Query psy18018
Match_columns 635
No_of_seqs 737 out of 3588
Neff 12.0
Searched_HMMs 29240
Date Fri Aug 16 20:24:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.4E-63 1.2E-67 512.4 67.5 529 16-626 7-576 (577)
2 1nr0_A Actin interacting prote 100.0 1.5E-62 5.2E-67 506.9 61.5 505 7-629 41-610 (611)
3 1nr0_A Actin interacting prote 100.0 2.3E-59 8E-64 483.2 58.6 484 23-628 16-565 (611)
4 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-59 3.8E-64 528.9 52.8 541 18-630 608-1247(1249)
5 2ymu_A WD-40 repeat protein; u 100.0 1.4E-57 4.6E-62 470.5 61.3 457 6-578 39-577 (577)
6 1pgu_A Actin interacting prote 100.0 4.9E-58 1.7E-62 478.3 56.1 492 23-630 16-614 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-52 3.9E-57 447.8 56.8 518 19-627 11-780 (902)
8 1pgu_A Actin interacting prote 100.0 1.7E-51 5.7E-56 429.0 52.3 493 7-581 41-614 (615)
9 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-51 4.8E-56 463.2 53.3 490 73-631 608-1157(1249)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-48 5.9E-53 415.6 55.9 470 76-632 13-663 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 7E-45 2.4E-49 391.5 48.5 449 15-615 3-486 (814)
12 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-42 6.9E-47 344.1 48.5 340 62-582 100-443 (445)
13 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.1E-42 2.1E-46 340.7 46.4 337 132-635 108-445 (445)
14 3ow8_A WD repeat-containing pr 100.0 2E-40 7E-45 312.5 39.4 227 349-627 88-318 (321)
15 1vyh_C Platelet-activating fac 100.0 1.7E-40 5.6E-45 325.0 38.7 283 135-580 101-410 (410)
16 1vyh_C Platelet-activating fac 100.0 1.6E-40 5.4E-45 325.1 38.5 304 17-484 100-410 (410)
17 3mkq_A Coatomer beta'-subunit; 100.0 5.2E-40 1.8E-44 353.6 45.1 397 71-631 4-459 (814)
18 3ow8_A WD repeat-containing pr 100.0 5.3E-40 1.8E-44 309.7 39.1 283 73-527 25-320 (321)
19 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.6E-44 305.2 41.1 223 349-620 63-295 (304)
20 3v7d_B Cell division control p 100.0 1E-38 3.6E-43 319.7 47.9 346 133-631 112-464 (464)
21 2pbi_B Guanine nucleotide-bind 100.0 6.6E-39 2.2E-43 307.0 41.3 228 349-626 114-353 (354)
22 1got_B GT-beta; complex (GTP-b 100.0 9.1E-39 3.1E-43 304.8 42.1 282 70-525 45-340 (340)
23 1got_B GT-beta; complex (GTP-b 100.0 2.9E-39 9.9E-44 308.2 37.3 288 15-409 45-340 (340)
24 2ynn_A Coatomer subunit beta'; 100.0 2.4E-38 8.2E-43 296.7 41.8 286 71-582 4-303 (304)
25 3frx_A Guanine nucleotide-bind 100.0 4.9E-39 1.7E-43 303.5 36.2 301 72-582 9-318 (319)
26 3frx_A Guanine nucleotide-bind 100.0 3.9E-38 1.3E-42 297.3 41.6 230 349-628 73-315 (319)
27 3iz6_a 40S ribosomal protein R 100.0 2.1E-39 7.3E-44 314.1 32.9 311 124-628 48-373 (380)
28 1r5m_A SIR4-interacting protei 100.0 1.4E-38 4.6E-43 315.7 39.2 333 123-630 26-423 (425)
29 3v7d_B Cell division control p 100.0 1.3E-37 4.5E-42 311.7 46.0 350 65-577 105-459 (464)
30 2hes_X YDR267CP; beta-propelle 100.0 2.5E-38 8.4E-43 300.2 38.2 298 69-581 3-328 (330)
31 1r5m_A SIR4-interacting protei 100.0 1.3E-38 4.3E-43 315.9 37.2 333 6-527 26-424 (425)
32 4g56_B MGC81050 protein; prote 100.0 6.8E-39 2.3E-43 307.0 33.1 284 139-585 39-347 (357)
33 4gqb_B Methylosome protein 50; 100.0 1.7E-38 5.7E-43 301.3 34.3 236 344-631 85-332 (344)
34 4g56_B MGC81050 protein; prote 100.0 1.1E-38 3.9E-43 305.5 33.3 307 192-628 15-341 (357)
35 4gqb_B Methylosome protein 50; 100.0 1.9E-38 6.5E-43 300.9 34.3 279 140-583 28-333 (344)
36 2pbi_B Guanine nucleotide-bind 100.0 1.5E-38 5E-43 304.6 33.8 290 15-409 54-354 (354)
37 3iz6_a 40S ribosomal protein R 100.0 2E-38 6.8E-43 307.3 33.8 298 62-530 48-377 (380)
38 1erj_A Transcriptional repress 100.0 1.6E-37 5.5E-42 302.5 38.0 291 22-486 61-390 (393)
39 2xzm_R RACK1; ribosome, transl 100.0 6.4E-37 2.2E-41 292.6 41.3 230 349-630 84-340 (343)
40 4ery_A WD repeat-containing pr 100.0 3.9E-36 1.3E-40 283.8 43.7 230 349-629 73-311 (312)
41 1gxr_A ESG1, transducin-like e 100.0 3.1E-36 1.1E-40 288.6 41.7 318 24-579 8-335 (337)
42 4ery_A WD repeat-containing pr 100.0 5.3E-36 1.8E-40 282.8 42.6 288 70-580 13-311 (312)
43 2xzm_R RACK1; ribosome, transl 100.0 1E-36 3.5E-41 291.2 37.5 309 71-583 12-342 (343)
44 2hes_X YDR267CP; beta-propelle 100.0 9.2E-37 3.2E-41 289.4 35.8 300 211-627 2-325 (330)
45 2pm9_A Protein WEB1, protein t 100.0 4.8E-38 1.7E-42 310.5 27.2 366 24-582 11-415 (416)
46 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-36 8.7E-41 288.3 38.0 304 132-588 5-342 (345)
47 3vl1_A 26S proteasome regulato 100.0 1.6E-36 5.5E-41 299.9 36.1 343 145-581 59-419 (420)
48 4aow_A Guanine nucleotide-bind 100.0 7.7E-36 2.6E-40 286.1 39.0 301 130-583 26-339 (340)
49 2pm9_A Protein WEB1, protein t 100.0 9.4E-38 3.2E-42 308.5 26.1 329 143-628 13-412 (416)
50 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-36 6.7E-41 289.1 34.0 203 15-250 5-223 (345)
51 1erj_A Transcriptional repress 100.0 4.7E-35 1.6E-39 285.1 42.6 278 140-582 62-390 (393)
52 1gxr_A ESG1, transducin-like e 100.0 1E-35 3.4E-40 285.0 36.3 314 141-628 8-335 (337)
53 4aow_A Guanine nucleotide-bind 100.0 3.6E-35 1.2E-39 281.4 38.8 299 67-530 25-339 (340)
54 3gre_A Serine/threonine-protei 100.0 4.3E-36 1.5E-40 298.2 33.3 392 14-578 6-437 (437)
55 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-35 5.5E-40 293.1 34.8 283 137-533 128-419 (435)
56 3vl1_A 26S proteasome regulato 100.0 1.2E-34 4.2E-39 286.4 36.7 333 30-528 60-419 (420)
57 3dm0_A Maltose-binding peripla 100.0 4E-34 1.4E-38 300.4 42.1 228 349-627 438-690 (694)
58 2j04_B YDR362CP, TAU91; beta p 100.0 4.4E-36 1.5E-40 298.7 24.7 345 71-581 125-517 (524)
59 3dm0_A Maltose-binding peripla 100.0 3.5E-34 1.2E-38 300.8 40.5 297 73-581 375-693 (694)
60 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-34 9.8E-39 284.1 35.2 265 341-632 131-414 (435)
61 3k26_A Polycomb protein EED; W 100.0 1.7E-34 5.7E-39 280.0 31.4 309 137-581 13-366 (366)
62 1sq9_A Antiviral protein SKI8; 100.0 3.6E-34 1.2E-38 280.8 33.8 304 134-583 8-397 (397)
63 3odt_A Protein DOA1; ubiquitin 100.0 7.6E-33 2.6E-37 261.9 41.4 288 70-535 8-303 (313)
64 3gre_A Serine/threonine-protei 100.0 4.8E-34 1.6E-38 283.5 34.4 338 131-626 51-436 (437)
65 1sq9_A Antiviral protein SKI8; 100.0 3.3E-34 1.1E-38 281.1 32.7 296 73-530 9-397 (397)
66 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-35 6.2E-40 294.3 23.8 360 133-632 125-519 (524)
67 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-33 9.5E-38 264.9 36.0 292 14-493 7-304 (313)
68 3zwl_B Eukaryotic translation 100.0 6.3E-33 2.2E-37 269.2 39.4 299 133-587 23-352 (369)
69 4a11_B DNA excision repair pro 100.0 1.3E-33 4.5E-38 278.1 33.9 344 59-528 22-405 (408)
70 3zwl_B Eukaryotic translation 100.0 3.3E-33 1.1E-37 271.2 35.9 300 18-491 25-352 (369)
71 3ei3_B DNA damage-binding prot 100.0 3E-33 1E-37 272.5 35.6 293 127-581 58-382 (383)
72 3k26_A Polycomb protein EED; W 100.0 1.1E-33 3.7E-38 274.2 32.1 252 342-630 70-364 (366)
73 4gga_A P55CDC, cell division c 100.0 8.2E-33 2.8E-37 272.2 38.7 225 349-588 155-402 (420)
74 4e54_B DNA damage-binding prot 100.0 2.9E-34 9.8E-39 283.8 26.6 308 69-585 108-434 (435)
75 4aez_A CDC20, WD repeat-contai 100.0 1.6E-32 5.3E-37 268.5 38.6 292 135-589 84-388 (401)
76 3ei3_B DNA damage-binding prot 100.0 4.7E-33 1.6E-37 271.0 34.4 305 63-528 56-382 (383)
77 4a11_B DNA excision repair pro 100.0 9.2E-33 3.2E-37 272.0 34.5 335 9-484 27-404 (408)
78 1k8k_C P40, ARP2/3 complex 41 100.0 6E-33 2.1E-37 269.6 32.0 313 20-487 3-363 (372)
79 4aez_A CDC20, WD repeat-contai 100.0 4.2E-32 1.4E-36 265.5 36.6 231 347-631 140-379 (401)
80 4h5i_A Guanine nucleotide-exch 100.0 6.1E-32 2.1E-36 259.5 36.3 272 341-628 14-341 (365)
81 3i2n_A WD repeat-containing pr 100.0 1.1E-32 3.7E-37 266.2 31.0 310 135-584 11-356 (357)
82 4e54_B DNA damage-binding prot 100.0 7.2E-33 2.5E-37 273.8 28.5 273 342-627 120-427 (435)
83 4ggc_A P55CDC, cell division c 100.0 3.5E-31 1.2E-35 251.0 38.2 220 349-583 75-317 (318)
84 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-34 1.9E-38 274.6 18.8 313 80-617 15-350 (588)
85 2pm7_B Protein transport prote 100.0 5.5E-32 1.9E-36 252.6 31.8 246 341-629 9-284 (297)
86 3i2n_A WD repeat-containing pr 100.0 2.4E-32 8.3E-37 263.7 29.2 246 343-632 67-353 (357)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1E-31 3.6E-36 260.8 33.9 271 340-627 7-358 (372)
88 3dwl_C Actin-related protein 2 100.0 5.3E-33 1.8E-37 270.2 24.6 331 19-483 5-377 (377)
89 2pm7_B Protein transport prote 100.0 1.2E-31 4.2E-36 250.2 31.4 198 19-249 3-235 (297)
90 4h5i_A Guanine nucleotide-exch 100.0 1.7E-31 5.7E-36 256.4 32.7 294 25-485 14-343 (365)
91 1yfq_A Cell cycle arrest prote 100.0 2.6E-31 8.9E-36 254.7 33.3 234 349-620 64-315 (342)
92 3mmy_A MRNA export factor; mRN 100.0 4.7E-31 1.6E-35 255.9 35.2 236 349-620 94-338 (368)
93 4gga_A P55CDC, cell division c 100.0 1.2E-30 4E-35 256.8 36.9 261 344-628 108-393 (420)
94 1k32_A Tricorn protease; prote 100.0 4.3E-30 1.5E-34 281.5 44.4 476 7-619 35-629 (1045)
95 4ggc_A P55CDC, cell division c 100.0 1.9E-30 6.4E-35 246.0 36.0 263 344-627 28-312 (318)
96 3bg1_A Protein SEC13 homolog; 100.0 7.3E-32 2.5E-36 254.0 23.9 198 19-249 7-244 (316)
97 3mmy_A MRNA export factor; mRN 100.0 6.6E-31 2.3E-35 254.9 31.4 291 65-483 24-344 (368)
98 3bg1_A Protein SEC13 homolog; 100.0 1.1E-31 3.8E-36 252.7 24.0 242 341-629 13-292 (316)
99 3dw8_B Serine/threonine-protei 100.0 1.1E-30 3.7E-35 260.4 32.4 275 340-619 27-438 (447)
100 3vu4_A KMHSV2; beta-propeller 100.0 3.1E-30 1.1E-34 246.9 33.6 294 207-633 3-339 (355)
101 3dwl_C Actin-related protein 2 100.0 4.6E-32 1.6E-36 263.6 20.7 303 137-579 6-377 (377)
102 1yfq_A Cell cycle arrest prote 100.0 2.6E-30 9.1E-35 247.7 32.0 277 19-482 5-321 (342)
103 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-30 1.3E-34 247.7 30.6 305 136-589 5-345 (351)
104 1k32_A Tricorn protease; prote 100.0 5E-28 1.7E-32 265.2 50.5 471 24-632 13-600 (1045)
105 3jrp_A Fusion protein of prote 100.0 6.2E-30 2.1E-34 249.1 30.8 245 344-629 14-286 (379)
106 3f3f_A Nucleoporin SEH1; struc 100.0 8.9E-30 3.1E-34 245.1 31.2 298 17-418 3-343 (351)
107 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-31 8E-36 256.3 19.4 308 26-569 16-349 (588)
108 3jrp_A Fusion protein of prote 100.0 5.7E-29 1.9E-33 242.3 35.4 265 70-490 1-292 (379)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-30 2.1E-34 250.4 26.8 228 352-629 93-341 (402)
110 3vu4_A KMHSV2; beta-propeller 100.0 5.4E-29 1.8E-33 238.3 32.3 287 126-530 3-338 (355)
111 3dw8_B Serine/threonine-protei 100.0 2.7E-29 9.2E-34 250.3 30.9 325 140-579 26-444 (447)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.1E-29 3.1E-33 245.7 32.9 280 342-631 5-392 (450)
113 1l0q_A Surface layer protein; 100.0 5.8E-27 2E-31 228.9 44.6 339 113-619 3-372 (391)
114 4gq1_A NUP37; propeller, trans 100.0 2E-29 6.9E-34 245.0 26.1 252 346-625 94-387 (393)
115 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-28 5.1E-33 234.8 28.4 269 190-621 45-326 (343)
116 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.4E-32 215.8 31.3 283 105-526 46-355 (356)
117 3lrv_A PRE-mRNA-splicing facto 100.0 5.4E-28 1.9E-32 230.9 30.2 185 349-580 133-332 (343)
118 3bws_A Protein LP49; two-domai 100.0 5.5E-27 1.9E-31 232.5 37.7 225 349-631 177-431 (433)
119 1l0q_A Surface layer protein; 100.0 1.6E-26 5.4E-31 225.8 40.0 269 153-589 3-283 (391)
120 2w18_A PALB2, fancn, partner a 100.0 3.8E-28 1.3E-32 219.2 26.0 255 355-627 56-354 (356)
121 3jro_A Fusion protein of prote 100.0 1.2E-28 4E-33 259.9 26.4 260 73-488 2-288 (753)
122 3bws_A Protein LP49; two-domai 100.0 4E-26 1.4E-30 226.2 42.9 297 117-581 94-432 (433)
123 4gq1_A NUP37; propeller, trans 100.0 1.7E-28 5.7E-33 238.5 23.2 206 352-580 155-388 (393)
124 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-27 6.7E-32 232.7 30.2 283 30-415 38-345 (402)
125 3jro_A Fusion protein of prote 100.0 3.3E-28 1.1E-32 256.5 26.3 245 344-631 12-284 (753)
126 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.9E-27 2E-31 232.7 32.2 195 344-581 152-391 (450)
127 2xyi_A Probable histone-bindin 100.0 6E-27 2.1E-31 230.8 30.1 243 340-629 127-409 (430)
128 1nir_A Nitrite reductase; hemo 100.0 8.5E-25 2.9E-29 219.7 37.4 314 151-589 148-522 (543)
129 2xyi_A Probable histone-bindin 99.9 7.3E-26 2.5E-30 223.1 27.9 206 19-252 122-353 (430)
130 1nir_A Nitrite reductase; hemo 99.9 2.1E-23 7E-28 209.7 38.2 309 119-537 156-523 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-22 3.5E-27 198.7 32.3 207 348-610 185-410 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.4E-21 1.2E-25 188.0 32.7 264 130-563 103-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-21 7.1E-26 206.2 30.6 262 346-630 156-457 (741)
134 3vgz_A Uncharacterized protein 99.9 2.4E-19 8.2E-24 172.2 33.6 257 342-618 41-334 (353)
135 2z3z_A Dipeptidyl aminopeptida 99.9 7.6E-20 2.6E-24 192.9 32.1 146 422-583 265-437 (706)
136 2ecf_A Dipeptidyl peptidase IV 99.9 9.8E-20 3.4E-24 193.3 32.4 368 82-582 38-460 (741)
137 2z3z_A Dipeptidyl aminopeptida 99.9 6.3E-20 2.1E-24 193.6 28.3 334 193-631 35-434 (706)
138 1pby_B Quinohemoprotein amine 99.9 9.3E-20 3.2E-24 173.9 26.4 273 153-589 2-318 (337)
139 3u4y_A Uncharacterized protein 99.9 1.1E-18 3.8E-23 165.8 33.4 265 349-631 5-303 (331)
140 3u4y_A Uncharacterized protein 99.9 2.3E-18 8E-23 163.5 33.2 277 152-584 10-307 (331)
141 1ri6_A Putative isomerase YBHE 99.8 1.1E-18 3.8E-23 166.8 29.5 262 355-630 7-308 (343)
142 3vgz_A Uncharacterized protein 99.8 4.6E-18 1.6E-22 163.3 33.7 274 142-572 40-335 (353)
143 1pby_B Quinohemoprotein amine 99.8 6.9E-19 2.4E-23 167.8 27.4 252 354-632 2-310 (337)
144 1ri6_A Putative isomerase YBHE 99.8 2.6E-18 8.8E-23 164.3 31.0 219 346-610 88-335 (343)
145 2ojh_A Uncharacterized protein 99.8 1.9E-19 6.5E-24 168.3 22.2 224 344-619 44-293 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.8 3.3E-19 1.1E-23 188.8 24.1 332 190-618 25-430 (723)
147 3o4h_A Acylamino-acid-releasin 99.8 2.2E-18 7.5E-23 177.1 29.4 260 342-631 22-314 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.8 7.6E-19 2.6E-23 186.0 25.0 271 344-632 19-395 (723)
149 2ojh_A Uncharacterized protein 99.8 2.5E-17 8.7E-22 153.7 25.7 181 347-572 90-293 (297)
150 3scy_A Hypothetical bacterial 99.8 3.7E-16 1.3E-20 150.2 34.1 251 342-606 50-360 (361)
151 3hfq_A Uncharacterized protein 99.8 1.6E-16 5.4E-21 151.9 29.9 257 362-631 15-318 (347)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 4.2E-18 1.4E-22 166.5 16.0 154 455-620 91-264 (434)
153 2oiz_A Aromatic amine dehydrog 99.8 1.5E-15 5.2E-20 144.7 31.6 245 347-610 55-360 (361)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 3.1E-17 1.1E-21 160.3 19.8 201 342-582 37-279 (434)
155 3scy_A Hypothetical bacterial 99.8 1.1E-15 3.8E-20 146.9 29.9 262 354-631 14-338 (361)
156 1jmx_B Amine dehydrogenase; ox 99.8 5.3E-16 1.8E-20 148.5 27.6 262 151-494 10-334 (349)
157 1jmx_B Amine dehydrogenase; ox 99.8 1.3E-16 4.4E-21 152.8 23.2 234 348-631 6-324 (349)
158 3o4h_A Acylamino-acid-releasin 99.7 5.6E-16 1.9E-20 159.2 27.8 179 347-581 115-315 (582)
159 1z68_A Fibroblast activation p 99.7 1E-16 3.5E-21 169.3 22.3 340 189-631 22-442 (719)
160 3hfq_A Uncharacterized protein 99.7 2.9E-15 1E-19 143.0 28.8 234 344-586 42-324 (347)
161 3pe7_A Oligogalacturonate lyas 99.7 1.5E-15 5.2E-20 147.6 24.9 273 347-633 41-385 (388)
162 1z68_A Fibroblast activation p 99.7 3.3E-16 1.1E-20 165.4 21.8 268 346-631 20-392 (719)
163 2oiz_A Aromatic amine dehydrog 99.7 1.9E-14 6.4E-19 137.2 30.6 281 151-563 14-360 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 9.4E-15 3.2E-19 140.2 27.7 268 355-629 4-340 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.7 1.3E-14 4.5E-19 153.0 28.0 118 30-175 20-145 (740)
166 1qks_A Cytochrome CD1 nitrite 99.7 6.7E-13 2.3E-17 132.8 37.6 316 151-589 166-546 (567)
167 3q7m_A Lipoprotein YFGL, BAMB; 99.7 2.4E-13 8.3E-18 131.2 32.5 298 150-525 51-375 (376)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.9E-13 1.3E-17 128.9 33.4 197 347-582 88-342 (365)
169 3fvz_A Peptidyl-glycine alpha- 99.7 8.1E-14 2.8E-18 131.4 28.2 244 342-632 24-322 (329)
170 3pe7_A Oligogalacturonate lyas 99.7 1E-13 3.6E-18 134.6 29.8 104 125-228 13-127 (388)
171 3q7m_A Lipoprotein YFGL, BAMB; 99.7 7.7E-13 2.6E-17 127.6 35.3 291 192-578 52-375 (376)
172 3c5m_A Oligogalacturonate lyas 99.7 8.3E-14 2.9E-18 135.8 28.1 324 126-584 14-387 (396)
173 3c5m_A Oligogalacturonate lyas 99.6 6E-14 2E-18 136.8 23.7 263 346-633 40-385 (396)
174 3dsm_A Uncharacterized protein 99.6 2.1E-13 7.2E-18 128.2 26.1 248 360-631 14-301 (328)
175 4a5s_A Dipeptidyl peptidase 4 99.6 1.4E-13 4.8E-18 145.2 26.5 271 344-631 19-399 (740)
176 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-12 5.1E-17 120.3 30.3 236 342-628 30-278 (286)
177 3azo_A Aminopeptidase; POP fam 99.6 3E-13 1E-17 141.4 28.3 164 17-213 15-228 (662)
178 3no2_A Uncharacterized protein 99.6 8.2E-13 2.8E-17 120.1 26.9 217 352-616 4-231 (276)
179 1qks_A Cytochrome CD1 nitrite 99.6 9.1E-12 3.1E-16 124.6 36.4 322 106-537 161-547 (567)
180 3azo_A Aminopeptidase; POP fam 99.6 1.2E-12 4.2E-17 136.8 30.3 273 343-631 25-368 (662)
181 3e5z_A Putative gluconolactona 99.6 2.4E-12 8.1E-17 119.6 28.8 228 343-633 29-287 (296)
182 3dsm_A Uncharacterized protein 99.6 5.2E-12 1.8E-16 118.7 30.3 260 121-494 16-310 (328)
183 2gop_A Trilobed protease; beta 99.6 4.1E-12 1.4E-16 121.2 28.6 243 346-629 63-330 (347)
184 2dg1_A DRP35, lactonase; beta 99.5 4E-12 1.4E-16 120.4 27.8 276 346-633 10-317 (333)
185 3sjl_D Methylamine dehydrogena 99.5 1.5E-11 5E-16 114.9 29.3 243 347-608 83-384 (386)
186 2mad_H Methylamine dehydrogena 99.5 5.4E-11 1.8E-15 113.2 33.3 267 350-632 29-350 (373)
187 3no2_A Uncharacterized protein 99.5 1.4E-11 4.9E-16 111.9 28.1 199 348-591 43-262 (276)
188 4a2l_A BT_4663, two-component 99.5 1.1E-07 3.7E-12 101.2 62.1 488 29-631 90-658 (795)
189 2gop_A Trilobed protease; beta 99.5 2.6E-11 8.9E-16 115.6 29.7 292 144-588 16-336 (347)
190 3fvz_A Peptidyl-glycine alpha- 99.5 4.6E-11 1.6E-15 112.5 30.2 180 26-232 24-249 (329)
191 3sjl_D Methylamine dehydrogena 99.5 1.4E-11 4.7E-16 115.1 25.4 268 349-632 40-363 (386)
192 2mad_H Methylamine dehydrogena 99.5 5.1E-10 1.8E-14 106.4 36.7 195 346-588 129-357 (373)
193 4a2l_A BT_4663, two-component 99.5 4.7E-08 1.6E-12 104.0 55.7 455 84-631 90-613 (795)
194 1kb0_A Quinohemoprotein alcoho 99.5 4.3E-11 1.5E-15 123.4 30.8 162 437-614 284-537 (677)
195 1yiq_A Quinohemoprotein alcoho 99.5 6.1E-11 2.1E-15 122.5 31.9 164 437-616 276-537 (689)
196 1q7f_A NHL, brain tumor CG1071 99.5 1E-10 3.5E-15 107.9 29.9 235 140-487 27-282 (286)
197 1kb0_A Quinohemoprotein alcoho 99.5 1.2E-10 4E-15 120.2 32.8 93 436-528 457-567 (677)
198 2xdw_A Prolyl endopeptidase; a 99.5 1.2E-10 4E-15 122.4 33.4 264 350-632 80-414 (710)
199 2z2n_A Virginiamycin B lyase; 99.5 7.3E-10 2.5E-14 103.0 35.2 264 342-632 15-295 (299)
200 1rwi_B Serine/threonine-protei 99.5 1.9E-11 6.6E-16 111.8 23.7 234 343-631 25-263 (270)
201 2bkl_A Prolyl endopeptidase; m 99.4 4.8E-11 1.6E-15 124.9 28.9 196 346-584 172-400 (695)
202 3c75_H MADH, methylamine dehyd 99.4 7E-11 2.4E-15 112.6 26.8 266 351-632 82-402 (426)
203 1yiq_A Quinohemoprotein alcoho 99.4 1.9E-10 6.5E-15 118.9 31.0 168 347-515 240-536 (689)
204 2bkl_A Prolyl endopeptidase; m 99.4 6.6E-11 2.2E-15 123.9 26.9 266 349-632 75-397 (695)
205 1xip_A Nucleoporin NUP159; bet 99.4 7E-12 2.4E-16 117.6 17.4 139 455-615 87-231 (388)
206 2xdw_A Prolyl endopeptidase; a 99.4 2.8E-10 9.4E-15 119.5 30.9 226 345-583 128-416 (710)
207 3hxj_A Pyrrolo-quinoline quino 99.4 8E-11 2.7E-15 111.3 23.5 305 170-581 7-324 (330)
208 3v9f_A Two-component system se 99.4 6E-07 2E-11 95.3 55.7 464 84-631 68-610 (781)
209 3c75_H MADH, methylamine dehyd 99.4 5.2E-10 1.8E-14 106.6 28.7 230 347-588 123-409 (426)
210 3v9f_A Two-component system se 99.4 1E-06 3.6E-11 93.5 59.1 449 85-619 118-648 (781)
211 2z2n_A Virginiamycin B lyase; 99.3 2.5E-08 8.5E-13 92.5 37.3 188 347-583 104-297 (299)
212 2qc5_A Streptogramin B lactona 99.3 9.6E-09 3.3E-13 95.4 34.1 262 342-631 20-299 (300)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 8.4E-10 2.9E-14 103.4 26.3 239 343-633 19-300 (314)
214 3e5z_A Putative gluconolactona 99.3 5.9E-10 2E-14 103.3 24.6 212 14-246 16-281 (296)
215 3hxj_A Pyrrolo-quinoline quino 99.3 2.6E-10 8.9E-15 107.7 21.9 274 121-485 39-324 (330)
216 1rwi_B Serine/threonine-protei 99.3 1.4E-09 4.9E-14 99.3 24.7 195 344-584 69-267 (270)
217 2dg1_A DRP35, lactonase; beta 99.3 2.9E-09 1E-13 100.6 27.3 184 30-251 9-212 (333)
218 1yr2_A Prolyl oligopeptidase; 99.3 4.6E-09 1.6E-13 110.7 30.8 265 349-631 114-440 (741)
219 1yr2_A Prolyl oligopeptidase; 99.3 6.7E-10 2.3E-14 117.1 24.2 226 345-584 166-444 (741)
220 2hz6_A Endoplasmic reticulum t 99.2 1.4E-11 4.8E-16 117.5 8.4 203 352-611 8-217 (369)
221 1kv9_A Type II quinohemoprotei 99.2 1.1E-08 3.8E-13 105.4 29.7 250 352-617 116-521 (668)
222 1kv9_A Type II quinohemoprotei 99.2 9.1E-09 3.1E-13 106.0 28.9 81 435-516 437-520 (668)
223 1mda_H Methylamine dehydrogena 99.2 4.5E-09 1.6E-13 98.5 24.2 235 349-607 72-366 (368)
224 3hrp_A Uncharacterized protein 99.2 1.3E-08 4.3E-13 98.4 27.9 248 342-630 131-408 (409)
225 2ad6_A Methanol dehydrogenase 99.2 9.2E-08 3.2E-12 96.4 34.9 161 437-613 273-522 (571)
226 2hz6_A Endoplasmic reticulum t 99.2 3.7E-13 1.3E-17 128.4 -4.8 248 150-484 7-278 (369)
227 1w6s_A Methanol dehydrogenase 99.2 3.2E-07 1.1E-11 92.3 37.2 245 356-616 124-535 (599)
228 2iwa_A Glutamine cyclotransfer 99.2 2.1E-08 7.3E-13 88.3 24.7 184 435-632 43-237 (266)
229 2qe8_A Uncharacterized protein 99.2 5.5E-09 1.9E-13 98.8 22.4 268 342-632 17-337 (343)
230 1xip_A Nucleoporin NUP159; bet 99.2 1.3E-08 4.6E-13 95.5 24.5 179 343-567 39-230 (388)
231 2qc5_A Streptogramin B lactona 99.1 9.3E-07 3.2E-11 81.8 36.8 185 347-580 109-299 (300)
232 3g4e_A Regucalcin; six bladed 99.1 4.5E-08 1.5E-12 90.4 27.4 223 345-617 16-261 (297)
233 2ad6_A Methanol dehydrogenase 99.1 1.7E-07 5.7E-12 94.5 32.9 305 151-495 61-504 (571)
234 1w6s_A Methanol dehydrogenase 99.1 2.6E-07 8.9E-12 92.9 32.9 305 151-495 61-513 (599)
235 1flg_A Protein (quinoprotein e 99.1 2E-07 6.8E-12 94.0 31.7 332 193-616 68-548 (582)
236 1mda_H Methylamine dehydrogena 99.1 8.3E-09 2.8E-13 96.7 19.8 247 364-632 47-346 (368)
237 3nok_A Glutaminyl cyclase; bet 99.1 7.7E-08 2.6E-12 83.4 23.9 188 429-630 68-264 (268)
238 1flg_A Protein (quinoprotein e 99.1 3.3E-07 1.1E-11 92.4 32.3 61 435-495 465-526 (582)
239 2ece_A 462AA long hypothetical 99.1 8.3E-08 2.9E-12 90.1 24.6 190 422-616 145-399 (462)
240 3nol_A Glutamine cyclotransfer 99.0 2.4E-07 8.2E-12 80.4 25.0 189 429-631 56-255 (262)
241 3dr2_A Exported gluconolactona 99.0 1.2E-07 4E-12 88.1 24.7 222 345-629 48-303 (305)
242 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 3E-07 1E-11 85.9 27.5 65 347-411 231-298 (314)
243 2ghs_A AGR_C_1268P; regucalcin 99.0 5.5E-07 1.9E-11 84.3 28.8 216 346-616 53-290 (326)
244 3iuj_A Prolyl endopeptidase; h 99.0 4.8E-08 1.7E-12 101.8 23.2 211 23-252 126-359 (693)
245 3iuj_A Prolyl endopeptidase; h 99.0 2.3E-07 8E-12 96.7 27.3 224 345-584 132-408 (693)
246 2iwa_A Glutamine cyclotransfer 99.0 4.5E-07 1.5E-11 80.0 24.2 207 345-583 24-239 (266)
247 3mbr_X Glutamine cyclotransfer 98.9 1.4E-06 4.8E-11 75.0 26.2 182 436-631 43-234 (243)
248 3nol_A Glutamine cyclotransfer 98.9 3.5E-07 1.2E-11 79.4 20.3 194 376-571 34-245 (262)
249 3hrp_A Uncharacterized protein 98.9 4.3E-06 1.5E-10 80.7 29.9 68 458-526 324-408 (409)
250 3nok_A Glutaminyl cyclase; bet 98.8 2.7E-07 9.3E-12 80.0 18.4 183 385-569 56-253 (268)
251 1fwx_A Nitrous oxide reductase 98.8 2.4E-07 8.3E-12 90.4 20.0 258 356-618 18-408 (595)
252 3mbr_X Glutamine cyclotransfer 98.8 1.4E-06 4.9E-11 75.0 22.2 193 376-570 12-223 (243)
253 3g4e_A Regucalcin; six bladed 98.8 4.6E-06 1.6E-10 76.8 26.5 201 114-392 27-249 (297)
254 3ei3_A DNA damage-binding prot 98.7 0.00065 2.2E-08 74.0 51.4 162 363-528 807-999 (1158)
255 1fwx_A Nitrous oxide reductase 98.7 3E-06 1E-10 82.9 22.7 195 425-631 100-360 (595)
256 2qe8_A Uncharacterized protein 98.7 1.3E-06 4.3E-11 82.5 19.7 153 81-249 17-194 (343)
257 3ei3_A DNA damage-binding prot 98.7 0.001 3.4E-08 72.5 50.2 173 436-630 807-999 (1158)
258 3dr2_A Exported gluconolactona 98.6 8.3E-06 2.8E-10 75.5 22.0 208 17-247 36-302 (305)
259 2ghs_A AGR_C_1268P; regucalcin 98.6 2.8E-05 9.7E-10 72.5 25.8 185 422-630 56-258 (326)
260 1k3i_A Galactose oxidase precu 98.5 1.1E-05 3.7E-10 83.5 22.2 260 346-617 190-530 (656)
261 1npe_A Nidogen, entactin; glyc 98.5 0.00029 9.8E-09 63.5 28.8 236 354-610 2-263 (267)
262 2ece_A 462AA long hypothetical 98.5 1.3E-05 4.6E-10 75.4 19.3 193 425-631 94-351 (462)
263 3s94_A LRP-6, low-density lipo 98.4 0.0024 8.2E-08 64.9 44.5 177 434-632 324-510 (619)
264 2p4o_A Hypothetical protein; p 98.3 0.001 3.5E-08 61.3 28.6 227 344-617 34-277 (306)
265 1npe_A Nidogen, entactin; glyc 98.3 0.0011 3.7E-08 59.7 27.6 189 344-537 38-247 (267)
266 1k3i_A Galactose oxidase precu 98.2 8.9E-05 3.1E-09 76.7 21.0 214 347-570 248-530 (656)
267 2fp8_A Strictosidine synthase; 98.1 0.0021 7.3E-08 59.7 26.3 137 475-632 164-313 (322)
268 4a0p_A LRP6, LRP-6, low-densit 98.0 0.016 5.5E-07 58.9 51.3 156 457-631 340-507 (628)
269 3amr_A 3-phytase; beta-propell 98.0 0.0014 4.8E-08 59.7 20.6 190 424-631 38-262 (355)
270 2vpj_A Kelch-like protein 12; 97.9 0.0063 2.1E-07 55.8 23.6 222 352-585 14-282 (301)
271 2vpj_A Kelch-like protein 12; 97.8 0.003 1E-07 57.9 21.4 195 422-633 59-279 (301)
272 3ii7_A Kelch-like protein 7; p 97.8 0.0065 2.2E-07 55.9 22.9 181 436-633 70-273 (306)
273 2xn4_A Kelch-like protein 2; s 97.8 0.01 3.5E-07 54.4 24.2 223 352-586 15-281 (302)
274 2xn4_A Kelch-like protein 2; s 97.8 0.0032 1.1E-07 57.8 20.4 195 422-633 58-277 (302)
275 3amr_A 3-phytase; beta-propell 97.8 0.01 3.4E-07 54.2 22.3 198 352-589 39-272 (355)
276 4asc_A Kelch repeat and BTB do 97.7 0.0046 1.6E-07 57.2 20.5 155 462-633 95-278 (315)
277 2be1_A Serine/threonine-protei 97.7 0.00049 1.7E-08 63.0 12.6 199 353-586 10-236 (339)
278 3ii7_A Kelch-like protein 7; p 97.7 0.03 1E-06 51.3 25.1 221 354-586 13-277 (306)
279 2fp8_A Strictosidine synthase; 97.7 0.0052 1.8E-07 57.0 19.9 141 458-617 81-248 (322)
280 3qqz_A Putative uncharacterize 97.6 0.016 5.4E-07 50.7 21.2 190 431-632 44-253 (255)
281 3tc9_A Hypothetical hydrolase; 97.6 0.053 1.8E-06 52.4 27.0 250 342-631 137-429 (430)
282 1zgk_A Kelch-like ECH-associat 97.6 0.0062 2.1E-07 56.0 19.0 181 436-633 90-288 (308)
283 3s94_A LRP-6, low-density lipo 97.6 0.092 3.2E-06 53.3 46.8 183 345-530 352-553 (619)
284 3ott_A Two-component system se 97.5 0.13 4.4E-06 54.2 54.5 216 384-620 373-619 (758)
285 2xzh_A Clathrin heavy chain 1; 97.5 0.047 1.6E-06 48.8 26.6 232 349-620 74-324 (365)
286 3v65_B Low-density lipoprotein 97.5 0.074 2.5E-06 50.5 28.4 218 355-589 89-326 (386)
287 4hw6_A Hypothetical protein, I 97.4 0.095 3.2E-06 50.6 25.7 160 465-631 239-432 (433)
288 2xe4_A Oligopeptidase B; hydro 97.4 0.011 3.6E-07 62.1 20.5 178 345-526 177-398 (751)
289 1zgk_A Kelch-like ECH-associat 97.4 0.028 9.7E-07 51.6 21.3 224 351-586 23-292 (308)
290 2woz_A Kelch repeat and BTB do 97.4 0.017 6E-07 53.3 19.9 179 438-633 80-288 (318)
291 3ott_A Two-component system se 97.4 0.19 6.6E-06 52.9 53.1 425 84-631 65-544 (758)
292 3kya_A Putative phosphatase; s 97.4 0.02 6.8E-07 55.5 19.7 161 459-632 141-341 (496)
293 2be1_A Serine/threonine-protei 97.3 0.017 5.7E-07 53.0 17.9 176 348-533 15-236 (339)
294 3tc9_A Hypothetical hydrolase; 97.3 0.019 6.3E-07 55.5 19.1 151 460-632 140-301 (430)
295 2xe4_A Oligopeptidase B; hydro 97.3 0.013 4.5E-07 61.4 19.5 190 420-630 179-398 (751)
296 2uvk_A YJHT; unknown function, 97.3 0.029 1E-06 52.8 19.9 144 476-633 168-343 (357)
297 3v65_B Low-density lipoprotein 97.3 0.14 4.7E-06 48.6 31.3 93 160-252 94-190 (386)
298 4a0p_A LRP6, LRP-6, low-densit 97.2 0.23 7.7E-06 50.5 53.5 148 458-629 390-546 (628)
299 3v64_C Agrin; beta propeller, 97.2 0.14 4.9E-06 47.7 29.3 217 355-588 46-282 (349)
300 3v64_C Agrin; beta propeller, 97.2 0.15 5.1E-06 47.6 29.7 184 422-629 80-272 (349)
301 2p4o_A Hypothetical protein; p 97.2 0.022 7.6E-07 52.2 17.7 156 458-630 73-240 (306)
302 1bpo_A Protein (clathrin); cla 97.2 0.15 5.2E-06 47.7 28.8 232 349-620 73-323 (494)
303 4asc_A Kelch repeat and BTB do 97.2 0.14 4.8E-06 47.0 25.1 219 355-587 7-283 (315)
304 4hw6_A Hypothetical protein, I 97.2 0.056 1.9E-06 52.2 20.7 152 459-632 141-304 (433)
305 2p9w_A MAL S 1 allergenic prot 97.1 0.028 9.5E-07 50.8 16.9 166 460-631 16-214 (334)
306 3qqz_A Putative uncharacterize 97.1 0.02 7E-07 50.1 15.6 172 451-631 21-203 (255)
307 2xzh_A Clathrin heavy chain 1; 97.1 0.16 5.4E-06 45.5 28.4 249 161-488 48-335 (365)
308 2woz_A Kelch repeat and BTB do 97.1 0.15 5E-06 47.0 21.9 220 354-587 17-293 (318)
309 3sov_A LRP-6, low-density lipo 97.0 0.19 6.4E-06 46.1 26.5 108 144-251 36-153 (318)
310 2p9w_A MAL S 1 allergenic prot 97.0 0.19 6.4E-06 45.5 21.7 149 428-582 26-216 (334)
311 1ijq_A LDL receptor, low-densi 97.0 0.22 7.5E-06 45.7 28.1 92 161-252 9-108 (316)
312 1ijq_A LDL receptor, low-densi 96.9 0.26 9E-06 45.2 29.8 190 345-536 33-246 (316)
313 2uvk_A YJHT; unknown function, 96.9 0.19 6.5E-06 47.2 21.4 228 349-588 16-349 (357)
314 1bpo_A Protein (clathrin); cla 96.9 0.3 1E-05 45.7 31.2 259 151-488 34-334 (494)
315 3pbp_A Nucleoporin NUP82; beta 96.8 0.071 2.4E-06 49.8 16.5 159 465-630 31-210 (452)
316 3sre_A PON1, serum paraoxonase 96.8 0.16 5.3E-06 47.1 18.9 144 474-634 81-254 (355)
317 3p5b_L Low density lipoprotein 96.7 0.46 1.6E-05 45.2 30.4 191 345-536 115-328 (400)
318 3m0c_C LDL receptor, low-densi 96.6 0.88 3E-05 47.5 28.4 190 345-535 427-639 (791)
319 3sov_A LRP-6, low-density lipo 96.6 0.45 1.5E-05 43.6 27.0 212 362-588 12-245 (318)
320 3p5b_L Low density lipoprotein 96.3 0.77 2.6E-05 43.7 32.0 50 121-171 91-143 (400)
321 2zwa_A Leucine carboxyl methyl 96.1 1.2 4E-05 46.1 23.1 185 437-631 469-693 (695)
322 1n7d_A LDL receptor, low-densi 96.1 0.079 2.7E-06 54.8 14.3 192 343-536 407-622 (699)
323 2zwa_A Leucine carboxyl methyl 96.0 0.59 2E-05 48.3 20.2 189 436-633 412-636 (695)
324 2xbg_A YCF48-like protein; pho 96.0 0.98 3.4E-05 41.5 30.9 259 348-630 42-320 (327)
325 3sre_A PON1, serum paraoxonase 95.9 1 3.5E-05 41.6 20.5 64 552-618 222-287 (355)
326 2xbg_A YCF48-like protein; pho 95.9 1 3.5E-05 41.4 31.2 60 348-409 256-319 (327)
327 3m0c_C LDL receptor, low-densi 95.8 2.2 7.5E-05 44.6 31.1 50 121-171 403-455 (791)
328 1n7d_A LDL receptor, low-densi 95.6 0.09 3.1E-06 54.4 12.2 137 85-221 456-623 (699)
329 1xi4_A Clathrin heavy chain; a 95.3 1.2 4E-05 49.0 19.2 228 349-620 73-323 (1630)
330 1xi4_A Clathrin heavy chain; a 95.2 2.5 8.6E-05 46.5 21.4 88 160-252 46-134 (1630)
331 3kya_A Putative phosphatase; s 95.2 2.4 8.3E-05 41.1 27.0 161 466-633 259-476 (496)
332 2ism_A Putative oxidoreductase 94.7 2.7 9.4E-05 39.0 23.1 65 552-619 269-337 (352)
333 3qhy_B Beta-lactamase inhibito 94.1 3 0.0001 37.2 25.9 238 346-615 26-271 (282)
334 2g8s_A Glucose/sorbosone dehyd 93.6 4.6 0.00016 37.5 23.5 74 550-629 270-351 (353)
335 3pbp_A Nucleoporin NUP82; beta 93.0 6.1 0.00021 37.1 17.6 140 435-577 40-208 (452)
336 3a9g_A Putative uncharacterize 92.8 6 0.0002 36.7 26.6 67 552-619 260-334 (354)
337 3qhy_B Beta-lactamase inhibito 92.7 5.1 0.00018 35.7 22.2 177 384-582 24-208 (282)
338 3s25_A Hypothetical 7-bladed b 92.5 5.7 0.0002 35.8 24.3 146 436-615 88-240 (302)
339 3sbq_A Nitrous-oxide reductase 91.7 10 0.00036 37.0 23.4 261 355-631 72-407 (638)
340 4d9s_A UVB-resistance protein 87.8 19 0.00064 34.1 33.8 71 458-528 278-357 (406)
