
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 62
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIMLWNL 225
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S ++ ++ + ++++SG+ D T+KVW
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
T+ + ++ S D + +W++ + + + TLS Q V L F+ +R+ + ++
Sbjct: 203 TASPD--GTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
+K+ F L+P Y + +P PH + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
D +++W V T
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGK--LVVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K +++SG+ D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAER 253
IGH + ++ G +I S D + W+ A +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 114 --LLVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
+++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ ++ +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 238 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA 296
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 297 D--GQTLFAGYTDNVIRVW 313
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + ++ +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVMSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 117 KKASMIISGSRDKTIKVWTIK 137
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + ++I
Sbjct: 68 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 123 ISGSRDKTIKVWTIKGQCLA 142
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 62
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 36/229 (15%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLF------- 424
LR TL GH + + + N+L+S + D T+ W + +K + F
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 425 -------DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNAD 475
DG + +S S D ++R+W+ +G +GH+S +++ + + ++SG+ D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCL-----QFNSRFVITSSDDGTVKLWDVKTGE 530
T+KVW I GQCL TL G N S V + +S +I++ +D VK W++ +
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579
+ N + + P + + ++ DG + LW++
Sbjct: 188 IEADFIGH---NSNINTLTASP--------DGTLIASAGKDGEIXLWNL 225
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/318 (20%), Positives = 124/318 (38%), Gaps = 62/318 (19%)
Query: 301 QPEDLLRAA--QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358
QP LL A+ +T SW+ +D + +H+ DG + +S
Sbjct: 29 QPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82
Query: 359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVW-------- 408
S D ++R+W+ +G +GH+S +++ + + ++SG+ D T+KVW
Sbjct: 83 ASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA 142
Query: 409 ------DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS----L 458
D VS + + D V ++S D ++ W + +GH S L
Sbjct: 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSD 517
T+ + ++ S D + +W++ + + TLS Q V L F+ +R+ + ++
Sbjct: 203 TASPD--GTLIASAGKDGEIXLWNLAAKKAXYTLSA----QDEVFSLAFSPNRYWLAAAT 256
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-------PHL-----QFNSRFV 565
+K+ F L+P Y + +P PH + + +
Sbjct: 257 ATGIKV---------------FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 566 ITSSDDGTVKLWDVKTGE 583
D +++W V T
Sbjct: 302 FAGYTDNVIRVWQVXTAN 319
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 99/278 (35%), Gaps = 44/278 (15%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMVKI 166
T +S S D TLR+W + +GE VGH + V V D K ++SG+ D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 167 WNPDTEECLHAELQETE-------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
W +CL L + V I+S +D +K W+ +
Sbjct: 134 WTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 220 IGHTGGV--WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277
IGH + ++ G +I S D + W+ A + + + + +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK--------------KAXYTLSAQD 238
Query: 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAED-NLLWREKCLEAATLH 336
F F P AA T + + D L + E A
Sbjct: 239 EVFSLAF----------------SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYS 282
Query: 337 RNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN 374
+ + H L + DG + +G D IRVW+ + N
Sbjct: 283 KAAEPHAVSL-AWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 88/259 (33%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKCL------------------ 114
+ KGH V C L G+ +S S D TL++W TG+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK 118
Query: 115 ---LVSGSRDATLRVWHIESGECLHVLVGH---LAAVRCV-------------------- 148
++SGSRD T++VW I+ G+CL L+GH ++ VR V
Sbjct: 119 ASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 149 -------QY--------------------DGKLVVSGAYDYMVKIWNPDTEECLHAELQE 181
Q+ DG L+ S D + +WN ++ + +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 182 TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG------------VWSS 229
EV S ++ ++ + +KV+S + L G WS+
Sbjct: 238 DEV-FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296
Query: 230 QMAGNIIISGSTDRTLKGW 248
G + +G TD ++ W
Sbjct: 297 D--GQTLFAGYTDNVIRVW 313
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 448 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVS-----GQCLQTLSGRNKHQ 499
LR TL GH + + + N+L+S + D T+ W + G +++ G + H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-HI 67
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
L + + +++S D T++LWDV TGE F+ + + +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-----------RFVGHKSDVXSVDID 116
Query: 560 FNSRFVITSSDDGTVKLWDVK 580
+ +I+ S D T+K+W +K
Sbjct: 117 KKASXIISGSRDKTIKVWTIK 137
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 179 LQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNII 236
+Q+ + YAL S S D TL++W TG+ + +GH V S + + I
Sbjct: 68 VQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 237 ISGSTDRTLKGWSNAERILA 256
ISGS D+T+K W+ + LA
Sbjct: 123 ISGSRDKTIKVWTIKGQCLA 142
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFL 547
TL G N +++ ++++S D T+ W + TG+ F P+ S F
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRS--------FK 62
Query: 548 IYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+S + L + + +++S D T++LWDV TGE
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 28/209 (13%)
Query: 356 VVSGSLDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV 411
VV+GSLD ++VW+ E +L+ +L GHQ +++ + I S + D+ +++WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 412 SGTK------------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL--MGHQS 457
+G + L F D ++ +G+ + ++ ESG ++L G
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSP---DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 458 LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS 515
L+ L SG D + ++DI +G+ L TL G H + L F +S+ ++T+
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTA 224
Query: 516 SDDGTVKLWDVKTGEFSTPL--MSSFILN 542
SDDG +K++DV+ + L +S++LN
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGH--QSLTSGMELRNNILVSGNADSTVKVWDIVSG 413
S SLD IR+W+ E+G ++ + T + L +G V ++ + SG
Sbjct: 95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154
Query: 414 TK--------KLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTS 460
K K + I DG ++ SG++D I +++ +G L HTL GH +SLT
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT- 213
Query: 461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507
+ +LV+ + D +K++D+ TLSG H S V + F
Sbjct: 214 -FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---HASWVLNVAF 256
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 429 VVSGSLDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIV 484
VV+GSLD ++VW+ E +L+ +L GHQ +++ + I S + D+ +++WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG--EFSTPLMSSFILN 542
+G+ ++++ + +S+++ T + G V ++ V++G E+S FIL+
Sbjct: 111 NGKQIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
Y P + +++ + + DG + ++D+ TG+ +
Sbjct: 170 IAY---------SP----DGKYLASGAIDGIINIFDIATGKLLH 200
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 17/151 (11%)
Query: 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMELRNNILVSGNAD 402
+ DG ++ SG++D I +++ +G L HTL GH +SLT + +LV+ + D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT--FSPDSQLLVTASDD 227
Query: 403 STVKVWDI--------VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
+K++D+ +SG + + D H VS S D S++VW+ + HT
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 454 GHQSLTSGMELRNN--ILVSGNADSTVKVWD 482
HQ G++ N +VS D + ++D
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L SG+ D + ++ I +G+ LH L GH +R + + D +L+V+ + D +KI+
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY----- 233
Query: 173 ECLHAELQETEVELSHGYALRSRIVSGSDDNT----------LKVWSATTGKCLRTLIGH 222
+ HA L T LS G+A V+ D+T +KVW T C+ T H
Sbjct: 234 DVQHANLAGT---LS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289
Query: 223 TGGVWSSQMAGN 234
VW + GN
Sbjct: 290 QDQVWGVKYNGN 301
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Query: 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL--MGHQSLTSGMELRNNILVSGNADST 404
F D ++ +G+ + ++ ESG ++L G L+ L SG D
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 405 VKVWDIVSGT-------KKLMFRICLF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGH 455
+ ++DI +G + R F D +V+ S D I++++ + NL TL GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 456 QS--LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRF-- 511
S L + VS ++D +VKVWD+ + C+ T HQ V +++N
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF---DHQDQVWGVKYNGNGSK 304
Query: 512 VITSSDDGTVKLWD 525
+++ DD + ++D
Sbjct: 305 IVSVGDDQEIHIYD 318
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 60 SVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSA--TTGKCLLVS 117
SV+I+ T PI L H I + + D + W+ + L +
Sbjct: 85 SVDIS-HTLPIAASSSLDAH----IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 118 GSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECL 175
G+ + ++ +ESG+ + L + + Y DGK + SGA D ++ I++ T + L
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 176 HAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHT 223
H S ++ S+ +V+ SDD +K++ TL GH
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 94 IVSGSDDNTLKVWS----------ATTGKCLLV-------------SGSRDATLRVWHIE 130
+V+GS D+ +KVW + G L V S S DA +R+W +E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 131 SGECLHVL-VGHLAA-VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH 188
+G+ + + G + A D + + +G + V I+ ++ + ++ + LS
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 189 GYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTL 245
Y+ + + SG+ D + ++ TGK L TL GH + S + + ++++ S D +
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230
Query: 246 K 246
K
Sbjct: 231 K 231
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 323 LLWR----EKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378
+LW+ +K A +H + DG +SGS D +R+W+ +G
Sbjct: 408 ILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR 467
Query: 379 LMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH-------- 428
+GH L+ L N +VS + D T+K+W+ + K + I H
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVR 524
Query: 429 ---------VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADST 477
+VS S D +++VW + LR TL GH S + + ++ SG D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKT 528
V +WD+ G+ L +L S + L F+ +R+ + ++ + +K+WD+++
Sbjct: 585 VLLWDLAEGKKLYSLEA----NSVIHALCFSPNRYWLCAATEHGIKIWDLES 632
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 48/239 (20%)
Query: 375 LRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDI-------------VSGTKKLM 418
L+ T+ H + + + +I+VS + D ++ +W + ++G +
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 419 FRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNAD 475
+ L DG +SGS D +R+W+ +G +GH L+ L N +VS + D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 476 STVKVWDIVSGQCLQTLS-GRNKHQSAVTCLQFNSR----FVITSSDDGTVKLWDVKTGE 530
T+K+W+ + G+C T+S G H+ V+C++F+ ++++S D TVK+W++ +
Sbjct: 494 RTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 531 FSTPL------MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+ L +S+ ++P + + DG V LWD+ G+
Sbjct: 553 LRSTLAGHTGYVSTVAVSP-----------------DGSLCASGGKDGVVLLWDLAEGK 594
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 116 VSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE 173
+SGS D LR+W + +G VGH V V + D + +VS + D +K+WN E
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGE 504
Query: 174 CLHAELQETE--------VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
C + + E V S L+ IVS S D T+KVW+ + K TL GHTG
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 226 VWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMM 273
V + ++ G++ SG D + W AE G+ + S E + H +
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAE-----GKKLYSLEANSVIHAL 608
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG 413
+VS S D +++VW + LR TL GH S + + ++ SG D V +WD+ G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 414 TK-------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL 452
K ++ +C + + + + I++W+ ES ++ L
Sbjct: 594 KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 31/121 (25%)
Query: 78 GHDDHVIT-CLQFSGSRIVSGSDDNTLKVWSATTGKC----------------------- 113
GH V++ +IVS S D T+K+W+ T G+C
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 114 ----LLVSGSRDATLRVWHIESGECLHVLVGHLAAVR--CVQYDGKLVVSGAYDYMVKIW 167
+VS S D T++VW++ + + L GH V V DG L SG D +V +W
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 168 N 168
+
Sbjct: 589 D 589
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
R + H+ ++ + D +VS S D + +W++ + N H + S +T
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
N + G D+ ++++ V +++L C F D +V+ S DT+ +
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
W+ E+G T GH + L + + VSG D++ K+WD+ G C QT +G
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 239