341 2ism_A Putative oxidoreductase 86.6 20 0.00067 33.1 21.2 30 599-633 269-298 (352)
342 4gq2_M Nucleoporin NUP120; bet 86.2 13 0.00043 40.0 14.9 38 552-589 237-274 (950)
343 1tl2_A L10, protein (tachylect 85.5 16 0.00053 30.9 14.9 151 458-628 42-206 (236)
344 1cru_A Protein (soluble quinop 85.3 15 0.00052 35.4 13.8 112 501-617 28-163 (454)
345 1tl2_A L10, protein (tachylect 84.1 0.95 3.2E-05 38.0 4.0 71 551-630 41-114 (236)
346 1cru_A Protein (soluble quinop 83.2 34 0.0012 32.9 19.8 107 458-570 28-163 (454)
347 3kci_A Probable E3 ubiquitin-p 82.1 34 0.0012 32.1 28.6 180 347-528 110-345 (389)
348 3q6k_A 43.2 kDa salivary prote 81.7 33 0.0011 31.8 18.4 150 477-631 124-305 (381)
349 2g8s_A Glucose/sorbosone dehyd 81.7 33 0.0011 31.7 17.1 110 459-570 20-149 (353)
350 3zwu_A Alkaline phosphatase PH 79.9 5.5 0.00019 39.7 8.3 58 554-615 479-548 (592)
351 3s25_A Hypothetical 7-bladed b 78.8 36 0.0012 30.5 29.1 207 349-582 21-256 (302)
352 3das_A Putative oxidoreductase 77.7 43 0.0015 30.7 18.3 107 457-569 32-158 (347)
353 4gq2_M Nucleoporin NUP120; bet 77.2 37 0.0013 36.5 14.3 36 501-536 237-274 (950)
354 4d9s_A UVB-resistance protein 77.0 50 0.0017 31.1 33.7 181 346-528 70-305 (406)
355 3mvd_K Regulator of chromosome 76.8 52 0.0018 31.2 35.9 180 346-528 129-374 (423)
356 3a9g_A Putative uncharacterize 76.7 47 0.0016 30.6 23.4 32 598-633 259-297 (354)
357 3f7f_A Nucleoporin NUP120; nuc 75.9 73 0.0025 32.5 16.0 38 500-537 222-259 (729)
358 3f7f_A Nucleoporin NUP120; nuc 74.1 13 0.00044 37.8 9.1 79 30-114 165-254 (729)
359 4fhn_B Nucleoporin NUP120; pro 74.1 1.1E+02 0.0036 33.9 17.3 38 552-589 239-276 (1139)
360 4a9v_A PHOX; hydrolase, beta-p 72.2 13 0.00043 36.7 8.3 60 552-615 477-548 (592)
361 2wg3_C Hedgehog-interacting pr 71.2 34 0.0012 33.0 11.2 125 502-632 16-186 (463)
362 3sbq_A Nitrous-oxide reductase 67.6 5.2 0.00018 39.0 4.5 75 504-582 329-409 (638)
363 3kci_A Probable E3 ubiquitin-p 65.0 91 0.0031 29.1 26.8 108 144-251 54-186 (389)
364 1a12_A RCC1, regulator of chro 63.0 1E+02 0.0035 29.0 33.2 178 346-528 113-365 (413)
365 3mvd_K Regulator of chromosome 58.0 1.3E+02 0.0043 28.5 34.1 140 346-485 181-374 (423)
366 3q6k_A 43.2 kDa salivary prote 55.9 1.3E+02 0.0044 27.9 19.5 171 437-615 124-341 (381)
367 1suu_A DNA gyrase subunit A; t 55.2 1.2E+02 0.004 27.3 20.1 186 425-620 7-223 (312)
368 3uc1_A DNA gyrase subunit A; D 54.3 1.3E+02 0.0043 27.3 23.7 103 425-529 108-229 (327)
369 4hvt_A Ritya.17583.B, post-pro 49.9 2.3E+02 0.008 29.1 16.4 59 570-631 318-380 (711)
370 3uc1_A DNA gyrase subunit A; D 49.5 1.5E+02 0.0052 26.8 23.8 112 466-581 109-228 (327)
371 3no0_A DNA gyrase subunit A; D 49.0 1.4E+02 0.0047 26.2 14.4 144 466-620 80-236 (276)
372 2wg3_C Hedgehog-interacting pr 45.6 2.1E+02 0.0073 27.4 19.0 30 342-371 14-44 (463)
373 4fhn_B Nucleoporin NUP120; pro 44.4 2.3E+02 0.008 31.2 13.3 30 465-494 248-277 (1139)
374 3of7_A Regulator of chromosome 43.8 2.3E+02 0.0078 27.3 29.9 185 344-528 148-405 (473)
375 1a12_A RCC1, regulator of chro 40.5 2.4E+02 0.0081 26.5 29.3 183 345-528 60-314 (413)
376 3of7_A Regulator of chromosome 38.6 2.7E+02 0.0094 26.7 28.6 185 344-528 67-341 (473)
377 4hvt_A Ritya.17583.B, post-pro 36.8 3.7E+02 0.013 27.6 20.3 222 348-583 136-431 (711)
378 1suu_A DNA gyrase subunit A; t 36.6 2.3E+02 0.008 25.3 22.4 176 351-529 6-232 (312)
379 1wp5_A Topoisomerase IV; broke 35.6 2.5E+02 0.0085 25.3 19.0 186 424-631 3-224 (323)
380 3das_A Putative oxidoreductase 34.6 2.7E+02 0.0092 25.4 27.0 71 342-412 32-116 (347)
381 3hx6_A Type 4 fimbrial biogene 32.4 3.8E+02 0.013 26.5 16.8 58 572-633 223-285 (570)
382 3no0_A DNA gyrase subunit A; D 29.5 2.9E+02 0.0098 24.2 17.2 103 425-529 79-197 (276)
383 1zvt_A Topoisomerase IV subuni 27.8 2.9E+02 0.01 23.8 12.3 144 468-620 4-155 (256)
384 3mez_B Mannose-specific lectin 24.7 2E+02 0.0069 20.8 10.6 25 466-490 24-48 (113)
385 1b2p_A Protein (lectin); manno 24.7 2.1E+02 0.0071 21.0 7.1 9 570-578 69-77 (119)
386 1q47_A Semaphorin 3A; beta pro 22.9 1.4E+02 0.0047 29.0 6.2 57 563-622 422-486 (495)
387 3mez_B Mannose-specific lectin 22.1 2.3E+02 0.0078 20.5 7.0 13 602-614 60-72 (113)
388 1zi0_A DNA gyrase subunit A; b 20.9 4.4E+02 0.015 23.4 23.3 230 393-632 3-277 (307)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-63 Score=512.43 Aligned_cols=529 Identities=30% Similarity=0.473 Sum_probs=427.3
Q ss_pred CCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018 16 KDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR 93 (635)
Q Consensus 16 ~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~ 93 (635)
+++..|+||.+.| +||+|| |||++||+++.+ ..+.||| .+++++++|.+|.+.| ++++|+ +++
T Consensus 7 ~e~~~L~GH~~~V-~~~a~s----pdg~~las~~~d--------~~v~iWd-~~~~~~~~l~gh~~~V-~~l~fspdg~~ 71 (577)
T 2ymu_A 7 KERNRLEAHSSSV-RGVAFS----PDGQTIASASDD--------KTVKLWN-RNGQLLQTLTGHSSSV-WGVAFSPDGQT 71 (577)
T ss_dssp CEEEEECCCSSCE-EEEEEC----TTSSCEEEEETT--------SEEEEEC-TTSCEEEEEECCSSCE-EEEEECTTSSE
T ss_pred EEeeEECCCCCcE-EEEEEC----CCCCEEEEEeCC--------CEEEEEE-CCCCEEEEEeCCCCCE-EEEEECCCCCE
Confidence 3446699999999 999999 999999999764 4455799 5788999999999998 999999 999
Q ss_pred EEEeeCCCcEEEEECCCCcEE---------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018 94 IVSGSDDNTLKVWSATTGKCL---------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-- 150 (635)
Q Consensus 94 l~s~~~d~~v~vWd~~~~~~l---------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-- 150 (635)
||+++.|++|+|||.. ++.+ +++++.|+.+++|+... .....+.+|...|.++.+
T Consensus 72 las~~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 72 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP 149 (577)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeec
Confidence 9999999999999964 4433 88999999999999754 456677789999999999
Q ss_pred cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEE
Q psy18018 151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230 (635)
Q Consensus 151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 230 (635)
++..+++++.++.+++|+...............+......+++..+++++.|+.|++||. +++.+..+.+|...|.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 150 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred CCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence 888999999999999999766554444444455566666677889999999999999995 6788899999999999999
Q ss_pred ee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018 231 MA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA 308 (635)
Q Consensus 231 ~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (635)
|+ +..|++++.|+.|++|+....... ........+..+.|.|++..+..
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~~~~~-----------------------------~~~~~~~~v~~v~~~~d~~~l~~ 279 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNGQLLQ-----------------------------TLTGHSSSVNGVAFRPDGQTIAS 279 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTSCEEE-----------------------------EECCCSSCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCEEE-----------------------------EEecCCCCEEEEEEcCCCCEEEE
Confidence 95 789999999999999996543211 01112334555667777666555
Q ss_pred cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeE
Q psy18018 309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 388 (635)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~ 388 (635)
+.......+........ . ....+......++++|++.++++++.|+.|++|+.. +..+..+.+|...+.+
T Consensus 280 ~~~d~~i~~w~~~~~~~-------~--~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~ 349 (577)
T 2ymu_A 280 ASDDKTVKLWNRNGQLL-------Q--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWG 349 (577)
T ss_dssp EETTSCEEEEETTSCEE-------E--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred EeCCCEEEEEeCCCcEE-------E--EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEE
Confidence 44333333322211110 0 011223345567899999999999999999999976 5566788899999999
Q ss_pred EEEe--CCEEEEEeCCCcEEEEEccCCc--------ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCcc
Q psy18018 389 MELR--NNILVSGNADSTVKVWDIVSGT--------KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 458 (635)
Q Consensus 389 l~~~--~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 458 (635)
++++ +..+++++.|+.+++|+..... .......++|++++|++++.|+.|++||. +++.+..+.+|...
T Consensus 350 ~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 428 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC
Confidence 9997 6799999999999999965321 11222347899999999999999999995 57888899999999
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018 459 TSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP 534 (635)
Q Consensus 459 v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~ 534 (635)
|.+++++ +++|++++.|+.|++||. +++.+..+.. |...|.+++| ++++|++++.|+.|++||. +++.+..
T Consensus 429 v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~ 503 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 503 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 9999884 669999999999999996 4677778877 8899999999 6899999999999999995 5666555
Q ss_pred eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEE
Q psy18018 535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV 614 (635)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~ 614 (635)
+.. |...|++++|+||+++||+++.|+.|++||. +++++..+ .+|.++|++++|+|||++|++
T Consensus 504 ~~~-----------h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-----~~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 504 LTG-----------HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EEC-----------CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-----ECCSSCEEEEEECTTSSCEEE
T ss_pred EeC-----------CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEE
Confidence 543 7889999999999999999999999999996 68888888 579999999999999999999
Q ss_pred ccCCCeeEeEEE
Q psy18018 615 GSRNGTEETKLL 626 (635)
Q Consensus 615 ~~~dg~~~~~l~ 626 (635)
++.|++ +++|
T Consensus 567 ~~~D~~--i~~W 576 (577)
T 2ymu_A 567 ASSDKT--VKLW 576 (577)
T ss_dssp EETTSC--EEEE
T ss_pred EeCCCE--EEEe
Confidence 999998 4554
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-62 Score=506.91 Aligned_cols=505 Identities=16% Similarity=0.180 Sum_probs=408.5
Q ss_pred eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCC--CceeeccCcceE
Q psy18018 7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKD--PKVLKGHDDHVI 84 (635)
Q Consensus 7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~--~~~l~~h~~~vi 84 (635)
++.|+......++.|.||.+.| ++++|| |||++||+++.++ .+.|||..+++. ...+.+|.+.|
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v-~~~~~s----pdg~~lasg~~d~--------~v~lWd~~~~~~~~~~~~~~~~~~v- 106 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQT-TVAKTS----PSGYYCASGDVHG--------NVRIWDTTQTTHILKTTIPVFSGPV- 106 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCE-EEEEEC----TTSSEEEEEETTS--------EEEEEESSSTTCCEEEEEECSSSCE-
T ss_pred EEEecCCCcccCeEecCCCCce-EEEEEC----CCCcEEEEEeCCC--------CEEEeECCCCcceeeEeecccCCce-
Confidence 4678877778889999999998 999999 9999999998754 445699876543 45788999988
Q ss_pred EEEEEc--CCEEEEeeCC----CcEEEEECCC--------------------CcEEEEEeeCCCcEEEEeCCCCeEEEEe
Q psy18018 85 TCLQFS--GSRIVSGSDD----NTLKVWSATT--------------------GKCLLVSGSRDATLRVWHIESGECLHVL 138 (635)
Q Consensus 85 ~~~~~s--~~~l~s~~~d----~~v~vWd~~~--------------------~~~ll~~~~~dg~i~vwd~~~~~~~~~l 138 (635)
.+++|+ +++||+++.+ +.|++||... +...+++|+.|++|++||..++++...+
T Consensus 107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l 186 (611)
T 1nr0_A 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186 (611)
T ss_dssp EEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence 999999 9999998875 4788887532 2235999999999999999999999999
Q ss_pred eCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc-------ccc-eeEEeeeccCCCEEEEEeCCCcEEEE
Q psy18018 139 VGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL-------QET-EVELSHGYALRSRIVSGSDDNTLKVW 208 (635)
Q Consensus 139 ~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~l~~~~~dg~i~vw 208 (635)
.+|...|.+++| ++++|++++.|++|++||+.+++.+..+. .+. .+....+.+++.+|++++.|++|++|
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999999999 89999999999999999999988776663 343 44445555677899999999999999
Q ss_pred ECCCCeEEEEEeCC---CCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018 209 SATTGKCLRTLIGH---TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285 (635)
Q Consensus 209 d~~~~~~~~~~~~h---~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (635)
|+.+++++.++..+ ...+..+.++++.+++++.|+.+++|+........
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~---------------------------- 318 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ---------------------------- 318 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE----------------------------
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce----------------------------
Confidence 99999999888643 44677888899999999999999999976532100
Q ss_pred eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365 (635)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 365 (635)
....+......++|+|++++|++++.|+.|
T Consensus 319 --------------------------------------------------~~~gh~~~v~~l~~spdg~~l~s~s~D~~v 348 (611)
T 1nr0_A 319 --------------------------------------------------VRYGHNKAITALSSSADGKTLFSADAEGHI 348 (611)
T ss_dssp --------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred --------------------------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence 001122345567899999999999999999
Q ss_pred EEEEccCCceEEee-eCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcc------------eeEEEEEeeCCcEEEE
Q psy18018 366 RVWEAESGNLRHTL-MGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTK------------KLMFRICLFDGVHVVS 431 (635)
Q Consensus 366 ~v~~~~~~~~~~~~-~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~l~~ 431 (635)
++||+.+++....+ .+|...+.+++++ +..+++++.|+.+++|+...... ......+++++..+++
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 99999999887766 6799999999997 66899999999999999876432 1223346788877777
Q ss_pred EeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee--EEecCCCcccccEEEEEe
Q psy18018 432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL--QTLSGRNKHQSAVTCLQF 507 (635)
Q Consensus 432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~ 507 (635)
+ .++.+++|+ .++ ...+. |...+.++++ +++++++|+.|++|++||+.+++.. .. . .|...|++++|
T Consensus 429 ~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~---~h~~~v~~v~f 499 (611)
T 1nr0_A 429 A-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I---VHPAEITSVAF 499 (611)
T ss_dssp E-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E---ECSSCEEEEEE
T ss_pred E-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c---CCCCceEEEEE
Confidence 7 567899998 344 44454 7777888877 5779999999999999999876532 22 2 38889999999
Q ss_pred --cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018 508 --NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF 584 (635)
Q Consensus 508 --~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~ 584 (635)
++++|++++.|++|++|++.+ ++...... ...|...|.+++|+||+++||+|+.|++|++||+.+++.
T Consensus 500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~---------~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNS---------WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---------CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---------eeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 699999999999999999987 44322100 112788999999999999999999999999999998753
Q ss_pred -E-EeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 585 -I-RNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 585 -~-~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
+ ..+ .+| ...|.+++|+||++ |++++.|++ +++|.++
T Consensus 571 ~~~~~~-----~~h~~~~v~~v~fs~d~~-l~s~~~D~~--i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIK-----GAHAMSSVNSVIWLNETT-IVSAGQDSN--IKFWNVP 610 (611)
T ss_dssp CCEEET-----TSSTTSCEEEEEEEETTE-EEEEETTSC--EEEEECC
T ss_pred ccchhh-----ccCcccCeeEEEEcCCCE-EEEecCCCC--EEEEecc
Confidence 2 333 467 78999999999999 999999999 6777654
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-59 Score=483.17 Aligned_cols=484 Identities=17% Similarity=0.188 Sum_probs=382.7
Q ss_pred ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCC
Q psy18018 23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDD 100 (635)
Q Consensus 23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d 100 (635)
.+.+.+ .+++|| |||++||++.. ..+.+||..+++....+.+|.+.| ++++|+ |++||+|+.|
T Consensus 16 ~~~g~~-~~~~~s----pdg~~l~~~~~---------~~v~l~~~~~~~~~~~~~~h~~~v-~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 16 TARGTA-VVLGNT----PAGDKIQYCNG---------TSVYTVPVGSLTDTEIYTEHSHQT-TVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp CCTTCC-CCCEEC----TTSSEEEEEET---------TEEEEEETTCSSCCEEECCCSSCE-EEEEECTTSSEEEEEETT
T ss_pred cccCce-eEEeeC----CCCCEEEeCCC---------CEEEEecCCCcccCeEecCCCCce-EEEEECCCCcEEEEEeCC
Confidence 335556 689999 99999999863 245579999999999999999998 999999 9999999999
Q ss_pred CcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC----CeEEEEeCCCccc
Q psy18018 101 NTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD----YMVKIWNPDTEEC 174 (635)
Q Consensus 101 ~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d----g~v~iwd~~~~~~ 174 (635)
++|+|||+.+++ ......+.+|.++|.+++| ++++|++++.+ +.|++|| .++.
T Consensus 81 ~~v~lWd~~~~~-------------------~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~ 139 (611)
T 1nr0_A 81 GNVRIWDTTQTT-------------------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTS 139 (611)
T ss_dssp SEEEEEESSSTT-------------------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCB
T ss_pred CCEEEeECCCCc-------------------ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCC
Confidence 999999987543 2345677899999999999 89999999875 4788887 4555
Q ss_pred eeeccccceeEEeeeccCC-C-EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecc
Q psy18018 175 LHAELQETEVELSHGYALR-S-RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSN 250 (635)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 250 (635)
...+..+...+..+.+.++ . +|++++.|++|++||..+++++.++.+|...|.+++|+ +++|++++.|++|++||.
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 6666777666666666654 3 69999999999999999999999999999999999994 789999999999999997
Q ss_pred cceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhh
Q psy18018 251 AERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330 (635)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (635)
.++.......
T Consensus 220 ~~g~~~~~~~---------------------------------------------------------------------- 229 (611)
T 1nr0_A 220 VDGTKTGVFE---------------------------------------------------------------------- 229 (611)
T ss_dssp TTCCEEEECB----------------------------------------------------------------------
T ss_pred CCCcEeeeec----------------------------------------------------------------------
Confidence 6543210000
Q ss_pred hhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCC---CcceeEEEEeCCEEEEEeCCCcEEE
Q psy18018 331 EAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH---QSLTSGMELRNNILVSGNADSTVKV 407 (635)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~s~~~dg~i~i 407 (635)
........+......++|+|++++|++++.|+.|++||+.+++.+..+..+ ......+.++++.+++++.|+.+++
T Consensus 230 -~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 230 -DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp -CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred -cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 000000112334556789999999999999999999999999988877653 3456777888999999999999999
Q ss_pred EEccCCccee---------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccEEEEEec-CCEEEEEeCCC
Q psy18018 408 WDIVSGTKKL---------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR-NNILVSGNADS 476 (635)
Q Consensus 408 wd~~~~~~~~---------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg 476 (635)
|+...++... ....++|++++|++++.|++|++||+.+++....+ .+|...+.++.+. +..+++++.|+
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~ 388 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT
T ss_pred EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCC
Confidence 9988764322 23357899999999999999999999999887766 5799999999985 45889999999
Q ss_pred cEEEEECCCCceeE------E---------e------------------cC----CCcccccEEEEEe--cCCEEEEEeC
Q psy18018 477 TVKVWDIVSGQCLQ------T---------L------------------SG----RNKHQSAVTCLQF--NSRFVITSSD 517 (635)
Q Consensus 477 ~i~iwd~~~~~~~~------~---------~------------------~~----~~~~~~~v~~~~~--~~~~l~~~~~ 517 (635)
.+++|+...+.... . + .. ...+...+.+++| |+++|++|+.
T Consensus 389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~ 468 (611)
T 1nr0_A 389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 468 (611)
T ss_dssp EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence 99999976532110 0 0 00 0013455778888 6999999999
Q ss_pred CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC-CceEEeeeeccCCCC
Q psy18018 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT-GEFIRNLVSLDSGGS 596 (635)
Q Consensus 518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~ 596 (635)
|++|++||+.+++.... ....|...|++++|+||+++|++++.|++|++||+.+ ++.+.... ...|
T Consensus 469 D~~v~lwd~~~~~~~~~----------~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~---~~~H 535 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEV----------KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---WTFH 535 (611)
T ss_dssp TSEEEEEEEETTEEEEE----------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC---CCCC
T ss_pred CCeEEEEEccCCceeee----------eccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee---eeec
Confidence 99999999987643211 1134788999999999999999999999999999988 55433211 1358
Q ss_pred CceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 597 GGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 597 ~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
...|++++|+|||++||+++.|++ ++||.+
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~--v~lW~~ 565 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNS--VIVWNM 565 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSC--EEEEET
T ss_pred ccceeEEEECCCCCEEEEEECCCc--EEEEEC
Confidence 999999999999999999999999 555544
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-59 Score=528.90 Aligned_cols=541 Identities=21% Similarity=0.329 Sum_probs=431.4
Q ss_pred CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018 18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIV 95 (635)
Q Consensus 18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~ 95 (635)
...+.||.+.| +|++|| |+|+++|+++.++ .+.+||..+++.+..+.+|.+.| .+++|+ +++||
T Consensus 608 ~~~~~~h~~~v-~~~~~s----~~~~~l~s~~~d~--------~i~vw~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 608 RLVVRPHTDAV-YHACFS----QDGQRIASCGADK--------TLQVFKAETGEKLLDIKAHEDEV-LCCAFSSDDSYIA 673 (1249)
T ss_dssp SEEECCCSSCE-EEEEEC----TTSSEEEEEETTS--------CEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEE
T ss_pred eEEEecccccE-EEEEEC----CCCCEEEEEeCCC--------eEEEEECCCCCEEEEeccCCCCE-EEEEEecCCCEEE
Confidence 35778999999 999999 9999999998654 44569999999999999999988 999999 89999
Q ss_pred EeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018 96 SGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-- 150 (635)
Q Consensus 96 s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-- 150 (635)
+++.|++|++||+.+++.+ +++|+.||.|++||+++++++..+.+|.+.|++++|
T Consensus 674 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence 9999999999999988764 889999999999999999999999999999999999
Q ss_pred cCCEEEEEeCCCeEEEEeCCCccceeecc---------------------------------------------------
Q psy18018 151 DGKLVVSGAYDYMVKIWNPDTEECLHAEL--------------------------------------------------- 179 (635)
Q Consensus 151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------------------------------- 179 (635)
++++|++++.||+|++||+.+++......
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 89999999999999999998765433221
Q ss_pred -----ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccc
Q psy18018 180 -----QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAE 252 (635)
Q Consensus 180 -----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~ 252 (635)
+...+....+.+.+..+++++.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.+++|++..
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 11122233444567889999999999999999999999999999999999995 78999999999999999775
Q ss_pred eeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhh
Q psy18018 253 RILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEA 332 (635)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (635)
........ ... .....+.+....+.................
T Consensus 914 ~~~~~~~~--------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 954 (1249)
T 3sfz_A 914 VCKNSAIV--------LKQ----------------------EIDVVFQENETMVLAVDNIRGLQLIAGKTG--------- 954 (1249)
T ss_dssp HHSCCSSS--------EEE----------------------EEEEEEETTEEEEEEEESSSSEEEEEESSC---------
T ss_pred cceeeeec--------ccc----------------------eeeEEEcCCCcEEEEecCCcceEEEecCcc---------
Confidence 32211000 000 000001111110000000000000000000
Q ss_pred hhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEc
Q psy18018 333 ATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI 410 (635)
Q Consensus 333 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~ 410 (635)
............++++|+++++++|+.+|.|++|++.+++....+.+|...|.+++|+ ++++++++.||.|++||+
T Consensus 955 --~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 955 --QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp --CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred --eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 0001122345678899999999999999999999999999999999999999999997 679999999999999999
Q ss_pred cCCccee--------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEE
Q psy18018 411 VSGTKKL--------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKV 480 (635)
Q Consensus 411 ~~~~~~~--------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i 480 (635)
.+++... ....+++ +..+++++.|+.+++||+.+++....+.+|...|.++++ +++++++++.|+.|++
T Consensus 1033 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A 1033 QTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp TTTEEECCBCCSSCEEEEEECS-SSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred CCCceEEEecCCCcEEEEEEcC-CCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 8865432 2223445 556889999999999999999999999999999998887 4669999999999999
Q ss_pred EECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
||+.+++++..+.+ |...|++++| ++++|++++.||.|++||+.+++....+..... ......|...|++++|
T Consensus 1112 wd~~~~~~~~~l~~---h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A 1112 WSFDLLSPLHELKG---HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp ECSSSSSCSBCCCC---CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEE
T ss_pred EECCCcceeeeecc---CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEE
Confidence 99999998888877 8899999999 689999999999999999999987665422110 1112347889999999
Q ss_pred cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 559 QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 559 s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+||+++|++++ |.|++||+.+++.+..+ ..+...|++++|+|||++|++++.||. ++.|++
T Consensus 1187 s~dg~~l~s~~--g~v~vwd~~~g~~~~~~-----~~~~~~i~~~~~s~dg~~l~~~~~dg~----v~vw~l 1247 (1249)
T 3sfz_A 1187 SPDSKTLVSAG--GYLKWWNVATGDSSQTF-----YTNGTNLKKIHVSPDFRTYVTVDNLGI----LYILQV 1247 (1249)
T ss_dssp CTTSSCEEEES--SSEEEBCSSSCBCCCCC-----CCSSCCCCCCEECSSSCCEEEECTTCC----EEEECC
T ss_pred CCCCCEEEECC--CeEEEEECCCCceeeee-----eccCCcccEEEECCCCCEEEEecCCcE----EEEEee
Confidence 99999999986 89999999999998877 567889999999999999999999998 666654
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-57 Score=470.55 Aligned_cols=457 Identities=32% Similarity=0.515 Sum_probs=384.5
Q ss_pred eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE
Q psy18018 6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT 85 (635)
Q Consensus 6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~ 85 (635)
.++.|+ ...+.++.|.||.+.| ++|+|| |||++||+++.++ .+.+||. +++++..+.+|.+.| .
T Consensus 39 ~v~iWd-~~~~~~~~l~gh~~~V-~~l~fs----pdg~~las~~~d~--------~i~vWd~-~~~~~~~~~~~~~~v-~ 102 (577)
T 2ymu_A 39 TVKLWN-RNGQLLQTLTGHSSSV-WGVAFS----PDGQTIASASDDK--------TVKLWNR-NGQLLQTLTGHSSSV-R 102 (577)
T ss_dssp EEEEEC-TTSCEEEEEECCSSCE-EEEEEC----TTSSEEEEEETTS--------CEEEEET-TSCEEEEECCCSSCE-E
T ss_pred EEEEEE-CCCCEEEEEeCCCCCE-EEEEEC----CCCCEEEEEeCCC--------EEEEEEC-CCCEEEEEECCCCCE-E
Confidence 467788 4566678999999999 999999 9999999988654 4456995 678889999999988 9
Q ss_pred EEEEc--CCEEEEeeCCCcEEEEECCCCcEE-------------------------------------------------
Q psy18018 86 CLQFS--GSRIVSGSDDNTLKVWSATTGKCL------------------------------------------------- 114 (635)
Q Consensus 86 ~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l------------------------------------------------- 114 (635)
+++|+ +++|++++.|+.+++|+.......
T Consensus 103 ~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (577)
T 2ymu_A 103 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 182 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSC
T ss_pred EEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcc
Confidence 99999 999999999999999997543221
Q ss_pred ------------EEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc
Q psy18018 115 ------------LVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ 180 (635)
Q Consensus 115 ------------l~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 180 (635)
+++++.|+.|++||. +++.+..+.+|...|.+++| ++++|++++.|+.|++||.. ++.+..+..
T Consensus 183 v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~ 260 (577)
T 2ymu_A 183 VWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 260 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC
T ss_pred eeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEec
Confidence 889999999999995 57888999999999999999 89999999999999999965 455555555
Q ss_pred cce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeec
Q psy18018 181 ETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAI 257 (635)
Q Consensus 181 ~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~ 257 (635)
+.. +....+.+++..+++++.|+.|++||. +++.+..+.+|...|++++++ ++.+++++.||.|++||........
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~ 339 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT 339 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE
Confidence 544 444445566789999999999999996 577888999999999999994 7899999999999999976532210
Q ss_pred cccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcc
Q psy18018 258 GQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHR 337 (635)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (635)
.
T Consensus 340 -------------------------------------------------------------------------------~ 340 (577)
T 2ymu_A 340 -------------------------------------------------------------------------------L 340 (577)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 0
Q ss_pred ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc
Q psy18018 338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK 415 (635)
Q Consensus 338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~ 415 (635)
..+......++++|+++++++++.+|.|++|+. +++.+..+.+|...|.+++|+ +++|++++.|+.|++||......