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+A+ C N T SDD T +L+D++ + I+ + +S+
Sbjct: 240 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 291
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
+ R ++ DD +WD
Sbjct: 292 --SGRLLLAGYDDFNCNVWDA 310
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 408
D +V+ S DT+ +W+ E+G T GH + L + + VSG D++ K+W
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 409 DIVSGTKKLMF--------RICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459
D+ G + F IC F +G +GS D + R+++ + T H ++
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNII 281
Query: 460 SGM-----ELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV 512
G+ +L++G D VWD + L+G H + V+CL + V
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAV 338
Query: 513 ITSSDDGTVKLWD 525
T S D +K+W+
Sbjct: 339 ATGSWDSFLKIWN 351
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 64 NWRTRP--IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT-----------T 110
N +TR ++ + L GH ++ C ++IV+ S D T +W T
Sbjct: 136 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 111 GKC----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG 158
G L VSG+ DA+ ++W + G C GH + + + + +G +G
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 255
Query: 159 AYDYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ D ++++ ++ L + T V S L +++G DD VW A
Sbjct: 256 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWDALK 312
Query: 213 GKCLRTLIGHTG-----GVWSSQMAGNIIISGSTDRTLKGWS 249
L GH GV MA + +GS D LK W+
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMA---VATGSWDSFLKIWN 351
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 44/306 (14%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
LLVS S+D L +W + +H + + V Y G V G D + I+N T
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
Query: 172 EEC---LHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
E + EL LS L ++IV+ S D T +W TG+ T GHTG V
Sbjct: 140 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 199
Query: 228 SSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
S +A + + +SG+ D + K W E + C T H + + I
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDI-------NAI 243
Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
P A F D TCR + A+ L+ H N +
Sbjct: 244 CFFPNGNA-----FATGSD----DATCRLFDLRADQELMTYS--------HDNIICGITS 286
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADS 403
+ F G +++G D + VW+A + L GH + S + + ++ + +G+ DS
Sbjct: 287 V-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 404 TVKVWD 409
+K+W+
Sbjct: 346 FLKIWN 351
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
+VS S D + +W++ + N H + S +T N + G D+ ++++ +
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 487 Q----CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
+ + L+G H ++C +F + ++TSS D T LWD++TG+ +T
Sbjct: 141 EGNVRVSRELAG---HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG---- 193
Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ ++ L ++R ++ + D + KLWDV+ G
Sbjct: 194 -------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 449 RHTLMGHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
R TL GH + M + +LVS + D + +WD + + + R+ +TC
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAY 116
Query: 507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
S +V D ++++KT E + + + Y C L N +
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDDNQ--I 168
Query: 566 ITSSDDGTVKLWDVK 580
+TSS D T LWD++
Sbjct: 169 VTSSGDTTCALWDIE 183
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
R + H+ ++ + D +VS S D + +W++ + N H + S +T
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
N + G D+ ++++ V +++L C F D +V+ S DT+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
W+ E+G T GH + L + + VSG D++ K+WD+ G C QT +G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+A+ C N T SDD T +L+D++ + I+ + +S+
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
+ R ++ DD +WD
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 408
D +V+ S DT+ +W+ E+G T GH + L + + VSG D++ K+W
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 409 DIVSGTKKLMF--------RICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459
D+ G + F IC F +G +GS D + R+++ + T H ++
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 460 SGM-----ELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV 512
G+ +L++G D VWD + L+G H + V+CL + V
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAV 327
Query: 513 ITSSDDGTVKLWD 525
T S D +K+W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 64 NWRTRP--IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT-----------T 110
N +TR ++ + L GH ++ C ++IV+ S D T +W T
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 111 GKC----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG 158
G L VSG+ DA+ ++W + G C GH + + + + +G +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 159 AYDYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ D ++++ ++ L + T V S L +++G DD VW A
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWDALK 301
Query: 213 GKCLRTLIGHTG-----GVWSSQMAGNIIISGSTDRTLKGWS 249
L GH GV MA + +GS D LK W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMA---VATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 44/306 (14%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
LLVS S+D L +W + +H + + V Y G V G D + I+N T
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 172 EEC---LHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
E + EL LS L ++IV+ S D T +W TG+ T GHTG V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 228 SSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
S +A + + +SG+ D + K W E + C T H + + I
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDI-------NAI 232
Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
P A F D TCR + A+ L+ H N +
Sbjct: 233 CFFPNGNA-----FATGSD----DATCRLFDLRADQELM--------TYSHDNIICGITS 275
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADS 403
+ F G +++G D + VW+A + L GH + S + + ++ + +G+ DS
Sbjct: 276 V-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 404 TVKVWD 409
+K+W+
Sbjct: 335 FLKIWN 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
+VS S D + +W++ + N H + S +T N + G D+ ++++ +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 487 Q----CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
+ + L+G H ++C +F + ++TSS D T LWD++TG+ +T
Sbjct: 130 EGNVRVSRELAG---HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG---- 182
Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ ++ L ++R ++ + D + KLWDV+ G
Sbjct: 183 -------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 449 RHTLMGHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
R TL GH + M + +LVS + D + +WD + + + R+ +TC
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAY 105
Query: 507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
S +V D ++++KT E + + + Y C L N +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDDNQ--I 157
Query: 566 ITSSDDGTVKLWDVK 580
+TSS D T LWD++
Sbjct: 158 VTSSGDTTCALWDIE 172
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
R + H+ ++ + D +VS S D + +W++ + N H + S +T
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
N + G D+ ++++ V +++L C F D +V+ S DT+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
W+ E+G T GH + L + + VSG D++ K+WD+ G C QT +G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+A+ C N T SDD T +L+D++ + I+ + +S+
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
+ R ++ DD +WD
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 408
D +V+ S DT+ +W+ E+G T GH + L + + VSG D++ K+W
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 409 DIVSGTKKLMF--------RICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459
D+ G + F IC F +G +GS D + R+++ + T H ++
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 460 SGM-----ELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV 512
G+ +L++G D VWD + L+G H + V+CL + V
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAV 327
Query: 513 ITSSDDGTVKLWD 525
T S D +K+W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 64 NWRTRP--IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT-----------T 110
N +TR ++ + L GH ++ C ++IV+ S D T +W T
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 111 GKC----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG 158
G L VSG+ DA+ ++W + G C GH + + + + +G +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 159 AYDYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ D ++++ ++ L + T V S L +++G DD VW A
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWDALK 301
Query: 213 GKCLRTLIGHTG-----GVWSSQMAGNIIISGSTDRTLKGWS 249
L GH GV MA + +GS D LK W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMA---VATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 44/306 (14%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
LLVS S+D L +W + +H + + V Y G V G D + I+N T
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 172 EEC---LHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
E + EL LS L ++IV+ S D T +W TG+ T GHTG V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 228 SSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
S +A + + +SG+ D + K W E + C T H + + I
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDI-------NAI 232
Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
P A F D TCR + A+ L+ H N +
Sbjct: 233 CFFPNGNA-----FATGSD----DATCRLFDLRADQELM--------TYSHDNIICGITS 275
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADS 403
+ F G +++G D + VW+A + L GH + S + + ++ + +G+ DS
Sbjct: 276 V-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 404 TVKVWD 409
+K+W+
Sbjct: 335 FLKIWN 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
+VS S D + +W++ + N H + S +T N + G D+ ++++ +
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 487 Q----CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
+ + L+G H ++C +F + ++TSS D T LWD++TG+ +T
Sbjct: 130 EGNVRVSRELAG---HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG---- 182
Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ ++ L ++R ++ + D + KLWDV+ G
Sbjct: 183 -------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 449 RHTLMGHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
R TL GH + M + +LVS + D + +WD + + + R+ +TC
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAY 105
Query: 507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
S +V D ++++KT E + + + Y C L N +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDDNQ--I 157
Query: 566 ITSSDDGTVKLWDVK 580
+TSS D T LWD++
Sbjct: 158 VTSSGDTTCALWDIE 172
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
R + H+ ++ + D ++S S D + +W++ + N H + S +T
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
N + G D+ ++++ V +++L C F D +V+ S DT+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
W+ E+G T GH + L + + VSG D++ K+WD+ G C QT +G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+A+ C N T SDD T +L+D++ + I+ + +S+
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
+ R ++ DD +WD
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 408
D +V+ S DT+ +W+ E+G T GH + L + + VSG D++ K+W
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 409 DIVSGTKKLMF--------RICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459
D+ G + F IC F +G +GS D + R+++ + T H ++
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 460 SGM-----ELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV 512
G+ +L++G D VWD + L+G H + V+CL + V
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAV 327
Query: 513 ITSSDDGTVKLWD 525
T S D +K+W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 64 NWRTRP--IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT-----------T 110
N +TR ++ + L GH ++ C ++IV+ S D T +W T
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 111 GKC----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG 158
G L VSG+ DA+ ++W + G C GH + + + + +G +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 159 AYDYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ D ++++ ++ L + T V S L +++G DD VW A
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWDALK 301
Query: 213 GKCLRTLIGHTG-----GVWSSQMAGNIIISGSTDRTLKGWS 249
L GH GV MA + +GS D LK W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMA---VATGSWDSFLKIWN 340
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 44/306 (14%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
LL+S S+D L +W + +H + + V Y G V G D + I+N T
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 172 EEC---LHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
E + EL LS L ++IV+ S D T +W TG+ T GHTG V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 228 SSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
S +A + + +SG+ D + K W E + C T H + + I
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDI-------NAI 232
Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
P A F D TCR + A+ L+ H N +
Sbjct: 233 CFFPNGNA-----FATGSD----DATCRLFDLRADQELM--------TYSHDNIICGITS 275
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADS 403
+ F G +++G D + VW+A + L GH + S + + ++ + +G+ DS
Sbjct: 276 V-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 404 TVKVWD 409
+K+W+
Sbjct: 335 FLKIWN 340
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
++S S D + +W++ + N H + S +T N + G D+ ++++ +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 487 Q----CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
+ + L+G H ++C +F + ++TSS D T LWD++TG+ +T
Sbjct: 130 EGNVRVSRELAG---HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG---- 182
Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ ++ L ++R ++ + D + KLWDV+ G
Sbjct: 183 -------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 449 RHTLMGHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
R TL GH + M + +L+S + D + +WD + + + R+ +TC