T Consensus 341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~ 419 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 419 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEE
T ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE
Confidence 111233445779999999999999999999995 578888999999999999997 67999999999999999653211
Q ss_pred --------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCC
Q psy18018 416 --------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 416 --------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 485 (635)
......++|++++|++++.|+.|++||. +++.+..+.+|...|.++++ ++++|++++.|+.|++||. +
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~ 497 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 497 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-T
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-C
Confidence 1122347899999999999999999996 57788899999999999988 4679999999999999995 6
Q ss_pred CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
++++..+.+ |...|++++| ++++|++++.|+.|++||. +++.+..+.. |...|++++|+||++
T Consensus 498 ~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~-----------h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 498 GQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-----------HSSSVWGVAFSPDGQ 562 (577)
T ss_dssp SCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC-----------CSSCEEEEEECTTSS
T ss_pred CCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC-----------CCCCEEEEEEcCCCC
Confidence 788888887 8899999999 6899999999999999996 4665555543 789999999999999
Q ss_pred EEEEecCCCeEEEEe
Q psy18018 564 FVITSSDDGTVKLWD 578 (635)
Q Consensus 564 ~l~~~~~d~~v~iwd 578 (635)
+|++++.|++|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.9e-58 Score=478.30 Aligned_cols=492 Identities=15% Similarity=0.207 Sum_probs=383.3
Q ss_pred ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC----CCCceeeccCcc-eEEEEEEc----CCE
Q psy18018 23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI----KDPKVLKGHDDH-VITCLQFS----GSR 93 (635)
Q Consensus 23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~----~~~~~l~~h~~~-vi~~~~~s----~~~ 93 (635)
.|.+.| ++++|| |+|++||++.. ..+.+||..++ +....+.+|.+. | ++++|+ +++
T Consensus 16 ~~~~~v-~~~~~s----pdg~~l~~~~~---------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 16 TQRNFT-THLSYD----PTTNAIAYPCG---------KSAFVRCLDDGDSKVPPVVQFTGHGSSVV-TTVKFSPIKGSQY 80 (615)
T ss_dssp CCTTCC-CCCEEE----TTTTEEEEEET---------TEEEEEECCSSCCSSCSEEEECTTTTSCE-EEEEECSSTTCCE
T ss_pred CccCce-eEEEEC----CCCCEEEEecC---------CeEEEEECCCCCCccccceEEecCCCceE-EEEEECcCCCCCE
Confidence 788888 999999 99999999872 24557999998 899999999998 7 999997 589
Q ss_pred EEEeeCCCcEEEEECCCC--------cEE---------------------EEEeeCC----CcEEEEeCCCCeEEEEeeC
Q psy18018 94 IVSGSDDNTLKVWSATTG--------KCL---------------------LVSGSRD----ATLRVWHIESGECLHVLVG 140 (635)
Q Consensus 94 l~s~~~d~~v~vWd~~~~--------~~l---------------------l~~~~~d----g~i~vwd~~~~~~~~~l~~ 140 (635)
||+++.||.|++||+.++ +.+ +++++.+ +.|.+|| +++.+..+.+
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~ 158 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG 158 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec
Confidence 999999999999999754 221 6777766 6788887 6788999999
Q ss_pred CCcceEEEEe--cCC-EEEEEeCCCeEEEEeCCCccceeeccccce----eEEeeeccC-CCEEEEEeCCCcEEEEECCC
Q psy18018 141 HLAAVRCVQY--DGK-LVVSGAYDYMVKIWNPDTEECLHAELQETE----VELSHGYAL-RSRIVSGSDDNTLKVWSATT 212 (635)
Q Consensus 141 h~~~v~~l~~--~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~ 212 (635)
|...|.+++| +++ .+++++.|+.|++||+.+++.+..+..+.. +......++ +.++++++.||.|++||+.+
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 9999999999 665 899999999999999999998888876655 444555566 68899999999999999999
Q ss_pred CeEEEEE-e---CCCCCeEEEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 213 GKCLRTL-I---GHTGGVWSSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 213 ~~~~~~~-~---~h~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
++.+..+ . +|...|.++.| +++++++++.||.|++||+.+..........
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------------------- 293 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD------------------------- 293 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC-------------------------
T ss_pred CCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-------------------------
Confidence 9999999 6 89999999999 6889999999999999998764321100000
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 367 (635)
..........+.+ +++.++++++.+|.|++
T Consensus 294 -------------------------------------------------~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 294 -------------------------------------------------KQQLGNQQVGVVA-TGNGRIISLSLDGTLNF 323 (615)
T ss_dssp -------------------------------------------------TTCGGGCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred -------------------------------------------------CCcccCceeEEEe-CCCCeEEEEECCCCEEE
Confidence 0000011112223 36677777777777777
Q ss_pred EEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc---CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC-
Q psy18018 368 WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV---SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA- 443 (635)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~- 443 (635)
||+.+++.+..+.+|...|.++++ ++ +++++.||.|++|++. .........+..+++..+++++.|+.+++|++
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred EECCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcc
Confidence 777776777777777777777777 66 6666666666666654 11111111111134455555555555555554
Q ss_pred ---------------------------------CCCceeeeeccCCccEEEEEecCCEEEEEeC-CCcEEEEECCCCcee
Q psy18018 444 ---------------------------------ESGNLRHTLMGHQSLTSGMELRNNILVSGNA-DSTVKVWDIVSGQCL 489 (635)
Q Consensus 444 ---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~ 489 (635)
.+++.+..+. |...+.+++++++++++++. |+.|++||+.+++..
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~ 480 (615)
T 1pgu_A 402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 480 (615)
T ss_dssp EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc
Confidence 4566666555 77889999999999999999 999999999987665
Q ss_pred -EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC------
Q psy18018 490 -QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF------ 560 (635)
Q Consensus 490 -~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------ 560 (635)
..+.. |...|++++| ++++|++++.||.|++||+.+++.+..+.. .|...|++++|+|
T Consensus 481 ~~~~~~---~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 481 FDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA----------FRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EECSSC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC----------CCSSCEEEEEECCCC----
T ss_pred ccccCC---ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec----------CCCCceeEEEEcCcccccc
Confidence 34443 8899999999 799999999999999999999987766543 1688999999999
Q ss_pred ----CCeEEEEecCCCeEEEEeCCCC-ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 561 ----NSRFVITSSDDGTVKLWDVKTG-EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 561 ----~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
++++|++++.||.|++||+.++ +.+..+ .+|...|++++|+||++ |++++.||. +++|.++.
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~-l~s~~~d~~--v~iw~~~~ 614 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----NAHKDGVNNLLWETPST-LVSSGADAC--IKRWNVVL 614 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----TSSTTCEEEEEEEETTE-EEEEETTSC--EEEEEEC-
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhh-----hcCccceEEEEEcCCCC-eEEecCCce--EEEEeeec
Confidence 9999999999999999999998 677777 57899999999999999 999999998 56665543
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-52 Score=447.81 Aligned_cols=518 Identities=13% Similarity=0.106 Sum_probs=372.3
Q ss_pred ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc-CCEEEEe
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS-GSRIVSG 97 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s-~~~l~s~ 97 (635)
....||.+.| +|++|+ |+|++||+|+.++ .+.+||....+....+ .|...| .+++|+ +++|+++
T Consensus 11 ~~~~gh~~~V-~~lafs----pdg~~lAsgs~Dg--------~I~lw~~~~~~~~~~~-~~~~~V-~~l~fspg~~L~S~ 75 (902)
T 2oaj_A 11 TNKYGMSSKP-IAAAFD----FTQNLLAIATVTG--------EVHIYGQQQVEVVIKL-EDRSAI-KEMRFVKGIYLVVI 75 (902)
T ss_dssp EEEEECSSCE-EEEEEE----TTTTEEEEEETTS--------EEEEECSTTCEEEEEC-SSCCCE-EEEEEETTTEEEEE
T ss_pred ccccCCCCCc-EEEEEC----CCCCEEEEEeCCC--------EEEEEeCCCcEEEEEc-CCCCCE-EEEEEcCCCEEEEE
Confidence 3456999999 999999 9999999998754 4446998877665444 466777 999999 8899999
Q ss_pred eCCCcEEEEECCCCcEE--------------------EEEeeCCCcEEEEeCCCCeEE-----------EEeeCCCcceE
Q psy18018 98 SDDNTLKVWSATTGKCL--------------------LVSGSRDATLRVWHIESGECL-----------HVLVGHLAAVR 146 (635)
Q Consensus 98 ~~d~~v~vWd~~~~~~l--------------------l~~~~~dg~i~vwd~~~~~~~-----------~~l~~h~~~v~ 146 (635)
+.|++|++||+.+++.+ +++|+.||.|++||+++++.. ..+.+|.++|+
T Consensus 76 s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV 155 (902)
T ss_dssp ETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred ECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence 99999999999988764 899999999999999988764 23468999999
Q ss_pred EEEe---cCCEEEEEeCCCeEEEEeCCCccceeecccc-------------------ceeEEeeeccCCCEEEEEeCCCc
Q psy18018 147 CVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQE-------------------TEVELSHGYALRSRIVSGSDDNT 204 (635)
Q Consensus 147 ~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~dg~ 204 (635)
+++| ++..|++++.||.| +||+.+++.+..+..+ ..+....+.+++.+|++++.||.
T Consensus 156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 9999 34689999999999 9999999877666543 33555556667889999999999
Q ss_pred EEEEECCCCeEEEE--E---eC-------------CCCCeEEEEee----C---CEEEEeeCc-----eeEEEeccccee
Q psy18018 205 LKVWSATTGKCLRT--L---IG-------------HTGGVWSSQMA----G---NIIISGSTD-----RTLKGWSNAERI 254 (635)
Q Consensus 205 i~vwd~~~~~~~~~--~---~~-------------h~~~v~~~~~~----~---~~l~s~~~d-----g~i~~w~~~~~~ 254 (635)
|++||+.+++++.. + .+ |..+|.+++|. + ..+++++.| +.+.+|++....
T Consensus 235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~ 314 (902)
T 2oaj_A 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP 314 (902)
T ss_dssp EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC
Confidence 99999999988764 2 12 34579999993 2 467777665 378888743210
Q ss_pred eeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhh
Q psy18018 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT 334 (635)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (635)
.. ... ....+...-.... ...
T Consensus 315 ~~-----~~~------------------------------------s~~~~~~~~~~~~------------------~~~ 335 (902)
T 2oaj_A 315 RY-----SIT------------------------------------SYEGMKNYYANPK------------------QMK 335 (902)
T ss_dssp CG-----GGC------------------------------------CHHHHHHHHHSCS------------------EEE
T ss_pred Cc-----ccc------------------------------------chhhhhhhhcCcc------------------ceE
Confidence 00 000 0000000000000 000
Q ss_pred hccccccCCCceEEEE----------ecCcEEEEecCCCeEEEEEccCCceEEe-------eeCCCcceeEE--------
Q psy18018 335 LHRNKKTHVPDLFGFQ----------FDGVHVVSGSLDTSIRVWEAESGNLRHT-------LMGHQSLTSGM-------- 389 (635)
Q Consensus 335 ~~~~~~~~~~~~~~~s----------~~~~~l~~~~~dg~i~v~~~~~~~~~~~-------~~~~~~~v~~l-------- 389 (635)
............+.+. .+...+++++.||.|++|++.++..... +..|...|+++
T Consensus 336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~ 415 (902)
T 2oaj_A 336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK 415 (902)
T ss_dssp EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence 0000000011111111 1345788888999999999877654322 22333444444
Q ss_pred --------------------------EEe--CCEEEEEeCCCcEEEEEccCCcc--------------------eeEEEE
Q psy18018 390 --------------------------ELR--NNILVSGNADSTVKVWDIVSGTK--------------------KLMFRI 421 (635)
Q Consensus 390 --------------------------~~~--~~~l~s~~~dg~i~iwd~~~~~~--------------------~~~~~~ 421 (635)
+|+ ++.|++++.|++|++||+.++.. ......
T Consensus 416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE
Confidence 333 56999999999999999876532 123445
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCc---------------------------------------------eeeeeccCC
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGN---------------------------------------------LRHTLMGHQ 456 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~---------------------------------------------~~~~~~~~~ 456 (635)
++|++++|++|+.|++|++|++.+++ ++..+.+|.
T Consensus 496 fspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~ 575 (902)
T 2oaj_A 496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK 575 (902)
T ss_dssp EETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS
T ss_pred ecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC
Confidence 89999999999999999999998662 366788899
Q ss_pred ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeE--EecCCC-cccccEEEEEec----------CCEEEEEeCCCcE
Q psy18018 457 SLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQ--TLSGRN-KHQSAVTCLQFN----------SRFVITSSDDGTV 521 (635)
Q Consensus 457 ~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~~----------~~~l~~~~~d~~i 521 (635)
+.|+++++ ++ +||+|+.|++|++||+++...+. .+.... .|...|++++|+ +++|++|+.|++|
T Consensus 576 ~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 576 GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 99999998 46 99999999999999998877654 222222 488999999997 4699999999999
Q ss_pred EEEEC---CCCceeeeeccceecCceeEEeccCceeccc-c----------------------cCCCeEEEEecCCCeEE
Q psy18018 522 KLWDV---KTGEFSTPLMSSFILNPFYFLIYSQPLLCPH-L----------------------QFNSRFVITSSDDGTVK 575 (635)
Q Consensus 522 ~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~----------------------s~~~~~l~~~~~d~~v~ 575 (635)
++||+ .+|+....+..+... .|..+|.+++ | .+++.+|+++ +..|+
T Consensus 655 ~~wd~~p~~~g~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir 726 (902)
T 2oaj_A 655 ITYKILPASGGKFDVQLMDITNV------TSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIR 726 (902)
T ss_dssp EEEEEEECGGGCEEEEEEEEEEC------CSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEE
T ss_pred EEEEEecCCCCcEEEEecCceec------CCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceE
Confidence 99999 788877776654321 1123333332 2 2667776665 77899
Q ss_pred EEeCCCCceEEeeeeccCCCCCceEEEE---E------eCCCCeEEEEccCCCeeEeEEEE
Q psy18018 576 LWDVKTGEFIRNLVSLDSGGSGGVVWRI---R------ASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~~~~i~~l---~------~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
||++.++++++.. ..+.-.+.++ . |++++..|++++.||. +++|.
T Consensus 727 ~~~~~~~k~~~k~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~--i~~~s 780 (902)
T 2oaj_A 727 LITLGKSKSTHKG-----FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH--LRVFT 780 (902)
T ss_dssp EECTTCCCEEEEE-----CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE--EEEEE
T ss_pred EEeCccccceeeE-----cccceeeeEEEEEEeccccccccCceEEEEEeCCCc--EEEEE
Confidence 9999999988776 2444666776 6 8899999999999999 55654
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-51 Score=429.01 Aligned_cols=493 Identities=15% Similarity=0.169 Sum_probs=382.0
Q ss_pred eeeeecCCC----CCCccccccccc-eEEEEEecCCCCC--CCceeecCCcchheeeccceeeeeeecCCC--------C
Q psy18018 7 EINWRTRPI----KDPKVLKGHDDH-VITCLQFSGKSFP--CESFIRSSSPWKALFMSHRSVEINWRTRPI--------K 71 (635)
Q Consensus 7 ~~~~~~~~~----~~~~~l~gh~~~-vi~~~~~s~~~~~--~~~~la~~~~~~~~~~~~~~~~~iwd~~~~--------~ 71 (635)
++.|+.... +..+.|.||.+. | ++++|+ | +|++||+++.++ .+.+||..++ +
T Consensus 41 v~v~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~s----p~~~~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~ 107 (615)
T 1pgu_A 41 AFVRCLDDGDSKVPPVVQFTGHGSSVV-TTVKFS----PIKGSQYLCSGDESG--------KVIVWGWTFDKESNSVEVN 107 (615)
T ss_dssp EEEEECCSSCCSSCSEEEECTTTTSCE-EEEEEC----SSTTCCEEEEEETTS--------EEEEEEEEEEGGGTEEEEE
T ss_pred EEEEECCCCCCccccceEEecCCCceE-EEEEEC----cCCCCCEEEEecCCC--------EEEEEeCCCCccccccccc
Confidence 456776666 778899999999 8 999999 8 999999998654 4456999754 6
Q ss_pred CCceeeccCcceEEEEEEc--CCEEEEeeCC----CcEEEEECCC--------------------CcEEEEEeeCCCcEE
Q psy18018 72 DPKVLKGHDDHVITCLQFS--GSRIVSGSDD----NTLKVWSATT--------------------GKCLLVSGSRDATLR 125 (635)
Q Consensus 72 ~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d----~~v~vWd~~~--------------------~~~ll~~~~~dg~i~ 125 (635)
.+..+.+|...+ .+++|+ +++|++++.+ +.|.+||... ++.++++++.|+.|+
T Consensus 108 ~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 108 VKSEFQVLAGPI-SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp EEEEEECCSSCE-EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred ccchhhcccccE-EEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 778889999988 999999 9999999988 6888888432 112589999999999
Q ss_pred EEeCCCCeEEEEeeCCCc---ceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccceeec-c---ccc-eeEEeeeccCCC
Q psy18018 126 VWHIESGECLHVLVGHLA---AVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEECLHAE-L---QET-EVELSHGYALRS 194 (635)
Q Consensus 126 vwd~~~~~~~~~l~~h~~---~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~~~~~-~---~~~-~~~~~~~~~~~~ 194 (635)
+||+++++.+..+.+|.. .|.+++| + +++|++++.||.|++||+.+++.+..+ . .+. .+...... ++.
T Consensus 187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ 265 (615)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS
T ss_pred EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC
Confidence 999999999999999999 9999999 6 899999999999999999999988887 3 443 44444444 788
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeCC----CCCeEEEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018 195 RIVSGSDDNTLKVWSATTGKCLRTLIGH----TGGVWSSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI 269 (635)
Q Consensus 195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 269 (635)
.+++++.|+.|++||+.+++.+..+..+ ...+.++.+ +++.+++++.||.|++||+.+.....
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~------------ 333 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK------------ 333 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE------------
Confidence 9999999999999999999999999877 467777777 69999999999999999987643211
Q ss_pred eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018 270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (635)
........+..+.+ ++ +..+....... +|+.. .+. ..+......+++
T Consensus 334 ----------------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~-------~w~~~-----~~~-~~~~~~v~~~~~ 380 (615)
T 1pgu_A 334 ----------------TISGHNKGITALTV-NP---LISGSYDGRIM-------EWSSS-----SMH-QDHSNLIVSLDN 380 (615)
T ss_dssp ----------------EECCCSSCEEEEET-TT---TEEEETTSCEE-------ETTTT-----EEE-CCCCSCEEEEEC
T ss_pred ----------------EEeCCCCCEEEEEe-cC---cEEECCCCeEE-------EEEch-----hhc-CcccCceEEEEE
Confidence 11122334455555 44 22222222111 22222 111 222333444555
Q ss_pred EecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEE------E
Q psy18018 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRI------C 422 (635)
Q Consensus 350 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~ 422 (635)
+++..+++++.|+.|++|++.+++... .+.+++++ ...++..+.++.+.+|+..+++....... .
T Consensus 381 -~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 381 -SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp -CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred -CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence 557788888888999998877654432 56677776 23344444888888998876655443321 1
Q ss_pred eeCCcEEEEEeC-CCcEEEEeCCCCcee-eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018 423 LFDGVHVVSGSL-DTSIRVWEAESGNLR-HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 423 ~~~~~~l~~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
...++++++++. |+.|++||+.+++.. ..+.+|...|.++++ ++++|++++.||.|++||+.+++.+..+.. .|
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h 530 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA--FR 530 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC--CC
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec--CC
Confidence 122889999999 999999999988766 777889999999998 567999999999999999999998877653 27
Q ss_pred cccEEEEEe------------cCCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018 499 QSAVTCLQF------------NSRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565 (635)
Q Consensus 499 ~~~v~~~~~------------~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 565 (635)
...|++++| ++++|++++.||.|++||++++ +.+..+.. |...|++++|+|+++ |
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-----------HKDGVNNLLWETPST-L 598 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-----------STTCEEEEEEEETTE-E
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc-----------CccceEEEEEcCCCC-e
Confidence 788999999 6789999999999999999987 55555443 688999999999999 9
Q ss_pred EEecCCCeEEEEeCCC
Q psy18018 566 ITSSDDGTVKLWDVKT 581 (635)
Q Consensus 566 ~~~~~d~~v~iwd~~~ 581 (635)
++++.||.|++||+++
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-51 Score=463.25 Aligned_cols=490 Identities=22% Similarity=0.306 Sum_probs=390.0
Q ss_pred CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018 73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY 150 (635)
Q Consensus 73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~ 150 (635)
...+.+|.+.| ++++|+ +++||+|+.||+|++||+.+ ++.+..+.+|.+.|.+++|
T Consensus 608 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 608 RLVVRPHTDAV-YHACFSQDGQRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAF 665 (1249)
T ss_dssp SEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEE
T ss_pred eEEEecccccE-EEEEECCCCCEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEE
Confidence 34677999988 999999 99999999999888888764 4567788899999999999
Q ss_pred --cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccC---CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018 151 --DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225 (635)
Q Consensus 151 --~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 225 (635)
++++|++++.||+|++||+.+++.+..+..+...+....+.+ ...+++++.|+.|++||+.+++++..+.+|.+.
T Consensus 666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 899999999999999999999999988877766666555544 357899999999999999999999999999999
Q ss_pred eEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018 226 VWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE 303 (635)
Q Consensus 226 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (635)
|.+++|+ ++.+++++.||.|++||+.+............... ...........+..+.+++++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---------------SEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----------------------CCCCCBCCCCBCTTS
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccc---------------cCCccccccceEEEEEECCCC
Confidence 9999994 78999999999999999887543221110000000 000000111123334455555
Q ss_pred hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018 304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~ 383 (635)
..+..+...... +|..............+......++|+|++.++++++.+|.|++|++.++..+..+.+|.
T Consensus 811 ~~l~~~~~~~v~--------~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 811 DKIIVAAKNKVL--------LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp SEEEEEETTEEE--------EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred CEEEEEcCCcEE--------EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 544443322111 111111111111122344566778999999999999999999999999999999999999
Q ss_pred cceeEEEEe--CCEEEEEeCCCcEEEEEccCCc----------------------------------------------c
Q psy18018 384 SLTSGMELR--NNILVSGNADSTVKVWDIVSGT----------------------------------------------K 415 (635)
Q Consensus 384 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~----------------------------------------------~ 415 (635)
..|.+++|+ +..+++++.|+.+++|++.+.. .
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 999999997 6699999999999999975320 1
Q ss_pred eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEec
Q psy18018 416 KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLS 493 (635)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 493 (635)
......++|+++++++|+.+|.|++||+.+++....+.+|...|.++.+ +++++++++.||.|++||+.+++.....
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~- 1041 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ- 1041 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-
Confidence 1223357889999999999999999999999999999999999999888 4669999999999999999998766433
Q ss_pred CCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018 494 GRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG 572 (635)
Q Consensus 494 ~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 572 (635)
. |...+.++++ .+..+++++.|+.|++||+.+++....+.. |...|++++|+||++++++++.|+
T Consensus 1042 ~---~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A 1042 A---HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-----------HQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp C---CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC-----------CSSCCCCEEECSSSSSCEEECCSS
T ss_pred c---CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc-----------cCCcEEEEEECCCCCEEEEEcCCC
Confidence 3 8889999999 467889999999999999999987766544 688999999999999999999999
Q ss_pred eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+|++||+.+++.+..+ .+|.+.|++++|+|||++|++++.||. |.+||++
T Consensus 1108 ~v~iwd~~~~~~~~~l-----~~h~~~v~~~~~s~dg~~lat~~~dg~----i~vwd~~ 1157 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHEL-----KGHNGCVRCSAFSLDGILLATGDDNGE----IRIWNVS 1157 (1249)
T ss_dssp CCCEECSSSSSCSBCC-----CCCSSCEEEEEECSSSSEEEEEETTSC----CCEEESS
T ss_pred cEEEEECCCcceeeee-----ccCCCcEEEEEECCCCCEEEEEeCCCE----EEEEECC
Confidence 9999999999988777 578999999999999999999999998 4444544
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-48 Score=415.65 Aligned_cols=470 Identities=13% Similarity=0.120 Sum_probs=334.5
Q ss_pred eeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cC
Q psy18018 76 LKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DG 152 (635)
Q Consensus 76 l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~ 152 (635)
..||.+.| +|++|+ +++||+|+.||+|+|||..++ +....+ .|..+|.+++| .+
T Consensus 13 ~~gh~~~V-~~lafspdg~~lAsgs~Dg~I~lw~~~~~---------------------~~~~~~-~~~~~V~~l~fspg 69 (902)
T 2oaj_A 13 KYGMSSKP-IAAAFDFTQNLLAIATVTGEVHIYGQQQV---------------------EVVIKL-EDRSAIKEMRFVKG 69 (902)
T ss_dssp EEECSSCE-EEEEEETTTTEEEEEETTSEEEEECSTTC---------------------EEEEEC-SSCCCEEEEEEETT
T ss_pred ccCCCCCc-EEEEECCCCCEEEEEeCCCEEEEEeCCCc---------------------EEEEEc-CCCCCEEEEEEcCC
Confidence 35898888 999999 999999999999999987643 333333 57889999999 67
Q ss_pred CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-----------EEEeC
Q psy18018 153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL-----------RTLIG 221 (635)
Q Consensus 153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~ 221 (635)
++|++++.|++|++||+.+++.+..+..+..+....+.+.+.++++|+.||.|++||+.++++. ..+.+
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~ 149 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA 149 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence 7899999999999999999998887766666666677778899999999999999999988764 23467
Q ss_pred CCCCeEEEEeeC---CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018 222 HTGGVWSSQMAG---NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT 298 (635)
Q Consensus 222 h~~~v~~~~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (635)
|.++|.+++|++ ..+++++.||.| +||+.+.......... ..+ .
T Consensus 150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~-~~~------------g------------------- 196 (902)
T 2oaj_A 150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE-LPP------------F------------------- 196 (902)
T ss_dssp CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC-BCT------------T-------------------
T ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc-cCC------------c-------------------
Confidence 999999999964 589999999999 9998775432100000 000 0
Q ss_pred ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe
Q psy18018 299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~ 378 (635)
.+.. .. .. .....+......++|+|+|.+|++|+.||.|++||+.+++++..
T Consensus 197 -~~~~-----------------~~---------~~-~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 197 -APGG-----------------DF---------SE-KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp -CCCS-----------------TT---------CC-CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred -CCCc-----------------cc---------cc-ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 0000 00 00 00011223456688999999999999999999999999887653
Q ss_pred --e---eC-------------CCcceeEEEEe----C---CEEEEEeCC-----CcEEEEEccC----------------
Q psy18018 379 --L---MG-------------HQSLTSGMELR----N---NILVSGNAD-----STVKVWDIVS---------------- 412 (635)
Q Consensus 379 --~---~~-------------~~~~v~~l~~~----~---~~l~s~~~d-----g~i~iwd~~~---------------- 412 (635)
+ .. |...|.+++|. + .++++++.+ ..+.+|++..
T Consensus 249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~ 328 (902)
T 2oaj_A 249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY 328 (902)
T ss_dssp ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence 2 12 34579999994 2 367777665 3788988521
Q ss_pred --CcceeEE---------E-EEe----------eCCcEEEEEeCCCcEEEEeCCCCceeee-------eccCCccEEEEE
Q psy18018 413 --GTKKLMF---------R-ICL----------FDGVHVVSGSLDTSIRVWEAESGNLRHT-------LMGHQSLTSGME 463 (635)
Q Consensus 413 --~~~~~~~---------~-~~~----------~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~ 463 (635)
++..... . .+. .++..+++++.|+.+++|++.++..... +..|...|+++.
T Consensus 329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~ 408 (902)
T 2oaj_A 329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM 408 (902)
T ss_dssp HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE
T ss_pred cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEE
Confidence 1111111 1 111 2445889999999999999987754322 233444444433
Q ss_pred e------------------------------------cCCEEEEEeCCCcEEEEECCCCceeE--EecC------CCccc
Q psy18018 464 L------------------------------------RNNILVSGNADSTVKVWDIVSGQCLQ--TLSG------RNKHQ 499 (635)
Q Consensus 464 ~------------------------------------~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~------~~~~~ 499 (635)
+ ++++|++|+.|++|++||+.++.... .+.. ...|.
T Consensus 409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence 2 45699999999999999998874211 1110 01378
Q ss_pred ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee-----------------ecc----------c------eecC-c
Q psy18018 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP-----------------LMS----------S------FILN-P 543 (635)
Q Consensus 500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~-----------------~~~----------~------~~~~-~ 543 (635)
..|.+++| ++++||+|+.||+|+|||+.+++.... +.. . .... .
T Consensus 489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 568 (902)
T 2oaj_A 489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS 568 (902)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence 89999999 699999999999999999987642110 000 0 0000 1
Q ss_pred eeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCC-CCCceEEEEEeC-----CCC---eEEEE
Q psy18018 544 FYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSG-GSGGVVWRIRAS-----ETK---LVCAV 614 (635)
Q Consensus 544 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~i~~l~~s-----~d~---~~l~~ 614 (635)
.....|...|++++||||| +||+|+.|++|+|||++++..+......... +|.+.|++|+|+ ||| ++|++
T Consensus 569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s 647 (902)
T 2oaj_A 569 TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC 647 (902)
T ss_dssp EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence 2233489999999999999 9999999999999999888776431111112 788999999999 885 89999
Q ss_pred ccCCCeeEeEEEEEeeec
Q psy18018 615 GSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 615 ~~~dg~~~~~l~~~d~~~ 632 (635)
|+.|++ +++|.++++.
T Consensus 648 gs~D~t--v~~wd~~p~~ 663 (902)
T 2oaj_A 648 GTDMGE--VITYKILPAS 663 (902)
T ss_dssp EETTSE--EEEEEEEECG
T ss_pred EecCCc--EEEEEEecCC
Confidence 999999 6777665443
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-45 Score=391.47 Aligned_cols=449 Identities=17% Similarity=0.197 Sum_probs=355.2
Q ss_pred CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018 15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS 92 (635)
Q Consensus 15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~ 92 (635)
+..++.|.||.+.| +|++|| |+|++||+++.+ ..+.+||..+++.+..+.+|.+.+ ++++|+ ++
T Consensus 3 l~~~~~~~~h~~~v-~~i~~s----p~~~~la~~~~~--------g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~ 68 (814)
T 3mkq_A 3 LDIKKTFSNRSDRV-KGIDFH----PTEPWVLTTLYS--------GRVEIWNYETQVEVRSIQVTETPV-RAGKFIARKN 68 (814)
T ss_dssp CCCEEEEEEECSCE-EEEEEC----SSSSEEEEEETT--------SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGT
T ss_pred cccceeeecCCCce-EEEEEC----CCCCEEEEEeCC--------CEEEEEECCCCceEEEEecCCCcE-EEEEEeCCCC
Confidence 34567899999999 999999 999999999754 445579999999999999999988 999999 99
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018 93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD 170 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~ 170 (635)
+||+++.||.|++||+.+ ++.+..+.+|.+.|++++| ++++|++++.||+|++||+.
T Consensus 69 ~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp EEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 999999999888888764 4566778899999999999 89999999999999999999
Q ss_pred Cc-cceeeccccceeEEeeecc--CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-CCeEEEEe----eCCEEEEeeCc
Q psy18018 171 TE-ECLHAELQETEVELSHGYA--LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT-GGVWSSQM----AGNIIISGSTD 242 (635)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~----~~~~l~s~~~d 242 (635)
++ .....+..+........+. ++..+++++.||.|++||+.+++....+..+. ..+..++| ++..+++++.|
T Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 87 4455555555544544454 46799999999999999999888888777655 88999988 57899999999
Q ss_pred eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCC
Q psy18018 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN 322 (635)
Q Consensus 243 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (635)
|.|++||+.+......
T Consensus 208 g~i~~~d~~~~~~~~~---------------------------------------------------------------- 223 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVAT---------------------------------------------------------------- 223 (814)
T ss_dssp SEEEEEETTTTEEEEE----------------------------------------------------------------
T ss_pred CEEEEEECCCCcEEEE----------------------------------------------------------------
Confidence 9999999865432100
Q ss_pred cchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC---EEEEE
Q psy18018 323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSG 399 (635)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~s~ 399 (635)
...+......++++|++.++++++.||.|++||+.+++.+..+..|...+.+++++++ .++++
T Consensus 224 --------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 289 (814)
T 3mkq_A 224 --------------LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS 289 (814)
T ss_dssp --------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE
T ss_pred --------------EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE
Confidence 0011233456779999999999999999999999999999999999999999999843 24556
Q ss_pred eCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc---EEE------EeCCCCce----eeeeccCCccEEEEEe--
Q psy18018 400 NADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS---IRV------WEAESGNL----RHTLMGHQSLTSGMEL-- 464 (635)
Q Consensus 400 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~~------~d~~~~~~----~~~~~~~~~~v~~~~~-- 464 (635)
+.++.+.+|++...... ..++|++..+++++.+.. +.. |++..+.. ...+..+...+.++++
T Consensus 290 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 290 GFDNGFTVLSLGNDEPT---LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp EETTEEEEEECSCCSCC---EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred EeCCCEEEEEcCCCCce---eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 66778999998776543 345788888888766542 111 22333322 2334456666777776
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN 542 (635)
Q Consensus 465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 542 (635)
+++++++++ |+.+.+|++...... +...+.+++| +++++++++.+|.|++|+.-.
T Consensus 367 dg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------- 423 (814)
T 3mkq_A 367 NGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------- 423 (814)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEECTTSSCEEEECTTCCEEEEETTE--------------
T ss_pred CCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC--------------
Confidence 566888888 899999998654322 2345667888 689999999999999996321
Q ss_pred ceeEEeccCceecccccCCC---eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 543 PFYFLIYSQPLLCPHLQFNS---RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
.|...+.+++|+||+ ++|++++.|+.|++||+.+++.+..+. .+.. .++|+|||++|+++
T Consensus 424 -----~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----~~~~---~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 424 -----EVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----VNAK---DVIWSDNGELVMIV 486 (814)
T ss_dssp -----ECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----SCEE---EEEECTTSSEEEEE
T ss_pred -----CccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----cCCC---EEEEcCCCCEEEEE
Confidence 256778999999999 688999999999999999999998883 3433 89999999999999
No 12
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-42 Score=344.13 Aligned_cols=340 Identities=53% Similarity=0.822 Sum_probs=259.7
Q ss_pred eeeeecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCC
Q psy18018 62 EINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGH 141 (635)
Q Consensus 62 ~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h 141 (635)
..-|.....+..+.+.+|.+.++.|+++++++|++|+.||+|++||+.+ ++.+..+.+|
T Consensus 100 ~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h 158 (445)
T 2ovr_B 100 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGH 158 (445)
T ss_dssp HHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------CCEEEECCCC
T ss_pred hhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC---------------------CcEEEEEcCC
Confidence 3347777777788999999998899999999999999999988888764 4566788899
Q ss_pred CcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018 142 LAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG 221 (635)
Q Consensus 142 ~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 221 (635)
.++|.+++|+++.+++++.||+|++||+.+++.+.. +.+
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------------------------------------~~~ 197 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT-----------------------------------------LYG 197 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------ECC
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEE-----------------------------------------ECC
Confidence 999999999888888888888888887766554444 444
Q ss_pred CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018 222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ 301 (635)
Q Consensus 222 h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (635)
|...|.++.++++.+++++.||.|++||+.+.....
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-------------------------------------------- 233 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH-------------------------------------------- 233 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE--------------------------------------------
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE--------------------------------------------
Confidence 555555555555555555555555555543321100
Q ss_pred chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018 302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~ 381 (635)
....+...+.++..++.++++|+.||.|++||+.+++.+..+.+
T Consensus 234 ------------------------------------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (445)
T 2ovr_B 234 ------------------------------------VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 277 (445)
T ss_dssp ------------------------------------EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred ------------------------------------EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecC
Confidence 00011222223334566677777777788888777788888888
Q ss_pred CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEE
Q psy18018 382 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSG 461 (635)
Q Consensus 382 ~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~ 461 (635)
|...+.++.+++.. +++++.|+.|++||+.+++.+..+.+|...+.+
T Consensus 278 ~~~~v~~~~~~~~~---------------------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 278 HTNRVYSLQFDGIH---------------------------------VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp CSSCEEEEEECSSE---------------------------------EEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred CCCceEEEEECCCE---------------------------------EEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence 98888888875544 445555556666666677778888899999999
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceec
Q psy18018 462 MELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541 (635)
Q Consensus 462 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 541 (635)
+.++++++++++.||.|++||+.+++.+..+.....|...|.+++++++++++++.||.|++||+.+++.+..+.....
T Consensus 325 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 403 (445)
T 2ovr_B 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES- 403 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT-
T ss_pred EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecccc-
Confidence 9999999999999999999999999999999877778899999999999999999999999999999988776632100
Q ss_pred CceeEEeccCceecccccCCCeEEEEecCCCe----EEEEeCCCC
Q psy18018 542 NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT----VKLWDVKTG 582 (635)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----v~iwd~~~~ 582 (635)
..+...|.+++|+|++.++++|+.||+ |.|||+...
T Consensus 404 -----~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 404 -----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp -----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred -----CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 126788999999999999999999998 999998753
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.1e-42 Score=340.66 Aligned_cols=337 Identities=50% Similarity=0.842 Sum_probs=278.9
Q ss_pred CeEEEEeeCCCcc-eEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018 132 GECLHVLVGHLAA-VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSA 210 (635)
Q Consensus 132 ~~~~~~l~~h~~~-v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 210 (635)
.+....+.+|.+. +.++.+++++|++++.||+|++||+.+
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~--------------------------------------- 148 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT--------------------------------------- 148 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------------------------
T ss_pred cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC---------------------------------------
Confidence 3456778899886 477777888888888888777776544
Q ss_pred CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018 211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR 290 (635)
Q Consensus 211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (635)
++.+..+.+|.+.|+++.++++.+++++.||+|++||+.++....
T Consensus 149 --~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--------------------------------- 193 (445)
T 2ovr_B 149 --GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH--------------------------------- 193 (445)
T ss_dssp --CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE---------------------------------
T ss_pred --CcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEE---------------------------------
Confidence 445556678999999999999999999999999999987643210
Q ss_pred ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018 291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA 370 (635)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~ 370 (635)
....+...+.++..++..+++|+.||.|++||+
T Consensus 194 -----------------------------------------------~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 194 -----------------------------------------------TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp -----------------------------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred -----------------------------------------------EECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence 011234445566667889999999999999999
Q ss_pred cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018 371 ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH 450 (635)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 450 (635)
.+++.+..+.+|...+.+++++++.+++++ .|+.|++||+.+++.+.
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGA---------------------------------YDFMVKVWDPETETCLH 273 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEECSSCEEEEE---------------------------------TTSCEEEEEGGGTEEEE
T ss_pred CCCcEEEEEcCCcccEEEEEECCCEEEEEc---------------------------------CCCEEEEEECCCCcEeE
Confidence 999999999999999998887655555554 45555555666667778
Q ss_pred eeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCc
Q psy18018 451 TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 451 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 530 (635)
.+.+|...+.++.++++++++++.|+.|++||+.+++.+..+.. |...+.++.++++++++++.||.|++||+++++
T Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC---CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcC---CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc
Confidence 88899999999999999999999999999999999999999887 888999999999999999999999999999998
Q ss_pred eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL 610 (635)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 610 (635)
....+.... .|...|++++|+ +++|++|+.||.|++||+.+++.+..+......++.+.|++++|+|++.