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAY 105
Query: 507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
S +V D ++++KT E + + + Y C L N +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDDNQ--I 157
Query: 566 ITSSDDGTVKLWDVK 580
+TSS D T LWD++
Sbjct: 158 VTSSGDTTCALWDIE 172
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 28/261 (10%)
Query: 337 RNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR 392
R + H+ ++ + D ++S S D + +W++ + N H + S +T
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 393 NNILVSGNADSTVKVWDI------VSGTKKL-----MFRICLF-DGVHVVSGSLDTSIRV 440
N + G D+ ++++ V +++L C F D +V+ S DT+ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 441 WEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498
W+ E+G T GH + L + + VSG D++ K+WD+ G C QT +G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558
+A+ C N T SDD T +L+D++ + I+ + +S+
Sbjct: 229 INAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK------- 280
Query: 559 QFNSRFVITSSDDGTVKLWDV 579
+ R ++ DD +WD
Sbjct: 281 --SGRLLLAGYDDFNCNVWDA 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 351 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 408
D +V+ S DT+ +W+ E+G T GH + L + + VSG D++ K+W
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 409 DIVSGTKKLMF--------RICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459
D+ G + F IC F +G +GS D + R+++ + T H ++
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHDNII 270
Query: 460 SGM-----ELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV 512
G+ +L++G D VWD + L+G H + V+CL + V
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAV 327
Query: 513 ITSSDDGTVKLWD 525
T S D +K+W+
Sbjct: 328 ATGSWDSFLKIWN 340
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 42/222 (18%)
Query: 64 NWRTRP--IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSAT-----------T 110
N +TR ++ + L GH ++ C ++IV+ S D T +W T
Sbjct: 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 111 GKC----------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSG 158
G L VSG+ DA+ ++W + G C GH + + + + +G +G
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 159 AYDYMVKIWNPDTEECLHAELQE------TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ D ++++ ++ L + T V S L +++G DD VW A
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWDALK 301
Query: 213 GKCLRTLIGHTG-----GVWSSQMAGNIIISGSTDRTLKGWS 249
L GH GV MA + +GS D LK W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMA---VATGSWDSFLKIWN 340
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 44/306 (14%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDT 171
LL+S S+D L +W + +H + + V Y G V G D + I+N T
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 172 EEC---LHAELQETEVELSHGYALR-SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227
E + EL LS L ++IV+ S D T +W TG+ T GHTG V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 228 SSQMAGN--IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285
S +A + + +SG+ D + K W E + C T H + + I
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDI-------NAI 232
Query: 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345
P A F D TCR + A+ L+ H N +
Sbjct: 233 CFFPNGNA-----FATGSD----DATCRLFDLRADQELM--------TYSHDNIICGITS 275
Query: 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADS 403
+ F G +++G D + VW+A + L GH + S + + ++ + +G+ DS
Sbjct: 276 V-SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 404 TVKVWD 409
+K+W+
Sbjct: 335 FLKIWN 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
++S S D + +W++ + N H + S +T N + G D+ ++++ +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 487 Q----CLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
+ + L+G H ++C +F + ++TSS D T LWD++TG+ +T
Sbjct: 130 EGNVRVSRELAG---HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG---- 182
Query: 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ ++ L ++R ++ + D + KLWDV+ G
Sbjct: 183 -------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 449 RHTLMGHQSLTSGME--LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
R TL GH + M + +L+S + D + +WD + + + R+ +TC
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAY 105
Query: 507 FNS-RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565
S +V D ++++KT E + + + Y C L N +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSC------CRFLDDNQ--I 157
Query: 566 ITSSDDGTVKLWDVK 580
+TSS D T LWD++
Sbjct: 158 VTSSGDTTCALWDIE 172
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 37/255 (14%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADSTVKVWD 409
D +VS S D + VW++ + N H T+ + + G D+ V+
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134
Query: 410 IVSGTKKLM-------------FRICLFDG--VHVVSGSLDTSIRVWEAESGNLRHTLMG 454
+ + M C F + +++ S D + +W+ ESG L + G
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194
Query: 455 HQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N 508
H + ++L N VSG D VWD+ SGQC+Q H+S V +++ +
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPS 251
Query: 509 SRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
+ SDD T +L+D++ E + S I + R +
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV----------DFSLSGRLLFA 301
Query: 568 SSDDGTVKLWDVKTG 582
+D T+ +WDV G
Sbjct: 302 GYNDYTINVWDVLKG 316
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 74 KVLKGHDDHVITC-LQFSGSRIVSGSDDNTLKVWSATTGKCL------------------ 114
K + H +++ C S +I++ S D T +W +G+ L
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 115 -----LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIW 167
VSG D VW + SG+C+ H + V V+Y G SG+ D +++
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Query: 168 N--PDTEECLHAELQETEVELSHGYALRSRIV-SGSDDNTLKVWSATTGKCLRTLIGHTG 224
+ D E ++++ S ++L R++ +G +D T+ VW G + L GH
Sbjct: 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327
Query: 225 GVWSSQMA--GNIIISGSTDRTLKGWS 249
V + +++ G SGS D TL+ W+
Sbjct: 328 RVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 24/196 (12%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGNADST 404
F + +++ S D + +W+ ESG L + GH + ++L N VSG D
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 405 VKVWDIVSGTKKLMFRICLFD---------GVHVVSGSLDTSIRVWEAESGNLRHTLMGH 455
VWD+ SG F D G SGS D + R+++ + + +
Sbjct: 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSK 280
Query: 456 QSLTSG-----MELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N 508
+S+ G L +L +G D T+ VWD++ G + L G H++ V+ L+ +
Sbjct: 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---HENRVSTLRVSPD 337
Query: 509 SRFVITSSDDGTVKLW 524
+ S D T+++W
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 28/130 (21%)
Query: 65 WRTRPIKDPKVLKGHDDHVITCLQF-SGSRIVSGSDDNTLKVWS---------------- 107
W R + + + H+ V + + SG SGSDD T +++
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII 284
Query: 108 --------ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC--VQYDGKLVVS 157
+ +G+ LL +G D T+ VW + G + +L GH V V DG S
Sbjct: 285 FGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS 343
Query: 158 GAYDYMVKIW 167
G++D+ +++W
Sbjct: 344 GSWDHTLRVW 353
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 565 VITSSDDGTVKLWDVKTGEFIRN 587
++T+S DGT LWDV++G+ +++
Sbjct: 169 ILTASGDGTCALWDVESGQLLQS 191
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 27/250 (10%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 409
DG +SGS D ++R+W+ +G +GH L+ N +VSG+ D T+K+W+
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 410 IVSGTKKLMFRICLFDGVH------------VVSGSLDTSIRVWEAESGNLRHTLMGHQS 457
+ K + + V +VS D ++VW + L+ +GH
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 458 L--TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVIT 514
T + ++ SG D +WD+ G+ L TL G + + L F+ +R+ +
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPNRYWLC 249
Query: 515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS--RFVITSSDDG 572
++ ++K+WD++ L I ++P C L +++ + + D
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSS----KAEPPQCTSLAWSADGQTLFAGYTDN 305
Query: 573 TVKLWDVKTG 582
V++W V G
Sbjct: 306 LVRVWQVTIG 315
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 38/185 (20%)
Query: 76 LKGHDD---HVITCLQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
LKGH+ + T QF I+S S D T+ +W T +
Sbjct: 11 LKGHNGWVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 114 -------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
+SGS D TLR+W + +G VGH V V + D + +VSG+ D +
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSR-----IVSGSDDNTLKVWSATTGKCLRTL 219
K+WN C + E+ E IVS D +KVW+ K
Sbjct: 130 KLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 220 IGHTG 224
IGHTG
Sbjct: 189 IGHTG 193
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 114 LLVSGSRDATLRVWHIESGECLH-----VLVGHLAAVR--CVQYDGKLVVSGAYDYMVKI 166
+++S SRD T+ +W + E + L GH V + DG+ +SG++D +++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 167 WNPDTEECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
W+ T + T+ LS ++ +R IVSGS D T+K+W+ T G C T+ +
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHS 148
Query: 226 VW------SSQMAGNIIISGSTDRTLKGWSNAE 252
W S + II+S D+ +K W+ A
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 40/182 (21%)
Query: 74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL----------------- 114
+ L+GH H ++ + S G +SGS D TL++W TTG
Sbjct: 57 RALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 115 ----LVSGSRDATLRVWHIESGECLHVLV--GHLAAVRCVQY----DGKLVVSGAYDYMV 164
+VSGSRD T+++W+ G C + + H V CV++ ++VS +D +V
Sbjct: 116 DNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 165 KIWN-----PDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
K+WN T H T G S SG D +W GK L TL
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDG----SLCASGGKDGQAMLWDLNEGKHLYTL 230
Query: 220 IG 221
G
Sbjct: 231 DG 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 26/225 (11%)
Query: 330 LEAATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSL 385
L T R H D+ F D +VSGS D +I++W G ++T+ H
Sbjct: 92 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEW 150
Query: 386 TSGMEL----RNNILVSGNADSTVKVWDI---------VSGTKKLMFRICLFDGVHVVSG 432
S + N I+VS D VKVW++ + T L DG SG
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 433 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI--------V 484
D +W+ G +TL G + + N + ++K+WD+ +
Sbjct: 211 GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
+ + T S Q + + + D V++W V G
Sbjct: 271 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 444 ESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGR----N 496
E LR TL GH + + ++++S + D T+ +W + + + R +
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
H + + + +F ++ S DGT++LWD+ TG + F+ +++ +L
Sbjct: 63 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-----------RFVGHTKDVLSV 111
Query: 557 HLQFNSRFVITSSDDGTVKLWD 578
++R +++ S D T+KLW+
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWN 133
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
TL G N + + ++++S D T+ +W + E + + + +F+ S
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--S 67
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
++ + +F ++ S DGT++LWD+ TG R
Sbjct: 68 DVVISS----DGQFALSGSWDGTLRLWDLTTGTTTR 99
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 37/255 (14%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWD 409
DG +SGS D ++R+W+ +G +GH L+ N +VSG+ D T+K+W+
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 410 IVSGTKKLMFRICLFDGVH-----------------VVSGSLDTSIRVWEAESGNLRHTL 452
+ + + + D H +VS D ++VW + L+
Sbjct: 157 TLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 453 MGHQSL--TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-S 509
+GH T + ++ SG D +WD+ G+ L TL G + + L F+ +
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IINALCFSPN 267
Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS--RFVIT 567
R+ + ++ ++K+WD++ L I ++P C L +++ + +
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS----KAEPPQCTSLAWSADGQTLFA 323
Query: 568 SSDDGTVKLWDVKTG 582
D V++W V G
Sbjct: 324 GYTDNLVRVWQVTIG 338
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 38/185 (20%)
Query: 76 LKGHDD---HVITCLQFSGSRIVSGSDDNTLKVWSATTGKC------------------- 113
LKGH+ + T QF I+S S D T+ +W T +
Sbjct: 34 LKGHNGWVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 114 -------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
+SGS D TLR+W + +G VGH V V + D + +VSG+ D +
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSR-----IVSGSDDNTLKVWSATTGKCLRTL 219
K+WN C + E+ E IVS D +KVW+ K
Sbjct: 153 KLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 220 IGHTG 224
IGHTG
Sbjct: 212 IGHTG 216
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 114 LLVSGSRDATLRVWHIESGECLH-----VLVGHLAAVR--CVQYDGKLVVSGAYDYMVKI 166
+++S SRD T+ +W + E + L GH V + DG+ +SG++D +++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 167 WNPDTEECLHAELQETEVELSHGYALRSR-IVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
W+ T + T+ LS ++ +R IVSGS D T+K+W+ T G C T+ +
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHS 171
Query: 226 VW------SSQMAGNIIISGSTDRTLKGWSNAE 252
W S + II+S D+ +K W+ A
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 40/182 (21%)
Query: 74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL----------------- 114
+ L+GH H ++ + S G +SGS D TL++W TTG
Sbjct: 80 RALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 115 ----LVSGSRDATLRVWHIESGECLHVLV--GHLAAVRCVQY----DGKLVVSGAYDYMV 164
+VSGSRD T+++W+ G C + + H V CV++ ++VS +D +V
Sbjct: 139 DNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 165 KIWN-----PDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
K+WN T H T G S SG D +W GK L TL
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDG----SLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 220 IG 221
G
Sbjct: 254 DG 255
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 444 ESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGR----N 496
E LR TL GH + + ++++S + D T+ +W + + + R +
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 497 KHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556
H + + + +F ++ S DGT++LWD+ TG + F+ +++ +L
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR-----------RFVGHTKDVLSV 134
Query: 557 HLQFNSRFVITSSDDGTVKLWD 578
++R +++ S D T+KLW+
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWN 156
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 26/225 (11%)
Query: 330 LEAATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSL 385
L T R H D+ F D +VSGS D +I++W G ++T+ H
Sbjct: 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEW 173
Query: 386 TSGMEL----RNNILVSGNADSTVKVWDI---------VSGTKKLMFRICLFDGVHVVSG 432
S + N I+VS D VKVW++ + T L DG SG
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 433 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI--------V 484
D +W+ G +TL G + + N + ++K+WD+ +
Sbjct: 234 GKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTG 529
+ + T S Q + + + D V++W V G
Sbjct: 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
TL G N + + ++++S D T+ +W + E + + + +F+ S
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV--S 90
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
++ + +F ++ S DGT++LWD+ TG R
Sbjct: 91 DVVISS----DGQFALSGSWDGTLRLWDLTTGTTTR 122
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 340 KTHVPDLF--GFQFDGVHVVSGSLDTSIRVWEAES-----GNL--RHTLMGHQSLTSGME 390
K H P + F +G V G LD++ ++ S GN+ L GH+ S +
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 391 L---RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN 447
+ L++G+ D T +WD+ +G RI +F GS E SG+
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQ-----RISIF-------GS--------EFPSGH 204
Query: 448 LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI-VSGQCLQTLSGRNKHQSAVTCLQ 506
L S L N+ +SG+ D+TV++WD+ ++ + ++T G ++V
Sbjct: 205 TADVLS-----LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 507 FNSRFVITSSDDGTVKLWDVKTG 529
RF T SDDGT +L+D++TG
Sbjct: 260 DGQRFG-TGSDDGTCRLFDMRTG 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 126/316 (39%), Gaps = 63/316 (19%)
Query: 104 KVWSA--TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGA 159
KV+S T K +VS S+D L VW+ + + H + H V + +G+ V G
Sbjct: 68 KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG 127
Query: 160 YDYMVKIWNPDTEECLHAELQETEVELSH-GYA--------LRSRIVSGSDDNTLKVWSA 210
D I+N ++ + + V H GYA +R+++GS D T +W
Sbjct: 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV 187
Query: 211 TTGKCLRTL-----IGHTGGVWS---SQMAGNIIISGSTDRTLKGWS------------- 249
TTG+ + GHT V S + + N+ ISGS D T++ W
Sbjct: 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247
Query: 250 -----NAERILAIGQLI------DSCEPTQIR--HMMQLIEPQFQRDFISLLPRELALYV 296
N+ + GQ +C +R H +Q+ + R+ EL +
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-----DNELPIVT 302
Query: 297 -LTFLQPEDLLRAAQT---CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD 352
+ F LL A + C W D LL E L TL + + + L G D
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVW-----DTLL-AEMVLNLGTLQNSHEGRISCL-GLSSD 355
Query: 353 GVHVVSGSLDTSIRVW 368
G + +GS D ++++W
Sbjct: 356 GSALCTGSWDKNLKIW 371
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 46/218 (21%)
Query: 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM----------EL 391
+VPD +++GS D + +W+ +G R ++ G + SG L
Sbjct: 165 YVPD------QETRLITGSGDQTCVLWDVTTGQ-RISIFGSE-FPSGHTADVLSLSINSL 216
Query: 392 RNNILVSGNADSTVKVWDI---------VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVW 441
N+ +SG+ D+TV++WD+ G + + + F DG +GS D + R++
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 442 EAESGNLRHTLMGHQS-----------LTS-GMELRNNILVSGNADSTVKVWDIVSGQCL 489
+ +G H L + +TS + +L +G ++ VWD + + +
Sbjct: 277 DMRTG---HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Query: 490 QTLSG-RNKHQSAVTCLQFNS--RFVITSSDDGTVKLW 524
L +N H+ ++CL +S + T S D +K+W
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 25/215 (11%)
Query: 8 INWRTRPIKDPKVLKGHDDHVITC-LQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWR 66
I W + +K H V+ C +G+S C + S + + R +
Sbjct: 91 IVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM--- 147
Query: 67 TRPIKDPKVLKGHDDHVITCLQFSG--SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATL 124
P+ +VL GH + +C +R+++GS D T +W TTG+ + + GS
Sbjct: 148 --PVS--RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE---- 199
Query: 125 RVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWN--PDTEECLHAELQET 182
SG VL ++ + + +SG+ D V++W+ + E
Sbjct: 200 ----FPSGHTADVL-----SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG 250
Query: 183 EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR 217
++ + R +GSDD T +++ TG L+
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 22/165 (13%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 486
+VS S D + VW A + H + H + + G DS ++++ S
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 487 Q-------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE----FSTPL 535
+ L+G + S+ + +IT S D T LWDV TG+ F +
Sbjct: 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200
Query: 536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580
S + I S N+ I+ S D TV+LWD++
Sbjct: 201 PSGHTADVLSLSINS---------LNANMFISGSCDTTVRLWDLR 236
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---TSGMELRNNILVSGNADSTV 405
FQ DGV V+SGS D + +VW+ G+L + L H + + N ++ +AD T+
Sbjct: 112 FQ-DGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167
Query: 406 KVWD------IVSGTKKLMFR-ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458
K+W SG + R + + D H +S S D I++ + +G++ T GH+S
Sbjct: 168 KLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 459 TSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD 517
++L N +VS D TV++W +G Q ++ +V C N ++ SSD
Sbjct: 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXS-NGDIIVGSSD 286
Query: 518 D 518
+
Sbjct: 287 N 287
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM--------FRICLFDGVH 428
+TL+GHQ + ++ +++SG+ D T KVW S L ++ F
Sbjct: 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNI-LVSGNADSTVKVWDIVSG 486
++ S D +I++W+ + + T G H + + + ++ +S + D +K+ D +G
Sbjct: 158 FLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTG 215
Query: 487 QCLQTLSGRNKHQSAVTCLQ-FNSRFVITSSDDGTVKLWDVKTGEF 531
L+T G H+S V C++ + +++ +D TV++W + G
Sbjct: 216 DVLRTYEG---HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 55/248 (22%)
Query: 210 ATTGK-CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268
AT+G+ L TLIGH G V S ++ISGS D+T K W G L+ + +
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE-------GSLVYNLQA-- 140
Query: 269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA-QTCRSWRFLAEDNLLWRE 327
H + + + V++F + + L +A +T + W+ +
Sbjct: 141 --HNASVWDAK----------------VVSFSENKFLTASADKTIKLWQ---------ND 173
Query: 328 KCLEA-ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 386
K ++ + +H + H+ + D H +S S D I++ + +G++ T GH+S
Sbjct: 174 KVIKTFSGIHNDVVRHLAVV-----DDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
Query: 387 SGME-LRNNILVSGNADSTVKVWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDT 436
++ L N +VS D TV++W +G+ K + + C +G ++ GS D
Sbjct: 229 YCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNG-DIIVGSSDN 287
Query: 437 SIRVWEAE 444
+R++ E
Sbjct: 288 LVRIFSQE 295
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 128/306 (41%), Gaps = 57/306 (18%)
Query: 115 LVSGSRDATLRVWHIES---GECLHVLVGHLAAVRCVQYDGKLVVSGAYDYM---VKIWN 168
+ S SRD T+R+W + G ++ G L +V C + +L++ G D V ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV-CYDSEKELLLFGGKDTXINGVPLFA 90
Query: 169 PDTEECLHAEL--QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226
E+ L+ + Q LS + ++SGS D T KVW G + L H V
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQDGV---VISGSWDKTAKVWKE--GSLVYNLQAHNASV 145
Query: 227 WSSQMAG---NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD 283
W +++ N ++ S D+T+K W N + I + + +RH+ + + F
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDV----VRHLAVVDDGHF--- 198
Query: 284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV 343
+ L L D+LR + S+ + C++ +
Sbjct: 199 ---ISCSNDGLIKLVDXHTGDVLRTYEGHESFVY-----------CIKL----------L 234
Query: 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELRNNILVSGNAD 402
P+ +VS D ++R+W E+G+L+ + + S+ S N ++ G++D
Sbjct: 235 PN--------GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSD 286
Query: 403 STVKVW 408
+ V+++
Sbjct: 287 NLVRIF 292
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---TSGMELRNNILVSGNADSTVKVW 481
DGV V+SGS D + +VW+ G+L + L H + + N ++ +AD T+K+W
Sbjct: 114 DGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170
Query: 482 DIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
+ + ++T SG H V L + I+ S+DG +KL D TG+ +
Sbjct: 171 Q--NDKVIKTFSGI--HNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD---------V 217
Query: 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF 584
L + + + C L N +++ +D TV++W + G
Sbjct: 218 LRTYEG--HESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSL 258
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 76 LKGHDDHVITCLQFSGSRIVSGSDDNTLKVWS---------ATTG------------KCL 114
LKGHD V + S++ S S D T+++WS TG K L
Sbjct: 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKEL 73
Query: 115 LVSGSRDATLR---VWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDT 171
L+ G +D + ++ + L+ L+GH V + + +V+SG++D K+W
Sbjct: 74 LLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--- 130
Query: 172 EECLHAELQETEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKCLRTLIG 221
E L LQ + + ++ ++ S D T+K+W K ++T G
Sbjct: 131 EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG 181
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 41/207 (19%)
Query: 71 KDP-KVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVW------------SATTGKCLLVS 117
+DP L GH +V + L F ++SGS D T KVW +A+ +VS
Sbjct: 94 EDPLYTLIGHQGNVCS-LSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS 152
Query: 118 --------GSRDATLRVWH----IESGECLHV-LVGHLAAVRCVQYDGKLVVSGAYDYMV 164
S D T+++W I++ +H +V HLA V DG + S + D ++
Sbjct: 153 FSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVD----DGHFI-SCSNDGLI 207
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALR----SRIVSGSDDNTLKVWSATTGKCLRTLI 220
K+ + T + L + E S Y ++ IVS +D T+++WS G + +
Sbjct: 208 KLVDXHTGDVL----RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT 263
Query: 221 GHTGGVWSSQMAGN-IIISGSTDRTLK 246
+WS N II GS+D ++
Sbjct: 264 LPAISIWSVDCXSNGDIIVGSSDNLVR 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 14/151 (9%)
Query: 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM--ELRNNILVSGNADSTVKVWDIVSG 486
V S S D ++R+W + L + Q + + + +L+ G D+ + + +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
L HQ V L F VI+ S D T K+W K G + L
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSLV------YNLQAHNA 143
Query: 547 LIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577
++ ++ F+ +T+S D T+KLW
Sbjct: 144 SVWDAKVV----SFSENKFLTASADKTIKLW 170
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 51/242 (21%)
Query: 376 RHTLMGHQ----SLTSGMELRNN----ILVSGNADSTVKVWDIVSGTKKLMFRI---CLF 424
R L GH S+ +G + N +L+SG+ D TV +W + + F I L
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 425 DGVHVVS-------------GSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNIL 469
H VS S D ++R+W+ +G +GHQS + N +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN------------SRFVITSSD 517
+S A+ +K+W+I+ G+C + + + H V+C++++ + + +
Sbjct: 134 LSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577
DG +K+W+ ++F + + F + + + N +++ T D + +W
Sbjct: 193 DGRLKVWN-----------TNFQIR-YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 578 DV 579
D+
Sbjct: 241 DI 242
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 37/131 (28%)
Query: 75 VLKGHDDHVITCLQ-FSGSR------IVSGSDDNTLKVWS---------------ATTG- 111
+L+GH D V + + FS ++SGS D T+ +W A TG
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 112 ------------KCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVS 157
C +S S D TLR+W + +G VGH + V V + D + ++S
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 158 GAYDYMVKIWN 168
+ +K+WN
Sbjct: 136 AGAEREIKLWN 146
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 34/201 (16%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSG 413
+S S D ++R+W+ +G +GHQS + N ++S A+ +K+W+I+
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 414 TK----------------------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT 451
K K ++ F + S D ++VW + +R+T
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPF-APYFASVGWDGRLKVWNT-NFQIRYT 208
Query: 452 LMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS 509
H+S + + + N + +G D + +WDI++ L S + + FN
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN---LTYPQREFDAGSTINQIAFNP 265
Query: 510 R--FVITSSDDGTVKLWDVKT 528
+ +V +D G VK++++ T
Sbjct: 266 KLQWVAVGTDQG-VKIFNLMT 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSH-----------GYALRSR---I 196
D +++SG+ D V IW L+ E Q + H AL
Sbjct: 38 DSPVLISGSRDKTVMIWK------LYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 197 VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLKGWS 249
+S S D TL++W TG + +GH V+S + + I+S +R +K W+
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 508 NSRFVITSSDDGTVKLWDV----KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563
+S +I+ S D TV +W + + G F P + N F + C
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-------- 89
Query: 564 FVITSSDDGTVKLWDVKTG 582
F I+SS D T++LWD++TG
Sbjct: 90 FAISSSWDKTLRLWDLRTG 108