T Consensus 351 ~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 351 CLQTLQGPN--------KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp EEEEECSTT--------SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred EEEEEccCC--------CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence 777665421 256789999885 6899999999999999999999998886555457889999999999999
Q ss_pred EEEEccCCCeeEeEEEEEeeecCCC
Q psy18018 611 VCAVGSRNGTEETKLLVLDFDVDSK 635 (635)
Q Consensus 611 ~l~~~~~dg~~~~~l~~~d~~~~~~ 635 (635)
+|++++.||+...++++|||+.+.|
T Consensus 421 ~la~~~~dg~~~~~l~v~df~~~~~ 445 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFDVDMK 445 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECCCCC-
T ss_pred EEEEcccCCCCccEEEEEECCCCCC
Confidence 9999999998788999999998764
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=312.52 Aligned_cols=227 Identities=22% Similarity=0.375 Sum_probs=198.3
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
+++++..+++++.|+.|++||+.+++.+..+..|...+.+++|+ |++++
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-------------------------------pdg~~ 136 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-------------------------------PDSQY 136 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-------------------------------TTSSE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-------------------------------CCCCE
Confidence 45566677788888888888888888888887777777766664 67778
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 506 (635)
|++++.++.+++|++++++....+..|...+.++++ ++++|++++.|+.|++||+.+++.+..+.+ |..+|.+++
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~ 213 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLT 213 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEE
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEE
Confidence 888888888888998888888888889999999888 467999999999999999999999999887 888999999
Q ss_pred e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018 507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF 584 (635)
Q Consensus 507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~ 584 (635)
| ++++|++++.|+.|++||+++++....+.. |...|.+++|+|++++|++++.|++|++||+.++++
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-----------HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-----------CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence 9 689999999999999999999887666554 688999999999999999999999999999999999
Q ss_pred EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018 585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
+..+ .+|.+.|++++|+|++++|++++.||. +++|.
T Consensus 283 ~~~~-----~~h~~~v~~v~~s~~g~~l~s~~~d~~--i~vwd 318 (321)
T 3ow8_A 283 VHTF-----FDHQDQVWGVKYNGNGSKIVSVGDDQE--IHIYD 318 (321)
T ss_dssp EEEE-----CCCSSCEEEEEECTTSSEEEEEETTCC--EEEEE
T ss_pred EEEE-----cCCCCcEEEEEECCCCCEEEEEeCCCe--EEEEe
Confidence 9988 578999999999999999999999998 45553
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-40 Score=325.03 Aligned_cols=283 Identities=29% Similarity=0.485 Sum_probs=246.9
Q ss_pred EEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEECC
Q psy18018 135 LHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWSAT 211 (635)
Q Consensus 135 ~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~ 211 (635)
...+.+|.++|++++| ++++|++++.||+|++||+.+++....+..+...+..+. .+.+.+|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 4567899999999999 889999999999999999999998888887765555444 4567899999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018 212 TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE 291 (635)
Q Consensus 212 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (635)
+++++.++.+|...|.+++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~------------------------------------------------------------- 199 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVS------------------------------------------------------------- 199 (410)
T ss_dssp SSCEEECCCCCSSCEEEEE-------------------------------------------------------------
T ss_pred CCceeEEEcCCCCCEEEEE-------------------------------------------------------------
Confidence 9999999999998888776
Q ss_pred eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEcc
Q psy18018 292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAE 371 (635)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~ 371 (635)
|+|++.++++|+.|+.|++||+.
T Consensus 200 ---------------------------------------------------------~~p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 200 ---------------------------------------------------------IMPNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp ---------------------------------------------------------ECSSSSEEEEEETTSEEEEEETT
T ss_pred ---------------------------------------------------------EeCCCCEEEEEeCCCeEEEEECC
Confidence 66677788888888888889988
Q ss_pred CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee
Q psy18018 372 SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT 451 (635)
Q Consensus 372 ~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 451 (635)
++.++..+.+|...+.++.++ +++.++++++.|+.|++||+.+++....
T Consensus 223 ~~~~~~~~~~h~~~v~~~~~~-------------------------------~~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 223 TGYCVKTFTGHREWVRMVRPN-------------------------------QDGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp TCCEEEEEECCSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCcEEEEEeCCCccEEEEEEC-------------------------------CCCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 888888899999888887765 5666777888888888888888888888
Q ss_pred eccCCccEEEEEec----------------------CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--
Q psy18018 452 LMGHQSLTSGMELR----------------------NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-- 507 (635)
Q Consensus 452 ~~~~~~~v~~~~~~----------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 507 (635)
+.+|...|.++.+. +.++++|+.|+.|++||+.+++++..+.+ |...|.+++|
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~ 348 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHS 348 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECS
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---CCCcEEEEEEcC
Confidence 89999999999885 45899999999999999999999999987 8899999999
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018 508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580 (635)
Q Consensus 508 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~ 580 (635)
++++|++++.|+.|++||+.+++.+..+.. |...|++++|+|++++|++|+.|++|++|+++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNA-----------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSCCCEEEEC-----------CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcC-----------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 589999999999999999998887666544 78899999999999999999999999999863
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-40 Score=325.15 Aligned_cols=304 Identities=28% Similarity=0.420 Sum_probs=250.1
Q ss_pred CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEE
Q psy18018 17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRI 94 (635)
Q Consensus 17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l 94 (635)
....|.||.++| +|++|+ |++++|++++.++. +.+||..+++..+.+.+|.+.| .+++|+ +++|
T Consensus 100 ~~~~l~gh~~~V-~~~~~~----p~~~~l~s~s~Dg~--------i~vwd~~~~~~~~~l~~h~~~V-~~v~~~~~~~~l 165 (410)
T 1vyh_C 100 EKYALSGHRSPV-TRVIFH----PVFSVMVSASEDAT--------IKVWDYETGDFERTLKGHTDSV-QDISFDHSGKLL 165 (410)
T ss_dssp CSCEEECCSSCE-EEEEEC----SSSSEEEEEESSSC--------EEEEETTTCCCCEEECCCSSCE-EEEEECTTSSEE
T ss_pred ceEeecccCCcE-EEEEEc----CCCCEEEEEeCCCe--------EEEEECCCCcEEEEEeccCCcE-EEEEEcCCCCEE
Confidence 356889999999 999999 99999999987544 4469999999999999999988 999999 8899
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018 95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172 (635)
Q Consensus 95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~ 172 (635)
++|+.|++|++||+.+ ++++..+.+|...|.+++| ++++|++++.|++|++||+.++
T Consensus 166 ~sgs~D~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~ 224 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQG---------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224 (410)
T ss_dssp EEEETTSCCCEEETTS---------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCeEEEEeCCC---------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999988888764 4566778899999999999 8899999999999999999999
Q ss_pred cceeeccccceeEEee-eccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEeccc
Q psy18018 173 ECLHAELQETEVELSH-GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNA 251 (635)
Q Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 251 (635)
+.+..+..+....... ..+++..+++++.|+.|++||+.++++...+.+|...|.++.|....-.. .+.
T Consensus 225 ~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----------~~~ 294 (410)
T 1vyh_C 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS----------SIS 294 (410)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG----------GGG
T ss_pred cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc----------chh
Confidence 9888887776544444 44567889999999999999999999999999999999999875321000 000
Q ss_pred ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE 331 (635)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (635)
.
T Consensus 295 ~------------------------------------------------------------------------------- 295 (410)
T 1vyh_C 295 E------------------------------------------------------------------------------- 295 (410)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 411 (635)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~ 411 (635)
...........++.++++|+.|+.|++||+.++.++..+.+|...|.+++|+
T Consensus 296 ---------~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~------------------- 347 (410)
T 1vyh_C 296 ---------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH------------------- 347 (410)
T ss_dssp ---------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-------------------
T ss_pred ---------hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc-------------------
Confidence 0000001123357899999999999999999999999999999999988876
Q ss_pred CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECC
Q psy18018 412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIV 484 (635)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 484 (635)
|++++|++++.|+.|++||+.+++.+..+.+|...|.+++++ +.+|++|+.|++|++|+++
T Consensus 348 ------------~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 348 ------------SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ------------SSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ------------CCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 566778888888888889888888999999999999999985 4599999999999999863
No 17
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.2e-40 Score=353.58 Aligned_cols=397 Identities=17% Similarity=0.202 Sum_probs=308.5
Q ss_pred CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018 71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148 (635)
Q Consensus 71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l 148 (635)
+..+.+.+|.+.| ++++|+ +++||+++.||.|++||+. +++.+..+.+|.++|+++
T Consensus 4 ~~~~~~~~h~~~v-~~i~~sp~~~~la~~~~~g~v~iwd~~---------------------~~~~~~~~~~~~~~v~~~ 61 (814)
T 3mkq_A 4 DIKKTFSNRSDRV-KGIDFHPTEPWVLTTLYSGRVEIWNYE---------------------TQVEVRSIQVTETPVRAG 61 (814)
T ss_dssp CCEEEEEEECSCE-EEEEECSSSSEEEEEETTSEEEEEETT---------------------TTEEEEEEECCSSCEEEE
T ss_pred ccceeeecCCCce-EEEEECCCCCEEEEEeCCCEEEEEECC---------------------CCceEEEEecCCCcEEEE
Confidence 4567889999998 999999 9999999999888888876 456678888999999999
Q ss_pred Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEE-eeeccCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCC
Q psy18018 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVEL-SHGYALRSRIVSGSDDNTLKVWSATTG-KCLRTLIGHTG 224 (635)
Q Consensus 149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~ 224 (635)
+| ++++|++++.||.|++||+.+++.+..+..+...+. ..+.+++..|++++.||.|++||+.++ .....+.+|..
T Consensus 62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 99 899999999999999999999998888876655444 444556779999999999999999987 77788999999
Q ss_pred CeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018 225 GVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ 301 (635)
Q Consensus 225 ~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (635)
.|.+++|+ ++.+++++.||.|++||+........
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~------------------------------------------- 178 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT------------------------------------------- 178 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE-------------------------------------------
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE-------------------------------------------
Confidence 99999995 56999999999999999765321100
Q ss_pred chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe--cCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018 302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF--DGVHVVSGSLDTSIRVWEAESGNLRHTL 379 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 379 (635)
...........++++| ++.++++++.+|.|++||+.+++.+..+
T Consensus 179 ----------------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 179 ----------------------------------LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp ----------------------------------EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ----------------------------------EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 0011223455677888 9999999999999999999999999999
Q ss_pred eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018 380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459 (635)
Q Consensus 380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 459 (635)
.+|...|.+++|+ |++.++++++.||.|++||+.+++....+..|...+
T Consensus 225 ~~~~~~v~~~~~~-------------------------------~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 273 (814)
T 3mkq_A 225 EGHMSNVSFAVFH-------------------------------PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273 (814)
T ss_dssp ECCSSCEEEEEEC-------------------------------SSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE
T ss_pred cCCCCCEEEEEEc-------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE
Confidence 9999999988876 455566677777777777777777777777777788
Q ss_pred EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecC----------------------------------------CC
Q psy18018 460 SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSG----------------------------------------RN 496 (635)
Q Consensus 460 ~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------~~ 496 (635)
.++++.++ .+++++.++.+.+|++........+.. ..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (814)
T 3mkq_A 274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELG 353 (814)
T ss_dssp EEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEEC
T ss_pred EEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCC
Confidence 88777543 233344455577777654322211110 01
Q ss_pred cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018 497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574 (635)
Q Consensus 497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v 574 (635)
.+...+.+++| +++++++++ |+.+.+|++...... +...+.+++|+||++++++++.++.|
T Consensus 354 ~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----------------~~~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 354 SVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----------------AFGKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp CCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----------------EEEECSEEEECTTSSCEEEECTTCCE
T ss_pred CCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc----------------CCCceEEEEEeCCCCeEEEEeCCCcE
Confidence 13345677777 688999988 899999997643311 24578899999999999999999999
Q ss_pred EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCC---eEEEEccCCCeeEeEEEEEeee
Q psy18018 575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETK---LVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~---~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
++|+. + .++...+.+++|+||| .+|++++.|+. |..||++
T Consensus 417 ~l~~~--------~-----~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~----v~~~d~~ 459 (814)
T 3mkq_A 417 KYYKN--------F-----KEVTSWSVPMHSAIDRLFSGALLGVKSDGF----VYFFDWD 459 (814)
T ss_dssp EEEET--------T-----EECTTCCCCCSSCCCEEECSSSEEEEETTE----EEEECTT
T ss_pred EEEEC--------C-----CCccceEEcCCcCccceecceEEEEecCCE----EEEEECC
Confidence 99962 2 2456678899999999 58889999998 6666654
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=309.71 Aligned_cols=283 Identities=23% Similarity=0.379 Sum_probs=241.7
Q ss_pred CceeeccCcceEEEEEEc------CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceE
Q psy18018 73 PKVLKGHDDHVITCLQFS------GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVR 146 (635)
Q Consensus 73 ~~~l~~h~~~vi~~~~~s------~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~ 146 (635)
.+.+++|.+.| .+++|+ +++|+||+.|++|+|||+.+++. .....+.+|...|.
T Consensus 25 ~~~~~~H~~~V-~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------~~~~~l~gh~~~v~ 84 (321)
T 3ow8_A 25 FKQEQAHDDAI-WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------DLQWSLEGHQLGVV 84 (321)
T ss_dssp EEETTSSSSCE-EEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------EEEEEECCCSSCEE
T ss_pred eeecccCCCcE-EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------eeeeeeccCCCCEE
Confidence 45567999998 999997 45899999999999998764421 33456889999999
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy18018 147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT 223 (635)
Q Consensus 147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~ 223 (635)
+++| ++..+++++.|++|++||+.+++.+..+..+.. +....+.+++.+|++++.+|.|++||+.+++....+..|.
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 9999 889999999999999999999988877665543 3334455667899999999999999999988888877776
Q ss_pred CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCch
Q psy18018 224 GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPE 303 (635)
Q Consensus 224 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (635)
..|.+++
T Consensus 165 ~~v~~~~------------------------------------------------------------------------- 171 (321)
T 3ow8_A 165 KFILSIA------------------------------------------------------------------------- 171 (321)
T ss_dssp SCEEEEE-------------------------------------------------------------------------
T ss_pred ceEEEEE-------------------------------------------------------------------------
Confidence 6665544
Q ss_pred hhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC
Q psy18018 304 DLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~ 383 (635)
|+|++++|++|+.||.|++||+.+++.+..+.+|.
T Consensus 172 ---------------------------------------------~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~ 206 (321)
T 3ow8_A 172 ---------------------------------------------YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206 (321)
T ss_dssp ---------------------------------------------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ---------------------------------------------ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC
Confidence 77888999999999999999999999999999999
Q ss_pred cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEE
Q psy18018 384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 463 (635)
Q Consensus 384 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 463 (635)
..|.+++|+ |++++|++++.|+.|++||+++++....+.+|...|.+++
T Consensus 207 ~~v~~l~~s-------------------------------pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 207 MPIRSLTFS-------------------------------PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SCCCEEEEC-------------------------------TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CceeEEEEc-------------------------------CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 999998876 5666778888888888888888888899999999999999
Q ss_pred ec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018 464 LR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK 527 (635)
Q Consensus 464 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~ 527 (635)
++ +.+|++++.|++|++||+.+++++..+.. |...|.+++| ++++|++++.|+.|++||..
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD---HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 84 66999999999999999999999999987 8899999999 58899999999999999964
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=305.20 Aligned_cols=223 Identities=26% Similarity=0.397 Sum_probs=189.3
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++++ |++++
T Consensus 63 ~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-------------------------------~~~~~ 111 (304)
T 2ynn_A 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-------------------------------PTKPY 111 (304)
T ss_dssp EEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-------------------------------SSSSE
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-------------------------------CCCCE
Confidence 67778889999999999999999999999999999999999886 45555
Q ss_pred EEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018 429 VVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC 504 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 504 (635)
|++++.|++|++||++++ .....+.+|...|.++++++ .++++|+.|++|++||+.++.....+.. .+...+..
T Consensus 112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~ 189 (304)
T 2ynn_A 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT--GQERGVNY 189 (304)
T ss_dssp EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--CCTTCEEE
T ss_pred EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--CCcCcEEE
Confidence 666666666666766665 45567889999999999864 5999999999999999988776666543 25567877
Q ss_pred EEe----cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018 505 LQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580 (635)
Q Consensus 505 ~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~ 580 (635)
+.+ ++.+|++++.|++|++||+++++.+..+.. |...|.+++|+|++++|++|+.||+|++||+.
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-----------h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-----------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-----------CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-----------CCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 777 467999999999999999999987776654 68899999999999999999999999999999
Q ss_pred CCceEEeeeeccCCCCCceEEEEEeCCCCe--EEEEccCCCe
Q psy18018 581 TGEFIRNLVSLDSGGSGGVVWRIRASETKL--VCAVGSRNGT 620 (635)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~--~l~~~~~dg~ 620 (635)
+++.+..+ ..+...+++++|+|++. ++++|+.||.
T Consensus 259 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~asg~~~g~ 295 (304)
T 2ynn_A 259 TYKVEKTL-----NVGLERSWCIATHPTGRKNYIASGFDNGF 295 (304)
T ss_dssp TCCEEEEE-----CCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred CCceeeec-----cCCCccEEEEEECCCCCceEEEEecCCce
Confidence 99999988 56788999999999875 6999999984
No 20
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-38 Score=319.65 Aligned_cols=346 Identities=23% Similarity=0.417 Sum_probs=277.1
Q ss_pred eEEEEeeCCCcce-EEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECC
Q psy18018 133 ECLHVLVGHLAAV-RCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSAT 211 (635)
Q Consensus 133 ~~~~~l~~h~~~v-~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 211 (635)
.....+.+|...| .++.+++++|++++.||+|++||+.+++.+..+..+...+....+.+++.+++++.||.|++||+.
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 4566888998874 788889999999999999999999999999988888877777777777799999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 212 TGKCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 212 ~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
+++++..+.+|...|.++.+. ++++++++.||.|++||+........
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~----------------------------- 242 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD----------------------------- 242 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------------------------------
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc-----------------------------
Confidence 999999999999999999984 47899999999999999775421100
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 367 (635)
.. ...+...... .
T Consensus 243 --------------------------------------------------~~---------~~~~~~~~~~-~------- 255 (464)
T 3v7d_B 243 --------------------------------------------------HG---------EEHDYPLVFH-T------- 255 (464)
T ss_dssp ---------------------------------------------------------------CCSSEEES-C-------
T ss_pred --------------------------------------------------cc---------ccCCcceEee-c-------
Confidence 00 0000000000 0
Q ss_pred EEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc
Q psy18018 368 WEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN 447 (635)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 447 (635)
..........+.+|...+.++..+ ++++++++.|+.|++||+.+++
T Consensus 256 -~~~~~~~~~~~~~~~~~v~~~~~~---------------------------------~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 256 -PEENPYFVGVLRGHMASVRTVSGH---------------------------------GNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp -GGGCTTEEEEECCCSSCEEEEEEE---------------------------------TTEEEEEETTSCEEEEETTTTE
T ss_pred -cCCCeEEEEEccCccceEEEEcCC---------------------------------CCEEEEEeCCCeEEEEECCCCc
Confidence 011223455666777777666544 4456666666677777777788
Q ss_pred eeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEE
Q psy18018 448 LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWD 525 (635)
Q Consensus 448 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd 525 (635)
.+..+.+|...|.++.++ ++++++++.||.|++||+.+++++..+.. |...|.+++++++++++++.||.|++||
T Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWD 378 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEcCCEEEEEeCCCcEEEEE
Confidence 888889999999999885 56999999999999999999999999987 8999999999999999999999999999
Q ss_pred CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018 526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA 605 (635)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 605 (635)
+.+++..... .+...+..++|+|++++|++++ ||.|++||+++++.+..+. ..+...|++++|
T Consensus 379 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~----~~~~~~v~~v~~ 441 (464)
T 3v7d_B 379 ANDYSRKFSY------------HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI----LKDADQIWSVNF 441 (464)
T ss_dssp TTTCCEEEEE------------ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT----TTTCSEEEEEEE
T ss_pred CCCCceeeee------------cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh----ccCCCcEEEEEe
Confidence 9987644332 2466788889999999999998 8999999999999988643 467899999999
Q ss_pred CCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 606 SETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 606 s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+ ++.++++++.||. +.++.+||.
T Consensus 442 ~-~~~l~~~~~~~g~--~~i~~ldfs 464 (464)
T 3v7d_B 442 K-GKTLVAAVEKDGQ--SFLEILDFS 464 (464)
T ss_dssp E-TTEEEEEEEETTE--EEEEEEECC
T ss_pred c-CCEEEEEEEeCCe--EEEEEeecC
Confidence 7 5677778888887 678888874
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.6e-39 Score=307.01 Aligned_cols=228 Identities=24% Similarity=0.408 Sum_probs=183.1
Q ss_pred EEecCcEEEEecCCCeEEEEEccCC------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESG------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC 422 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 422 (635)
|+|++..+++|+.|+.+++|++... .....+.+|...|.+++|+
T Consensus 114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------------------------------ 163 (354)
T 2pbi_B 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT------------------------------ 163 (354)
T ss_dssp ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC------------------------------
T ss_pred ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe------------------------------
Confidence 3344444444444444444443321 2234455677778777765
Q ss_pred eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018 423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
+++..|++++.|++|++||+++++.+..+.+|...|.++.+. ++++++|+.||.|++||+++++++..+.. |
T Consensus 164 -~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~---h 239 (354)
T 2pbi_B 164 -NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET---H 239 (354)
T ss_dssp -SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC---C
T ss_pred -CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---C
Confidence 566677888888888888888899999999999999988873 46999999999999999999999998887 8
Q ss_pred cccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEE
Q psy18018 499 QSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKL 576 (635)
Q Consensus 499 ~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~i 576 (635)
...|.+++| ++++|++++.|++|++||+++++....+... .+...+.+++|+|++++|++|+.|+.|++
T Consensus 240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------SIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------TCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC---------CcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 899999999 6899999999999999999987655444321 12346889999999999999999999999
Q ss_pred EeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEE
Q psy18018 577 WDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLL 626 (635)
Q Consensus 577 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~ 626 (635)
||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+ +++|
T Consensus 311 wd~~~~~~~~~l-----~~h~~~v~~l~~spdg~~l~sgs~D~~--v~vW 353 (354)
T 2pbi_B 311 WDVLKGSRVSIL-----FGHENRVSTLRVSPDGTAFCSGSWDHT--LRVW 353 (354)
T ss_dssp EETTTCSEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTSE--EEEE
T ss_pred EECCCCceEEEE-----ECCCCcEEEEEECCCCCEEEEEcCCCC--EEec
Confidence 999999998887 589999999999999999999999998 5555
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.1e-39 Score=304.80 Aligned_cols=282 Identities=26% Similarity=0.425 Sum_probs=235.3
Q ss_pred CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018 70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC 147 (635)
Q Consensus 70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~ 147 (635)
.+..++|.+|.+.| .+++|+ +++|++|+.||+|++||+.+ ++.+..+..|...|.+
T Consensus 45 ~~~~~~l~gH~~~v-~~~~~s~d~~~l~s~s~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~ 102 (340)
T 1got_B 45 MRTRRTLRGHLAKI-YAMHWGTDSRLLLSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMT 102 (340)
T ss_dssp CCEEEEECCCSSCE-EEEEECTTSSEEEEEETTTEEEEEETTT---------------------CCEEEEEECSSSCEEE
T ss_pred chhheeecCCCCce-EEEEECCCCCEEEEEeCCCcEEEEECCC---------------------CCcceEeecCCccEEE
Confidence 34567799999998 999999 89999999999999998764 4556778899999999
Q ss_pred EEe--cCCEEEEEeCCCeEEEEeCCCcc----ceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy18018 148 VQY--DGKLVVSGAYDYMVKIWNPDTEE----CLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG 221 (635)
Q Consensus 148 l~~--~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 221 (635)
++| ++++|++++.|+.|++||+.+.+ ....+..+........+.+++.+++++.|+.|++||+.+++++..+.+
T Consensus 103 ~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence 999 89999999999999999998763 334455566666666777788899999999999999999999999999
Q ss_pred CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecC
Q psy18018 222 HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQ 301 (635)
Q Consensus 222 h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (635)
|.+.|.+++
T Consensus 183 h~~~v~~~~----------------------------------------------------------------------- 191 (340)
T 1got_B 183 HTGDVMSLS----------------------------------------------------------------------- 191 (340)
T ss_dssp CSSCEEEEE-----------------------------------------------------------------------
T ss_pred CCCceEEEE-----------------------------------------------------------------------
Confidence 999888776
Q ss_pred chhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC
Q psy18018 302 PEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~ 381 (635)
++|++.++++|+.|+.|++||+.++..+..+.+
T Consensus 192 -----------------------------------------------~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~ 224 (340)
T 1got_B 192 -----------------------------------------------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224 (340)
T ss_dssp -----------------------------------------------ECTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred -----------------------------------------------ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence 666777888888888888888888888888999
Q ss_pred CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc--CCccE
Q psy18018 382 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--HQSLT 459 (635)
Q Consensus 382 ~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~v 459 (635)
|...|.+++|+ |++++|++++.|+.|++||+++++.+..+.. +...|
T Consensus 225 h~~~v~~v~~~-------------------------------p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 225 HESDINAICFF-------------------------------PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp CSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CcCCEEEEEEc-------------------------------CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 99999999886 4555566666666666666666665555442 33468
Q ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018 460 SGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525 (635)
Q Consensus 460 ~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd 525 (635)
.++++ +++++++|+.|+.|++||+.+++.+..+.+ |...|.+++| ++.+|++|+.|+.|++||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec---CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88887 467999999999999999999999999887 9999999999 688999999999999996
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-39 Score=308.25 Aligned_cols=288 Identities=20% Similarity=0.320 Sum_probs=241.5
Q ss_pred CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018 15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS 92 (635)
Q Consensus 15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~ 92 (635)
.+..+.|+||.+.| ++++|+ |||++|++++.++. +.+||..+++.+..+..|...+ .+++|+ ++
T Consensus 45 ~~~~~~l~gH~~~v-~~~~~s----~d~~~l~s~s~Dg~--------v~iWd~~~~~~~~~~~~~~~~v-~~~~~s~~~~ 110 (340)
T 1got_B 45 MRTRRTLRGHLAKI-YAMHWG----TDSRLLLSASQDGK--------LIIWDSYTTNKVHAIPLRSSWV-MTCAYAPSGN 110 (340)
T ss_dssp CCEEEEECCCSSCE-EEEEEC----TTSSEEEEEETTTE--------EEEEETTTCCEEEEEECSSSCE-EEEEECTTSS
T ss_pred chhheeecCCCCce-EEEEEC----CCCCEEEEEeCCCc--------EEEEECCCCCcceEeecCCccE-EEEEECCCCC
Confidence 34457899999999 999999 99999999987544 4469999999999999999988 899999 99
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCC
Q psy18018 93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDT 171 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~ 171 (635)
+|++|+.|+.|++||+.+++. ..+....+.+|.+.|.++.| ++..+++++.|++|++||+.+
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREG-----------------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSB-----------------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCeEEEEECccCCC-----------------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 999999999999999876531 23456778899999999999 667799999999999999999
Q ss_pred ccceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEe
Q psy18018 172 EECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGW 248 (635)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w 248 (635)
++.+..+..+...+.. ...+.+..+++++.|+.|++||+.+++++..+.+|...|.+++|+ +++|++++.||+|++|
T Consensus 174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 9988888766554444 445567789999999999999999999999999999999999995 7899999999999999
Q ss_pred cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018 249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328 (635)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (635)
|+.........
T Consensus 254 d~~~~~~~~~~--------------------------------------------------------------------- 264 (340)
T 1got_B 254 DLRADQELMTY--------------------------------------------------------------------- 264 (340)
T ss_dssp ETTTTEEEEEE---------------------------------------------------------------------
T ss_pred ECCCCcEEEEE---------------------------------------------------------------------
Confidence 98764321000
Q ss_pred hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEE
Q psy18018 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVK 406 (635)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~ 406 (635)
...........++|+|+++++++|+.||.|++||..+++.+..+.+|...|.+++|+ +.+|++++.|+.|+
T Consensus 265 -------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 265 -------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp -------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred -------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 000011234557899999999999999999999999999999999999999999997 45788888888888
Q ss_pred EEE
Q psy18018 407 VWD 409 (635)
Q Consensus 407 iwd 409 (635)
+||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ecC
Confidence 885
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-38 Score=296.72 Aligned_cols=286 Identities=22% Similarity=0.411 Sum_probs=220.6
Q ss_pred CCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018 71 KDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148 (635)
Q Consensus 71 ~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l 148 (635)
+..++|.+|.+.| ++++|+ +++|++++.||+|++||+++ ++.+..+.+|..+|.++
T Consensus 4 ~~~~~~~~h~~~V-~~~~fsp~~~~l~s~~~dg~v~lWd~~~---------------------~~~~~~~~~~~~~v~~~ 61 (304)
T 2ynn_A 4 DIKKTFSNRSDRV-KGIDFHPTEPWVLTTLYSGRVELWNYET---------------------QVEVRSIQVTETPVRAG 61 (304)
T ss_dssp CCEEEEEEECSCE-EEEEECSSSSEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred eeEEeecCCCCce-EEEEECCCCCEEEEEcCCCcEEEEECCC---------------------CceeEEeeccCCcEEEE
Confidence 4567899999998 999999 99999999999998888764 45677888999999999
Q ss_pred Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226 (635)
Q Consensus 149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 226 (635)
+| ++++|++++.|++|++||+ .+++++..+.+|.+.|
T Consensus 62 ~~~~~~~~l~s~s~d~~i~vwd~-----------------------------------------~~~~~~~~~~~h~~~v 100 (304)
T 2ynn_A 62 KFIARKNWIIVGSDDFRIRVFNY-----------------------------------------NTGEKVVDFEAHPDYI 100 (304)
T ss_dssp EEEGGGTEEEEEETTSEEEEEET-----------------------------------------TTCCEEEEEECCSSCE
T ss_pred EEeCCCCEEEEECCCCEEEEEEC-----------------------------------------CCCcEEEEEeCCCCcE
Confidence 99 7777777777766666654 4455566778899988
Q ss_pred EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018 227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL 306 (635)
Q Consensus 227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
.+++
T Consensus 101 ~~~~---------------------------------------------------------------------------- 104 (304)
T 2ynn_A 101 RSIA---------------------------------------------------------------------------- 104 (304)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 8877
Q ss_pred hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC-ceEEeeeCCCcc
Q psy18018 307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSL 385 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~~~~~~~~~~~~ 385 (635)
|+|++.+|++|+.|+.|++||+.++ .....+.+|...
T Consensus 105 ------------------------------------------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 105 ------------------------------------------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ------------------------------------------ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ------------------------------------------EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 5556666777777777777777665 344667889999
Q ss_pred eeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-cCCccEEEEEe
Q psy18018 386 TSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMEL 464 (635)
Q Consensus 386 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~ 464 (635)
|.+++|++. ++..|++|+.|++|++||+.++.....+. +|...+..+.+
T Consensus 143 v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 143 VMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (304)
T ss_dssp EEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE
T ss_pred EEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE
Confidence 999998631 23345555555555555555544444433 45567777766
Q ss_pred ----cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018 465 ----RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS 538 (635)
Q Consensus 465 ----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 538 (635)
++.++++++.|++|++||+++++++..+.+ |...|.+++| ++++|++++.||+|++||+++++....+..
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~- 268 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV- 268 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-
Confidence 356999999999999999999999999988 8899999999 578999999999999999999988877654
Q ss_pred eecCceeEEeccCceecccccCCCe--EEEEecCCCeEEEEeCCCC
Q psy18018 539 FILNPFYFLIYSQPLLCPHLQFNSR--FVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 539 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~v~iwd~~~~ 582 (635)
|...+.+++|+|+++ ++++|+.|| +.+|++.+.
T Consensus 269 ----------~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 269 ----------GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp ----------SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred ----------CCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 567899999999885 677777555 888887653
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.9e-39 Score=303.49 Aligned_cols=301 Identities=23% Similarity=0.418 Sum_probs=233.5
Q ss_pred CCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018 72 DPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148 (635)
Q Consensus 72 ~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l 148 (635)
+..+|.+|.+.| ++++|+ +++|+||+.|++|++||+.... ...+.++..+.+|...|.++
T Consensus 9 l~~~l~gH~~~V-~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~----------------~~~~~~~~~~~~h~~~v~~~ 71 (319)
T 3frx_A 9 LRGTLEGHNGWV-TSLATSAGQPNLLLSASRDKTLISWKLTGDD----------------QKFGVPVRSFKGHSHIVQDC 71 (319)
T ss_dssp EEEEECCCSSCE-EEEEECSSCTTEEEEEETTSEEEEEEEEEET----------------TEEEEEEEEEECCSSCEEEE
T ss_pred EEEEEccccceE-EEEEccCCCccEEEEecCCccEEEecCCCCC----------------ccccccceEEeCCcccEEEE
Confidence 456789999998 999998 4799999999999999975321 01245678899999999999
Q ss_pred Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226 (635)
Q Consensus 149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 226 (635)
+| ++++|++++.|++|++||+. +++++..+.+|...|
T Consensus 72 ~~s~dg~~l~s~s~D~~v~~wd~~-----------------------------------------~~~~~~~~~~h~~~v 110 (319)
T 3frx_A 72 TLTADGAYALSASWDKTLRLWDVA-----------------------------------------TGETYQRFVGHKSDV 110 (319)
T ss_dssp EECTTSSEEEEEETTSEEEEEETT-----------------------------------------TTEEEEEEECCSSCE
T ss_pred EECCCCCEEEEEeCCCEEEEEECC-----------------------------------------CCCeeEEEccCCCcE
Confidence 99 78888888877777777654 444556677899988
Q ss_pred EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018 227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL 306 (635)
Q Consensus 227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
.+++
T Consensus 111 ~~~~---------------------------------------------------------------------------- 114 (319)
T 3frx_A 111 MSVD---------------------------------------------------------------------------- 114 (319)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 8877
Q ss_pred hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018 307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 386 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v 386 (635)
++|++.++++|+.|+.|++||+. ++.+..+.+|...+
T Consensus 115 ------------------------------------------~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v 151 (319)
T 3frx_A 115 ------------------------------------------IDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWV 151 (319)
T ss_dssp ------------------------------------------ECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ------------------------------------------EcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcE
Confidence 44455566666666666666664 45566777888888
Q ss_pred eEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-
Q psy18018 387 SGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR- 465 (635)
Q Consensus 387 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~- 465 (635)
.++.+.+..- ..+++..+++++.|+.|++||+.+++....+.+|...|.+++++
T Consensus 152 ~~~~~~~~~~-------------------------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 152 SQVRVVPNEK-------------------------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206 (319)
T ss_dssp EEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT
T ss_pred EEEEEccCCC-------------------------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC
Confidence 8888763211 01355678889999999999999999899999999999999984
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecC
Q psy18018 466 -NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILN 542 (635)
Q Consensus 466 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 542 (635)
+++|++++.||.|++||+.+++.+..+.. ...|.+++| ++.++++++.+ .+++|++..+.....+......
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~- 280 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG- 280 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEEC----CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecC----CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-
Confidence 66999999999999999999999888874 467999999 68888888755 5999999987766555432111
Q ss_pred ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018 543 PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~ 582 (635)
....+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 281 --~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 281 --YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp --CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred --cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 11235667899999999999999999999999998764
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.9e-38 Score=297.30 Aligned_cols=230 Identities=20% Similarity=0.370 Sum_probs=188.7
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
|+|+++++++|+.|+.|++||+.+++.+..+.+|...|.+++++ |++.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-------------------------------~~~~~ 121 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-------------------------------KKASM 121 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-------------------------------TTSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-------------------------------CCCCE
Confidence 66778888888889999999998898889999999999999886 34455
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC--------CEEEEEeCCCcEEEEECCCCceeEEecCCCcccc
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--------NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQS 500 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 500 (635)
+++++.|++|++||++ ++.+..+.+|...+.++.+.+ ..+++++.|+.|++||+.+.+....+.+ |..
T Consensus 122 l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~ 197 (319)
T 3frx_A 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG---HNS 197 (319)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC---CCS
T ss_pred EEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC---CCC
Confidence 6666666666666664 456677888999999988743 3899999999999999999998888887 899
Q ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEe
Q psy18018 501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578 (635)
Q Consensus 501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd 578 (635)
.|.++++ ++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++.+|++++.+ .+++|+
T Consensus 198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~la~~~~~-~i~v~~ 264 (319)
T 3frx_A 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS------------AQDEVFSLAFSPNRYWLAAATAT-GIKVFS 264 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------------CCSCEEEEEECSSSSEEEEEETT-EEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEcCCCCEEEEEcCC-CcEEEE
Confidence 9999999 68999999999999999999988666553 24679999999999999988755 599999
Q ss_pred CCCCceEEeeeecc---CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 579 VKTGEFIRNLVSLD---SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 579 ~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
+..+..+..+.... ...+...+.+++|+|||++|++|+.||. +++|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~--i~vWd~ 315 (319)
T 3frx_A 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV--IRVWQV 315 (319)
T ss_dssp ETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC--EEEEEE
T ss_pred eCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce--EEEEEE
Confidence 99888777664221 1234667999999999999999999998 555544
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-39 Score=314.14 Aligned_cols=311 Identities=21% Similarity=0.349 Sum_probs=226.5
Q ss_pred EEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC
Q psy18018 124 LRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD 201 (635)
Q Consensus 124 i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (635)
+..|+.....+.+.+.+|.++|++++| ++++|++|+.||+|++||+.
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~------------------------------- 96 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL------------------------------- 96 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-------------------------------
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-------------------------------
Confidence 345666677888999999999999999 77788888877777777654
Q ss_pred CCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccc
Q psy18018 202 DNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279 (635)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (635)
+++.+..+.+|...|.+++|+ +++|++++.|+.+++|++.....