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 114 LLVSGSRDATLRVWHIESG-------ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
LL +GS D+T+ +W E + L ++ GH V+ V + DG + + + D V
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 165 KIWNPDTE----ECLHAELQETEVELSH--GYALRSRIVSGSDDNTLKVWSATTG--KCL 216
IW D EC+ LQE ++ H + + + S S D+T+++W +C+
Sbjct: 132 WIWETDESGEEYECISV-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 217 RTLIGHTGGVWSSQMAGNI----IISGSTDRTLKGW 248
L GH G VWSS + SGS D T++ W
Sbjct: 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 44/262 (16%)
Query: 356 VVSGSLDTSIRVWEAESG-------NLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVK 406
+ +GS D+++ +W E +L + GH++ G+ N+ L + + D +V
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 407 VWDIVSGTKKL----MFRICLFDGVHVV---------SGSLDTSIRVWEAESGNLR--HT 451
+W+ ++ + + D HV+ S S D ++R+W+ +
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 452 LMGHQS--LTSGMELRNNI--LVSGNADSTVKVWDIVSGQ--------CLQTLSGRNKHQ 499
L GH+ +S + + L SG+ DSTV+VW + C L +K Q
Sbjct: 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252
Query: 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559
FN + + DG + +++ GE+ F +Y ++ L+
Sbjct: 253 VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV-----FAKRALCHGVYEINVV-KWLE 305
Query: 560 FNSRFVI-TSSDDGTVKLWDVK 580
N + ++ T DDG V W ++
Sbjct: 306 LNGKTILATGGDDGIVNFWSLE 327
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 330 LEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM------GHQ 383
+ + L ++ K + ++ F F + +GS D I++ + + TL+ H+
Sbjct: 1 MASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHK 58
Query: 384 SLTSGMELR--NNILVSGNADSTVKVW---------------DIVSGTKKLMFRICLF-D 425
+ R ++L +G+ DSTV +W I+ G + + + D
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 426 GVHVVSGSLDTSIRVWEA-ESGNLRHTLMGHQSLTSGME-----LRNNILVSGNADSTVK 479
G ++ + S D S+ +WE ESG + Q + ++ +L S + D TV+
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 480 VWDIVSG--QCLQTLSGRNKHQSAVTCLQFNSRFVI----TSSDDGTVKLW 524
+W +C+ L+G H+ V F+ + + SDD TV++W
Sbjct: 179 IWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 48/246 (19%)
Query: 321 DNLLWREKCLEAATL--HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378
+NL ++ ++A L H T V + +G + S S D+S VW + +G T
Sbjct: 14 ENLYFQGSHMKAIKLTGHERPLTQVK----YNKEGDLLFSCSKDSSASVWYSLNGERLGT 69
Query: 379 LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG-----------TKKLMFRIC--- 422
L GH +++ V+G+AD ++K+WD+ +G K++ F C
Sbjct: 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNY 129
Query: 423 ---LFDGVHVVSGSLDTSIRVWEAESGNLRHTL-----------MGHQSL----TSGMEL 464
+ D V G SI ++E E + H L + H+ L +G
Sbjct: 130 FLAILDNVMKNPG----SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185
Query: 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS--RFVITSSDDGTVK 522
+ +++G+ D + +D+ + + + + H+ +++ +QF+ + ITSS D
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243
Query: 523 LWDVKT 528
L DV T
Sbjct: 244 LVDVST 249
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWNPDT 171
LL S S+D++ VW+ +GE L L GH + + D K V+G+ DY +K+W+
Sbjct: 46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105
Query: 172 EECL 175
+C+
Sbjct: 106 GQCV 109
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248
+ S S D++ VW + G+ L TL GHTG +WS + ++GS D ++K W
Sbjct: 47 LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 114 LLVSGSRDATLRVW--HIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP 169
L S S DAT +W + + EC+ L GH V+ V + G L+ + + D V +W
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 170 DTE---EC---LHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGK--CLRTLIG 221
D E EC L++ Q+ + + H + + S S D+T+K++ C TL G
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWH--PSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 222 HTGGVWSSQM--AGNIIISGSTDRTLKGW 248
H VWS +G + S S DRT++ W
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 89 FSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESG---ECLHVLVGHLAAV 145
F + G ++ V A +G LL + SRD ++ VW ++ EC+ VL H V
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153
Query: 146 RCVQY--DGKLVVSGAYDYMVKIWNPDTEE---CLHAELQETEVELSHGYALRSRIVSGS 200
+ V + +L+ S +YD VK++ + ++ C E E+ V R+ S S
Sbjct: 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213
Query: 201 DDNTLKVW 208
DD T+++W
Sbjct: 214 DDRTVRIW 221
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR--HTLMGHQSLTSGMEL--RNNILV 470
+K+ + C G ++ S S D + +W+ + TL GH++ + N+L
Sbjct: 65 RKVAWSPC---GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA 121
Query: 471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKT 528
+ + D +V VW++ + +S N H V + + + + ++S D TVKL+ +
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 529 GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS--RFVITSSDDGTVKLW 577
++ + L ++S L F+ + + + SDD TV++W
Sbjct: 182 DDW----VCCATLEGHESTVWS-------LAFDPSGQRLASCSDDRTVRIW 221
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 120/272 (44%), Gaps = 37/272 (13%)
Query: 340 KTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNI 395
+ HV ++ +F G ++S S D +++W + G+ TL+GH++ + + + R
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 396 LVSGNADSTVKVWDIVSGTKKLMF--RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
++S + D T+++W+ +GT F + DGV+ ++ + T ++ E + +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQFNSRFV 512
G T G +++G+ + V ++ S Q +Q S +++T N+ ++
Sbjct: 256 G----TYG-----KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI 306
Query: 513 ITSSDDGTVKLWDVKT-----GEF----STPLMSSFILNPFYFL-----------IYSQP 552
++G + WD+++ GEF TP+ + + F+ I S P
Sbjct: 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366
Query: 553 LLC-PHLQFNSRFVITSSDDGTVKLWDVKTGE 583
P ++F + + S+DD + V E
Sbjct: 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L+S S+D L++W ++ G L+GH A V + G+ V+S + D +++W T
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
Query: 173 ECLH 176
+H
Sbjct: 214 TTIH 217
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS 516
T+ +++R IL G + +KV D S LQ + H S +T L+F + +I+SS
Sbjct: 104 TAKLQMRRFIL--GTTEGDIKVLD--SNFNLQREIDQ-AHVSEITKLKFFPSGEALISSS 158
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL 576
D +K+W VK G NP + + + + R V+++S DGT++L
Sbjct: 159 QDMQLKIWSVKDGS-----------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Query: 577 WDVKTGEFI 585
W+ TG I
Sbjct: 208 WECGTGTTI 216
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248
++S S D LK+WS G RTLIGH V + G ++S S D T++ W
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 117/260 (45%), Gaps = 37/260 (14%)
Query: 340 KTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNI 395
+ HV ++ +F G ++S S D +++W + G+ TL+GH++ + + + R
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 396 LVSGNADSTVKVWDIVSGTKKLMF--RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
++S + D T+++W+ +GT F + DGV+ ++ + T ++ E + +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSG-QCLQTLSGRNKHQSAVTCLQFNSRFV 512
G T G +++G+ + V ++ S Q +Q S +++T N+ ++
Sbjct: 253 G----TYG-----KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI 303
Query: 513 ITSSDDGTVKLWDVKT-----GEF----STPLMSSFILNPFYFL-----------IYSQP 552
++G + WD+++ GEF TP+ + + F+ I S P
Sbjct: 304 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 363
Query: 553 LLC-PHLQFNSRFVITSSDD 571
P ++F + + S+DD
Sbjct: 364 ESERPAIEFETPTFLVSNDD 383
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 115 LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172
L+S S+D L++W ++ G L+GH A V + G+ V+S + D +++W T
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
Query: 173 ECLH 176
+H
Sbjct: 211 TTIH 214
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 459 TSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS 516
T+ +++R IL G + +KV D S LQ + H S +T L+F + +I+SS
Sbjct: 101 TAKLQMRRFIL--GTTEGDIKVLD--SNFNLQREIDQ-AHVSEITKLKFFPSGEALISSS 155
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL 576
D +K+W VK G NP + + + + R V+++S DGT++L
Sbjct: 156 QDMQLKIWSVKDGS-----------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Query: 577 WDVKTGEFI 585
W+ TG I
Sbjct: 205 WECGTGTTI 213
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248
++S S D LK+WS G RTLIGH V + G ++S S D T++ W
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 41/276 (14%)
Query: 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 391
A + K T+ + DG +V+G + +R+W ++G L + L H++ ++
Sbjct: 99 ALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW 157
Query: 392 RNNI--LVSGNADSTVKVWDIVSGTKKLMFRICLFDGV------HVVSGSLDT------- 436
+ ++S + ++ +W+++SGT F + G H GSL
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 437 ----------SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV 484
+I V++ L+GH S +E N +L+S + D T+++W
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF 544
+G G + QS V+ VI+ S DG+V+LW +K L++ I++
Sbjct: 278 NGNSQNCFYGHS--QSIVSASWVGDDKVISCSMDGSVRLWSLK----QNTLLALSIVDGV 331
Query: 545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580
P+ + + + + DG V ++D+K
Sbjct: 332 -------PIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDG-KLVVSGAYDYMVKIW 167
LL+S S D TLR+WH +G + GH ++ + G V+S + D V++W
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 315
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 196 IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAG-NIIISGSTDRTLKGWSNAERI 254
++S SDD TL++W G GH+ + S+ G + +IS S D +++ WS +
Sbjct: 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
Query: 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ 301
L ++D R I Q+ ++ + ++ +Y L L
Sbjct: 322 LLALSIVDGVPIFAGR-----ISQDGQKYAVAFMDGQVNVYDLKKLN 363
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 43/192 (22%)
Query: 78 GHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECL 135
G + +TCL +S G+ IV+G ++ L++W+ T G L
Sbjct: 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT----------------------GALL 142
Query: 136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECL-HAELQET-----EVELS 187
+VL H A + V++ DG ++S + + +WN + + H EL+ET E
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 188 HGYALRSRIVSGSDDN---------TLKVWSATTGKCLRTLIGHTG--GVWSSQMAGNII 236
G V DD+ + V+ T LIGH G V ++
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 237 ISGSTDRTLKGW 248
+S S D TL+ W
Sbjct: 263 LSASDDGTLRIW 274
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRN-NILVSGNADSTVKVWDI 483
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
+ L+ ++ H + V L +NS + + S G + DV+ E +S
Sbjct: 188 QQQKRLRNMT---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 239
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+SQ + + R + + +D V +W GE
Sbjct: 240 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR-NNILVSGNADSTVKVWDI 410
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH-----------TLMGHQSLT 459
++ R V S S ++ I + SG++ H TL GH
Sbjct: 188 ---QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 460 SGMELRNN--ILVSGNADSTVKVWDIVSGQ----CLQTLSGRNKHQSAVTCL-----QFN 508
G+ + L SG D+ V VW G+ LQT + +HQ AV + Q N
Sbjct: 245 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVAWCPWQSN 301
Query: 509 SRFVITSSDDGTVKLWDVKTG 529
+ D +++W+V +G
Sbjct: 302 VLATGGGTSDRHIRIWNVCSG 322
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI- 410
+G ++ G+ +++W+ + + H + + + IL SG+ + D+
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 228
Query: 411 -----VSGTKKLMFRICLF----DGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQS 457
V+ +C DG H+ SG D + VW + G T HQ
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 458 LTSGM---ELRNNILVSGN--ADSTVKVWDIVSGQCLQTLSGRNK 497
+ ++N+L +G +D +++W++ SG CL + ++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 333
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 80 DDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-----------------------LV 116
+D+ + + +S +++ + DN++ +WSA++G L L
Sbjct: 115 NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 174
Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLH 176
G+ A +++W ++ + L + H A V + ++ ++ SG+ + + E
Sbjct: 175 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 234
Query: 177 AELQETEVELSH-GYALRSR-IVSGSDDNTLKVWSATTGK----CLRTLIGHTGGV---- 226
A L E+ +A R + SG +DN + VW + G+ L+T H G V
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 227 ---WSSQMAGNIIIS--GSTDRTLKGWS 249
W S N++ + G++DR ++ W+
Sbjct: 295 WCPWQS----NVLATGGGTSDRHIRIWN 318
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 71/206 (34%)
Query: 75 VLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLV---------------- 116
L GH V L+++ G + SG +DN + VW + G+ V
Sbjct: 236 TLSGHSQEVCG-LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 117 ------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMV 164
G+ D +R+W++ SG CL + H
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI----------------- 337
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG 224
+W+P +E + HG+A N L +W T + L GHT
Sbjct: 338 -LWSPHYKELISG----------HGFA----------QNQLVIWKYPTMAKVAELKGHTS 376
Query: 225 GVWSSQMA--GNIIISGSTDRTLKGW 248
V S M+ G + S + D TL+ W
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLW 402
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 359 GSLDTSIRVWEAESGNLRHTLMGH------------QSLTSGMELRNNILVSGNADSTVK 406
G+ D IR+W SG + H + L SG N LV + K
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 367
Query: 407 VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441
V ++ T +++ DG V S + D ++R+W
Sbjct: 368 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRN-NILVSGNADSTVKVWDI 483
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
+ L+ ++ H + V L +NS + + S G + DV+ E +S
Sbjct: 177 QQQKRLRNMT---SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 228
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+SQ + + R + + +D V +W GE
Sbjct: 229 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR-NNILVSGNADSTVKVWDI 410
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH-----------TLMGHQSLT 459
++ R V S S ++ I + SG++ H TL GH
Sbjct: 177 ---QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233
Query: 460 SGMELRNN--ILVSGNADSTVKVWDIVSGQ----CLQTLSGRNKHQSAVTCL-----QFN 508
G+ + L SG D+ V VW G+ LQT + +HQ AV + Q N
Sbjct: 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVAWCPWQSN 290
Query: 509 SRFVITSSDDGTVKLWDVKTG 529
+ D +++W+V +G
Sbjct: 291 VLATGGGTSDRHIRIWNVCSG 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI- 410
+G ++ G+ +++W+ + + H + + + IL SG+ + D+
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 217
Query: 411 -----VSGTKKLMFRICLF----DGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQS 457
V+ +C DG H+ SG D + VW + G T HQ
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 458 LTSGM---ELRNNILVSGN--ADSTVKVWDIVSGQCLQTLSGRNK 497
+ ++N+L +G +D +++W++ SG CL + ++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 322
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 80 DDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-----------------------LV 116
+D+ + + +S +++ + DN++ +WSA++G L L
Sbjct: 104 NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 163
Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLH 176
G+ A +++W ++ + L + H A V + ++ ++ SG+ + + E
Sbjct: 164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 223
Query: 177 AELQETEVELSH-GYALRSR-IVSGSDDNTLKVWSATTGK----CLRTLIGHTGGV---- 226
A L E+ +A R + SG +DN + VW + G+ L+T H G V
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 227 ---WSSQMAGNIIIS--GSTDRTLKGWS 249
W S N++ + G++DR ++ W+
Sbjct: 284 WCPWQS----NVLATGGGTSDRHIRIWN 307
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 71/206 (34%)
Query: 75 VLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLV---------------- 116
L GH V L+++ G + SG +DN + VW + G+ V
Sbjct: 225 TLSGHSQEVCG-LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 117 ------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMV 164
G+ D +R+W++ SG CL + H
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI----------------- 326
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG 224
+W+P +E + HG+A N L +W T + L GHT
Sbjct: 327 -LWSPHYKELISG----------HGFA----------QNQLVIWKYPTMAKVAELKGHTS 365
Query: 225 GVWSSQMA--GNIIISGSTDRTLKGW 248
V S M+ G + S + D TL+ W
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLW 391
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 359 GSLDTSIRVWEAESGNLRHTLMGH------------QSLTSGMELRNNILVSGNADSTVK 406
G+ D IR+W SG + H + L SG N LV + K
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356
Query: 407 VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441
V ++ T +++ DG V S + D ++R+W
Sbjct: 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR-NNILVSGNADSTVKVWDI 483
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP 543
Q + L H + V L +NS + + S G + DV+ E +S
Sbjct: 97 ---QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 148
Query: 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583
+SQ + + R + + +D V +W GE
Sbjct: 149 -----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR-NNILVSGNADSTVKVWDI 410
+V++ +LD S+ +W A SG++ L Q ++S ++ N L G + + V++WD+
Sbjct: 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH-----------TLMGHQSLT 459
++ R V S S ++ I + SG++ H TL GH
Sbjct: 97 ---QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153
Query: 460 SGMELRNN--ILVSGNADSTVKVWDIVSGQ----CLQTLSGRNKHQSAVTCLQFNSRFVI 513
G+ + L SG D+ V VW G+ LQT + AV + S +
Sbjct: 154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213
Query: 514 T--SSDDGTVKLWDVKTG 529
T + D +++W+V +G
Sbjct: 214 TGGGTSDRHIRIWNVCSG 231
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI- 410
+G ++ G+ +++W+ + + H + + + IL SG+ + D+
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 137
Query: 411 -----VSGTKKLMFRICLF----DGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQS 457
V+ +C DG H+ SG D + VW + G T HQ
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 458 LTSGM---ELRNNILVSGN--ADSTVKVWDIVSGQCLQTLSGRNK 497
+ ++N+L +G +D +++W++ SG CL + ++
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 80 DDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-----------------------LV 116
+D+ + + +S +++ + DN++ +WSA++G L L
Sbjct: 24 NDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83
Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLH 176
G+ A +++W ++ + L + H A V + ++ ++ SG+ + + E
Sbjct: 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV 143
Query: 177 AELQETEVELSH-GYALRSR-IVSGSDDNTLKVWSATTGK----CLRTLIGHTGGV---- 226
A L E+ +A R + SG +DN + VW + G+ L+T H G V
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 227 WSSQMAGNIIISGST-DRTLKGWS 249
W + + G T DR ++ W+
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWN 227
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 71/205 (34%), Gaps = 71/205 (34%)
Query: 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLV----------------- 116
L GH V L+++ G + SG +DN + VW + G+ V
Sbjct: 146 LSGHSQEVCG-LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 117 -----------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVK 165
G+ D +R+W++ SG CL + H
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 246
Query: 166 IWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225
+W+P +E + HG+A N L +W T + L GHT
Sbjct: 247 LWSPHYKELISG----------HGFA----------QNQLVIWKYPTMAKVAELKGHTSR 286
Query: 226 VWSSQMA--GNIIISGSTDRTLKGW 248
V S M+ G + S + D TL+ W
Sbjct: 287 VLSLTMSPDGATVASAAADETLRLW 311
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 359 GSLDTSIRVWEAESGNLRHTLMGH------------QSLTSGMELRNNILVSGNADSTVK 406
G+ D IR+W SG + H + L SG N LV + K
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276
Query: 407 VWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441
V ++ T +++ DG V S + D ++R+W
Sbjct: 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/250 (18%), Positives = 96/250 (38%), Gaps = 24/250 (9%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 411
DG + G + + +++ ES T+ GHQ+ + ++L SG+ + D+
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204
Query: 412 SGTKKL------MFRICLF----DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 461
++ +C DG+ + SG D +++W+A S + T H +
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 462 M---ELRNNILVSGNA--DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS 516
+ ++N+L +G D + W+ +G + T+ ++ S +
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL 576
D + +W SS + + +L L + R + T++ D +K
Sbjct: 325 PDNNLSIWSYS---------SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 577 WDVKTGEFIR 586
W V G+ ++
Sbjct: 376 WRVYDGDHVK 385
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 35/204 (17%)
Query: 80 DDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDAT---------------- 123
DD+ + L +S +V+ + + + VW+A +G ++ + ++T
Sbjct: 92 DDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSV 151
Query: 124 ------LRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHA 177
+ ++ +ES L + GH A V C+ ++ ++ SG+ + +
Sbjct: 152 GLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG 211
Query: 178 ELQETEVELSHGYALRS---RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV-------W 227
LQ E+ G A RS ++ SG +DN +++W A + T H V W
Sbjct: 212 TLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 228 SSQMAGNIIISGSTDRTLKGWSNA 251
S + G+ D+ + W+ A
Sbjct: 271 QSNLLA--TGGGTMDKQIHFWNAA 292
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 417 LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR------NNILV 470
L F G +++GS +R WE + T+ Q + +G L + +
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 471 SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDV 526
+ + D T K+WD+ S Q +Q +H + V + + N V+T S D T+K WD
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 527 KTGEFSTPLM 536
++ S P+M
Sbjct: 159 RS---SNPMM 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 25/158 (15%)
Query: 69 PIKDPKVLKGHDDHVITCLQFS-----GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDAT 123
P+KD +V DD I CL FS G+ +++GS N ++ W V S
Sbjct: 28 PMKDIEVTSSPDDS-IGCLSFSPPTLPGNFLIAGSWANDVRCWE--------VQDSGQTI 78
Query: 124 LRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETE 183
+ + +G L V C DG V + + D K+W+ + + + +
Sbjct: 79 PKAQQMHTGPVLDV---------CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP 129
Query: 184 VELSH--GYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219
V+ H S +++GS D TLK W + + L
Sbjct: 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDP 73
P+KD +V DD I CL FS + P I S W R E+ + I P
Sbjct: 28 PMKDIEVTSSPDDS-IGCLSFSPPTLPGNFLIAGS--WANDV---RCWEVQDSGQTI--P 79
Query: 74 KVLKGHDDHVI-TCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESG 132
K + H V+ C GS++ + S D T K+W ++ + + ++ DA ++ H
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHW--- 135
Query: 133 ECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWN 168
++ Y V++G++D +K W+
Sbjct: 136 ------------IKAPNY--SCVMTGSWDKTLKFWD 157
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 464 LRNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVK 522
L N L++G+ + V+ W++ SGQ + + C + V T+S D T K
Sbjct: 52 LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 523 LWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH--LQFNSRFVITSSDDGTVKLWDVK 580
+WD+ + + + P+ H N V+T S D T+K WD +
Sbjct: 112 MWDLSSNQ------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 581 T 581
+
Sbjct: 160 S 160
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV----WSSQMAGNIIISGSTDRTLKGW- 248
S++ + S D T K+W ++ + ++ + H V W + +++GS D+TLK W
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 249 SNAERILAIGQLIDSCEPTQIRHMMQLI 276
+ + + + QL + C + + M ++
Sbjct: 158 TRSSNPMMVLQLPERCYCADVIYPMAVV 185
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 44/208 (21%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVWDIVS 412
V G+ +++ + +SG+ H L GH+ S + IL + +ADS VK+WD+
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 413 GTKKLMF------------------------RICLF-DGVHVVSGSLDTSIRVWEAESGN 447
+ L+ +C DG+H+++ D +R+W + +G
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG- 277
Query: 448 LRHTLMGHQSLTSGMELRNNILVSGNAD---------STVKVWDIVSGQCLQTLSGRNKH 498
+TL+ + + + + VS ST+ V+ + SG+ + L G H
Sbjct: 278 -ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG---H 333
Query: 499 QSAVTCLQFNSRF--VITSSDDGTVKLW 524
V C F S F + + S D + W
Sbjct: 334 YKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 41/171 (23%)
Query: 395 ILVSGNADSTVKVWDIVSGTKKLMFRI----------------CLFDGVHVVSGSLDTSI 438
+ S + D T+KVWD + +F CL V G+ +
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL-----VAVGTRGPKV 168
Query: 439 RVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVWDI--VSGQCLQTLS 493
++ + +SG+ H L GH+ S + IL + +ADS VK+WD+ SG CL TL
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-CLITLD 227
Query: 494 GRNKHQSAVT--------------CLQFNSRFVITSSDDGTVKLWDVKTGE 530
N +S C + ++T D ++LW+ GE
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 28/102 (27%)
Query: 94 IVSGSDDNTLKVWSA-----------------------TTGKCLLVSGSRDATLRVWHIE 130
S S D TLKVW +T CL+ G+R +++ ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 131 SGECLHVLVGHLAAVRCV----QYDGKLVVSGAYDYMVKIWN 168
SG C H+L GH + V +YD L + A D VK+W+
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASA-DSRVKLWD 215
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 28/116 (24%)
Query: 86 CLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSR------------------------- 120
C G +++ DN +++W+++ G+ LV+ +
Sbjct: 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP 311
Query: 121 -DATLRVWHIESGECLHVLVGHLAAVRCVQYDGKL--VVSGAYDYMVKIWNPDTEE 173
+T+ V+ + SGE + +L GH V C + + SG+ D + W P E
Sbjct: 312 YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 326 REKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385
+ + +E+A N K + F DG+H+++ D +R+W + +G +TL+ + +
Sbjct: 233 KSQAVESANTAHNGKV---NGLCFTSDGLHLLTVGTDNRMRLWNSSNG--ENTLVNYGKV 287
Query: 386 TSGMELRNNILVSGNAD---------STVKVWDIVSGTKKLMFR-------ICLFDG--V 427
+ + VS ST+ V+ + SG + M + C+F
Sbjct: 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ 347
Query: 428 HVVSGSLDTSIRVW 441
+ SGS D +I W
Sbjct: 348 ELYSGSRDCNILAW 361
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
L GHQ G+ +N+ L+S + D TV +WDI +G K K++ +F G
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
H++ SL D + +W+ S H + H + + + IL +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 473 NADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV-KTGE 530
+AD TV +WD+ + + L T V N + +S D + +WD+ K GE
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 424 FDGVHVVSGSLDTSIRV-WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD 482
F G V+G ++ I++ E E R+ +I+ + S V V+D
Sbjct: 107 FGGFGSVTGKIECEIKINHEGEVNRARYXPQ-----------NPHIIATKTPSSDVLVFD 155
Query: 483 IV--------SGQCLQTLSGRNKHQSAVTCLQFNSRF---VITSSDDGTVKLWDVKTGEF 531
SG+C L R HQ L +NS ++++SDD TV LWD+ G
Sbjct: 156 YTKHPAKPDPSGECNPDLRLRG-HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG-- 212
Query: 532 STPLMSSFILNPFYFLIYSQPL--LCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
P + F +S + + HL S F + +DD + +WD ++
Sbjct: 213 --PKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG-SVADDQKLXIWDTRSN 262
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
L GHQ G+ +N+ L+S + D TV +WDI +G K K++ +F G
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
H++ SL D + +W+ S H + H + + + IL +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 473 NADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV-KTGE 530
+AD TV +WD+ + + L T V N + +S D + +WD+ K GE
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 424 FDGVHVVSGSLDTSIRV-WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWD 482