T Consensus 97 ----------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~------------------------ 142 (380)
T 3iz6_a 97 ----------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD------------------------ 142 (380)
T ss_dssp ----------TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS------------------------
T ss_pred ----------CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc------------------------
Confidence 444455667787777766652 55555555555555555432100
Q ss_pred cccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe
Q psy18018 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG 359 (635)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 359 (635)
T Consensus 143 -------------------------------------------------------------------------------- 142 (380)
T 3iz6_a 143 -------------------------------------------------------------------------------- 142 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018 360 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439 (635)
Q Consensus 360 ~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 439 (635)
.+ ........+.+|...+.++.|.+. ++..|++++.|++|+
T Consensus 143 -~~--------~~~~~~~~~~gh~~~v~~~~~~~~------------------------------~~~~l~s~s~D~~i~ 183 (380)
T 3iz6_a 143 -RD--------GNMPVSRVLTGHKGYASSCQYVPD------------------------------QETRLITGSGDQTCV 183 (380)
T ss_dssp -CC--------CSSTTCCBCCCCSSCCCCCBCCSS------------------------------SSSCEEEECTTSCEE
T ss_pred -cc--------CCccceeeccCCCcceEEEEEecC------------------------------CCCEEEEECCCCcEE
Confidence 00 001123456678888877777521 122344555555555
Q ss_pred EEeCCCCceeeee-----ccCCccEEEEEe---cCCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEEEEEe--c
Q psy18018 440 VWEAESGNLRHTL-----MGHQSLTSGMEL---RNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCLQF--N 508 (635)
Q Consensus 440 ~~d~~~~~~~~~~-----~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~--~ 508 (635)
+||+.+++.+..+ .+|...|.++.+ +++++++|+.|+.|++||++ ..+.+..+.+ |...|.+++| +
T Consensus 184 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFPD 260 (380)
T ss_dssp EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECTT
T ss_pred EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEecC
Confidence 5555555555444 578889999987 46799999999999999997 4567777877 8899999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018 509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 588 (635)
+++|++++.|++|++||+++++.+..+....... ..+...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN----DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS----CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEEeccccccc----ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 8999999999999999999998776654421111 012345899999999999999999999999999999988776
Q ss_pred eeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 589 VSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
.... .+|.+.|.+++|+|||++|++|+.||+ +++|.+
T Consensus 337 ~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~ 373 (380)
T 3iz6_a 337 GTLQ-NSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAF 373 (380)
T ss_dssp CCSC-SSCCCCCCEEEECSSSSEEEEECTTSC--EEEEEC
T ss_pred eccc-CCCCCceEEEEECCCCCEEEEeeCCCC--EEEEec
Confidence 4322 368899999999999999999999999 455543
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=315.66 Aligned_cols=333 Identities=18% Similarity=0.250 Sum_probs=251.0
Q ss_pred cEEEEeCCCCeEEEEeeCCCcceEEEEe--cCC-EEEEEeCCCeEEEEeC----CCcc------ceeeccc---------
Q psy18018 123 TLRVWHIESGECLHVLVGHLAAVRCVQY--DGK-LVVSGAYDYMVKIWNP----DTEE------CLHAELQ--------- 180 (635)
Q Consensus 123 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~-~l~s~~~dg~v~iwd~----~~~~------~~~~~~~--------- 180 (635)
.+.+|+++..........|.++|++++| +++ +|++++.||.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 3456666555555455567799999999 788 9999999999999999 8877 3333333
Q ss_pred -cc-eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecc
Q psy18018 181 -ET-EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIG 258 (635)
Q Consensus 181 -~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 258 (635)
+. .+....+.+++.+|++++.||.|++|| .+++.+..+.+|...|.+++|
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~--------------------------- 157 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW--------------------------- 157 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEE---------------------------
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEE---------------------------
Confidence 23 455555566778999999999999999 678888889999998888885
Q ss_pred ccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccc
Q psy18018 259 QLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRN 338 (635)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (635)
T Consensus 158 -------------------------------------------------------------------------------- 157 (425)
T 1r5m_A 158 -------------------------------------------------------------------------------- 157 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc---------------eeEEEEeCCEEEEEeCCC
Q psy18018 339 KKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL---------------TSGMELRNNILVSGNADS 403 (635)
Q Consensus 339 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~l~s~~~dg 403 (635)
+|++++|++++.||.|++||+.+++.+..+..+... +.++++.
T Consensus 158 -----------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 215 (425)
T 1r5m_A 158 -----------NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV----------- 215 (425)
T ss_dssp -----------CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE-----------
T ss_pred -----------CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc-----------
Confidence 333444444444444555554444444444433332 3333332
Q ss_pred cEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEE
Q psy18018 404 TVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVW 481 (635)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw 481 (635)
++ ..+++++.++.|++||+.+++....+.+|...+.++.++ ++++++++.|+.|++|
T Consensus 216 --------------------~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 216 --------------------DD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp --------------------ET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred --------------------CC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 33 347777888888888988888888899999999999884 6699999999999999
Q ss_pred ECCCCceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018 482 DIVSGQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559 (635)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 559 (635)
|+.+++.+..+.. |...|.+++|+ + ++++++.|+.|++||+++++.+..+.. |...|.+++|+
T Consensus 275 d~~~~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~s 339 (425)
T 1r5m_A 275 HGGNGNSQNCFYG---HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-----------DGVPIFAGRIS 339 (425)
T ss_dssp CSSSBSCSEEECC---CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-----------TTCCEEEEEEC
T ss_pred ECCCCccceEecC---CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-----------CCccEEEEEEc
Confidence 9999998888876 88899999993 5 999999999999999999887665543 67899999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCc--------------------eEEeeeeccCCCCCc--eEEEEEeCCCCeEEEEccC
Q psy18018 560 FNSRFVITSSDDGTVKLWDVKTGE--------------------FIRNLVSLDSGGSGG--VVWRIRASETKLVCAVGSR 617 (635)
Q Consensus 560 ~~~~~l~~~~~d~~v~iwd~~~~~--------------------~~~~~~~~~~~~~~~--~i~~l~~s~d~~~l~~~~~ 617 (635)
|++++|++++.||.|++||+.+++ .+..+ ..|.. .|.+++|+|++++|++++.
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-----QSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-----CCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-----cCcccCCceEEEEccCCCceEEEEec
Confidence 999999999999999999999988 77777 45655 9999999999999999999
Q ss_pred CCeeEeEEEEEee
Q psy18018 618 NGTEETKLLVLDF 630 (635)
Q Consensus 618 dg~~~~~l~~~d~ 630 (635)
||. |..||+
T Consensus 415 dg~----i~iw~~ 423 (425)
T 1r5m_A 415 LQE----GSVVAI 423 (425)
T ss_dssp SSC----CEEEEC
T ss_pred Cce----EEEEee
Confidence 998 444444
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-37 Score=311.66 Aligned_cols=350 Identities=25% Similarity=0.404 Sum_probs=269.5
Q ss_pred eecCCC-CCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018 65 WRTRPI-KDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA 143 (635)
Q Consensus 65 wd~~~~-~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~ 143 (635)
|..... .....+.+|.+.++.|++|++++|++|+.||+|++||+.+ ++++..+.+|.+
T Consensus 105 w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~---------------------~~~~~~~~~h~~ 163 (464)
T 3v7d_B 105 WYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSIN---------------------KKFLLQLSGHDG 163 (464)
T ss_dssp HHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSS
T ss_pred hcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCC---------------------CcEEEEEeCCCc
Confidence 543332 3456899999998899999999999999999888888764 566788889999
Q ss_pred ceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeec---cCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018 144 AVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGY---ALRSRIVSGSDDNTLKVWSATTGKCLRTL 219 (635)
Q Consensus 144 ~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 219 (635)
+|++++| .+..|++++.||+|++||+.+++.+..+..+...+....+ +++..+++++.|+.|++||+.+++.....
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 9999999 4559999999999999999999988888766555544444 35588999999999999999887655433
Q ss_pred eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018 220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF 299 (635)
Q Consensus 220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (635)
........ ........
T Consensus 244 ~~~~~~~~------------------~~~~~~~~---------------------------------------------- 259 (464)
T 3v7d_B 244 GEEHDYPL------------------VFHTPEEN---------------------------------------------- 259 (464)
T ss_dssp ---CCSSE------------------EESCGGGC----------------------------------------------
T ss_pred cccCCcce------------------EeeccCCC----------------------------------------------
Confidence 21111000 00000000
Q ss_pred cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018 300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 379 (635)
.........+...+.++++++.++++|+.||.|++||+.+++.+..+
T Consensus 260 ---------------------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 260 ---------------------------------PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306 (464)
T ss_dssp ---------------------------------TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---------------------------------eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 00001123355566778999999999999999999999999999999
Q ss_pred eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018 380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459 (635)
Q Consensus 380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 459 (635)
.+|...|.+++++ |+++++++++.|+.|++||+.+++.+..+.+|...|
T Consensus 307 ~~~~~~v~~~~~~-------------------------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 307 SGHTDRIYSTIYD-------------------------------HERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp CCCSSCEEEEEEE-------------------------------TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCCCCCEEEEEEc-------------------------------CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 9999999988876 566678888888888888988899999999999999
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018 460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF 539 (635)
Q Consensus 460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 539 (635)
.++.++++++++++.||.|++||+.+++....... .+...+.++..+++++++++ ||.|++||+++++.+......
T Consensus 356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~- 431 (464)
T 3v7d_B 356 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK- 431 (464)
T ss_dssp EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT-
T ss_pred EEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc-
Confidence 99999999999999999999999998877666542 23444555666899999998 899999999999988764332
Q ss_pred ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
|...|.+++|+ +..++++++.||.+.+|
T Consensus 432 ---------~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 432 ---------DADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ---------TCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ---------CCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 57889999997 55666677777766554
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=300.24 Aligned_cols=298 Identities=23% Similarity=0.356 Sum_probs=211.9
Q ss_pred CCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEe-eC-CCcceE
Q psy18018 69 PIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL-VG-HLAAVR 146 (635)
Q Consensus 69 ~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l-~~-h~~~v~ 146 (635)
+.++++.|++|.+.| .+++|++.+||+|+.|++|++||+.++. .+....+ .+ |..+|.
T Consensus 3 ~~~~~~~~~~h~~~v-~~~~~s~~~las~~~D~~i~lw~~~~~~-------------------~~~~~~~~~~~h~~~v~ 62 (330)
T 2hes_X 3 SINLIKSLKLYKEKI-WSFDFSQGILATGSTDRKIKLVSVKYDD-------------------FTLIDVLDETAHKKAIR 62 (330)
T ss_dssp CCEEEEEEECCSSCE-EEEEEETTEEEEEESSSCEEEEECSSSC-------------------CEEEEEECTTCCCSCEE
T ss_pred ccccceeeccCCCce-eeeccCCCEEEEEcCCCEEEEEEecCCC-------------------eEEEEEEecCCccCCEE
Confidence 455678899999998 9999996699999999999999987542 2334445 34 999999
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018 147 CVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG 224 (635)
Q Consensus 147 ~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 224 (635)
+++| ++++|++++.|++|++||+..... +....+++..+.+|..
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~----------------------------------~~~~~~~~~~~~~h~~ 108 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESAD----------------------------------RTFEMDLLAIIEGHEN 108 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC-----------------------------------------CCCEEEEEEC----
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcC----------------------------------ccccceeEEEEcCCCC
Confidence 9999 899999999999999999754210 0013455677888999
Q ss_pred CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018 225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304 (635)
Q Consensus 225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (635)
.|.+++|
T Consensus 109 ~V~~v~~------------------------------------------------------------------------- 115 (330)
T 2hes_X 109 EVKGVAW------------------------------------------------------------------------- 115 (330)
T ss_dssp CEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEE-------------------------------------------------------------------------
Confidence 8888875
Q ss_pred hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC----CceEEeee
Q psy18018 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES----GNLRHTLM 380 (635)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~----~~~~~~~~ 380 (635)
+|++++|++|+.|+.|++||+.. .+++..+.
T Consensus 116 ---------------------------------------------sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 116 ---------------------------------------------SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp ---------------------------------------------CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred ---------------------------------------------CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 44444555555555555555421 23456678
Q ss_pred CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCcc
Q psy18018 381 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSL 458 (635)
Q Consensus 381 ~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~ 458 (635)
+|...|.+++|+ |++.+|++++.|++|++||..++ +.+..+.+|...
T Consensus 151 ~h~~~v~~v~~~-------------------------------p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 151 EHSQDVKHVIWH-------------------------------PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp CCSSCEEEEEEC-------------------------------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred cCCCceEEEEEC-------------------------------CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 899999999886 34445555555555566655444 567788999999
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCC--------ceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEE
Q psy18018 459 TSGMELRN----NILVSGNADSTVKVWDIVSG--------QCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWD 525 (635)
Q Consensus 459 v~~~~~~~----~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd 525 (635)
|.++.+++ .++++++.|++|++||+..+ .+...+. ..|...|.+++| ++.+|++++.||.|++|+
T Consensus 200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP--DVHKRQVYNVAWGFNGLIASVGADGVLAVYE 277 (330)
T ss_dssp EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC--SCCSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc--cccccceEEEEEcCCCEEEEEeCCCEEEEEE
Confidence 99999864 48999999999999998754 2233332 237889999999 467899999999999999
Q ss_pred CCCCce--eeeeccceecCceeEEeccC-ceecccccC--CCeEEEEecCCCeEEEEeCCC
Q psy18018 526 VKTGEF--STPLMSSFILNPFYFLIYSQ-PLLCPHLQF--NSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 526 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~d~~v~iwd~~~ 581 (635)
..+++. ..... ..|.. .|.+++|+| ++++||+|+.||+|+|||+++
T Consensus 278 ~~~~~~~~~~~~~----------~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKVFAKRA----------LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEEEEEES----------CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEeccc----------cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 887642 11111 12555 899999999 789999999999999999864
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=315.86 Aligned_cols=333 Identities=19% Similarity=0.252 Sum_probs=257.4
Q ss_pred eeeeeecCCCCCCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeec----CCCC------CCc
Q psy18018 6 VEINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRT----RPIK------DPK 74 (635)
Q Consensus 6 ~~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~----~~~~------~~~ 74 (635)
+.+.|+............|.+.| +|++|+ |+|+ +||+++.++ .+.+||. .+++ ...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s----~~~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNI-VSSTWN----PLDESILAYGEKNS--------VARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp --------CCCEECEEEEECSCC-SEEEEC----SSCTTEEEEEETBT--------EEEEEEEEEC------CEEEEEEE
T ss_pred ccccccchhhhhheeeeeccCce-EEEEEC----CCCCcEEEEecCCc--------eEEEEEEecccCCccccccccccc
Confidence 44555544443333444556898 999999 9999 999998654 4456999 8877 344
Q ss_pred eeec----------cCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCC
Q psy18018 75 VLKG----------HDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL 142 (635)
Q Consensus 75 ~l~~----------h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~ 142 (635)
.+.. |.+.+ ++++|+ +++|++++.||.|++||. +++.+..+.+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~i~~~----------------------~~~~~~~~~~~~ 149 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQV-TCLAWSHDGNSIVTGVENGELRLWNK----------------------TGALLNVLNFHR 149 (425)
T ss_dssp EEECCCCCC------CBCE-EEEEECTTSSEEEEEETTSCEEEEET----------------------TSCEEEEECCCC
T ss_pred cccccccccccccCCCCce-EEEEEcCCCCEEEEEeCCCeEEEEeC----------------------CCCeeeeccCCC
Confidence 4544 67677 999999 899999999999988883 245677788999
Q ss_pred cceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccccee---------------EEeeeccCCCEEEEEeCCCcE
Q psy18018 143 AAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEV---------------ELSHGYALRSRIVSGSDDNTL 205 (635)
Q Consensus 143 ~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~dg~i 205 (635)
.+|.+++| ++++|++++.||.|++||+.+++.+..+..+... .....+.+++.+++++.+|.|
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 99999999 8999999999999999999999887766655443 444455566778888888888
Q ss_pred EEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018 206 KVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285 (635)
Q Consensus 206 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (635)
++||+.+++.+..+.+|...|.+++
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~------------------------------------------------------- 254 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLE------------------------------------------------------- 254 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEE-------------------------------------------------------
T ss_pred EEEEcCCCceeeeeccCCCceEEEE-------------------------------------------------------
Confidence 8888888777777777777766655
Q ss_pred eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365 (635)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 365 (635)
++|++++|++++.||.|
T Consensus 255 ---------------------------------------------------------------~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 255 ---------------------------------------------------------------FNDTNKLLLSASDDGTL 271 (425)
T ss_dssp ---------------------------------------------------------------EETTTTEEEEEETTSCE
T ss_pred ---------------------------------------------------------------ECCCCCEEEEEcCCCEE
Confidence 66677778888888888
Q ss_pred EEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC
Q psy18018 366 RVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES 445 (635)
Q Consensus 366 ~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 445 (635)
++||+.+++.+..+..|...+.+++|+ |++ .+++++.|+.|++||+.+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~-------------------------------~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQSIVSASWV-------------------------------GDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEECSSSBSCSEEECCCSSCEEEEEEE-------------------------------TTT-EEEEEETTSEEEEEETTT
T ss_pred EEEECCCCccceEecCCCccEEEEEEC-------------------------------CCC-EEEEEeCCCcEEEEECCC
Confidence 888888888888888888889888876 344 567777777888888888
Q ss_pred CceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCc--------------------eeEEecCCCcccc--c
Q psy18018 446 GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQ--------------------CLQTLSGRNKHQS--A 501 (635)
Q Consensus 446 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~--~ 501 (635)
++.+..+..|...+.++.++ ++++++++.||.|++||+.+++ .+..+.. |.. .
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 396 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS---SQDNDY 396 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC---TTCCCC
T ss_pred CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC---cccCCc
Confidence 88888888899999999885 6799999999999999999887 7788876 655 8
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECC
Q psy18018 502 VTCLQF--NSRFVITSSDDGTVKLWDVK 527 (635)
Q Consensus 502 v~~~~~--~~~~l~~~~~d~~i~vwd~~ 527 (635)
|.+++| ++++|++++.||.|++|+++
T Consensus 397 v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999 68899999999999999986
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.8e-39 Score=307.03 Aligned_cols=284 Identities=17% Similarity=0.214 Sum_probs=216.8
Q ss_pred eCCCcceEEEEe--cCCEEEEEeC------CCeEEEEeCCCccceeec----cccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018 139 VGHLAAVRCVQY--DGKLVVSGAY------DYMVKIWNPDTEECLHAE----LQETEVELSHGYALRSRIVSGSDDNTLK 206 (635)
Q Consensus 139 ~~h~~~v~~l~~--~~~~l~s~~~------dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 206 (635)
.+|...|++++| ||++||+++. |++|++|+..++.....+ ..+...+..+.+.+++.+++++.||+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE 118 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence 479999999999 9999999997 788999998877654332 2344445666666777888899999999
Q ss_pred EEECCCCeEEE----EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018 207 VWSATTGKCLR----TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282 (635)
Q Consensus 207 vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (635)
+||+.+++... ...+|...|.+++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~---------------------------------------------------- 146 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLS---------------------------------------------------- 146 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEE----------------------------------------------------
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEE----------------------------------------------------
Confidence 99998876542 2335666666555
Q ss_pred ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD 362 (635)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 362 (635)
|+|++++|++|+.|
T Consensus 147 ------------------------------------------------------------------~spdg~~l~sgs~d 160 (357)
T 4g56_B 147 ------------------------------------------------------------------VFSDGTQAVSGGKD 160 (357)
T ss_dssp ------------------------------------------------------------------ECSSSSEEEEEETT
T ss_pred ------------------------------------------------------------------ECCCCCEEEEEeCC
Confidence 78888999999999
Q ss_pred CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018 363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE 442 (635)
Q Consensus 363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d 442 (635)
+.|++||+.+++.+..+.+|...|.+++|+++ ....+++++.|+.|++||
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~------------------------------~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG------------------------------KDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------CSSCEEEEETTSCEEECC
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccC------------------------------CCceeeeeccCCceEEEE
Confidence 99999999999999999999999999998621 112355556666666666
Q ss_pred CCCCceeeee--ccCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cC-CEEEE
Q psy18018 443 AESGNLRHTL--MGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NS-RFVIT 514 (635)
Q Consensus 443 ~~~~~~~~~~--~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~ 514 (635)
+++++....+ ..|...+.+++++ +.++++|+.|+.|++||+++++++..+.. |...|++++| ++ ++|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp TTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEE
T ss_pred CCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEE
Confidence 6666655444 3466788899885 45899999999999999999999999887 8899999999 34 68999
Q ss_pred EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceE
Q psy18018 515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFI 585 (635)
Q Consensus 515 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~ 585 (635)
++.|++|+|||+++++.+..+ .|...|++++|+| |+++|++++.||+|++||+.+....
T Consensus 288 gs~D~~i~iwd~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EETTSCEEEECTTSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EeCCCEEEEEECCCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 999999999999988765433 3788999999998 8999999999999999999765433
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=301.32 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=196.2
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF 419 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 419 (635)
...++|+|++ .+++|+.||.|++||+.+++.+. ...+|...|.+++|+
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--------------------------- 136 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--------------------------- 136 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC---------------------------
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC---------------------------
Confidence 4567788885 68899999999999999887543 345899999999876
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018 420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRN 496 (635)
Q Consensus 420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 496 (635)
|++++|++|+.|++|++||+.+++.+..+.+|...|.++.++ + .++++++.|++|++||++++++...+...
T Consensus 137 ----pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~- 211 (344)
T 4gqb_B 137 ----SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS- 211 (344)
T ss_dssp ----TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---
T ss_pred ----CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-
Confidence 677788888888999999999999999999999999999984 3 48999999999999999999988877532
Q ss_pred cccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCC
Q psy18018 497 KHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDG 572 (635)
Q Consensus 497 ~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 572 (635)
.+...+.+++| ++++|++|+.||.|++||+++++.+..+.. |...|++++|+|++ ++||+|+.|+
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-----------h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-----------HSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-----------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-----------CCCCEEEEEEccCCCeEEEEEeCCC
Confidence 25567888988 367899999999999999999887766654 78899999999998 5899999999
Q ss_pred eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEEEeee
Q psy18018 573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+|+|||+.+++++. + .+|.+.|++|+|+|+++ +|++++.||+ +++|.++-+
T Consensus 281 ~i~vwd~~~~~~~~-~-----~~H~~~V~~v~~sp~~~~llas~s~D~~--v~~w~v~~~ 332 (344)
T 4gqb_B 281 SLAVLDSSLSELFR-S-----QAHRDFVRDATWSPLNHSLLTTVGWDHQ--VVHHVVPTE 332 (344)
T ss_dssp CEEEECTTCCEEEE-E-----CCCSSCEEEEEECSSSTTEEEEEETTSC--EEEEECCC-
T ss_pred eEEEEECCCCcEEE-E-----cCCCCCEEEEEEeCCCCeEEEEEcCCCe--EEEEECCCC
Confidence 99999999988654 3 47999999999999986 6789999999 667766543
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-38 Score=305.51 Aligned_cols=307 Identities=14% Similarity=0.178 Sum_probs=219.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeC------ceeEEEecccceeeeccccccc
Q psy18018 192 LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGST------DRTLKGWSNAERILAIGQLIDS 263 (635)
Q Consensus 192 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~ 263 (635)
..+.++.+..+.....|++.... ..+|...|.+++| +|.+|++++. |+.+++|+..+.......
T Consensus 15 ~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---- 86 (357)
T 4g56_B 15 TENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL---- 86 (357)
T ss_dssp -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG----
T ss_pred ccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE----
Confidence 34556666677788899876433 3579999999999 5899999998 678888876543211000
Q ss_pred cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018 264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV 343 (635)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (635)
......+...
T Consensus 87 ----------------------------------------------------------------------~~~~~~~~~~ 96 (357)
T 4g56_B 87 ----------------------------------------------------------------------CTAGVQTEAG 96 (357)
T ss_dssp ----------------------------------------------------------------------CSEEEECSSC
T ss_pred ----------------------------------------------------------------------ecccCCCCCC
Confidence 0000112223
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF 419 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 419 (635)
...++|+|++. +++++.||.|++||+.+++... ...+|...|.+++|+
T Consensus 97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s--------------------------- 148 (357)
T 4g56_B 97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF--------------------------- 148 (357)
T ss_dssp EEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC---------------------------
T ss_pred EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC---------------------------
Confidence 45678999876 4567789999999998876542 345788888888875
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018 420 RICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRN 496 (635)
Q Consensus 420 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 496 (635)
|++++|++++.|+.|++||+.+++.+..+.+|...|.++++. + .++++++.|+.|++||++++++...+.. .
T Consensus 149 ----pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~ 223 (357)
T 4g56_B 149 ----SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-C 223 (357)
T ss_dssp ----SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-T
T ss_pred ----CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-c
Confidence 677788888888999999999999999999999999999984 3 4899999999999999999887766543 2
Q ss_pred cccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCC
Q psy18018 497 KHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDG 572 (635)
Q Consensus 497 ~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 572 (635)
.+...+.+++|+ +.+|++|+.|+.|++||+++++....+.. |...|++++|+|++ ++||+|+.|+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-----------HSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-----------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec-----------cceeEEEEEEcCCCCCEEEEEeCCC
Confidence 366789999993 67899999999999999999887766554 68899999999987 6899999999
Q ss_pred eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCCCeeEeEEEEE
Q psy18018 573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~dg~~~~~l~~~ 628 (635)
+|+|||+++++.+..+ +|.+.|++|+|+| |+.+|++++.||+ +++|.+
T Consensus 293 ~i~iwd~~~~~~~~~~------~H~~~V~~vafsP~d~~~l~s~s~Dg~--v~iW~~ 341 (357)
T 4g56_B 293 TVAVLDADFSEVFRDL------SHRDFVTGVAWSPLDHSKFTTVGWDHK--VLHHHL 341 (357)
T ss_dssp CEEEECTTSCEEEEEC------CCSSCEEEEEECSSSTTEEEEEETTSC--EEEEEC
T ss_pred EEEEEECCCCcEeEEC------CCCCCEEEEEEeCCCCCEEEEEcCCCe--EEEEEC
Confidence 9999999999887655 6899999999998 8999999999998 455544
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=300.91 Aligned_cols=279 Identities=19% Similarity=0.237 Sum_probs=214.5
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc-------c----ceeeccccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE-------E----CLHAELQETEVELSHGYALRSRIVSGSDDNTLK 206 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 206 (635)
.|...|.+++| ||++|++++ |+++++||.... . ...........+..+.+.+++++++++.||.|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~ 106 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVE 106 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEE
Confidence 67888999999 899999887 778888873211 0 111111122335556666778999999999999
Q ss_pred EEECCCCeEEEE----EeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018 207 VWSATTGKCLRT----LIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282 (635)
Q Consensus 207 vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (635)
+||+.+++.+.. +.+|.+.|.+++
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~---------------------------------------------------- 134 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVS---------------------------------------------------- 134 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEE----------------------------------------------------
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEE----------------------------------------------------
Confidence 999998875543 347888877766
Q ss_pred ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD 362 (635)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 362 (635)
|+|++++|++|+.|
T Consensus 135 ------------------------------------------------------------------~spdg~~l~sgs~d 148 (344)
T 4gqb_B 135 ------------------------------------------------------------------VLSSGTQAVSGSKD 148 (344)
T ss_dssp ------------------------------------------------------------------ECTTSSEEEEEETT
T ss_pred ------------------------------------------------------------------ECCCCCEEEEEeCC
Confidence 77888899999999
Q ss_pred CeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC-cEEEEEeCCCcEEEE
Q psy18018 363 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG-VHVVSGSLDTSIRVW 441 (635)
Q Consensus 363 g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~ 441 (635)
+.|++||+.+++++..+.+|...|.+++|++ ++ ..+++++.|++|++|
T Consensus 149 ~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~-------------------------------~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 149 ICIKVWDLAQQVVLSSYRAHAAQVTCVAASP-------------------------------HKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECS-------------------------------SCTTEEEEEETTSCEEEE
T ss_pred CeEEEEECCCCcEEEEEcCcCCceEEEEecC-------------------------------CCCCceeeeccccccccc
Confidence 9999999999999999999999999999862 22 234555566666666
Q ss_pred eCCCCceeeeec--cCCccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cC-CEEE
Q psy18018 442 EAESGNLRHTLM--GHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NS-RFVI 513 (635)
Q Consensus 442 d~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~ 513 (635)
|+++++....+. .|...+.++.++ ++++++|+.||.|++||+++++++..+.+ |...|++++| ++ ++|+
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEE
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEE
Confidence 666666665553 345567888874 45899999999999999999999999988 8999999999 44 6899
Q ss_pred EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe-EEEEecCCCeEEEEeCCCCc
Q psy18018 514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVKLWDVKTGE 583 (635)
Q Consensus 514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~iwd~~~~~ 583 (635)
+++.|++|++||+++++... + ..|...|++++|+|+++ +|++++.|++|++|++.+..
T Consensus 275 sgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99999999999999887543 2 24789999999999986 67799999999999998754
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-38 Score=304.57 Aligned_cols=290 Identities=22% Similarity=0.335 Sum_probs=238.9
Q ss_pred CCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CC
Q psy18018 15 IKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GS 92 (635)
Q Consensus 15 ~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~ 92 (635)
.+..+.|.||.+.| .|++|+ |++++||+++.++ .+.+||..+++..+.+..|...+ .+++|+ ++
T Consensus 54 ~~~~~~l~gH~~~V-~~~~~s----~d~~~l~s~s~Dg--------~v~vWd~~~~~~~~~~~~~~~~v-~~~~~sp~g~ 119 (354)
T 2pbi_B 54 MKTRRTLKGHGNKV-LCMDWC----KDKRRIVSSSQDG--------KVIVWDSFTTNKEHAVTMPCTWV-MACAYAPSGC 119 (354)
T ss_dssp CCEEEEEECCSSCE-EEEEEC----TTSSEEEEEETTS--------EEEEEETTTCCEEEEEECSSSCC-CEEEECTTSS
T ss_pred cEEEEEecCCCCeE-EEEEEC----CCCCEEEEEeCCC--------eEEEEECCCCCcceEEecCCCCE-EEEEECCCCC
Confidence 34557899999999 999999 9999999998654 44569999999999999999888 899999 99
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC
Q psy18018 93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD 170 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~ 170 (635)
+||+|+.|+.+++|++..... .........+.+|.+.|.+++| ++..|++++.|++|++||+.
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~ 184 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKN---------------ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTT---------------CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEEeeCCCCEEEEEEecccc---------------ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999864320 0112345667789999999999 78899999999999999999
Q ss_pred CccceeeccccceeEEeeecc---CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeE
Q psy18018 171 TEECLHAELQETEVELSHGYA---LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTL 245 (635)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 245 (635)
+++.+..+..+........+. ++..+++++.||.|++||+++++++..+.+|...|.+++|+ ++.|++++.|++|
T Consensus 185 ~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v 264 (354)
T 2pbi_B 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264 (354)
T ss_dssp TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeE
Confidence 999988887776555444433 35799999999999999999999999999999999999994 7899999999999
Q ss_pred EEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcch
Q psy18018 246 KGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLW 325 (635)
Q Consensus 246 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (635)
++||+........ +
T Consensus 265 ~lwd~~~~~~~~~----------------------------------------~-------------------------- 278 (354)
T 2pbi_B 265 RLYDLRADREVAI----------------------------------------Y-------------------------- 278 (354)
T ss_dssp EEEETTTTEEEEE----------------------------------------E--------------------------
T ss_pred EEEECCCCcEEEE----------------------------------------E--------------------------
Confidence 9999875321100 0
Q ss_pred hhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCC
Q psy18018 326 REKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADS 403 (635)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg 403 (635)
...........++|+|++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+ +.+|++++.|+
T Consensus 279 ----------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 279 ----------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ----------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ----------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 000011223457799999999999999999999999999999999999999999997 45777777777
Q ss_pred cEEEEE
Q psy18018 404 TVKVWD 409 (635)
Q Consensus 404 ~i~iwd 409 (635)
.|++|+
T Consensus 349 ~v~vW~ 354 (354)
T 2pbi_B 349 TLRVWA 354 (354)
T ss_dssp EEEEEC
T ss_pred CEEecC
Confidence 777774
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-38 Score=307.34 Aligned_cols=298 Identities=24% Similarity=0.432 Sum_probs=225.3
Q ss_pred eeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018 62 EINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV 139 (635)
Q Consensus 62 ~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~ 139 (635)
...|+.....+.++|.+|.+.| ++++|+ +++|+||+.|++|++||+.+ ++....+.
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V-~~~~~sp~~~~l~s~s~D~~v~iWd~~~---------------------~~~~~~~~ 105 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKV-YSLDWTPEKNWIVSASQDGRLIVWNALT---------------------SQKTHAIK 105 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCE-EEEEECTTSSCEEEEETTSEEEEEETTT---------------------TEEEEEEE
T ss_pred ccccccceeEEeecccccccEE-EEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------CccceEEe
Confidence 3458888888889999999998 999999 89999999999999998764 45677888
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc-------ceeeccccceeEEeeeccC--CCEEEEEeCCCcEEEE
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE-------CLHAELQETEVELSHGYAL--RSRIVSGSDDNTLKVW 208 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vw 208 (635)
+|...|.+++| ++++|++++.|+.+++||+.+.. ....+..+......+.+.+ +.+|++++.|++|++|
T Consensus 106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 99999999999 89999999999999999987543 2223344444333333333 4579999999999999
Q ss_pred ECCCCeEEEEE-----eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccc
Q psy18018 209 SATTGKCLRTL-----IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRD 283 (635)
Q Consensus 209 d~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (635)
|+.+++.+..+ .+|...|.++.+
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~---------------------------------------------------- 213 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSI---------------------------------------------------- 213 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEE----------------------------------------------------
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEe----------------------------------------------------
Confidence 99999888776 456666666553
Q ss_pred eeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCC
Q psy18018 284 FISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLD 362 (635)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d 362 (635)
++ ++.++++|+.|
T Consensus 214 ------------------------------------------------------------------~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 214 ------------------------------------------------------------------NSLNANMFISGSCD 227 (380)
T ss_dssp ------------------------------------------------------------------CSSSCCEEEEEETT
T ss_pred ------------------------------------------------------------------ecCCCCEEEEEECC
Confidence 22 45566777777
Q ss_pred CeEEEEEcc-CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEE
Q psy18018 363 TSIRVWEAE-SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVW 441 (635)
Q Consensus 363 g~i~v~~~~-~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~ 441 (635)
+.|++||+. .++.+..+.+|...|.+++|+ |++++|++++.|++|++|
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-------------------------------p~~~~l~s~s~D~~i~lw 276 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFF-------------------------------PDGQRFGTGSDDGTCRLF 276 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEEC-------------------------------TTSSEEEEECSSSCEEEE
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEe-------------------------------cCCCeEEEEcCCCeEEEE
Confidence 777777765 345667788999999999986 334444455555555555
Q ss_pred eCCCCceeeeeccC-------CccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecC-CCcccccEEEEEe--cC
Q psy18018 442 EAESGNLRHTLMGH-------QSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSG-RNKHQSAVTCLQF--NS 509 (635)
Q Consensus 442 d~~~~~~~~~~~~~-------~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~--~~ 509 (635)
|+++++.+..+..+ ...+.+++| +++++++|+.||.|++||+..++.+..+.. ...|...|.+++| ++
T Consensus 277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 55555544444332 223666666 678999999999999999999988877732 2348899999999 68
Q ss_pred CEEEEEeCCCcEEEEECCCCc
Q psy18018 510 RFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 510 ~~l~~~~~d~~i~vwd~~~~~ 530 (635)
++|++|+.|++|++|++...+
T Consensus 357 ~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999998654
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-37 Score=302.46 Aligned_cols=291 Identities=24% Similarity=0.423 Sum_probs=229.8
Q ss_pred cccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcc-----------------eE
Q psy18018 22 KGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDH-----------------VI 84 (635)
Q Consensus 22 ~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~-----------------vi 84 (635)
.+|.+.| +|++|| |||++||+++. ..+.+|+..+++.+..+.+|... .|
T Consensus 61 ~~h~~~V-~~v~fs----pdg~~la~g~~---------~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v 126 (393)
T 1erj_A 61 LDHTSVV-CCVKFS----NDGEYLATGCN---------KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 126 (393)
T ss_dssp EECSSCC-CEEEEC----TTSSEEEEECB---------SCEEEEETTTCCEEEEECC-----------------CCCCBE
T ss_pred cCCCCEE-EEEEEC----CCCCEEEEEcC---------CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeE
Confidence 3799999 999999 99999999863 23456999999988888776532 14
Q ss_pred EEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeC
Q psy18018 85 TCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY 160 (635)
Q Consensus 85 ~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~ 160 (635)
++++|+ +++||+|+.|++|++||+.+ ++.+..+.+|...|.+++| ++++|++++.
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCCEEEEecC
Confidence 899999 89999999999888888764 4566788899999999999 8999999999
Q ss_pred CCeEEEEeCCCccceeeccccceeEEeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEE-------eCCCCCeEEEEee
Q psy18018 161 DYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTL-------IGHTGGVWSSQMA 232 (635)
Q Consensus 161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~ 232 (635)
|++|++||+.+++....+.....+......+ ++.++++++.|+.|++||+.+++.+..+ .+|...|.+++|+
T Consensus 186 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC
Confidence 9999999999998877776666666666666 6789999999999999999999888776 5788999999984
Q ss_pred --CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018 233 --GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ 310 (635)
Q Consensus 233 --~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (635)
+++|++++.||.|++||+.......
T Consensus 266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~----------------------------------------------------- 292 (393)
T 1erj_A 266 RDGQSVVSGSLDRSVKLWNLQNANNKS----------------------------------------------------- 292 (393)
T ss_dssp TTSSEEEEEETTSEEEEEEC------------------------------------------------------------
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCCcc-----------------------------------------------------
Confidence 7788999999999999875421100
Q ss_pred cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018 311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 390 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~ 390 (635)
. .-....+.+...+.+|...|.+++
T Consensus 293 ----------------------------------------~---------------~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 293 ----------------------------------------D---------------SKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp ---------------------------------------------------------------CEEEEEECCSSCEEEEE
T ss_pred ----------------------------------------c---------------ccCCCCCcceEEEecccCcEEEEE
Confidence 0 000012334456677888888777
Q ss_pred EeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec-----
Q psy18018 391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR----- 465 (635)
Q Consensus 391 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----- 465 (635)
++ +++.+|++++.|+.|++||..+++.+..+.+|...|.++++.
T Consensus 318 ~~-------------------------------~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 318 TT-------------------------------QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp EC-------------------------------GGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred EC-------------------------------CCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 65 566678888888888889988899999999999999999874
Q ss_pred ---CCEEEEEeCCCcEEEEECCCC
Q psy18018 466 ---NNILVSGNADSTVKVWDIVSG 486 (635)
Q Consensus 466 ---~~~l~s~~~dg~i~iwd~~~~ 486 (635)
+++|++|+.||+|++|++...
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEECCCCcEEECccccc
Confidence 468999999999999997643
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.4e-37 Score=292.59 Aligned_cols=230 Identities=18% Similarity=0.303 Sum_probs=172.9
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
|+|++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+ ++.|++++.|+.|++||
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd----------------- 146 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN----------------- 146 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE-----------------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe-----------------
Confidence 66677788888888889999988888888999999999999986 33555555555555554
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeee---eccCCccEEEEEecC------------CEEEEEeCCCcEEEEECCCCceeEE
Q psy18018 427 VHVVSGSLDTSIRVWEAESGNLRHT---LMGHQSLTSGMELRN------------NILVSGNADSTVKVWDIVSGQCLQT 491 (635)
Q Consensus 427 ~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~~------------~~l~s~~~dg~i~iwd~~~~~~~~~ 491 (635)
+... .... ..+|...+.++.+++ .++++++.|+.|++||. ..+....