F G V+G ++ I++ E E R+ M +I+ + S V V+D
Sbjct: 107 FGGFGSVTGKIECEIKINHEGEVNRARY-----------MPQNPHIIATKTPSSDVLVFD 155
Query: 483 IV--------SGQCLQTLSGRNKHQSAVTCLQFNSRF---VITSSDDGTVKLWDVKTGEF 531
SG+C L R HQ L +NS ++++SDD TV LWD+ G
Sbjct: 156 YTKHPAKPDPSGECNPDLRLRG-HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPK 214
Query: 532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582
++ + + + + + HL S F + +DD + +WD ++
Sbjct: 215 EGKIVDAKAIFTGHSAVVED--VAWHLLHESLFG-SVADDQKLMIWDTRSN 262
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 32/186 (17%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTK--KLMFRICLFDGV------ 427
L GHQ G+ N+ L+S + D T+ +WDI + K K++ +F G
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 428 ---HVVSGSL------DTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNN---ILVSG 472
H++ SL D + +W+ S N H++ H + + + IL +G
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDV-KT 528
+AD TV +WD+ + + L H+ + +Q+ N + +S D + +WD+ K
Sbjct: 293 SADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 529 GEFSTP 534
GE +P
Sbjct: 351 GEEQSP 356
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
L GHQ G+ N+ L+S + D T+ +WDI + K+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 222
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
RV +A ++ GH ++ + L ++ S D + +WD + +
Sbjct: 223 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 274
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
+ H + V CL FN S F++ T S D TV LWD++ + S F
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 329
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
Q PH N + +S D + +WD+ K GE
Sbjct: 330 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 360
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNSR---FVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
SG+C L R HQ L +N +++++SDD T+ LWD+ +TP I
Sbjct: 172 SGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN----ATPKEHRVID 226
Query: 542 NPFYFLIYSQPL--LCPHLQFNSRFVITSSDDGTVKLWDVKT 581
F ++ + + HL S F + +DD + +WD +
Sbjct: 227 AKNIFTGHTAVVEDVAWHLLHESLFG-SVADDQKLMIWDTRN 267
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
L GHQ G+ N+ L+S + D T+ +WDI + K+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 218
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
RV +A ++ GH ++ + L ++ S D + +WD + +
Sbjct: 219 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
+ H + V CL FN S F++ T S D TV LWD++ + S F
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 325
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
Q PH N + +S D + +WD+ K GE
Sbjct: 326 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 356
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 45/215 (20%)
Query: 379 LMGHQSLTSGMELRNNI---LVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435
L GHQ G+ N+ L+S + D T+ +WDI + K+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------ 220
Query: 436 TSIRVWEAESGNLRHTLMGHQSLTSGME---LRNNILVSGNADSTVKVWDIVSGQCLQTL 492
RV +A ++ GH ++ + L ++ S D + +WD + +
Sbjct: 221 ---RVIDA-----KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 272
Query: 493 SGRNKHQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549
+ H + V CL FN S F++ T S D TV LWD++ + S F
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----- 327
Query: 550 SQPLLCPHLQFNSRFVITSSDDGTVKLWDV-KTGE 583
Q PH N + +S D + +WD+ K GE
Sbjct: 328 -QVQWSPH---NETILASSGTDRRLHVWDLSKIGE 358
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 396 LVSGNADSTVKVWDIVSGTKKLMFRI------CLF-----DGVHVVSGSLDTSIRVWEAE 444
L+ G ST+ +WD+ + T ++ + C D S D +I VW+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 445 SGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSGQCLQ 490
+ L GH S +++ N+ L +G D+TV+ WD+ G+ LQ
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 362 DTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSG------ 413
D +I VW+ + L GH S +++ N+ L +G D+TV+ WD+ G
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 414 --TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL 469
T ++ G + G +++ V + ++ L H+S ++
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWF 280
Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQFNSRFVITSSDDGTVKLWDV 526
VS D+ + W G ++ + S ++C + + ++++T S D +++V
Sbjct: 281 VSTGKDNLLNAWRTPYG---ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 23/145 (15%)
Query: 405 VKVWDIV-SGTKKLM-----------FRIC--LFDGVHVVSGSLDTSIRVWE--AESGNL 448
VKVWDI G K + R C L DG ++ G +++ +W+ A + +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 449 RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506
+ L + + + + S +D + VWD+ + ++ G H +C+
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCID 190
Query: 507 F--NSRFVITSSDDGTVKLWDVKTG 529
+ + T D TV+ WD++ G
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREG 215
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 352 DGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI 410
DG + +G LD ++R W+ G L+ Q + G L G S V+V +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 411 VSGTK-----------KLMFRICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSL 458
K L F C G VS D + W G ++ + L
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYC---GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 459 TSGMELRNNILVSGNADSTVKVWDIV 484
+ + + + +V+G+ D V++++
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVYEVI 336
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 32/142 (22%)
Query: 393 NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL 452
+N++ SG+ D TV VW+I G L R + TL
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVI--------------------------TL 127
Query: 453 MGHQ---SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-- 507
GH + + N+L+S D+ + VWD+ +G + TL G + H + + +
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSR 186
Query: 508 NSRFVITSSDDGTVKLWDVKTG 529
+ + TS D V++ + + G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKG 208
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 356 VVSGSLDTSIRVWEAESGN----LRH---TLMGHQ---SLTSGMELRNNILVSGNADSTV 405
+ SGS D ++ VWE G LR TL GH + + N+L+S D+ +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 406 KVWDIVSGTKKLMFRICLF-----------DGVHVVSGSLDTSIRVWEAESGNL 448
VWD+ +G L + DG + + D +RV E G +
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 32/142 (22%)
Query: 393 NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL 452
+N++ SG+ D TV VW+I G L R + TL
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVI--------------------------TL 127
Query: 453 MGHQ---SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-- 507
GH + + N+L+S D+ + VWD+ +G + TL G + H + + +
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL-GPDVHPDTIYSVDWSR 186
Query: 508 NSRFVITSSDDGTVKLWDVKTG 529
+ + TS D V++ + + G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKG 208
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 356 VVSGSLDTSIRVWEAESGN----LRH---TLMGHQ---SLTSGMELRNNILVSGNADSTV 405
+ SGS D ++ VWE G LR TL GH + + N+L+S D+ +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 406 KVWDIVSGTKKLMFRICLF-----------DGVHVVSGSLDTSIRVWEAESGNL 448
VWD+ +G L + DG + + D +RV E G +
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-----DGKLVVSGAY 160
+S +G+ ++ GS D + + +SGE L + V+ + D + +
Sbjct: 214 FSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 161 DYMVKIWNPDTEECLHA----ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL 216
D +++W+ T +C+ + Q ++ RI+S S D TL + + L
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332
Query: 217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNA 251
+T+ GH G+ + + N +ISGS D + WS++
Sbjct: 333 KTISGHNKGI--TALTVNPLISGSYDGRIMEWSSS 365
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 143/374 (38%), Gaps = 95/374 (25%)
Query: 100 DNTLKVWSATTGKCL------------------------LVSGSRDATLRVWHIESGECL 135
D T++VW TT KC+ ++S S D TL + + E L
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332
Query: 136 HVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSR 195
+ GH + + + ++SG+YD + W + +H + V L + A
Sbjct: 333 KTISGHNKGITALTVN--PLISGSYDGRIMEW---SSSSMHQDHSNLIVSLDNSKAQEYS 387
Query: 196 IVSGSDDNTLKVWSATT---GKCLRTLIGHTGGVWS-----------SQMAGNIIISGST 241
+S D+TLKV T G + + G + G+II S
Sbjct: 388 SISW--DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 445
Query: 242 DRTLKGWSNAERILAI----GQLIDSCEPTQIRHMMQLIEP-QFQRDFISLLPRELALYV 296
+ S ++ +A+ G I + + + L P + + +IS+ P E
Sbjct: 446 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE----- 500
Query: 297 LTFLQPEDLL----------RAAQTCRSWRFLAE--DNLLWREKCLEAATLHRNKKTHVP 344
T++ D++ R +T R W F + + W+ A N++
Sbjct: 501 -TYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWK-----PAEKGANEEEIEE 553
Query: 345 DLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI-------LV 397
DL V +GSLDT+I ++ +++ + ++L + + NN+ LV
Sbjct: 554 DL---------VATGSLDTNIFIY-----SVKRPMKIIKALNAHKDGVNNLLWETPSTLV 599
Query: 398 SGNADSTVKVWDIV 411
S AD+ +K W++V
Sbjct: 600 SSGADACIKRWNVV 613
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGN------LRHTLMGHQSLTSGMELRNNILVS 471
+F + D + D +IRVW+ + L +G+Q + + N ++S
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV-VATGNGRIIS 314
Query: 472 GNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW 524
+ D T+ +++ + L+T+SG NK +T L N +I+ S DG + W
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNK---GITALTVNP--LISGSYDGRIMEW 362
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 426 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME-----LRNNILVSGNADSTVKV 480
G V++ D I ++ +SG + Q G L + + AD+T++V
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 278
Query: 481 WDIVSGQCLQ--TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV 526
WD+ + +C+Q TL + V + + +I+ S DGT+ +++
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
WD SG L +SG ++ +A Q +T DDG+V + +FS +
Sbjct: 147 WD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK 204
Query: 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
F + P + FVIT D + +D K+GEF++
Sbjct: 205 QGSFVRDVEFSPD-------SGEFVITVGSDRKISCFDGKSGEFLK 243
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
++ LP ++ LY+L+FL P DL + T W D +LWR
Sbjct: 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR 46
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-----DGKLVVSGAY 160
+S +G+ ++ GS D + + +SGE L + V+ + D + +
Sbjct: 214 FSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 161 DYMVKIWNPDTEECLHA----ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL 216
D +++W+ T +C+ + Q ++ RI+S S D TL + + L
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332
Query: 217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGW 248
+T+ GH G+ + + N +ISGS D + W
Sbjct: 333 KTISGHNKGI--TALTVNPLISGSYDGRIXEW 362
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 139/369 (37%), Gaps = 85/369 (23%)
Query: 100 DNTLKVWSATTGKCL------------------------LVSGSRDATLRVWHIESGECL 135
D T++VW TT KC+ ++S S D TL + + E L
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL 332
Query: 136 HVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSR 195
+ GH + + + ++SG+YD + W+ + H+ L V L + A
Sbjct: 333 KTISGHNKGITALTVN--PLISGSYDGRIXEWSSSSXHQDHSNLI---VSLDNSKAQEYS 387
Query: 196 IVSGSDDNTLKVWSATT---GKCLRTLIGHTGGVWS-----------SQMAGNIIISGST 241
+S D+TLKV T G + + G + G+II S
Sbjct: 388 SISW--DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 445
Query: 242 DRTLKGWSNAERILAI----GQLIDSCEPTQIRHMMQLIEP-QFQRDFISLLPRELALYV 296
+ S ++ +A+ G I + + + L P + + +IS+ P E
Sbjct: 446 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE----- 500
Query: 297 LTFLQPEDLL----------RAAQTCRSWRFLAE--DNLLWREKCLEAATLHRNKKTHVP 344
T++ D+ R +T R W F + + W+ A N++
Sbjct: 501 -TYIAAGDVXGKILLYDLQSREVKTSR-WAFRTSKINAISWK-----PAEKGANEEEIEE 553
Query: 345 DLFGFQFDGVHVVSGSLDTSIRVWEAE-SGNLRHTLMGHQSLTSGMELRN-NILVSGNAD 402
DL V +GSLDT+I ++ + + L H+ + + + LVS AD
Sbjct: 554 DL---------VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGAD 604
Query: 403 STVKVWDIV 411
+ +K W++V
Sbjct: 605 ACIKRWNVV 613
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGN------LRHTLMGHQSLTSGMELRNNILVS 471
+F + D + D +IRVW+ + L +G+Q + + N ++S
Sbjct: 256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV-VATGNGRIIS 314
Query: 472 GNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW 524
+ D T+ +++ + L+T+SG NK +T L N +I+ S DG + W
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNK---GITALTVNP--LISGSYDGRIXEW 362
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 426 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME-----LRNNILVSGNADSTVKV 480
G V++ D I ++ +SG + Q G L + + AD+T++V
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 278
Query: 481 WDIVSGQCLQ--TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDV 526
WD+ + +C+Q TL + V + + +I+ S DGT+ +++
Sbjct: 279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540
WD SG L +SG ++ +A Q T DDG+V + +FS +
Sbjct: 147 WD--SGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHK 204
Query: 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIR 586
F + P + FVIT D + +D K+GEF++
Sbjct: 205 QGSFVRDVEFSPD-------SGEFVITVGSDRKISCFDGKSGEFLK 243
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR---FVITSSDDGTVKLWDV 526
VSG+ D +KVWD+ LS H + VTC+ + ++ S+D + LWD
Sbjct: 143 VSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
+ + ++ + S P Y L H Q + FV ++GTV L D K+
Sbjct: 200 RCPKPASQIGCS---APGYLPTS----LAWHPQQSEVFVF-GDENGTVSLVDTKS 246
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 35/217 (16%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD-------------GVHVVSGSLDTSI 438
ILV+ ++ + V++W++ ++ + C ++ G VSGS D I
Sbjct: 93 ERGILVASDSGA-VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 439 RVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLS-- 493