T Consensus 147 ----------------~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~ 208 (343)
T 2xzm_R 147 ----------------ILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT 208 (343)
T ss_dssp ----------------SSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred ----------------ccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence 4321 1111 236778888888753 58999999999999994 4666667
Q ss_pred ecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 492 LSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 492 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
+.. |...|.+++| ++++|++++.|+.|++||+........ ...+...|.+++|+|++++++++
T Consensus 209 ~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~-----------~~~~~~~v~~v~~sp~~~~la~~- 273 (343)
T 2xzm_R 209 FKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-----------EFDAGSTINQIAFNPKLQWVAVG- 273 (343)
T ss_dssp EEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE-----------EEECSSCEEEEEECSSSCEEEEE-
T ss_pred EcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce-----------eecCCCcEEEEEECCCCCEEEEE-
Confidence 776 8899999999 689999999999999999954331111 11245679999999999988765
Q ss_pred CCCeEEEEeCCCCceEE--eeeec------cCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 570 DDGTVKLWDVKTGEFIR--NLVSL------DSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~~~--~~~~~------~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
.|+.|++||+.+++... .+... ...+|...|.+++|+|+|++|++|+.||. +++|.++-
T Consensus 274 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~--v~~w~~~~ 340 (343)
T 2xzm_R 274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV--IRTFSFET 340 (343)
T ss_dssp ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE--EEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce--EEEEEEEc
Confidence 57789999998876543 33210 01257788999999999999999999998 56665543
No 40
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.9e-36 Score=283.76 Aligned_cols=230 Identities=28% Similarity=0.546 Sum_probs=192.2
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ |++++
T Consensus 73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-------------------------------~~~~~ 121 (312)
T 4ery_A 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-------------------------------PQSNL 121 (312)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-------------------------------SSSSE
T ss_pred EcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-------------------------------CCCCE
Confidence 66777888888888888889888888888899999988888875 55667
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEE
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ 506 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 506 (635)
+++++.|+.|++||+++++.+..+..|...+.++.++ ++++++++.|+.|++||+.+++.+..+.. .+...+.+++
T Consensus 122 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~ 199 (312)
T 4ery_A 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVK 199 (312)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEE
Confidence 7888888888888888888888999999999999884 66999999999999999999988877643 2566788888
Q ss_pred e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceec--ccc-cCCCeEEEEecCCCeEEEEeCCC
Q psy18018 507 F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC--PHL-QFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 507 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
| ++++|++++.|+.|++||+++++....+..+ .....+ ..+ .+++++|++|+.||.|++||+.+
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-----------KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS-----------CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec-----------CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 8 6899999999999999999999877766543 222222 223 36789999999999999999999
Q ss_pred CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc--CCCeeEeEEEEEe
Q psy18018 582 GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS--RNGTEETKLLVLD 629 (635)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~--~dg~~~~~l~~~d 629 (635)
++.+..+ .+|.+.|.+++|+|++.+|++++ .|+. +++|..|
T Consensus 269 ~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~--i~~W~~d 311 (312)
T 4ery_A 269 KEIVQKL-----QGHTDVVISTACHPTENIIASAALENDKT--IKLWKSD 311 (312)
T ss_dssp CCEEEEE-----CCCSSCEEEEEECSSSSEEEEEECTTTCC--EEEEECC
T ss_pred chhhhhh-----hccCCcEEEEeecCcCCceEEEEccCCcc--EEEecCC
Confidence 9999888 58899999999999999999987 5787 6777654
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.1e-36 Score=288.57 Aligned_cols=318 Identities=18% Similarity=0.286 Sum_probs=247.1
Q ss_pred cccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCC
Q psy18018 24 HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDN 101 (635)
Q Consensus 24 h~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~ 101 (635)
|.++| .+++|| |||+++|.+.....+ ..|+...........+|.+.+ ++++|+ +++|++++ ||
T Consensus 8 ~~~~v-~~~~~s----~dg~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~-dg 72 (337)
T 1gxr_A 8 GSKPA-YSFHVT----ADGQMQPVPFPPDAL--------IGPGIPRHARQINTLNHGEVV-CAVTISNPTRHVYTGG-KG 72 (337)
T ss_dssp EEEEC-CEEEEC----SSSCEEECCCCTTSS--------SSTTCCSEEEEEEEECCSSCC-CEEEECSSSSEEEEEC-BS
T ss_pred cCCce-eEEEEC----CCCCEEEeecCCCcE--------eccccCCccccceeccCCCce-EEEEEecCCcEEEEcC-CC
Confidence 45567 899999 999999988754332 236555444444555898888 999999 88999998 99
Q ss_pred cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee--CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee
Q psy18018 102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV--GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA 177 (635)
Q Consensus 102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~--~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~ 177 (635)
.|++||+.+++. ......+. +|...|.+++| ++++|++++.||.|++||+.+++.
T Consensus 73 ~i~iw~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--- 131 (337)
T 1gxr_A 73 CVKVWDISHPGN------------------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--- 131 (337)
T ss_dssp EEEEEETTSTTC------------------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----
T ss_pred eEEEEECCCCCc------------------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---
Confidence 999999986541 12233333 79999999999 788888888888888888654321
Q ss_pred ccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeec
Q psy18018 178 ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAI 257 (635)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~ 257 (635)
.....+..|...|.+++
T Consensus 132 ------------------------------------~~~~~~~~~~~~i~~~~--------------------------- 148 (337)
T 1gxr_A 132 ------------------------------------RIKAELTSSAPACYALA--------------------------- 148 (337)
T ss_dssp ------------------------------------EEEEEEECSSSCEEEEE---------------------------
T ss_pred ------------------------------------ceeeecccCCCceEEEE---------------------------
Confidence 12344556666666655
Q ss_pred cccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcc
Q psy18018 258 GQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHR 337 (635)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (635)
T Consensus 149 -------------------------------------------------------------------------------- 148 (337)
T 1gxr_A 149 -------------------------------------------------------------------------------- 148 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCccee
Q psy18018 338 NKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417 (635)
Q Consensus 338 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 417 (635)
++|+++++++++.+|.|++||+.+++.+..+..|...+.+++++
T Consensus 149 -----------~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~------------------------- 192 (337)
T 1gxr_A 149 -----------ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------------------------- 192 (337)
T ss_dssp -----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-------------------------
T ss_pred -----------ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC-------------------------
Confidence 66677788888888889999988888888888899999988886
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR 495 (635)
Q Consensus 418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 495 (635)
|+++++++++.|+.|++||+++++....+. +...+.++.+ +++++++++.|+.|++||+.+++.. .+..
T Consensus 193 ------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~- 263 (337)
T 1gxr_A 193 ------NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL- 263 (337)
T ss_dssp ------TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC-
T ss_pred ------CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC-
Confidence 445566666667777777777766666554 6677888887 4679999999999999999988754 4444
Q ss_pred CcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCe
Q psy18018 496 NKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGT 573 (635)
Q Consensus 496 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 573 (635)
|...|.+++| ++++|++++.||.|++||+++++..... .|...+.+++|+|++++|++++.||.
T Consensus 264 --~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 264 --HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred --CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------------cCCCcEEEEEECCCCCEEEEecCCCe
Confidence 8889999999 5899999999999999999998765322 36788999999999999999999999
Q ss_pred EEEEeC
Q psy18018 574 VKLWDV 579 (635)
Q Consensus 574 v~iwd~ 579 (635)
|++||+
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.3e-36 Score=282.81 Aligned_cols=288 Identities=29% Similarity=0.574 Sum_probs=227.3
Q ss_pred CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018 70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC 147 (635)
Q Consensus 70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~ 147 (635)
.....++.+|.+.| ++++|+ +++||+++.|+.|++|++.+ ++....+.+|...|.+
T Consensus 13 ~~~~~~~~gh~~~v-~~~~~s~~~~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~~ 70 (312)
T 4ery_A 13 YALKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGISD 70 (312)
T ss_dssp CEEEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEE
T ss_pred ceeEEEEcccCCcE-EEEEECCCCCEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceEE
Confidence 34556788999988 999999 89999999999999988764 4556678899999999
Q ss_pred EEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC
Q psy18018 148 VQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG 225 (635)
Q Consensus 148 l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~ 225 (635)
++| ++++|++++.|+.|++||+.+ ++++..+.+|...
T Consensus 71 ~~~~~~~~~l~s~~~d~~i~vwd~~~-----------------------------------------~~~~~~~~~~~~~ 109 (312)
T 4ery_A 71 VAWSSDSNLLVSASDDKTLKIWDVSS-----------------------------------------GKCLKTLKGHSNY 109 (312)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-----------------------------------------CCEEEEEECCSSC
T ss_pred EEEcCCCCEEEEECCCCEEEEEECCC-----------------------------------------CcEEEEEcCCCCC
Confidence 999 778888888777777776543 4445566678777
Q ss_pred eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018 226 VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL 305 (635)
Q Consensus 226 v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (635)
|.++.
T Consensus 110 v~~~~--------------------------------------------------------------------------- 114 (312)
T 4ery_A 110 VFCCN--------------------------------------------------------------------------- 114 (312)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEEE---------------------------------------------------------------------------
Confidence 76655
Q ss_pred HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc
Q psy18018 306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL 385 (635)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~ 385 (635)
|+|+++++++|+.|+.|++||+.+++.+..+..|...
T Consensus 115 -------------------------------------------~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 115 -------------------------------------------FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp -------------------------------------------ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred -------------------------------------------EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 6667778888888889999998888888888899999
Q ss_pred eeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-cCCccEEEEEe
Q psy18018 386 TSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMEL 464 (635)
Q Consensus 386 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~ 464 (635)
|.+++++ ++++++++++.|+.|++||+.+++.+..+. .+...+..+.+
T Consensus 152 v~~~~~~-------------------------------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 200 (312)
T 4ery_A 152 VSAVHFN-------------------------------RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200 (312)
T ss_dssp EEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEE
T ss_pred EEEEEEc-------------------------------CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEE
Confidence 9888876 445566666667777777777766665554 35567777777
Q ss_pred --cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE-EEe-cCCEEEEEeCCCcEEEEECCCCceeeeecccee
Q psy18018 465 --RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI 540 (635)
Q Consensus 465 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 540 (635)
+++++++++.|+.|++||+.+++.+..+..+......+.. ... ++.+|++++.||.|++||+++++.+..+..
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--- 277 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--- 277 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC---
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc---
Confidence 4679999999999999999999998888773322222222 222 588999999999999999999988777654
Q ss_pred cCceeEEeccCceecccccCCCeEEEEec--CCCeEEEEeCC
Q psy18018 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSS--DDGTVKLWDVK 580 (635)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~v~iwd~~ 580 (635)
|...|.+++|+|++++|++++ .|++|++|+..
T Consensus 278 --------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 278 --------HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred --------cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 688999999999999999986 69999999864
No 43
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-36 Score=291.19 Aligned_cols=309 Identities=18% Similarity=0.299 Sum_probs=219.5
Q ss_pred CCCceeeccCcceEEEEEE-----c---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCC
Q psy18018 71 KDPKVLKGHDDHVITCLQF-----S---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL 142 (635)
Q Consensus 71 ~~~~~l~~h~~~vi~~~~~-----s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~ 142 (635)
++...|++|.+.| ++++| + +++||||+.|++|++||+.+++.. ...+++...+.+|.
T Consensus 12 ~~~~~l~gH~~~V-~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------~~~~~~~~~l~~h~ 76 (343)
T 2xzm_R 12 VKRGILEGHSDWV-TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------GYFGIPHKALTGHN 76 (343)
T ss_dssp EEEEEEECCSSCE-EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------SBSEEEEEEECCCS
T ss_pred eeeeeeccchhhh-hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------cccccccchhccCC
Confidence 4456799999998 99999 3 789999999999999998754310 01245677889999
Q ss_pred cceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy18018 143 AAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI 220 (635)
Q Consensus 143 ~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 220 (635)
..|.+++| ++.++++++.|++|++||+. +++.+..+.
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~-----------------------------------------~~~~~~~~~ 115 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLR-----------------------------------------TGTTYKRFV 115 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETT-----------------------------------------SSCEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECC-----------------------------------------CCcEEEEEc
Confidence 99999999 77788888877777777654 344556677
Q ss_pred CCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEe
Q psy18018 221 GHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLT 298 (635)
Q Consensus 221 ~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (635)
+|...|.+++|+ +++|++++.|++|++||
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd------------------------------------------------- 146 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWN------------------------------------------------- 146 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEE-------------------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe-------------------------------------------------
Confidence 899999988853 44555555555555555
Q ss_pred ecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe
Q psy18018 299 FLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~ 378 (635)
+.. .....
T Consensus 147 -----------------------------------------------------------------------~~~-~~~~~ 154 (343)
T 2xzm_R 147 -----------------------------------------------------------------------ILG-ECKFS 154 (343)
T ss_dssp -----------------------------------------------------------------------SSS-CEEEE
T ss_pred -----------------------------------------------------------------------ccC-Cceee
Confidence 331 11111
Q ss_pred e---eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC
Q psy18018 379 L---MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH 455 (635)
Q Consensus 379 ~---~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 455 (635)
. ..|...+.+++|++..- . . ....|.+.++++++.|+.|++|| .+.+....+.+|
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~-----~----------~------~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h 212 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMK-----S----------A------NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAH 212 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCC-----S----------C------SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECC
T ss_pred eecccCCCceeeeeeeccccc-----c----------c------cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCc
Confidence 1 25677788888764210 0 0 00134567889999999999999 456777788999
Q ss_pred CccEEEEEec--CCEEEEEeCCCcEEEEECCC-CceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018 456 QSLTSGMELR--NNILVSGNADSTVKVWDIVS-GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 456 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~ 530 (635)
...|.+++++ +++|++++.|+.|++||+.. ......+. +...|.+++| ++.+++ ++.|+.|++|++.+++
T Consensus 213 ~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQS 287 (343)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCC
T ss_pred cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCC
Confidence 9999999984 66999999999999999943 44444443 4456999999 466665 4567889999998876
Q ss_pred eee--eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCc
Q psy18018 531 FST--PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583 (635)
Q Consensus 531 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~ 583 (635)
... .+.............|...|++++|+|++++|++|+.||.|++||+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 543 22211000000112467789999999999999999999999999987654
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-37 Score=289.42 Aligned_cols=300 Identities=20% Similarity=0.329 Sum_probs=214.7
Q ss_pred CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018 211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR 290 (635)
Q Consensus 211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (635)
.+.+++.++.+|.++|+++.|++++|++++.|++|++|++.........
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~------------------------------- 50 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID------------------------------- 50 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE-------------------------------
T ss_pred cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE-------------------------------
Confidence 4567788999999999999999889999999999999998653110000
Q ss_pred ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018 291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA 370 (635)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~ 370 (635)
.+....+......++|+|++++|++|+.|+.|++|+.
T Consensus 51 -------------------------------------------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 51 -------------------------------------------VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp -------------------------------------------EECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred -------------------------------------------EEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 0000112234556789999999999999999999998
Q ss_pred cC-------CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC
Q psy18018 371 ES-------GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA 443 (635)
Q Consensus 371 ~~-------~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~ 443 (635)
.. .+.+..+.+|...|.+++|+ |++++|++++.|++|++||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------------------------------p~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWS-------------------------------NDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEEC-------------------------------TTSCEEEEEETTSCEEEEEC
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEEC-------------------------------CCCCEEEEEeCCCEEEEEec
Confidence 53 34567788999999999886 34445555555555555555
Q ss_pred CC----CceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC--ceeEEecCCCcccccEEEEEec----CCE
Q psy18018 444 ES----GNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQFN----SRF 511 (635)
Q Consensus 444 ~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~----~~~ 511 (635)
.. .+.+..+.+|...|.++.|+ +++|++++.|++|++||..++ +++..+.+ |...|.+++|+ +.+
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCSSSSCE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecCCCCeeE
Confidence 22 24567788999999999985 569999999999999998766 56777776 89999999994 458
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce--EEeee
Q psy18018 512 VITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF--IRNLV 589 (635)
Q Consensus 512 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~ 589 (635)
|++++.|++|++||+..+........ .........|...|.+++|++++ +|++++.||+|+|||..+++. +....
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~ 290 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEW--VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA 290 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEE--EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES
T ss_pred EEEEeCCCeEEEEEecCCCcccccee--EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc
Confidence 99999999999999876421100000 00000001278899999999765 889999999999999988743 22221
Q ss_pred eccCCCCCc-eEEEEEeCC--CCeEEEEccCCCeeEeEEEE
Q psy18018 590 SLDSGGSGG-VVWRIRASE--TKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 590 ~~~~~~~~~-~i~~l~~s~--d~~~l~~~~~dg~~~~~l~~ 627 (635)
.+|.. .|.+++|+| ++++|++|+.||+ ++||.
T Consensus 291 ----~~h~~~~v~~v~~~~~~~~~~las~s~Dg~--v~~W~ 325 (330)
T 2hes_X 291 ----LCHGVYEINVVKWLELNGKTILATGGDDGI--VNFWS 325 (330)
T ss_dssp ----CTTTTSCEEEEEEC-----CCEEEEETTSE--EEEEE
T ss_pred ----cccccceEEEEEEecCCCceEEEEecCCCc--EEEEE
Confidence 35666 899999999 7999999999998 44543
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-38 Score=310.52 Aligned_cols=366 Identities=15% Similarity=0.192 Sum_probs=259.7
Q ss_pred cccceEEEEEecCCCCCCCc-eeecCCcch--heeeccceeeeeeecCCCC---CCceeeccCcceEEEEEEc--CCEEE
Q psy18018 24 HDDHVITCLQFSGKSFPCES-FIRSSSPWK--ALFMSHRSVEINWRTRPIK---DPKVLKGHDDHVITCLQFS--GSRIV 95 (635)
Q Consensus 24 h~~~vi~~~~~s~~~~~~~~-~la~~~~~~--~~~~~~~~~~~iwd~~~~~---~~~~l~~h~~~vi~~~~~s--~~~l~ 95 (635)
+...| ++++|| |+|+ ++|++...+ .+..+.+..+.+||..+++ .+..+ .|...+ ++++|+ +++|+
T Consensus 11 ~~~~v-~~~~~s----p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 11 EFSRT-ATFAWS----HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKF-NDLDWSHNNKIIA 83 (416)
T ss_dssp EEEES-CBCCBC----SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCE-EEEEECSSSSCEE
T ss_pred hhhhc-ceEeeC----CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCce-EEEEECCCCCeEE
Confidence 34566 899999 8887 999984322 1112345667789999876 33333 577777 999999 89999
Q ss_pred EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCc
Q psy18018 96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTE 172 (635)
Q Consensus 96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~ 172 (635)
+++.|+.|++||+.+.. ...+.+..+.+|...|++++| + +++|++++.||+|++||+.++
T Consensus 84 ~~~~dg~v~vw~~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 84 GALDNGSLELYSTNEAN-----------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp EEESSSCEEEECCSSTT-----------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred EEccCCeEEEeeccccc-----------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999987521 113467888899999999999 5 889999999999999999988
Q ss_pred c------ceeec---cccc-eeEEeeeccC-CCEEEEEeCCCcEEEEECCCCeEEEEEeCC------CCCeEEEEeeCCE
Q psy18018 173 E------CLHAE---LQET-EVELSHGYAL-RSRIVSGSDDNTLKVWSATTGKCLRTLIGH------TGGVWSSQMAGNI 235 (635)
Q Consensus 173 ~------~~~~~---~~~~-~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~ 235 (635)
+ ..... ..+. .+......+. +..+++++.|+.|++||+.+++.+..+..| ...|.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~----- 221 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE----- 221 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE-----
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE-----
Confidence 6 33222 2333 3333444444 578999999999999999999888887765 34444444
Q ss_pred EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccce
Q psy18018 236 IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW 315 (635)
Q Consensus 236 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (635)
T Consensus 222 -------------------------------------------------------------------------------- 221 (416)
T 2pm9_A 222 -------------------------------------------------------------------------------- 221 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC-cEEEEecCCC---eEEEEEccCC-ceEEeee-CCCcceeEE
Q psy18018 316 RFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG-VHVVSGSLDT---SIRVWEAESG-NLRHTLM-GHQSLTSGM 389 (635)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg---~i~v~~~~~~-~~~~~~~-~~~~~v~~l 389 (635)
|+|++ .++++++.++ .|++||+.++ ..+..+. +|...|.++
T Consensus 222 ---------------------------------~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 222 ---------------------------------WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp ---------------------------------ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred ---------------------------------ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence 66665 5677777777 8888888875 5566677 888899988
Q ss_pred EEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee-CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C
Q psy18018 390 ELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N 466 (635)
Q Consensus 390 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~ 466 (635)
+|+ | ++++|++++.|+.|++||+.+++.+..+.+|...|.+++++ +
T Consensus 269 ~~s-------------------------------~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 269 DWC-------------------------------HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA 317 (416)
T ss_dssp EEC-------------------------------SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred EeC-------------------------------CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence 886 3 56678888888888899988899999999999999999985 3
Q ss_pred -CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCce
Q psy18018 467 -NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPF 544 (635)
Q Consensus 467 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 544 (635)
.++++++.|+.|++||+.+.+...................+ .+..++.++..+.+.+ .. .
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~--------- 379 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL---QA------P--------- 379 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC---CC------C---------
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc---cC------C---------
Confidence 69999999999999999876643332210000000111111 2333333332221111 00 0
Q ss_pred eEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018 545 YFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 545 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~ 582 (635)
..|..++.+++|+|||++|++++.|+.|+||++.+.
T Consensus 380 --~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 380 --TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred --ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 015667889999999999999999999999999864
No 46
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=288.33 Aligned_cols=304 Identities=21% Similarity=0.303 Sum_probs=216.7
Q ss_pred CeEEEEeeCCCc-ceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee---ccccc-eeEEeeeccCCCEEEEEeCCCc
Q psy18018 132 GECLHVLVGHLA-AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA---ELQET-EVELSHGYALRSRIVSGSDDNT 204 (635)
Q Consensus 132 ~~~~~~l~~h~~-~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~~~dg~ 204 (635)
.+++..+.+|.. .|.+++| ++++||+++.|++|++||+.+++.... ...+. .+....+.+++.+|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999988 9999999 899999999999999999988754322 23333 4445555567889999999999
Q ss_pred EEEEECCCC--eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018 205 LKVWSATTG--KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282 (635)
Q Consensus 205 i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (635)
+++||..++ +++..+.+|...|.+++|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~--------------------------------------------------- 113 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAW--------------------------------------------------- 113 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEE---------------------------------------------------
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEE---------------------------------------------------
Confidence 999998876 467788899999988885
Q ss_pred ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD 362 (635)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 362 (635)
+|++++|++|+.|
T Consensus 114 -------------------------------------------------------------------sp~~~~l~s~s~D 126 (345)
T 3fm0_A 114 -------------------------------------------------------------------APSGNLLATCSRD 126 (345)
T ss_dssp -------------------------------------------------------------------CTTSSEEEEEETT
T ss_pred -------------------------------------------------------------------eCCCCEEEEEECC
Confidence 4444445555555
Q ss_pred CeEEEEEccCC---ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018 363 TSIRVWEAESG---NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439 (635)
Q Consensus 363 g~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 439 (635)
+.|++||+.++ ..+..+.+|...|.+++|+ |++++|++++.|+.|+
T Consensus 127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~-------------------------------p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH-------------------------------PSQELLASASYDDTVK 175 (345)
T ss_dssp SCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC-------------------------------SSSSCEEEEETTSCEE
T ss_pred CeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC-------------------------------CCCCEEEEEeCCCcEE
Confidence 55555554433 2345567788888888876 3445555666666666
Q ss_pred EEeCCCCc--eeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC---------------ceeEEecCCCcccc
Q psy18018 440 VWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG---------------QCLQTLSGRNKHQS 500 (635)
Q Consensus 440 ~~d~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~~~ 500 (635)
+||..+++ ....+.+|...|.+++|+ +++|++++.|++|++||.... +++..+.+ .|..
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 253 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG--FHSR 253 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS--SCSS
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC--CCCC
Confidence 66665553 346788999999999985 669999999999999996321 22233332 2778
Q ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCeEEEE
Q psy18018 501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGTVKLW 577 (635)
Q Consensus 501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~v~iw 577 (635)
.|.+++| ++..|++++.|+.|++|+...+......... ........|...|++++|+|++ .+||+|+.||+|++|
T Consensus 254 ~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS--LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE--EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE--EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 8999999 5889999999999999998765421110000 0000012478899999999998 599999999999999
Q ss_pred eCCCCceEEee
Q psy18018 578 DVKTGEFIRNL 588 (635)
Q Consensus 578 d~~~~~~~~~~ 588 (635)
++.+++.+...
T Consensus 332 ~~~~~~~~~~~ 342 (345)
T 3fm0_A 332 KYQRPEGLHHH 342 (345)
T ss_dssp EECC-------
T ss_pred EecCCCCcccc
Confidence 99988876554
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-36 Score=299.88 Aligned_cols=343 Identities=17% Similarity=0.215 Sum_probs=237.4
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy18018 145 VRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGH 222 (635)
Q Consensus 145 v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h 222 (635)
+++++| ++++|++++.||.|++||+.+++....+..+.........+++.+|++++.||.|++||+.+++....+.+|
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 446777 899999999999999999999887776666655555555667889999999999999999999998888899
Q ss_pred CCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018 223 TGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300 (635)
Q Consensus 223 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (635)
...|.+++|+ +++|++++.|+.|++||+.+....
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------------------------- 174 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-------------------------------------------- 174 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--------------------------------------------
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--------------------------------------------
Confidence 9999998863 455666666666666655432110
Q ss_pred CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEec--CcEEEEecCCCeEEEEEccCCceEEe
Q psy18018 301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFD--GVHVVSGSLDTSIRVWEAESGNLRHT 378 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~v~~~~~~~~~~~ 378 (635)
.....|...+.++... +++|++++.||.|++||+.+++.+..
T Consensus 175 ------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 175 ------------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp ------------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ------------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 0001123333444444 33455555555555555555555555
Q ss_pred eeCCC---cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec-c
Q psy18018 379 LMGHQ---SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-G 454 (635)
Q Consensus 379 ~~~~~---~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~ 454 (635)
+..|. ..+.++++.+. .+..+ ... .........++|+++++++++.||.|++||+.+++....+. .
T Consensus 219 ~~~~~~~~~~v~~~~~~~~------~~~~~--~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVG------TDRQL--HEI--STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ECBTTBTTCCEEEEEEEEC------CCSSC--GGG--CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred eecCCCCCCCccEEEEecC------Cccee--eec--ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 55532 23333333200 00000 000 00000111256899999999999999999999988777765 4
Q ss_pred CCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCce-eEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCC
Q psy18018 455 HQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTG 529 (635)
Q Consensus 455 ~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~ 529 (635)
|...+.++++++ . ++++++.||.|++||+++++. +..+..+ +...+.++.+ ++++|++++.|+.|++|++...
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--EGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--TTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--CCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 788999999964 4 999999999999999998754 5555542 5677888877 6889999999999999999875
Q ss_pred ceeeeeccceecCceeEEeccCceecccccCCCe---EEEEecCCCeEEEEeCCC
Q psy18018 530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR---FVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~v~iwd~~~ 581 (635)
........ ...+.....|...|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 367 ~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 367 ESERPAIE--FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TCCSCEEC--TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCcccee--ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 43322211 122334556788999999999999 677777899999999864
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-36 Score=286.11 Aligned_cols=301 Identities=23% Similarity=0.346 Sum_probs=226.9
Q ss_pred CCCeEEEEeeCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccc-----eeeccccce-eEEeeeccCCCEEEEEe
Q psy18018 130 ESGECLHVLVGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEEC-----LHAELQETE-VELSHGYALRSRIVSGS 200 (635)
Q Consensus 130 ~~~~~~~~l~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~~~~ 200 (635)
++.++..+|+||.++|++|+| + +++|+||+.||+|++||+.+.+. ...+..+.. +....+.+++.+|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344566789999999999999 4 68999999999999999887543 334444444 44444456678899999
Q ss_pred CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018 201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF 280 (635)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (635)
.|+.|++|+............+...+....
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 135 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVA-------------------------------------------------- 135 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEE--------------------------------------------------
T ss_pred ccccceEEeecccceeeeecCCCCceeEEE--------------------------------------------------
Confidence 999999999888877777666665555444
Q ss_pred ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec
Q psy18018 281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS 360 (635)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 360 (635)
+++++.++++++
T Consensus 136 --------------------------------------------------------------------~~~~~~~l~s~s 147 (340)
T 4aow_A 136 --------------------------------------------------------------------FSSDNRQIVSGS 147 (340)
T ss_dssp --------------------------------------------------------------------ECTTSSCEEEEE
T ss_pred --------------------------------------------------------------------EeecCccceeec
Confidence 344555566666
Q ss_pred CCCeEEEEEccCCce-EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018 361 LDTSIRVWEAESGNL-RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439 (635)
Q Consensus 361 ~dg~i~v~~~~~~~~-~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 439 (635)
.|+.+++||...... .....+|...+..+++... +....+++++.|+.|+
T Consensus 148 ~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------~~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN-----------------------------SSNPIIVSCGWDKLVK 198 (340)
T ss_dssp TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC-----------------------------SSSCEEEEEETTSCEE
T ss_pred CCCeEEEEEeCCCceEEEEeccccCcccceEEccC-----------------------------CCCcEEEEEcCCCEEE
Confidence 666666666654332 2344567777777776521 2334567777888888
Q ss_pred EEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe-cCCEEEEEe
Q psy18018 440 VWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF-NSRFVITSS 516 (635)
Q Consensus 440 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~ 516 (635)
+||+.+++....+.+|...|.+++++ +++|++++.|+.|++||+.+.+.+..+. +...+.++++ .+..+++++
T Consensus 199 i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWLCAA 274 (340)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCCceeecc
Confidence 88888899999999999999999885 6799999999999999999999988887 4467888988 356677788
Q ss_pred CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCc
Q psy18018 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGE 583 (635)
Q Consensus 517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~ 583 (635)
.|+.|++||++++.....+.... .......|...|++++|+||+++|++|+.||.|+|||+++|+
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELKQEV--ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeEEEeccccc--eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999888776665431 122334578899999999999999999999999999999986
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-38 Score=308.46 Aligned_cols=329 Identities=13% Similarity=0.168 Sum_probs=246.2
Q ss_pred cceEEEEe--cCC-EEEEE----------eCCCeEEEEeCCCcc---ceeeccccceeEEeeeccCCCEEEEEeCCCcEE
Q psy18018 143 AAVRCVQY--DGK-LVVSG----------AYDYMVKIWNPDTEE---CLHAELQETEVELSHGYALRSRIVSGSDDNTLK 206 (635)
Q Consensus 143 ~~v~~l~~--~~~-~l~s~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 206 (635)
..|.+++| +++ +|+++ +.|+.|++||+.+++ .+........+....+.+++.+|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 46888889 665 89999 899999999999886 344444445566666667788999999999999
Q ss_pred EEECCC----CeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccc
Q psy18018 207 VWSATT----GKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279 (635)
Q Consensus 207 vwd~~~----~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (635)
+||+.+ .+.+..+.+|...|.+++|+ +++|++++.||.|++||+.+.....
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------------------- 150 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP---------------------- 150 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT----------------------
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc----------------------
Confidence 999987 45888888999999998874 5677777777777777765421000
Q ss_pred cccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEe
Q psy18018 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSG 359 (635)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 359 (635)
T Consensus 151 -------------------------------------------------------------------------------- 150 (416)
T 2pm9_A 151 -------------------------------------------------------------------------------- 150 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEE
Q psy18018 360 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIR 439 (635)
Q Consensus 360 ~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 439 (635)
. .. ..........|...+.+++|+++ .+..+++++.|+.|+
T Consensus 151 --~-~~------~~~~~~~~~~~~~~v~~~~~~~~------------------------------~~~~l~~~~~dg~v~ 191 (416)
T 2pm9_A 151 --S-NY------TPLTPGQSMSSVDEVISLAWNQS------------------------------LAHVFASAGSSNFAS 191 (416)
T ss_dssp --T-TC------CCBCCCCSCCSSCCCCEEEECSS------------------------------CTTEEEEESSSSCEE
T ss_pred --c-cc------cccccccccCCCCCeeEEEeCCC------------------------------CCcEEEEEcCCCCEE
Confidence 0 00 00001123567888888888621 134455556666666
Q ss_pred EEeCCCCceeeeeccC------CccEEEEEecC---CEEEEEeCCC---cEEEEECCCC-ceeEEec-CCCcccccEEEE
Q psy18018 440 VWEAESGNLRHTLMGH------QSLTSGMELRN---NILVSGNADS---TVKVWDIVSG-QCLQTLS-GRNKHQSAVTCL 505 (635)
Q Consensus 440 ~~d~~~~~~~~~~~~~------~~~v~~~~~~~---~~l~s~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~ 505 (635)
+||+++++.+..+..+ ...+.++.+++ .++++++.|+ .|++||++++ ++...+. . |...|.++
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~ 268 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---HQKGILSL 268 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---CSSCEEEE
T ss_pred EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---ccCceeEE
Confidence 6666666666666655 78899999863 4899999999 9999999986 5556665 5 88899999
Q ss_pred Ee---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC-eEEEEecCCCeEEEEeCCC
Q psy18018 506 QF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS-RFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 506 ~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~v~iwd~~~ 581 (635)
+| ++++|++++.|+.|++||+++++.+..+.. |...|++++|+|++ ++|++++.|+.|++||+.+
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-----------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-----------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-----------CCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 99 578999999999999999999987766654 68899999999999 8999999999999999988
Q ss_pred CceEEeeee------------------------------ccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 582 GEFIRNLVS------------------------------LDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 582 ~~~~~~~~~------------------------------~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
++....... ..+..+..++.+++|+|||++|++++.||. ++||.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~--v~~w~~ 412 (416)
T 2pm9_A 338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG--VSITNP 412 (416)
T ss_dssp CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC--BCCBCC
T ss_pred CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe--EEEEEe
Confidence 764322110 001125678889999999999999999998 455443
No 50
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=289.12 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=166.3
Q ss_pred CCCCcccccccc-ceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCc---eeeccCcceEEEEEEc
Q psy18018 15 IKDPKVLKGHDD-HVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPK---VLKGHDDHVITCLQFS 90 (635)
Q Consensus 15 ~~~~~~l~gh~~-~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~---~l~~h~~~vi~~~~~s 90 (635)
+...+.|.||.+ .| .+++|| |+|++||+++.++.+ .+||..+++... ...+|.+.| .+++|+
T Consensus 5 ~~~~~~~~~h~~~~v-~~l~~s----p~g~~las~~~D~~i--------~iw~~~~~~~~~~~~~~~~h~~~v-~~~~~s 70 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRC-WFLAWN----PAGTLLASCGGDRRI--------RIWGTEGDSWICKSVLSEGHQRTV-RKVAWS 70 (345)
T ss_dssp EEEEEEECCSTTSCE-EEEEEC----TTSSCEEEEETTSCE--------EEEEEETTEEEEEEEECSSCSSCE-EEEEEC
T ss_pred EEEeeeecCCCCCcE-EEEEEC----CCCCEEEEEcCCCeE--------EEEEcCCCcceeeeeeccccCCcE-EEEEEC
Confidence 344578899998 77 899999 999999999875544 469998875432 236899988 999999
Q ss_pred --CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEE
Q psy18018 91 --GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKI 166 (635)
Q Consensus 91 --~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~i 166 (635)
+++||+|+.|++|++||+.++. .+++..+.+|..+|.+++| ++++|++++.|++|++
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~i 131 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDD-------------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC--------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCEEEEEECCCcEEEEEccCCC-------------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEE
Confidence 9999999999999999976442 2456788899999999999 8999999999999999
Q ss_pred EeCCCccc---eeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCCCeEEEEee--CCEEEE
Q psy18018 167 WNPDTEEC---LHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGK--CLRTLIGHTGGVWSSQMA--GNIIIS 238 (635)
Q Consensus 167 wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s 238 (635)
||+.++.. +..+..+.. +......+.+.+|++++.|+.|++||..+++ +..++.+|...|++++|+ +++|++
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 99987643 334444443 4445555667899999999999999998875 457889999999999995 789999
Q ss_pred eeCceeEEEecc
Q psy18018 239 GSTDRTLKGWSN 250 (635)
Q Consensus 239 ~~~dg~i~~w~~ 250 (635)
++.|++|++|+.
T Consensus 212 ~s~D~~v~iW~~ 223 (345)
T 3fm0_A 212 CSDDRTVRIWRQ 223 (345)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEecc
Confidence 999999999985
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-35 Score=285.07 Aligned_cols=278 Identities=24% Similarity=0.463 Sum_probs=211.5
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccc-------------------eeEEeeeccCCCEEEE
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET-------------------EVELSHGYALRSRIVS 198 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~ 198 (635)
+|.+.|.+++| ||++||+++ ++++++|++.+++.+..+..+. .+....+.+++.+|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 69999999999 899999976 7899999999988776554332 1334445566789999
Q ss_pred EeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecc
Q psy18018 199 GSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEP 278 (635)
Q Consensus 199 ~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (635)
++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~------------------------------------------------ 172 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLD------------------------------------------------ 172 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEE------------------------------------------------
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEE------------------------------------------------
Confidence 99999999999999999999999999888877
Q ss_pred ccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE
Q psy18018 279 QFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358 (635)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 358 (635)
|+|++.+|++
T Consensus 173 ----------------------------------------------------------------------~~p~~~~l~s 182 (393)
T 1erj_A 173 ----------------------------------------------------------------------YFPSGDKLVS 182 (393)
T ss_dssp ----------------------------------------------------------------------ECTTSSEEEE
T ss_pred ----------------------------------------------------------------------EcCCCCEEEE
Confidence 4455555666
Q ss_pred ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee-CCcEEEEEeCCCc
Q psy18018 359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGVHVVSGSLDTS 437 (635)
Q Consensus 359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~l~~~~~d~~ 437 (635)
++.|+.|++||+.+++....+. +...+.+++++ | +++++++++.|+.
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------------------------~~~~~~l~~~s~d~~ 230 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS-------------------------------PGDGKYIAAGSLDRA 230 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-------------------------------STTCCEEEEEETTSC
T ss_pred ecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE-------------------------------CCCCCEEEEEcCCCc
Confidence 6666666666666655554443 23345555553 3 4556666666666
Q ss_pred EEEEeCCCCceeeee-------ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCc------------eeEEecCCC
Q psy18018 438 IRVWEAESGNLRHTL-------MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQ------------CLQTLSGRN 496 (635)
Q Consensus 438 i~~~d~~~~~~~~~~-------~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~ 496 (635)
|++||+.+++.+..+ .+|...|.+++++ +++|++++.|+.|++||+.+.. +...+.+
T Consensus 231 v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-- 308 (393)
T 1erj_A 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-- 308 (393)
T ss_dssp EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC--
T ss_pred EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec--
Confidence 666666666655554 5789999999984 6799999999999999997632 3344555
Q ss_pred cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC------CCeEEEEe
Q psy18018 497 KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF------NSRFVITS 568 (635)
Q Consensus 497 ~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~ 568 (635)
|...|.++++ ++++|++++.|+.|++||+++++.+..+.. |...|.+++|+| ++++|++|
T Consensus 309 -h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----------h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 309 -HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----------HRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp -CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred -ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----------CCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 8888999999 689999999999999999999987766554 678888888765 78999999
Q ss_pred cCCCeEEEEeCCCC
Q psy18018 569 SDDGTVKLWDVKTG 582 (635)
Q Consensus 569 ~~d~~v~iwd~~~~ 582 (635)
+.||+|+||+++..
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998643
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-35 Score=285.02 Aligned_cols=314 Identities=16% Similarity=0.237 Sum_probs=247.1
Q ss_pred CCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-
Q psy18018 141 HLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL- 216 (635)
Q Consensus 141 h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~- 216 (635)
|.++|.+++| ||+.++++..++.+..|+............+ ..+......+++.++++++ ||.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 5678899999 9999999988888777766655444333334 3444444455566777777 899999998765432
Q ss_pred --EEEe--CCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018 217 --RTLI--GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL 292 (635)
Q Consensus 217 --~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (635)
..+. +|...|.+++
T Consensus 87 ~~~~~~~~~~~~~v~~~~-------------------------------------------------------------- 104 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCK-------------------------------------------------------------- 104 (337)
T ss_dssp CSEEEECSCTTSBEEEEE--------------------------------------------------------------
T ss_pred eeecccccCCCCcEEEEE--------------------------------------------------------------
Confidence 2222 4555544444
Q ss_pred eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC
Q psy18018 293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES 372 (635)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 372 (635)
|+|+++++++++.+|.|++||+.+
T Consensus 105 --------------------------------------------------------~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 105 --------------------------------------------------------LLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp --------------------------------------------------------ECTTSSEEEEEESSSEEEEEECCC
T ss_pred --------------------------------------------------------EcCCCCEEEEEcCCCcEEEEECCC
Confidence 667777788888888888888877
Q ss_pred Cc--eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018 373 GN--LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH 450 (635)
Q Consensus 373 ~~--~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 450 (635)
++ ....+..|...+.+++++ |+++++++++.|+.|++||+++++...
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~dg~v~~~d~~~~~~~~ 177 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAIS-------------------------------PDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCcceeeecccCCCceEEEEEC-------------------------------CCCCEEEEEeCCCcEEEEeCCCCceee
Confidence 66 556677788888888775 456677778888888888888888888
Q ss_pred eeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018 451 TLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDV 526 (635)
Q Consensus 451 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~ 526 (635)
.+..|...+.++.+ +++++++++.|+.|++||+++++.+..+. +...+.++++ +++++++++.|+.|++||+
T Consensus 178 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 89999999999998 46699999999999999999999888775 6678999998 6899999999999999999
Q ss_pred CCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018 527 KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS 606 (635)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 606 (635)
++++... + ..|...|.+++|+|++++|++++.||.|++||+.+++.+... .+...+.+++|+
T Consensus 254 ~~~~~~~-~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------~~~~~v~~~~~s 315 (337)
T 1gxr_A 254 NKPDKYQ-L-----------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------KESSSVLSCDIS 315 (337)
T ss_dssp TSSCEEE-E-----------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------ECSSCEEEEEEC
T ss_pred CCCCeEE-E-----------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------cCCCcEEEEEEC
Confidence 9876432 1 236889999999999999999999999999999999988554 467889999999
Q ss_pred CCCeEEEEccCCCeeEeEEEEE
Q psy18018 607 ETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 607 ~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
|++++|++++.||. +++|.+
T Consensus 316 ~~~~~l~~~~~dg~--i~iw~~ 335 (337)
T 1gxr_A 316 VDDKYIVTGSGDKK--ATVYEV 335 (337)
T ss_dssp TTSCEEEEEETTSC--EEEEEE
T ss_pred CCCCEEEEecCCCe--EEEEEE
Confidence 99999999999998 444443
No 53
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-35 Score=281.43 Aligned_cols=299 Identities=23% Similarity=0.365 Sum_probs=232.7
Q ss_pred cCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCc
Q psy18018 67 TRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLA 143 (635)
Q Consensus 67 ~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~ 143 (635)
.++.++..+|+||.+.| ++++|+ +++|||||.|++|+|||+.+++. ..+.+...+.+|..
T Consensus 25 ~~~~~l~~tL~GH~~~V-~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWV-TQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------NYGIPQRALRGHSH 87 (340)
T ss_dssp -CEEEEEEEECCCSSCE-EEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------CSEEEEEEECCCSS
T ss_pred CCceEEEEEECCccCCE-EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------ccceeeEEEeCCCC
Confidence 34445567899999998 999998 68999999999999999876541 23456778899999
Q ss_pred ceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE-EEE
Q psy18018 144 AVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCL-RTL 219 (635)
Q Consensus 144 ~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~ 219 (635)
.|.+++| ++++|++++.|+.|++|+............... .......+.+..+++++.|+.+++||....... ...
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 9999999 899999999999999999998877666555443 344444556788999999999999998765443 334
Q ss_pred eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018 220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF 299 (635)
Q Consensus 220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (635)
.+|...+..+.+..
T Consensus 168 ~~~~~~v~~~~~~~------------------------------------------------------------------ 181 (340)
T 4aow_A 168 ESHSEWVSCVRFSP------------------------------------------------------------------ 181 (340)
T ss_dssp SSCSSCEEEEEECS------------------------------------------------------------------
T ss_pred ccccCcccceEEcc------------------------------------------------------------------
Confidence 56666666555310
Q ss_pred cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee
Q psy18018 300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 379 (635)
.+....+++++.|+.|++||+.+++.+..+
T Consensus 182 --------------------------------------------------~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~ 211 (340)
T 4aow_A 182 --------------------------------------------------NSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211 (340)
T ss_dssp --------------------------------------------------CSSSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred --------------------------------------------------CCCCcEEEEEcCCCEEEEEECCCCceeeEe
Confidence 112345778888899999999999999999
Q ss_pred eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE
Q psy18018 380 MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 459 (635)
Q Consensus 380 ~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 459 (635)
.+|...|.+++|+ |++++|++++.|+.|++||+.+.+.+..+..+ ..+
T Consensus 212 ~~h~~~v~~~~~s-------------------------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v 259 (340)
T 4aow_A 212 IGHTGYLNTVTVS-------------------------------PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DII 259 (340)
T ss_dssp CCCSSCEEEEEEC-------------------------------TTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCE
T ss_pred cCCCCcEEEEEEC-------------------------------CCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceE
Confidence 9999999998876 55667777777788888888887777777654 567
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC------CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018 460 SGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG------RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 460 ~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~ 530 (635)
.++.+.+ ..+++++.|+.|++||++++..+..+.. ...|...|++++| ++++|++|+.||.|++||+++|+
T Consensus 260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 260 NALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 7888753 4677888899999999998887776653 2247889999999 68999999999999999999875
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-36 Score=298.19 Aligned_cols=392 Identities=11% Similarity=0.116 Sum_probs=237.7
Q ss_pred CCCCCccccccccceEEEEEecCC------CCCCCceeecCCcchheeeccceeeeeeecCCCCCCcee-eccCcceEEE
Q psy18018 14 PIKDPKVLKGHDDHVITCLQFSGK------SFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVL-KGHDDHVITC 86 (635)
Q Consensus 14 ~~~~~~~l~gh~~~vi~~~~~s~~------~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l-~~h~~~vi~~ 86 (635)
|.+....+..|...+ ..+.+.|. -.|+++.++++. .|+ .+++++..+ .+|.+.| ++
T Consensus 6 ~~~~~~~~~~~~~~l-~~~~~~p~~~~~~~f~~~~~~~~~~~--------------~w~-~~g~~~~~~~~~h~~~V-~~ 68 (437)
T 3gre_A 6 HHHGEGDVESIEKFL-STFKILPPLRDYKEFGPIQEIVRSPN--------------MGN-LRGKLIATLMENEPNSI-TS 68 (437)
T ss_dssp --------CCCGGGT-TCC-CCCCGGGCGGGCCCCCCCCCCC--------------GGG-CCCCEEEEECTTTTSCE-EE
T ss_pred cccCCCChhHHHHHh-ccCCCCCChhchhhcCCccccccccc--------------ccc-ccceEEeeeccCCCCce-EE
Confidence 444445555555555 55555532 016666666665 288 567888888 8898888 99
Q ss_pred EEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC
Q psy18018 87 LQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD 161 (635)
Q Consensus 87 ~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d 161 (635)
++|+ +++||+|+.||+|++||+.+.+. + ...+....+ +|.++|++++| ++++|++++.|
T Consensus 69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~--------~-------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 69 SAVSPGETPYLITGSDQGVIKIWNLKEIIV--------G-------EVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEECSSSCEEEEEETTSEEEEEEHHHHHT--------T-------CCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCCCEEEEecCCceEEEeECccccc--------C-------cccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 9998 68999999999999999865110 0 011223333 59999999999 78999999999
Q ss_pred CeEEEEeCC---CccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe----eCC
Q psy18018 162 YMVKIWNPD---TEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM----AGN 234 (635)
Q Consensus 162 g~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~----~~~ 234 (635)
|+|++||+. +++.......+ .+ ....+.+ .++...+.++.+ ++.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~-~i-~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCE-CI-RKINLKN---------------------------FGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEE-EE-EEEEGGG---------------------------GSSCCCEEEEEEEECSSCE
T ss_pred CEEEEEEeccccCCceeeccccc-ee-EEEEccC---------------------------cccccCceEEEEEEcCCCC
Confidence 999999985 33333222111 00 0000000 002333344332 255
Q ss_pred EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccc
Q psy18018 235 IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRS 314 (635)
Q Consensus 235 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (635)
.+++++.||.|++||+.+......
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------------------------- 207 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQI-------------------------------------------------------- 207 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEE--------------------------------------------------------
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEE--------------------------------------------------------
Confidence 555555555555555543211000
Q ss_pred eeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeC
Q psy18018 315 WRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRN 393 (635)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~ 393 (635)
.....+......++|+|++.+|++|+.||.|++||+.+++.+..+. .|...|.++++.+
T Consensus 208 --------------------~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 208 --------------------IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp --------------------EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred --------------------EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 0000011223345578888899999999999999999988888876 7888999997753
Q ss_pred ------CEEEEEeCCCcEEEEEccCCcceeEEEE---------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc--CC
Q psy18018 394 ------NILVSGNADSTVKVWDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--HQ 456 (635)
Q Consensus 394 ------~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~ 456 (635)
.++++++.||.|++||+.+++....+.. ++|+++.+ ....+.+ |.
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~ 329 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL------------------EELNFCGIRSL 329 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG------------------GGCCCCCCCSG
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc------------------ccceecccccC
Confidence 3777777788888888776654433221 11111111 0011333 77
Q ss_pred ccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018 457 SLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPL 535 (635)
Q Consensus 457 ~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 535 (635)
..|.++++++ ++|++++.|+.|++||+.+++....+.++...........++....+.... |+.........
T Consensus 330 ~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~- 402 (437)
T 3gre_A 330 NALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------MKRTSTHSVDD- 402 (437)
T ss_dssp GGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE------CC----------
T ss_pred CceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe------cccccccccCc-
Confidence 7888888864 589999999999999999999999888744344445555553332222111 22222221111
Q ss_pred ccceecCceeEEeccCceecccccCC--CeEEEEecCCCeEEEEe
Q psy18018 536 MSSFILNPFYFLIYSQPLLCPHLQFN--SRFVITSSDDGTVKLWD 578 (635)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~v~iwd 578 (635)
...|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 403 ----------~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 ----------SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ----------ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 1237889999999998 88999999999999995
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-35 Score=293.14 Aligned_cols=283 Identities=33% Similarity=0.556 Sum_probs=234.6
Q ss_pred EeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEE
Q psy18018 137 VLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCL 216 (635)
Q Consensus 137 ~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 216 (635)
...+|...|.++++++++|++|+.||+|++||+.+++....+..+...+....+ +++.+++|+.||.|++||+.+++.+
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 334678889999999999999999999999999999998888877766666666 7889999999999999999999999
Q ss_pred EEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018 217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV 296 (635)
Q Consensus 217 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (635)
..+.+|...|.++.++++.+++++.||.|++||+.+.....
T Consensus 207 ~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~--------------------------------------- 247 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT--------------------------------------- 247 (435)
T ss_dssp EEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE---------------------------------------
T ss_pred EEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCce---------------------------------------
Confidence 99999999999999999999999999999999987542110
Q ss_pred EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE
Q psy18018 297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR 376 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~ 376 (635)
.......+...+.++.++++++++|+.||.|++||+.+++.+
T Consensus 248 --------------------------------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 248 --------------------------------------LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp --------------------------------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred --------------------------------------eeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE
Confidence 000112244455566779999999999999999999999999
Q ss_pred EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018 377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 456 (635)
Q Consensus 377 ~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 456 (635)
..+.+|...+.++.++++.++++ +.|+.|++||+.+++.+..+.+|.
T Consensus 290 ~~~~~~~~~v~~~~~~~~~l~~g---------------------------------~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 290 RTLNGHKRGIACLQYRDRLVVSG---------------------------------SSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EEEECCSSCEEEEEEETTEEEEE---------------------------------ETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEcCCCCcEEEEEeCCCEEEEE---------------------------------eCCCeEEEEECCCCCEEEEEeCCc
Confidence 99999999999888765555554 555556666666777888889999
Q ss_pred ccEEEEEecCCEEEEEeCCCcEEEEECCCCc---------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECC
Q psy18018 457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQ---------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK 527 (635)
Q Consensus 457 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~ 527 (635)
..|.++.++++++++|+.||.|++||+.+++ ++..+.. |...|.++++++++|++++.||.|++||+.
T Consensus 337 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 337 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVFRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred CcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC---CCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999999999997665 6777776 889999999999999999999999999998
Q ss_pred CCceee
Q psy18018 528 TGEFST 533 (635)
Q Consensus 528 ~~~~~~ 533 (635)
+.....
T Consensus 414 ~~~~~~ 419 (435)
T 1p22_A 414 NDPAAQ 419 (435)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 876443
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-34 Score=286.39 Aligned_cols=333 Identities=16% Similarity=0.195 Sum_probs=254.4
Q ss_pred EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018 30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107 (635)
Q Consensus 30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd 107 (635)
++++|+ |+|++|++++.++ .+.+||..+++....+..| .++.+..|+ +++||+++.|+.|++||
T Consensus 60 ~~~~~s----~~g~~l~~~~~d~--------~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 60 KGNTFE----KVGSHLYKARLDG--------HDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp TTCEEE----EEETTEEEEEETT--------EEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred cceeee----ecCCeEEEEEcCC--------cEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 589999 9999999998754 4446999999998888888 343555677 88999999988888887
Q ss_pred CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeE
Q psy18018 108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVE 185 (635)
Q Consensus 108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 185 (635)
+. +++....+.+|.+.|++++| ++++|++++.|++|++||+.+++.+..+..+...+
T Consensus 126 ~~---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 184 (420)
T 3vl1_A 126 SN---------------------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184 (420)
T ss_dssp TT---------------------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred CC---------------------CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence 65 44566777899999999999 88999999999999999999999888887665544
Q ss_pred Ee-eeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018 186 LS-HGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG---HTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI 261 (635)
Q Consensus 186 ~~-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 261 (635)
.. ...+++..|++++.|+.|++||+.+++.+..+.. |...+.++.+... .+.. +.
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~--~~------------- 243 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG------TDRQ--LH------------- 243 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC------CCSS--CG-------------
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC------Ccce--ee-------------
Confidence 44 4455678999999999999999999999999875 5566777665210 0000 00
Q ss_pred cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018 262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT 341 (635)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (635)
....
T Consensus 244 ----------------------------------------------------------------------------~~~~ 247 (420)
T 3vl1_A 244 ----------------------------------------------------------------------------EIST 247 (420)
T ss_dssp ----------------------------------------------------------------------------GGCC
T ss_pred ----------------------------------------------------------------------------eccc
Confidence 0011
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 420 (635)
.....++|+|+++++++|+.||.|++||+.+++....+. .|...+.+++|+
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---------------------------- 299 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD---------------------------- 299 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC----------------------------
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe----------------------------
Confidence 223345689999999999999999999999988776664 477889888886
Q ss_pred EEeeCCc-EEEEEeCCCcEEEEeCCCCc-eeeeecc-CCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCcee-------
Q psy18018 421 ICLFDGV-HVVSGSLDTSIRVWEAESGN-LRHTLMG-HQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCL------- 489 (635)
Q Consensus 421 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~------- 489 (635)
|++. +|++++.||.|++||+++++ ++..+.+ |...+.++.+ +++++++++.|+.|++|++...+..
T Consensus 300 ---~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 300 ---GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp ---SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred ---CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 3444 56666667777777777654 3566666 6678888876 4669999999999999998864221
Q ss_pred --EEecCCCcccccEEEEEe--cCC---EEEEEeCCCcEEEEECCC
Q psy18018 490 --QTLSGRNKHQSAVTCLQF--NSR---FVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 490 --~~~~~~~~~~~~v~~~~~--~~~---~l~~~~~d~~i~vwd~~~ 528 (635)
..+.. +...|.+++| ++. .+++++.+|.+.+|++++
T Consensus 377 ~~~~~~~---~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVS---NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECC---SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEcc---CCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12222 6778888888 566 677777899999999874
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4e-34 Score=300.39 Aligned_cols=228 Identities=22% Similarity=0.363 Sum_probs=179.6
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
|+|++++|++|+.||.|++||+.++.....+.+|...|.+++|+ ++.|++++.|+.|++||
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd----------------- 500 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----------------- 500 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC-----------------
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE-----------------
Confidence 66777888888888889999988888888999999999999986 34555555555555554
Q ss_pred cEEEEEeCCCcEEEEeCCCCceee---eeccCCccEEEEEecC----CEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018 427 VHVVSGSLDTSIRVWEAESGNLRH---TLMGHQSLTSGMELRN----NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499 (635)
Q Consensus 427 ~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 499 (635)
........ ...+|...|.++.+++ ..+++++.|+.|++||+++++....+.+ |.
T Consensus 501 ----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~---h~ 561 (694)
T 3dm0_A 501 ----------------TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG---HT 561 (694)
T ss_dssp ----------------TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CS
T ss_pred ----------------CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC---CC
Confidence 43222111 1246888999999864 4799999999999999999999888887 89
Q ss_pred ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
..|.++++ ++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++.+|++++ ++.|+||
T Consensus 562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iw 628 (694)
T 3dm0_A 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------------ANSVIHALCFSPNRYWLCAAT-EHGIKIW 628 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB------------CSSCEEEEEECSSSSEEEEEE-TTEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEE
Confidence 99999999 68999999999999999999988665543 345799999999999988776 5569999
Q ss_pred eCCCCceEEeeeeccCC--------------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018 578 DVKTGEFIRNLVSLDSG--------------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 578 d~~~~~~~~~~~~~~~~--------------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
|+.+++.+..+...... .+...+++++|+|||++|++|+.||. +++|.
T Consensus 629 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~--i~iW~ 690 (694)
T 3dm0_A 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV--IRVWG 690 (694)
T ss_dssp ETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE--EEEEE
T ss_pred ECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe--EEEEe
Confidence 99999988776421110 11123789999999999999999998 55554
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=298.69 Aligned_cols=345 Identities=7% Similarity=0.047 Sum_probs=219.8
Q ss_pred CCCceeeccCcceEEEEEEc--C---------CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeE----E
Q psy18018 71 KDPKVLKGHDDHVITCLQFS--G---------SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC----L 135 (635)
Q Consensus 71 ~~~~~l~~h~~~vi~~~~~s--~---------~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~----~ 135 (635)
+...++. +.+.| .+++|+ + ++||+++.++...-+ .....++++++.|++|++||+.+++. .
T Consensus 125 r~~~~~~-~~~~V-~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~--~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~ 200 (524)
T 2j04_B 125 RRGFIYN-VGGLV-TDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPL--NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKV 200 (524)
T ss_dssp SCEEEEE-CCC---CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------CEEEEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCCce-eEEEecccCCCCccCcCCeEEEEEEecccCCcc--chhhhhhccCCCCceEEEEEccCCCCCceEE
Confidence 3333444 55666 899999 5 799999876532111 11223579999999999999987764 2
Q ss_pred EEeeCCCcceEEEEe--c------CCEEEEEeCCCeEEEEeCCCccce-----------eeccccceeEEeeeccCCCEE
Q psy18018 136 HVLVGHLAAVRCVQY--D------GKLVVSGAYDYMVKIWNPDTEECL-----------HAELQETEVELSHGYALRSRI 196 (635)
Q Consensus 136 ~~l~~h~~~v~~l~~--~------~~~l~s~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l 196 (635)
..+.+|.+.|.+++| + +.+||+++.||+|++||+.+++.. ..+..+...+.++.+.+++.|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 456788999999999 3 469999999999999999876422 233344455566666666799
Q ss_pred EEEeCCCcEEEEECCCC-eEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeee
Q psy18018 197 VSGSDDNTLKVWSATTG-KCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQL 275 (635)
Q Consensus 197 ~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (635)
++|+.||+|++||+.++ .+...+.+|...|.++++
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~-------------------------------------------- 316 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST-------------------------------------------- 316 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE--------------------------------------------
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE--------------------------------------------
Confidence 99999999999999876 445668899999998841
Q ss_pred eccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC-c
Q psy18018 276 IEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG-V 354 (635)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~ 354 (635)
++++++ .
T Consensus 317 ------------------------------------------------------------------------~~s~~g~~ 324 (524)
T 2j04_B 317 ------------------------------------------------------------------------AYSDFEDT 324 (524)
T ss_dssp ------------------------------------------------------------------------ECCTTSCC
T ss_pred ------------------------------------------------------------------------EcCCCCCe
Confidence 022233 3
Q ss_pred EEEEecCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEE
Q psy18018 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSG 432 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~ 432 (635)
+|++++.|++|++||+++++....+.+|.. .+.+++|+ |+++.++++
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-------------------------------p~~~~l~s~ 373 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-------------------------------PQIYSYIYS 373 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-------------------------------TTTTEEEEE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC-------------------------------CCcCeEEEe
Confidence 444444444444444444433333333322 34455554 667778888
Q ss_pred eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCC--CcccccEEEEEe-
Q psy18018 433 SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGR--NKHQSAVTCLQF- 507 (635)
Q Consensus 433 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~- 507 (635)
+.|++|++||++++.....+.+|.+.|.+++++ +++|++|+.||+|++||+... .+...... ..+...+.+++|
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~s 452 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYS 452 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCC
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccC
Confidence 888889999998888888899999999999985 568999999999999998653 22221110 001224667777
Q ss_pred -cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecccccCCCe---EEEEecCCCeEEEEeCCC
Q psy18018 508 -NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR---FVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 508 -~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~v~iwd~~~ 581 (635)
+++.+ .... .+++|+.. ++.....+. .|...|.+++|+|++. ++|+|+.||.|+||++.-
T Consensus 453 p~g~~~-~~~~--~~~~~~~~~~g~~~~~l~-----------gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 453 IKDDKY-RIDS--SYEVYPLTVNDVSKAKID-----------AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp SSSCEE-EECC--CCCCCC------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCCeE-EccC--CceecccccCCcceeeec-----------CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 34433 2222 22333322 233333333 3788999999999965 999999999999999863
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.5e-34 Score=300.79 Aligned_cols=297 Identities=26% Similarity=0.438 Sum_probs=220.4
Q ss_pred CceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEE
Q psy18018 73 PKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQ 149 (635)
Q Consensus 73 ~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~ 149 (635)
...|++|.+.| +|++|+ +++|+||+.|++|++||+.++.. ..+.....+.+|...|.+++
T Consensus 375 ~~~l~~H~~~V-~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------~~~~~~~~~~~h~~~v~~v~ 437 (694)
T 3dm0_A 375 KGTMRAHTDMV-TAIATPIDNADIIVSASRDKSIILWKLTKDDK----------------AYGVAQRRLTGHSHFVEDVV 437 (694)
T ss_dssp EEEEECCSSCE-EEEECCTTCCSEEEEEETTSEEEEEECCCSTT----------------CSCEEEEEEECCSSCEEEEE
T ss_pred hhhcccCCcee-EEEEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------ccccccceecCCCCcEEEEE
Confidence 34688999998 999998 57999999999999999875431 12456678899999999999
Q ss_pred e--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE
Q psy18018 150 Y--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227 (635)
Q Consensus 150 ~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 227 (635)
| ++++|++++.||+|++||+.+ ++.+..+.+|...|.
T Consensus 438 ~s~~g~~l~sgs~Dg~v~vwd~~~-----------------------------------------~~~~~~~~~h~~~v~ 476 (694)
T 3dm0_A 438 LSSDGQFALSGSWDGELRLWDLAA-----------------------------------------GVSTRRFVGHTKDVL 476 (694)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT-----------------------------------------TEEEEEEECCSSCEE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCC-----------------------------------------CcceeEEeCCCCCEE
Confidence 9 788888888877777776543 444556778999999
Q ss_pred EEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhh
Q psy18018 228 SSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDL 305 (635)
Q Consensus 228 ~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (635)
+++|+ ++.|++++.|++|++||...
T Consensus 477 ~~~~s~~~~~l~s~s~D~~i~iwd~~~----------------------------------------------------- 503 (694)
T 3dm0_A 477 SVAFSLDNRQIVSASRDRTIKLWNTLG----------------------------------------------------- 503 (694)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTS-----------------------------------------------------
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEECCC-----------------------------------------------------
Confidence 98873 55677777777777776422
Q ss_pred HhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE---eeeCC
Q psy18018 306 LRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH---TLMGH 382 (635)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~---~~~~~ 382 (635)
..... ...+|
T Consensus 504 -------------------------------------------------------------------~~~~~~~~~~~~h 516 (694)
T 3dm0_A 504 -------------------------------------------------------------------ECKYTISEGGEGH 516 (694)
T ss_dssp -------------------------------------------------------------------CEEEEECSSTTSC
T ss_pred -------------------------------------------------------------------CcceeeccCCCCC
Confidence 11110 11357
Q ss_pred CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEE
Q psy18018 383 QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM 462 (635)
Q Consensus 383 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 462 (635)
...|.+++|+++ .....+++++.|+.|++||+.+++....+.+|...|.++
T Consensus 517 ~~~v~~~~~~~~-----------------------------~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 517 RDWVSCVRFSPN-----------------------------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567 (694)
T ss_dssp SSCEEEEEECSC-----------------------------SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCcEEEEEEeCC-----------------------------CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 778888887631 012356777777888888888888888999999999999
Q ss_pred Eec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018 463 ELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS 538 (635)
Q Consensus 463 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 538 (635)
+++ +++|++++.||.|++||+.+++.+..+. +...+.+++| ++.+++++ .|+.|++||+++++.+..+..+
T Consensus 568 ~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp EECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCC
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccc
Confidence 985 6799999999999999999999887776 4567899999 45666555 4667999999999877766532
Q ss_pred eecC--------ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 539 FILN--------PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 539 ~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
.... +.....+...+++++|||||++|++|+.||+|+|||+..
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 2111 001111222478899999999999999999999999853
No 60
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-34 Score=284.15 Aligned_cols=265 Identities=27% Similarity=0.565 Sum_probs=234.1
Q ss_pred cCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018 341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 420 (635)
.+...+.++.++++++++|+.||.|++||+.+++....+.+|...|.+++++++.+++++.||.|++||+.+++......
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999886554432
Q ss_pred -------EEeeCCcEEEEEeCCCcEEEEeCCCCcee---eeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeE
Q psy18018 421 -------ICLFDGVHVVSGSLDTSIRVWEAESGNLR---HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQ 490 (635)
Q Consensus 421 -------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 490 (635)
....++..+++++.|+.|++||+.+++.. ..+.+|...|.++.++++++++++.||.|++||+.+++.+.
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 23446789999999999999999987665 67889999999999999999999999999999999999999
Q ss_pred EecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018 491 TLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570 (635)
Q Consensus 491 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 570 (635)
.+.. |...|.+++++++++++|+.||.|++||+++++.+..+.. |...|.+++| ++++|++|+.
T Consensus 291 ~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 291 TLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-----------HEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EEEC---CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC-----------CSSCEEEEEC--CSSEEEEEET
T ss_pred EEcC---CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-----------CcCcEEEEEe--cCCEEEEEeC
Confidence 9987 8899999999999999999999999999999987776654 6788999988 8899999999
Q ss_pred CCeEEEEeCCCCc---------eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 571 DGTVKLWDVKTGE---------FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 571 d~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
||.|++||+.+++ .+..+ .+|.+.|.+++| ++.+|++++.||. |..||+..
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~--~~~~l~s~s~Dg~----i~iwd~~~ 414 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEFQIVSSSHDDT----ILIWDFLN 414 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE--CSSCEEECCSSSE----EEEEC---
T ss_pred CCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe--CCCEEEEEeCCCE----EEEEECCC
Confidence 9999999998776 67777 578999999999 7889999999998 44555443
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-34 Score=280.00 Aligned_cols=309 Identities=14% Similarity=0.198 Sum_probs=231.0
Q ss_pred EeeCCCcceEEEEec------CCEEEEEeCCCeEEEEeCCCccceeecccc------ceeEEeeeccC----CCEEEEEe
Q psy18018 137 VLVGHLAAVRCVQYD------GKLVVSGAYDYMVKIWNPDTEECLHAELQE------TEVELSHGYAL----RSRIVSGS 200 (635)
Q Consensus 137 ~l~~h~~~v~~l~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~----~~~l~~~~ 200 (635)
...+|.++|++++|. ...+++++.++.|++||+.+++.+..+... ..+......+. +.+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 445899999999994 456777777889999999988776554422 23444444444 45899999
Q ss_pred CCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccc
Q psy18018 201 DDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQF 280 (635)
Q Consensus 201 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (635)
.||.|++||+.+++.+..+.+|...|.++.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~-------------------------------------------------- 122 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELK-------------------------------------------------- 122 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEE--------------------------------------------------
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEE--------------------------------------------------
Confidence 999999999999999999999999888877
Q ss_pred ccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEe
Q psy18018 281 QRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSG 359 (635)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~ 359 (635)
|+| ++.+|+++
T Consensus 123 --------------------------------------------------------------------~~~~~~~~l~s~ 134 (366)
T 3k26_A 123 --------------------------------------------------------------------FHPRDPNLLLSV 134 (366)
T ss_dssp --------------------------------------------------------------------ECSSCTTEEEEE
T ss_pred --------------------------------------------------------------------ECCCCCCEEEEE
Confidence 555 56677777
Q ss_pred cCCCeEEEEEccCCceEEee---eCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE---EEeeCCcEEEE
Q psy18018 360 SLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR---ICLFDGVHVVS 431 (635)
Q Consensus 360 ~~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~l~~ 431 (635)
+.||.|++||+.+++.+..+ ..|...|.+++|+ ++.|++++.||.|++||+.+++...... .+++++..+..
T Consensus 135 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence 77888888888877777777 6899999999997 5688888888888888887654332111 12233222221
Q ss_pred EeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCce--------------eEEecCCCc
Q psy18018 432 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQC--------------LQTLSGRNK 497 (635)
Q Consensus 432 ~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~ 497 (635)
..... .........+|...|.++.++++++++++.|+.|++||+.+++. +..+..
T Consensus 215 ~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--- 283 (366)
T 3k26_A 215 ISQKI--------HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--- 283 (366)
T ss_dssp CCEEE--------CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---
T ss_pred cceee--------ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc---
Confidence 11100 01223445569999999999999999999999999999987644 555555
Q ss_pred ccccEEEEEe--c--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEec--cCceecccccCCCeEEEEecCC
Q psy18018 498 HQSAVTCLQF--N--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIY--SQPLLCPHLQFNSRFVITSSDD 571 (635)
Q Consensus 498 ~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d 571 (635)
|...|.+++| + +++|++++.||.|++||+.+++....... ....| ...|++++|+|++++|++++.|
T Consensus 284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT-------TLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE-------EECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce-------EEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 7777887877 5 89999999999999999998864431111 11123 6899999999999999999999
Q ss_pred CeEEEEeCCC
Q psy18018 572 GTVKLWDVKT 581 (635)
Q Consensus 572 ~~v~iwd~~~ 581 (635)
|.|++||+.+
T Consensus 357 g~i~iwd~~~ 366 (366)
T 3k26_A 357 ASIWRWDRLR 366 (366)
T ss_dssp SEEEEEEC--
T ss_pred CEEEEEEecC
Confidence 9999999863
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.6e-34 Score=280.83 Aligned_cols=304 Identities=14% Similarity=0.157 Sum_probs=223.7
Q ss_pred EEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCCcc------ceeeccccceeEEeeec-cC----C---CEEEEE
Q psy18018 134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEE------CLHAELQETEVELSHGY-AL----R---SRIVSG 199 (635)
Q Consensus 134 ~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~-~~----~---~~l~~~ 199 (635)
....+.+|.++|++++|+.++|++++.||+|++||+.+++ .+..+..+...+..+.+ +. + .+|+++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4567789999999999977999999999999999999987 56666655554444444 44 5 789999
Q ss_pred eCCCcEEEEECCCCeE-----EEEEeCC-----CCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018 200 SDDNTLKVWSATTGKC-----LRTLIGH-----TGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI 269 (635)
Q Consensus 200 ~~dg~i~vwd~~~~~~-----~~~~~~h-----~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 269 (635)
+.||.|++||+.+++. +..+..| ...|.++.|...
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------- 132 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS----------------------------------- 132 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC-----------------------------------
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec-----------------------------------
Confidence 9999999999888776 7777777 477777665400
Q ss_pred eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018 270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (635)
-
T Consensus 133 -------------------------------------------------------------------------------~ 133 (397)
T 1sq9_A 133 -------------------------------------------------------------------------------N 133 (397)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred EecCcE-EEEecCCCeEEEEEccC------CceEE-----ee-------eCCCcceeEEEEeCCEEEEEeCCCcEEEEEc
Q psy18018 350 QFDGVH-VVSGSLDTSIRVWEAES------GNLRH-----TL-------MGHQSLTSGMELRNNILVSGNADSTVKVWDI 410 (635)
Q Consensus 350 s~~~~~-l~~~~~dg~i~v~~~~~------~~~~~-----~~-------~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~ 410 (635)
.|++.+ |++++.||.|++||+.+ ++.+. .+ ..|...+.+++|+
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------ 195 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS------------------ 195 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC------------------
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC------------------
Confidence 033444 44444444444444443 22222 33 3467777777775
Q ss_pred cCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeecc---C---CccEEEEEe--cCCEEEEEeCC---CcEE
Q psy18018 411 VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---H---QSLTSGMEL--RNNILVSGNAD---STVK 479 (635)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~---~~~v~~~~~--~~~~l~s~~~d---g~i~ 479 (635)
|++ .+++++.|+.|++||+++++.+..+.. | ...+.++.+ ++++|++++.| +.|+
T Consensus 196 -------------~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 196 -------------ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp -------------TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred -------------CCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 455 677777778888888888888888888 8 899999998 46799999999 9999
Q ss_pred EEECCCCceeEEecCCC----------cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec------ccee-
Q psy18018 480 VWDIVSGQCLQTLSGRN----------KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM------SSFI- 540 (635)
Q Consensus 480 iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------~~~~- 540 (635)
+||+.+++.+..+.... .|...|.+++| ++++|++++.||.|++||+++++.+..+. .+..
T Consensus 262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred EEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence 99999999888876411 16788999999 58999999999999999999998877766 2100
Q ss_pred ---cCceeEEeccCceecccccCCC----------eEEEEecCCCeEEEEeCCCCc
Q psy18018 541 ---LNPFYFLIYSQPLLCPHLQFNS----------RFVITSSDDGTVKLWDVKTGE 583 (635)
Q Consensus 541 ---~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~v~iwd~~~~~ 583 (635)
........|...|++++|+|++ ++|++++.||.|++||+++|+
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 0000001137899999999998 799999999999999998764
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-33 Score=261.90 Aligned_cols=288 Identities=24% Similarity=0.344 Sum_probs=228.1
Q ss_pred CCCCceeeccCcceEEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEE
Q psy18018 70 IKDPKVLKGHDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCV 148 (635)
Q Consensus 70 ~~~~~~l~~h~~~vi~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l 148 (635)
.+..+.+.+|.+.| ++++|. +++|++++.||.|++||+. +++....+..|...|.++
T Consensus 8 ~~~~~~l~~h~~~v-~~~~~~~~~~l~s~~~dg~v~vw~~~---------------------~~~~~~~~~~~~~~v~~~ 65 (313)
T 3odt_A 8 YQLSATLKGHDQDV-RDVVAVDDSKVASVSRDGTVRLWSKD---------------------DQWLGTVVYTGQGFLNSV 65 (313)
T ss_dssp CEEEEEECCCSSCE-EEEEEEETTEEEEEETTSEEEEEEES---------------------SSEEEEEEEECSSCEEEE
T ss_pred HHHHHHhhCCCCCc-EEEEecCCCEEEEEEcCCcEEEEECC---------------------CCEEEEEeecCCccEEEE
Confidence 36678899999998 899998 9999999999999888875 345667788999999999
Q ss_pred Ee--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCe
Q psy18018 149 QY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226 (635)
Q Consensus 149 ~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v 226 (635)
+| ++++|++++.||.|++|++.... ..+.+..+.+|...|
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATS--------------------------------------GEDPLYTLIGHQGNV 107 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCT--------------------------------------TSCC-CEECCCSSCE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecC--------------------------------------CCCcccchhhcccCE
Confidence 99 89999999999999999986532 223345566788888
Q ss_pred EEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018 227 WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL 306 (635)
Q Consensus 227 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
.++.++++.+++++.||.|++||.......
T Consensus 108 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-------------------------------------------------- 137 (313)
T 3odt_A 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN-------------------------------------------------- 137 (313)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTEEEEE--------------------------------------------------
T ss_pred EEEEecCCEEEEEeCCCCEEEEcCCcEEEe--------------------------------------------------
Confidence 888888888888888888888872211100
Q ss_pred hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeC-CCc
Q psy18018 307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQS 384 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~ 384 (635)
...+......+++.| ++.++++++.||.|++|| .++....+.. |..