+VW+ + + H + + ++++ +S + D+ + +WD +C + S
Sbjct: 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT---RCPKPASQI 208
Query: 494 GRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550
G + T L ++ S + ++GTV L D K+ S L S+ L++S
Sbjct: 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAVHSQCVTGLVFS 266
Query: 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587
PH + F+ + S+D ++ + D E R+
Sbjct: 267 -----PH---SVPFLASLSEDCSLAVLDSSLSELFRS 295
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 33/227 (14%)
Query: 377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG---------- 426
+T HQ+ + SG+ V++WD T L I +F G
Sbjct: 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114
Query: 427 ---VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSGNADSTVKV 480
+ V + V+ ++G L G + ++ + + ++SG+ D+TV +
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWD----VKTGEFSTP 534
++ G + S +H V +++N ++ DGT+ L++ KTG F
Sbjct: 175 FE---GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231
Query: 535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
+ + + F + P + + ++S D T+K+W+V T
Sbjct: 232 SLKNVAHSGSVFGLTWSP--------DGTKIASASADKTIKIWNVAT 270
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 88/454 (19%), Positives = 161/454 (35%), Gaps = 69/454 (15%)
Query: 93 RIVSGSDDNTLKVWSATTGK---------------------CLLVSGSRDATLRVWHIES 131
RI+SGSDDNT+ ++ K L S D T+ +++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 132 GECLHVL-------VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET 182
G V V H +V + + DG + S + D +KIWN T + T
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 183 EVELSHGYAL--RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV--WSSQMAGNIIIS 238
+E + + +VS S + + + G + GH + SS G + S
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341
Query: 239 GSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT 298
+ + W ++ G + + P M+ I+ + D ++ + V
Sbjct: 342 ADAEGHINSWD-----ISTG-ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395
Query: 299 FLQPEDLLRAAQTCRSWRFL----AEDNLLWREKCLEAATLHRNKK-THVPDLF-----G 348
D +A S + L + D + C + ++ + K T VP +
Sbjct: 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 455
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNN--ILVSGNADSTV 405
D V G D+ + V++ ++ + H + + + NN LV+ + V
Sbjct: 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 406 KVWDIVSG-----TKKLMFRICLF-------DGVHVVSGSLDTSIRVWEAESGNLRHTLM 453
+ + + T F D V + +GSLD S+ VW + ++
Sbjct: 516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575
Query: 454 ----GHQSLTSGMELRNNILVSGNADSTVKVWDI 483
S+ S + L +VS DS +K W++
Sbjct: 576 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG 413
++SGS D ++ ++E + T H + ++ S D T+ +++ V G
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 414 TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVS 471
TK +F D S++ N+ H+ + G G ++ S
Sbjct: 223 TKTGVFE--------------DDSLK-------NVAHSGSVFGLTWSPDGTKI-----AS 256
Query: 472 GNADSTVKVWDIVSGQCLQTL 492
+AD T+K+W++ + + +T+
Sbjct: 257 ASADKTIKIWNVATLKVEKTI 277
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 470 VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDV 526
VSG D +VKVWD+ L++ N H S V C+ ++ +DG + LWD
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
Query: 527 KTGEFST 533
+ + +T
Sbjct: 212 RKPKPAT 218
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 31/182 (17%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELRNNILVSGNADSTVKVW 408
DG VSG D S++VW+ + + H S + ++ I +S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 409 DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNI 468
D C D ++ TS+ W E +++
Sbjct: 210 DTRKPKPATRIDFCASD-------TIPTSV-TWHPE--------------------KDDT 241
Query: 469 LVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528
G+ V + +I + QT + +++ + + +S F+ + S+D TV + D
Sbjct: 242 FACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301
Query: 529 GE 530
E
Sbjct: 302 SE 303
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 114 LLVSGSRDATLRVWHIESGECLHV---LVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWN 168
LL+S S+D LR+W+I++ + + + GH V YD G+ ++S D+ +K+W
Sbjct: 166 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 225
Query: 169 PDTEECLHA 177
+++ ++A
Sbjct: 226 INSKRMMNA 234
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLW 524
N+L+S + D +++W+I + + G H+ V ++ +++ D ++KLW
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Query: 525 DVKTGEFSTPLMSSFILNP 543
+ + + S+ NP
Sbjct: 225 RINSKRMMNAIKESYDYNP 243
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 114 LLVSGSRDATLRVWHIESGECLHV---LVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWN 168
LL+S S+D LR+W+I++ + + + GH V YD G+ ++S D+ +K+W
Sbjct: 125 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 184
Query: 169 PDTEECLHA 177
+++ ++A
Sbjct: 185 INSKRMMNA 193
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLW 524
N+L+S + D +++W+I + + G H+ V ++ +++ D ++KLW
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Query: 525 DVKTGEFSTPLMSSFILNP 543
+ + + S+ NP
Sbjct: 184 RINSKRMMNAIKESYDYNP 202
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 114 LLVSGSRDATLRVWHIESGECLHV---LVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWN 168
LL+S S+D LR+W+I++ + + + GH V YD G+ ++S D+ +K+W
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 169 PDTEECLHA 177
+++ ++A
Sbjct: 189 INSKRMMNA 197
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLW 524
N+L+S + D +++W+I + + G H+ V ++ +++ D ++KLW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 525 DVKTGEFSTPLMSSFILNP 543
+ + + S+ NP
Sbjct: 188 RINSKRMMNAIKESYDYNP 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 114 LLVSGSRDATLRVWHIESGECLHVL---VGHLAAVRCVQYD--GKLVVSGAYDYMVKIWN 168
LL+S S+D LR+W+I++ + + GH V YD G+ ++S D+ +K+W
Sbjct: 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Query: 169 PDTEECLHA 177
+++ ++A
Sbjct: 190 INSKRMMNA 198
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLW 524
N+L+S + D +++W+I + + G H+ V ++ +++ D ++KLW
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Query: 525 DVKTGEFSTPLMSSFILNP 543
+ + + S+ NP
Sbjct: 189 RINSKRMMNAIKESYDYNP 207
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 114 LLVSGSRDATLRVWHIESGECLHV---LVGHLAAVRCVQYD--GKLVVSGAYDYMVKIWN 168
LL+S S+D LR+W+I++ + + + GH V YD G+ ++S D+ +K+W
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 169 PDTEECLHA 177
+++ ++A
Sbjct: 189 INSKRMMNA 197
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 467 NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLW 524
N+L+S + D +++W+I + + G H+ V ++ +++ D ++KLW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 525 DVKTGEFSTPLMSSFILNP 543
+ + + S+ NP
Sbjct: 188 RINSKRMMNAIKESYDYNP 206
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLF 347
LP EL L + + L +LL+ + C+ W LA D LW+ L LH PD+
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-------PDVT 64
Query: 348 G 348
G
Sbjct: 65 G 65
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 428 HVVSGSLDTSIRVWEAESGNLR-HTLMGHQSLTSGMELRNNI--------LVSGNADSTV 478
++ +G ++ +W E+ + +++ GH+ + + ++ + +V+G+ D TV
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 479 KVWDIVSGQ----CLQTLSGRNKHQSAVTCL--QFN--SRFVITSSDDGTVKLWDVKT 528
KVWD ++ + G NK +N R V D+G +KL+D++
Sbjct: 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 115 LVSGSRDATLRVWHIESGEC-LHVLVGHLAAVRCVQYD--------GKLVVSGAYDYMVK 165
L +G L +W++E+ E ++ + GH + + +V+G+ D VK
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 166 IWNPDTEECLHAELQETE---------VELSHGYALRSRIV-SGSDDNTLKVW 208
+W+P ++ A ++ + V + Y R+V +G D+ +K++
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195
>pdb|3TXM|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Gd(3+) Complex
pdb|3TXN|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Native Data
Length = 394
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 279 QFQRDFI--SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLH 336
Q +R F+ SL R +ALY T L E L AQ R + L + NLL + LE+ T H
Sbjct: 91 QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH 150
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 498 HQSAVTCLQFNSR---FVITSSDDGTVKLWDVK 527
H++ VT +FN R + TSS D TVKLWD++
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 557 HLQFNSR---FVITSSDDGTVKLWDVK 580
H +FN R + TSS D TVKLWD++
Sbjct: 208 HAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 498 HQSAVTCLQFNSR---FVITSSDDGTVKLWDVK 527
H++ VT +FN R + TSS D TVKLWD++
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 557 HLQFNSR---FVITSSDDGTVKLWDVK 580
H +FN R + TSS D TVKLWD++
Sbjct: 209 HAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 152 GKLVVSGAYDYMVKIW--NPDTEEC 174
G+++ S +YD VK+W +PD EEC
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEEC 95
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 152 GKLVVSGAYDYMVKIW--NPDTEEC 174
G+++ S +YD VK+W +PD EEC
Sbjct: 69 GRIIASASYDKTVKLWEEDPDQEEC 93
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 152 GKLVVSGAYDYMVKIW--NPDTEEC 174
G+++ S +YD VK+W +PD EEC
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEEC 95
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 50/205 (24%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSG-NADSTVKV 407
F+F G H + + W +SG+ L G Q L E R ++V+ A TV++
Sbjct: 56 FEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ-LEEAGEYRCEVVVTPLKAQGTVQL 114
Query: 408 WDIVSGTKKLMFRICLFDGVHV----------VSGSLDTSIRV-WEAESGNLRHTLMGHQ 456
+ S +L L D V + SG +I + WE ++ H + +
Sbjct: 115 EVVASPASRL-----LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISE 169
Query: 457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS 516
+ +G ++ N D T V +CL+ NS +
Sbjct: 170 DVITGPTIK-------NMDGTFNV---------------------TSCLKLNS----SQE 197
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFIL 541
D GTV V+ TPL S+F L
Sbjct: 198 DPGTVYQCVVRHASLHTPLRSNFTL 222
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
LP EL L + + L +LL+ + C+ W LA D LW+
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 195 RIVSGSDDNTLKVWS--ATTGKCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGW 248
R+ + S D T+K++ T K + TL GH G VW A G I+ S S D + W
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 80/230 (34%), Gaps = 74/230 (32%)
Query: 85 TCLQFSGSRIVSGSDDNTLKV-------------------------WSATTGKCLLVSGS 119
L + G R+ + S D T+K+ W+ +L S S
Sbjct: 15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 120 RDATLRVWHIESGECLHVLVG--HLAAVRCVQYD----GKLVVSGAYDYMVKI------- 166
D + +W E+G + V H A+V VQ+ G L++ + D V +
Sbjct: 75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134
Query: 167 ------------------WNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVW 208
W P T E E +G + V+G DN +K+W
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATIE---------EDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 209 S----ATTGKCLRTLIGHTGGV----WS-SQMAGNIIISGSTDRTLKGWS 249
A T TL GH+ V WS + + + + S S DRT W+
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 464 LRNNILVSGNADSTVKVWDI-----VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD 518
LR +++ N+ +K+WD Q L +L+G V V T D
Sbjct: 200 LRTPEILTVNSIGQLKIWDFRQQGNEPSQIL-SLTGDRVPLHCVDRHPNQQHVVATGGQD 258
Query: 519 GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578
G + +WDV+ G L+ + + ++ P N + T S+DG++ WD
Sbjct: 259 GMLSIWDVRQGTMPVSLLKAHEAE--MWEVHFHP-------SNPEHLFTCSEDGSLWHWD 309
Query: 579 VKT 581
T
Sbjct: 310 AST 312
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 53
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWR 326
LP EL L + + L +LL+ + C+ W LA D LW+
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 99 DDNTLK--VWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVV 156
DD L ++A G LV GS+ R WH G+ + L + ++ Y KL+V
Sbjct: 126 DDRVLHDDAFAAKYGDLGLVYGSQ---WRAWHTSKGDTIDQLGDVIEQIKTHPYSRKLIV 182
Query: 157 SGAYDYMVKIWNPD 170
S WNP+
Sbjct: 183 SA--------WNPE 188
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW 325
LP EL L + + L +LL+ + C+ W LA D LW
Sbjct: 4 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 195 RIVSGSDDNTLKVWS--ATTGKCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGW 248
R+ + S D T+K++ T K + TL GH G VW A G I+ S S D + W
Sbjct: 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 195 RIVSGSDDNTLKVWS--ATTGKCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGW 248
R+ + S D T+K++ T K + TL GH G VW A G I+ S S D + W
Sbjct: 23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG---MELRNNILVSGNADSTVK 479
+FD + +V+GS ++R W+ + G+ + Q L SG + L NN+ + ++
Sbjct: 248 MFDTL-LVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSE-LYG 305
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVIT--SSDDGTVKLWDV 526
V++ ++ +C Q ++ C + + F IT DD T+ LWD
Sbjct: 306 VYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDA 355
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG---MELRNNILVSGNADSTVK 479
+FD + +V+GS ++R W+ + G+ + Q L SG + L NN+ + ++
Sbjct: 248 MFDTL-LVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSE-LYG 305
Query: 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVIT--SSDDGTVKLWDV 526
V++ ++ +C Q ++ C + + F IT DD T+ LWD
Sbjct: 306 VYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDA 355
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 194 SRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVW----SSQMAGNIIISGSTDRTLKG 247
+R+ + S D ++K++ G + L GH G VW + M GNI+ S S DR +
Sbjct: 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 248 W 248
W
Sbjct: 86 W 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,185,795
Number of Sequences: 62578
Number of extensions: 784917
Number of successful extensions: 4620
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1668
Number of HSP's gapped (non-prelim): 898
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)