T Consensus 138 ------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~ 185 (313)
T 3odt_A 138 ------------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND 185 (313)
T ss_dssp ------------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS
T ss_pred ------------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc
Confidence 000112233345666 889999999999999999 4556666666 788
Q ss_pred ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe
Q psy18018 385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464 (635)
Q Consensus 385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 464 (635)
.+.+++++ +++. +++++.|+.|++||+++++.+..+.+|...+.++.+
T Consensus 186 ~i~~~~~~-------------------------------~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T 3odt_A 186 VVRHLAVV-------------------------------DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL 233 (313)
T ss_dssp CEEEEEEE-------------------------------ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred cEEEEEEc-------------------------------CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence 88888775 4444 677778888888888888899999999999999999
Q ss_pred cCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeee
Q psy18018 465 RNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPL 535 (635)
Q Consensus 465 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 535 (635)
+++ .+++++.||.|++||+.+++.+..+.. |...|.+++| +++ +++++.||.|++||+++++.....
T Consensus 234 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 234 LPNGDIVSCGEDRTVRIWSKENGSLKQVITL---PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp CTTSCEEEEETTSEEEEECTTTCCEEEEEEC---SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred ecCCCEEEEecCCEEEEEECCCCceeEEEec---cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 644 799999999999999999999999887 7789999999 455 777999999999999988765544
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-34 Score=283.46 Aligned_cols=338 Identities=11% Similarity=0.183 Sum_probs=245.2
Q ss_pred CCeEEEEe-eCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC---cc---ceeeccccceeEEeeeccCCCEEEEEe
Q psy18018 131 SGECLHVL-VGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT---EE---CLHAELQETEVELSHGYALRSRIVSGS 200 (635)
Q Consensus 131 ~~~~~~~l-~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (635)
+++++..+ .+|.++|++++| ++++|++++.||+|++||+.+ +. ....+.+...+....+.+.+..|++++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe
Confidence 46778888 899999999999 578999999999999999877 33 222333344555555556678999999
Q ss_pred CCCcEEEEECC---CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeec
Q psy18018 201 DDNTLKVWSAT---TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIE 277 (635)
Q Consensus 201 ~dg~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (635)
.||.|++||+. +++.+..+.+| .+..+.++... ..+..+.++
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----~~~~~~~~~----------------------------- 175 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----KNEYAVRMR----------------------------- 175 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----SCCCEEEEE-----------------------------
T ss_pred CCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----cccCceEEE-----------------------------
Confidence 99999999984 56666655544 44444432100 000000000
Q ss_pred cccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEE
Q psy18018 278 PQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVV 357 (635)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 357 (635)
..+++++.+++
T Consensus 176 ---------------------------------------------------------------------~~~~~~~~~l~ 186 (437)
T 3gre_A 176 ---------------------------------------------------------------------AFVNEEKSLLV 186 (437)
T ss_dssp ---------------------------------------------------------------------EEECSSCEEEE
T ss_pred ---------------------------------------------------------------------EEEcCCCCEEE
Confidence 11557899999
Q ss_pred EecCCCeEEEEEccCCceEEeeeC--CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCC
Q psy18018 358 SGSLDTSIRVWEAESGNLRHTLMG--HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLD 435 (635)
Q Consensus 358 ~~~~dg~i~v~~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d 435 (635)
+++.||.|++||+.+++.+..+.. |...|.+++|+ |++++|++++.|
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-------------------------------~~~~~l~s~~~d 235 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-------------------------------EECCVLILGTTR 235 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-------------------------------TTSCEEEEEETT
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-------------------------------CCCCEEEEEcCC
Confidence 999999999999999999999988 88899998875 566677788888
Q ss_pred CcEEEEeCCCCceeeeec-cCCccEEEEEec------CCEEEEEeCCCcEEEEECCCCceeEEecCCC------------
Q psy18018 436 TSIRVWEAESGNLRHTLM-GHQSLTSGMELR------NNILVSGNADSTVKVWDIVSGQCLQTLSGRN------------ 496 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------ 496 (635)
|.|++||+++++.+..+. .|...|.++.+. +.++++++.||.|++||+.+++.+..+..+.
T Consensus 236 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
T 3gre_A 236 GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315 (437)
T ss_dssp SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence 888888888888888776 788899999654 3389999999999999999999888777431
Q ss_pred -----------cccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018 497 -----------KHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564 (635)
Q Consensus 497 -----------~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 564 (635)
.|...|.++++ ++++|++++.|+.|++||+.+++....+..+.. ....+....++++..+
T Consensus 316 ~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 316 KGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSR--------FSDVFIPTQVTANLTM 387 (437)
T ss_dssp SSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC----------CCCEEEEEEEETTEEE
T ss_pred cccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccc--------cCceEEEEEeecceEE
Confidence 16667888888 577999999999999999999987777654321 1233445566666666
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC--CeEEEEccCCCeeEeEEE
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET--KLVCAVGSRNGTEETKLL 626 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d--~~~l~~~~~dg~~~~~l~ 626 (635)
++.. |+...+..+... ..|.+.|.+++|+++ +.+|++|+.||. ++||
T Consensus 388 ~~~~--------~~~~~~~~~~~~-----~~h~~~I~~i~~~~~~~~~~l~s~~~dG~--I~iw 436 (437)
T 3gre_A 388 LLRK--------MKRTSTHSVDDS-----LYHHDIINSISTCEVDETPLLVACDNSGL--IGIF 436 (437)
T ss_dssp EEEE--------CC------------------CCCEEEEEEEESSSSEEEEEEETTSC--EEEE
T ss_pred EEEe--------cccccccccCcc-----cccccceeeEeeeccCCceEEEEEcCCce--EEEe
Confidence 6554 333444444333 468899999999998 889999999999 6666
No 65
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-34 Score=281.07 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=227.0
Q ss_pred CceeeccCcceEEEEEEcCCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--
Q psy18018 73 PKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY-- 150 (635)
Q Consensus 73 ~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-- 150 (635)
.+.+.+|.+.| ++++|+.++|++++.||.|++||+.+++. ....+.+..+.+|..+|.+++|
T Consensus 9 ~~~~~~h~~~i-~~~~~~~~~l~s~~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 9 ANAGKAHDADI-FSVSACNSFTVSCSGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEESSCSSSCE-EEEEECSSEEEEEETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhcCe-EEEEecCCeEEEEcCCCEEEEEECCCccc---------------ccCCCcceEEecCCCcEEEEEEec
Confidence 45678999988 99999999999999999999999875531 0112356778899999999999
Q ss_pred c----C---CEEEEEeCCCeEEEEeCCCccc-----eeecccc------ceeEEeeec----cCCCE-EEEEeCCCcEEE
Q psy18018 151 D----G---KLVVSGAYDYMVKIWNPDTEEC-----LHAELQE------TEVELSHGY----ALRSR-IVSGSDDNTLKV 207 (635)
Q Consensus 151 ~----~---~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~~~~~dg~i~v 207 (635)
+ + ++|++++.||.|++||+.+++. ...+..+ ..+...... +.+.. +++++.||.|++
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 6 8 8999999999999999998876 6655554 334444444 45667 778888888888
Q ss_pred EECCC------CeEEE-----EEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018 208 WSATT------GKCLR-----TLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI 276 (635)
Q Consensus 208 wd~~~------~~~~~-----~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (635)
||+.+ ++.+. .+.++ +..
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~----------------------------- 181 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGT----------------------VES----------------------------- 181 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEE----------------------ECC-----------------------------
T ss_pred EeCCccccccccceeeccCcceeeee----------------------ecc-----------------------------
Confidence 88765 32222 11100 000
Q ss_pred ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE
Q psy18018 277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV 356 (635)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 356 (635)
..........++++|++ ++
T Consensus 182 ------------------------------------------------------------~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 182 ------------------------------------------------------------PMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp ------------------------------------------------------------SSSSCCCCCEEEECTTS-EE
T ss_pred ------------------------------------------------------------ccCCCCCceEEEECCCc-eE
Confidence 01122345567789999 99
Q ss_pred EEecCCCeEEEEEccCCceEEeeeC---C---CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018 357 VSGSLDTSIRVWEAESGNLRHTLMG---H---QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV 430 (635)
Q Consensus 357 ~~~~~dg~i~v~~~~~~~~~~~~~~---~---~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~ 430 (635)
++++.||.|++||+.+++.+..+.. | ...+.+++|+ |++++|+
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-------------------------------~~~~~l~ 249 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-------------------------------PQGSLLA 249 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-------------------------------SSTTEEE
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-------------------------------CCCCEEE
Confidence 9999999999999999999999988 8 8888888876 4555666
Q ss_pred EEeCC---CcEEEEeCCCCceeeeecc-------------CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018 431 SGSLD---TSIRVWEAESGNLRHTLMG-------------HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 431 ~~~~d---~~i~~~d~~~~~~~~~~~~-------------~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 492 (635)
+++.| +.|++||+.+++.+..+.+ |...|.++.++ +++|++++.||.|++||+.+++.+..+
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 66666 7777777777777777777 99999999985 679999999999999999999999988
Q ss_pred c------CCCcc---------------cccEEEEEe--cC----------CEEEEEeCCCcEEEEECCCCc
Q psy18018 493 S------GRNKH---------------QSAVTCLQF--NS----------RFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 493 ~------~~~~~---------------~~~v~~~~~--~~----------~~l~~~~~d~~i~vwd~~~~~ 530 (635)
. . | ...|.+++| ++ ++|++++.||.|++|++++++
T Consensus 330 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 330 NMHCDDIE---IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECCGGGCS---SGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ecccCccc---chhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8 5 5 889999999 45 699999999999999998763
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=294.28 Aligned_cols=360 Identities=11% Similarity=0.064 Sum_probs=231.0
Q ss_pred eEEEEeeCCCcceEEEEe--cC---------CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC
Q psy18018 133 ECLHVLVGHLAAVRCVQY--DG---------KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD 201 (635)
Q Consensus 133 ~~~~~l~~h~~~v~~l~~--~~---------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (635)
+....+. +.+.|.+++| ++ ++||+++.++.. . ...+....+++++.
T Consensus 125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~--------------~~~~~~~~laS~s~ 181 (524)
T 2j04_B 125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E--------------PLNEHLEMFDKEKH 181 (524)
T ss_dssp SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------
T ss_pred cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C--------------ccchhhhhhccCCC
Confidence 3334443 6789999999 54 789999876531 0 01345677899999
Q ss_pred CCcEEEEECCCCeEE----EEEeCCCCCeEEEEeeC--------CEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018 202 DNTLKVWSATTGKCL----RTLIGHTGGVWSSQMAG--------NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI 269 (635)
Q Consensus 202 dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 269 (635)
|++|++||+.+++.. ..+.+|.+.|++++|.. .+|++++.||+|++||+...........
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-------- 253 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK-------- 253 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--------
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce--------
Confidence 999999999877642 45677889999999963 5999999999999999865421000000
Q ss_pred eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018 270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (635)
....+ ......+.....+++|
T Consensus 254 ----~~~~p-------------------------------------------------------~~~l~~h~~~v~sv~~ 274 (524)
T 2j04_B 254 ----MCEKP-------------------------------------------------------SLTLSLADSLITTFDF 274 (524)
T ss_dssp ----CCCSC-------------------------------------------------------SEEECCTTTCEEEEEE
T ss_pred ----eecCc-------------------------------------------------------eEEEEcCCCCEEEEEe
Confidence 00000 0000011233445667
Q ss_pred EecCcEEEEecCCCeEEEEEccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC-c
Q psy18018 350 QFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG-V 427 (635)
Q Consensus 350 s~~~~~l~~~~~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~ 427 (635)
+++ ..|++|+.||.|++||+.++. +...+.+|...|.++++. +++++ .
T Consensus 275 s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~-----------------------------~s~~g~~ 324 (524)
T 2j04_B 275 LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA-----------------------------YSDFEDT 324 (524)
T ss_dssp SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE-----------------------------CCTTSCC
T ss_pred cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE-----------------------------cCCCCCe
Confidence 765 489999999999999998764 455688999999988421 11344 4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeccCCc--cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEE
Q psy18018 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT 503 (635)
Q Consensus 428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 503 (635)
+|++++.|++|++||+++++....+.+|.. .|.+++|+ ++.+++++.|++|++||++++.++..+.+ |...|+
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~ 401 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTIT 401 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---CCCceE
Confidence 566666677777777766666666666643 35566664 56899999999999999999988888877 999999
Q ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-
Q psy18018 504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK- 580 (635)
Q Consensus 504 ~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~- 580 (635)
+++| ++++|++|+.||+|++||+..+. ....... . ...+...+.+++|+|+++.+. ... .+++|+..
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~---~---~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~ 471 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNS---S---ATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTV 471 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSST-TTCC------------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC---
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHhh-ccccccC---c---cceeeeEEEEeccCCCCCeEE-ccC--Cceeccccc
Confidence 9999 58999999999999999986542 1111100 0 000123567899999998653 222 24455443
Q ss_pred CCceEEeeeeccCCCCCceEEEEEeCCCCe---EEEEccCCCeeEeEEEEEeeec
Q psy18018 581 TGEFIRNLVSLDSGGSGGVVWRIRASETKL---VCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~---~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
++..+..+ .+|...|.+|+|+|++. +||+|+.+|. ++||.++.+.
T Consensus 472 ~g~~~~~l-----~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~--vrlw~l~~~~ 519 (524)
T 2j04_B 472 NDVSKAKI-----DAHGINITCTKWNETSAGGKCYAFSNSAGL--LTLEYLSLEH 519 (524)
T ss_dssp ---------------CCCSCCCEEECCSTTTTTEEEEECTTSE--EEEEECSCC-
T ss_pred CCcceeee-----cCCCceEEEEECCCCCCccHHHHhhccCce--EEEEEccccc
Confidence 46666667 57889999999999964 9999999999 7888887664
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=264.90 Aligned_cols=292 Identities=20% Similarity=0.303 Sum_probs=232.5
Q ss_pred CCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--C
Q psy18018 14 PIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--G 91 (635)
Q Consensus 14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~ 91 (635)
+.+..+.|.||.+.| ++++|. ++++|++++.++ .+.+||..+++....+..|.+.+ .+++|+ +
T Consensus 7 ~~~~~~~l~~h~~~v-~~~~~~-----~~~~l~s~~~dg--------~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~ 71 (313)
T 3odt_A 7 GYQLSATLKGHDQDV-RDVVAV-----DDSKVASVSRDG--------TVRLWSKDDQWLGTVVYTGQGFL-NSVCYDSEK 71 (313)
T ss_dssp CCEEEEEECCCSSCE-EEEEEE-----ETTEEEEEETTS--------EEEEEEESSSEEEEEEEECSSCE-EEEEEETTT
T ss_pred cHHHHHHhhCCCCCc-EEEEec-----CCCEEEEEEcCC--------cEEEEECCCCEEEEEeecCCccE-EEEEECCCC
Confidence 345557899999999 999994 578899887654 44569999999999999999888 999999 9
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCCeEEEEeCCC
Q psy18018 92 SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDT 171 (635)
Q Consensus 92 ~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg~v~iwd~~~ 171 (635)
++|++++.|+.|++|++... .+.+++..+.+|...|.+++|+++++++++.||.|++|| .
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~ 131 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFAT------------------SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E 131 (313)
T ss_dssp TEEEEEETTSCEEEEETTCC------------------TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T
T ss_pred CEEEEecCCCeEEEEEeeec------------------CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C
Confidence 99999999999999998743 345667788899999999999999999999999999999 5
Q ss_pred ccceeeccccceeE-Eeeecc-CCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCCCeEEEEeeCCEEEEeeCceeEEEe
Q psy18018 172 EECLHAELQETEVE-LSHGYA-LRSRIVSGSDDNTLKVWSATTGKCLRTLIG-HTGGVWSSQMAGNIIISGSTDRTLKGW 248 (635)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~~w 248 (635)
++....+..+.... .....+ .++.+++++.||.|++|| ..+....+.. |...+.++.
T Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~------------------ 191 (313)
T 3odt_A 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA------------------ 191 (313)
T ss_dssp TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEE------------------
T ss_pred CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEE------------------
Confidence 55555554444333 333334 578888888899999998 4555555555 555555544
Q ss_pred cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018 249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328 (635)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (635)
T Consensus 192 -------------------------------------------------------------------------------- 191 (313)
T 3odt_A 192 -------------------------------------------------------------------------------- 191 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEE
Q psy18018 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW 408 (635)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iw 408 (635)
++|++. +++++.+|.|++||+.+++.+..+..|...+.+++++
T Consensus 192 --------------------~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---------------- 234 (313)
T 3odt_A 192 --------------------VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL---------------- 234 (313)
T ss_dssp --------------------EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------
T ss_pred --------------------EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe----------------
Confidence 677777 8888889999999999999999999999999999886
Q ss_pred EccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEECCCCc
Q psy18018 409 DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 487 (635)
|++ .+++++.|+.|++||+.+++....+..|...+.++.++++ .+++++.||.|++||+.+++
T Consensus 235 ---------------~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 235 ---------------PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp ---------------TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred ---------------cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 344 3667777888888888888999999999999999998533 47789999999999999887
Q ss_pred eeEEec
Q psy18018 488 CLQTLS 493 (635)
Q Consensus 488 ~~~~~~ 493 (635)
......
T Consensus 299 ~~~~~~ 304 (313)
T 3odt_A 299 WASEDE 304 (313)
T ss_dssp CCC---
T ss_pred eeehhh
Confidence 665544
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=269.23 Aligned_cols=299 Identities=16% Similarity=0.225 Sum_probs=238.7
Q ss_pred eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee-ccCCCEEEEEeCCCcEEEEE
Q psy18018 133 ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG-YALRSRIVSGSDDNTLKVWS 209 (635)
Q Consensus 133 ~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~vwd 209 (635)
.....+.+|.++|++++| ++++|++++.||.|++||+.+++.+..+..+...+..+. .+++.+|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 445678899999999999 899999999999999999999999888876655544444 45678999999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCc-----eeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018 210 ATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTD-----RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282 (635)
Q Consensus 210 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (635)
+.+++.+..+. |...+.++.|+ ++.+++++.+ |.|++||+......
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-------------------------- 155 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT-------------------------- 155 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT--------------------------
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc--------------------------
Confidence 99999998887 88889888874 6777777777 77777775442100
Q ss_pred ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD 362 (635)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 362 (635)
T Consensus 156 -------------------------------------------------------------------------------- 155 (369)
T 3zwl_B 156 -------------------------------------------------------------------------------- 155 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEEccCCceEEeeeCCCc--ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEE
Q psy18018 363 TSIRVWEAESGNLRHTLMGHQS--LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRV 440 (635)
Q Consensus 363 g~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 440 (635)
..+ ..........+..|.. .+.+++++ |+++++++++.|+.|++
T Consensus 156 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 156 HEL---TKVSEEPIHKIITHEGLDAATVAGWS-------------------------------TKGKYIIAGHKDGKISK 201 (369)
T ss_dssp CCE---EEECSSCSEEEECCTTCCCEEEEEEC-------------------------------GGGCEEEEEETTSEEEE
T ss_pred eee---cccccceeeeccCCcCccceeEEEEc-------------------------------CCCCEEEEEcCCCEEEE
Confidence 000 0011122233334444 55555554 66777888888888888
Q ss_pred EeCCC-CceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEE
Q psy18018 441 WEAES-GNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS 515 (635)
Q Consensus 441 ~d~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 515 (635)
||+.+ ++....+..|...|.++.+ ++++|++++.|+.|++||+.+++.+..+. +...+.++++ ++++++++
T Consensus 202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEe
Confidence 88888 6788888999999999998 46699999999999999999999888887 5677888888 68999999
Q ss_pred eCCC--------------cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 516 SDDG--------------TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 516 ~~d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
+.++ .+++||+.+++....+.. |...|++++|+|++++|++++.||.|++|++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-----------HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEEEEC-----------CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhheec-----------ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 9988 899999999987776654 688999999999999999999999999999987
Q ss_pred CceEEe
Q psy18018 582 GEFIRN 587 (635)
Q Consensus 582 ~~~~~~ 587 (635)
+.....
T Consensus 347 ~~~~~~ 352 (369)
T 3zwl_B 347 SYFDFK 352 (369)
T ss_dssp HHHTCC
T ss_pred ccchhH
Confidence 664433
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=278.10 Aligned_cols=344 Identities=17% Similarity=0.232 Sum_probs=237.6
Q ss_pred ceeeeeeecCCCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEE
Q psy18018 59 RSVEINWRTRPIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECL 135 (635)
Q Consensus 59 ~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~ 135 (635)
+..+.+|+....+....+.+|.+.| ++++|+ +++||+++.||.|++||+.+++... ... ....
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~------~~~~ 87 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGI-NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-------YYT------CKAV 87 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCE-EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-------CEE------ECEE
T ss_pred cCcceeeccccCcceeeeeccCCcE-EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-------eEe------cccc
Confidence 3345569999889999999999998 999997 7999999999999999998764210 000 0000
Q ss_pred EE-----eeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc---CCCEEEEEeCCCc
Q psy18018 136 HV-----LVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA---LRSRIVSGSDDNT 204 (635)
Q Consensus 136 ~~-----l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~ 204 (635)
.. ..+|...|.+++| ++.+|++++.||.|++||+.+++....+............+ .+..+++++.++.
T Consensus 88 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (408)
T 4a11_B 88 CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167 (408)
T ss_dssp EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence 11 1369999999999 56799999999999999999998887776665555554444 3448999999999
Q ss_pred EEEEECCCCeEEEEEeCCCCCeEEEEee--CC-EEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018 205 LKVWSATTGKCLRTLIGHTGGVWSSQMA--GN-IIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ 281 (635)
Q Consensus 205 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (635)
|++||+.+++.+..+.+|...|.+++|+ ++ .+++++.||.|++||+......
T Consensus 168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~------------------------- 222 (408)
T 4a11_B 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC------------------------- 222 (408)
T ss_dssp EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-------------------------
T ss_pred EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-------------------------
Confidence 9999999999999999999999999995 44 5889999999999987653210
Q ss_pred cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018 282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL 361 (635)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 361 (635)
T Consensus 223 -------------------------------------------------------------------------------- 222 (408)
T 4a11_B 223 -------------------------------------------------------------------------------- 222 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEc----cCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE--------------EE
Q psy18018 362 DTSIRVWEA----ESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF--------------RI 421 (635)
Q Consensus 362 dg~i~v~~~----~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------~~ 421 (635)
+..++. ...........|...|.+++|+ +.+|++++.||.+++||+.+++..... ..
T Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (408)
T 4a11_B 223 ---LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299 (408)
T ss_dssp ---SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred ---cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence 000000 0111223346788999999997 669999999999999999887643221 12
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 499 (635)
....+..+++++.++.|++||+.+++.+..+.+|...|.+++++ +++|++++.||.|++||+.+++.+..... ..
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~ 376 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE---TT 376 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc---eE
Confidence 23345677888899999999999999999999999999999885 67999999999999999999887765543 22
Q ss_pred ccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018 500 SAVTCLQF-NSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 500 ~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~ 528 (635)
....+.. ....+.+.+.|+.+++|+...
T Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 377 -TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ------------------------------
T ss_pred -eccccccccceeecccCccCceeecCCcc
Confidence 1222223 355566778899999998764
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-33 Score=271.21 Aligned_cols=300 Identities=14% Similarity=0.201 Sum_probs=235.3
Q ss_pred CccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEE
Q psy18018 18 PKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIV 95 (635)
Q Consensus 18 ~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~ 95 (635)
...|.||.+.| ++++|+ |+|++|++++.++ .+.+||..+++.+..+.+|.+.+ .+++|+ +++|+
T Consensus 25 ~~~l~~h~~~v-~~~~~s----~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 25 AIKLTGHERPL-TQVKYN----KEGDLLFSCSKDS--------SASVWYSLNGERLGTLDGHTGTI-WSIDVDCFTKYCV 90 (369)
T ss_dssp EEEEECCSSCE-EEEEEC----TTSCEEEEEESSS--------CEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEE
T ss_pred cEEEEEeeceE-EEEEEc----CCCCEEEEEeCCC--------EEEEEeCCCchhhhhhhhcCCcE-EEEEEcCCCCEEE
Confidence 35789999999 999999 9999999997654 44469999999999999999988 999999 89999
Q ss_pred EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC-----CeEEEEe
Q psy18018 96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD-----YMVKIWN 168 (635)
Q Consensus 96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d-----g~v~iwd 168 (635)
+++.|+.|++||+.++ +.+..+. |..+|.+++| +++++++++.+ |.|++||
T Consensus 91 s~~~dg~i~iwd~~~~---------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d 148 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNG---------------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYE 148 (369)
T ss_dssp EEETTTEEEEEETTTC---------------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEE
T ss_pred EEeCCCeEEEEECCCC---------------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEE
Confidence 9999999988888754 4455555 8889999999 89999999999 9999999
Q ss_pred CCCccceee-----------ccccc---eeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEeeC
Q psy18018 169 PDTEECLHA-----------ELQET---EVELSHGYALRSRIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMAG 233 (635)
Q Consensus 169 ~~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~ 233 (635)
+........ ...+. .+......+.+..+++++.||.|++||+.+ ++.+..+..|...|.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--- 225 (369)
T 3zwl_B 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ--- 225 (369)
T ss_dssp EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE---
T ss_pred ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE---
Confidence 887653221 11111 344445556678899999999999999988 788888888887777666
Q ss_pred CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018 234 NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313 (635)
Q Consensus 234 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (635)
T Consensus 226 -------------------------------------------------------------------------------- 225 (369)
T 3zwl_B 226 -------------------------------------------------------------------------------- 225 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-
Q psy18018 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR- 392 (635)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~- 392 (635)
|+|++.+|++++.||.|++||+.+++.+..+. +...+..++++
T Consensus 226 -----------------------------------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 269 (369)
T 3zwl_B 226 -----------------------------------FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP 269 (369)
T ss_dssp -----------------------------------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS
T ss_pred -----------------------------------ECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC
Confidence 66677778888888888888888887777776 66788888887
Q ss_pred -CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEE
Q psy18018 393 -NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL 469 (635)
Q Consensus 393 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l 469 (635)
+..+++++.++...+|.... ......+++||..+++.+..+.+|...|.+++++ +++|
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~-------------------~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSA-------------------NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp SSSEEEEEECCC--------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCceEEEeecCCCceEEEEec-------------------CCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence 66888888888776665432 1123479999999999999999999999999984 6699
Q ss_pred EEEeCCCcEEEEECCCCceeEE
Q psy18018 470 VSGNADSTVKVWDIVSGQCLQT 491 (635)
Q Consensus 470 ~s~~~dg~i~iwd~~~~~~~~~ 491 (635)
++++.||.|++|++..+.....
T Consensus 331 ~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp EEEETTSEEEEEEECHHHHTCC
T ss_pred EEEcCCCeEEEEECccccchhH
Confidence 9999999999999987654333
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-33 Score=272.46 Aligned_cols=293 Identities=9% Similarity=0.132 Sum_probs=217.4
Q ss_pred EeCCCCeEEEEeeCCCcceEEEEe--cC-CEEEEEeCCCeEEEEeCCCccceeecc--ccceeEEeeeccC--CCEEEEE
Q psy18018 127 WHIESGECLHVLVGHLAAVRCVQY--DG-KLVVSGAYDYMVKIWNPDTEECLHAEL--QETEVELSHGYAL--RSRIVSG 199 (635)
Q Consensus 127 wd~~~~~~~~~l~~h~~~v~~l~~--~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~--~~~l~~~ 199 (635)
|++...+....+.+|...|++++| ++ ++|++++.||.|++||+.+++....+. .+...+..+.+.+ +..++++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 344566778899999999999999 66 899999999999999999888766554 3444444444443 5789999
Q ss_pred eCCCcEEEEECCCCeEEEEEeCCC---CCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeee
Q psy18018 200 SDDNTLKVWSATTGKCLRTLIGHT---GGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLI 276 (635)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (635)
+.|+.|++||+.+ ..+..+..|. ..|.+
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~------------------------------------------------ 168 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCC------------------------------------------------ 168 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEE------------------------------------------------
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEE------------------------------------------------
Confidence 9999999999875 4444444332 33333
Q ss_pred ccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE
Q psy18018 277 EPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV 356 (635)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 356 (635)
++++|++.+|
T Consensus 169 ----------------------------------------------------------------------~~~~~~~~~l 178 (383)
T 3ei3_B 169 ----------------------------------------------------------------------VDVSVSRQML 178 (383)
T ss_dssp ----------------------------------------------------------------------EEEETTTTEE
T ss_pred ----------------------------------------------------------------------EEECCCCCEE
Confidence 3478888899
Q ss_pred EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC--C-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe
Q psy18018 357 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS 433 (635)
Q Consensus 357 ~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~ 433 (635)
++|+.|+.|++||+ +++.+..+..|...|.+++|++ . ++++++.|+.|++||+.+.+.
T Consensus 179 ~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------ 239 (383)
T 3ei3_B 179 ATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD------------------ 239 (383)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS------------------
T ss_pred EEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc------------------
Confidence 99999999999998 5778888999999999999873 2 455555555555544443210
Q ss_pred CCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCC----ccc-------
Q psy18018 434 LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRN----KHQ------- 499 (635)
Q Consensus 434 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~------- 499 (635)
.+..+..+ +|...|.++.+++ ++|++++.|+.|++||+.+++....+..+. .|.
T Consensus 240 -----------~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (383)
T 3ei3_B 240 -----------KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATW 307 (383)
T ss_dssp -----------TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEE
T ss_pred -----------ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEec
Confidence 04445555 6889999999855 799999999999999999888766665421 111
Q ss_pred ---ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018 500 ---SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574 (635)
Q Consensus 500 ---~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v 574 (635)
..+..+++ ++++ +++.|+.|++||+.+++.+..+..+ .+...+.+++|+|++++|++++ |+.|
T Consensus 308 ~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~~g~~l~s~s-d~~i 375 (383)
T 3ei3_B 308 HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSPTGDVLASGM-GFNI 375 (383)
T ss_dssp CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT---------TBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC---------CCCceEEEEEEecCccEEEEec-CCcE
Confidence 23334444 4555 7789999999999999987776542 1356677789999999999997 9999
Q ss_pred EEEeCCC
Q psy18018 575 KLWDVKT 581 (635)
Q Consensus 575 ~iwd~~~ 581 (635)
+|||+++
T Consensus 376 ~iw~~~~ 382 (383)
T 3ei3_B 376 LIWNRED 382 (383)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9999874
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-33 Score=274.24 Aligned_cols=252 Identities=14% Similarity=0.234 Sum_probs=199.1
Q ss_pred CCCceEEEEec----CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCccee
Q psy18018 342 HVPDLFGFQFD----GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKL 417 (635)
Q Consensus 342 ~~~~~~~~s~~----~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 417 (635)
.....++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------------ 125 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------------ 125 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------------
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------------
Confidence 34556789998 67999999999999999999999999999999999999862
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee---ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 492 (635)
.++.+|++++.|+.|++||+.+++....+ .+|...|.++.++ ++++++++.||.|++||+.+++....+
T Consensus 126 ------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 126 ------RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp ------SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred ------CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 05566777777778888888888877777 6899999999985 669999999999999999977654332
Q ss_pred cC-------------------------CCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecccee---cCce
Q psy18018 493 SG-------------------------RNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI---LNPF 544 (635)
Q Consensus 493 ~~-------------------------~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~ 544 (635)
.. ...|...|.+++|+++++++++.|+.|++||+.+++.......... ....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 21 1127888999999999999999999999999988754211111000 0112
Q ss_pred eEEeccCceecccccCC--CeEEEEecCCCeEEEEeCCCCceE----EeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018 545 YFLIYSQPLLCPHLQFN--SRFVITSSDDGTVKLWDVKTGEFI----RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN 618 (635)
Q Consensus 545 ~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d 618 (635)
....|...|++++|+|+ +++|++++.||.|++||+.+++.+ ..+. ...+...|++++|+|++++|++++.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT---HHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc---ccccCCceEEEEeCCCCCeEEEEeCC
Confidence 23447788999999999 999999999999999999988643 2442 12237899999999999999999999
Q ss_pred CeeEeEEEEEee
Q psy18018 619 GTEETKLLVLDF 630 (635)
Q Consensus 619 g~~~~~l~~~d~ 630 (635)
|. |..||+
T Consensus 357 g~----i~iwd~ 364 (366)
T 3k26_A 357 AS----IWRWDR 364 (366)
T ss_dssp SE----EEEEEC
T ss_pred CE----EEEEEe
Confidence 98 555554
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.2e-33 Score=272.17 Aligned_cols=225 Identities=19% Similarity=0.383 Sum_probs=182.8
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce----------eE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK----------LM 418 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~ 418 (635)
|+|+|++|++|+.||.|++||+.+++.+..+.+|...+.++++++..+++++.|+.+++||....... ..
T Consensus 155 fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 155 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 67777888888888888888888888888888888888888888888888888888888887654332 22
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCCc----eeeeeccCCccEEEEEec---CCEEEE--EeCCCcEEEEECCCCcee
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESGN----LRHTLMGHQSLTSGMELR---NNILVS--GNADSTVKVWDIVSGQCL 489 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s--~~~dg~i~iwd~~~~~~~ 489 (635)
...+.++++++++++.|+.+++|+..+++ .+.....|...|.++.+. +.++++ |+.|++|++||+.++++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 33467899999999999999999998764 356677899999999984 346665 457999999999999999
Q ss_pred EEecCCCcccccEEEEEe--cCCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018 490 QTLSGRNKHQSAVTCLQF--NSRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 565 (635)
..+.. ...+.++.+ +++.+++++ .|+.|++||+.+++.+..+.+ |...|++++|+|||++|
T Consensus 315 ~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-----------H~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 315 SAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATV 379 (420)
T ss_dssp EEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCE
T ss_pred eeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEE
Confidence 88874 455677777 577777655 799999999999998877765 78899999999999999
Q ss_pred EEecCCCeEEEEeCCCCceEEee
Q psy18018 566 ITSSDDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 566 ~~~~~d~~v~iwd~~~~~~~~~~ 588 (635)
++|+.|++|+|||+.+....+..
T Consensus 380 ~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 380 ASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEEETTTEEEEECCSCSSCC---
T ss_pred EEEecCCeEEEEECCCCCccchh
Confidence 99999999999999876655444
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-34 Score=283.80 Aligned_cols=308 Identities=13% Similarity=0.134 Sum_probs=204.8
Q ss_pred CCCCCceeeccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce
Q psy18018 69 PIKDPKVLKGHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV 145 (635)
Q Consensus 69 ~~~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v 145 (635)
..+......+|..+| +||+|+ +++||+|+.||.|+|||+.+++ ......+.+|.++|
T Consensus 108 ~~~~~~~~~~~~~~V-~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-------------------~~~~~~~~gH~~~V 167 (435)
T 4e54_B 108 SYRILQKAAPFDRRA-TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-------------------KPTFIKGIGAGGSI 167 (435)
T ss_dssp TTTSCCEEEECSSCE-EEEEECSSCTTCEEEEETTSCEEEECSSCCS-------------------CCEEECCCSSSCCC
T ss_pred ceeecccCCCCCCCE-EEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-------------------ceeEEEccCCCCCE
Confidence 445556778898888 999998 6799999999999999987553 23345567999999
Q ss_pred EEEEe---cCCEEEEEeCCCeEEEEeCCCccceeeccccc---eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy18018 146 RCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQET---EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL 219 (635)
Q Consensus 146 ~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 219 (635)
++|+| ++++|++++.||+|++||++++........+. .+......+++.+|++|+.||.|++||+. ++.+..+
T Consensus 168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~ 246 (435)
T 4e54_B 168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNL 246 (435)
T ss_dssp CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCS
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEE
Confidence 99999 68899999999999999998765433222221 12223344567889999999999999985 4566778
Q ss_pred eCCCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018 220 IGHTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV 296 (635)
Q Consensus 220 ~~h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (635)
.+|...|.+++|+ ..++++++.|+.|++||
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd----------------------------------------------- 279 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWD----------------------------------------------- 279 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE-----------------------------------------------
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEe-----------------------------------------------
Confidence 8898888888763 12444555555555554
Q ss_pred EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceE
Q psy18018 297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLR 376 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~ 376 (635)
+.+.+..
T Consensus 280 -------------------------------------------------------------------------~~~~~~~ 286 (435)
T 4e54_B 280 -------------------------------------------------------------------------LRQVRGK 286 (435)
T ss_dssp -------------------------------------------------------------------------TTTCCSS
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 4433221
Q ss_pred ---EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec
Q psy18018 377 ---HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 453 (635)
Q Consensus 377 ---~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 453 (635)
....+|...|.+++|+ |++++|++++.|+.|++||+.++.....+.
T Consensus 287 ~~~~~~~~h~~~v~~~~~s-------------------------------pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 287 ASFLYSLPHRHPVNAACFS-------------------------------PDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp SCCSBCCBCSSCEEECCBC-------------------------------TTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred ceEEEeeeccccccceeEC-------------------------------CCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 1234677888888775 566677777777778888877777766666
Q ss_pred cCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCc
Q psy18018 454 GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 454 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~ 530 (635)
.|...... . ...+..... ....+..+.+ ++..++ ++..++.|++||..+++
T Consensus 336 ~~~~~~~~---------------~--------~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 336 PHPHRHFQ---------------H--------LTPIKAAWH---PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp CCCCCCCS---------------S--------SCCCBCEEC---SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred cccccccc---------------c--------ceeEEEEEc---CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 65432100 0 000000000 1111122222 343333 34455789999999998
Q ss_pred eeeeeccceecCceeEEeccCceecc-cccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018 531 FSTPLMSSFILNPFYFLIYSQPLLCP-HLQFNSRFVITSSDDGTVKLWDVKTGEFI 585 (635)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~v~iwd~~~~~~~ 585 (635)
.+..+... |...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 390 ~~~~l~~~----------~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 390 MMCQLYDP----------ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEEECCS----------SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEEeCC----------CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 87766432 67788887 6999999999886 789999999998754
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-32 Score=268.54 Aligned_cols=292 Identities=21% Similarity=0.355 Sum_probs=229.4
Q ss_pred EEEeeCCCcc--eEEEEecCCEEEEEeCCCeEEEEeCCCccceeeccc--cceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018 135 LHVLVGHLAA--VRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSA 210 (635)
Q Consensus 135 ~~~l~~h~~~--v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 210 (635)
+....+|... +.++.|++..+++++.|+.|++||+.+++....... ...+......+++.+|++++.||.|++||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3344466654 556777778899999999999999999987766554 344555555667889999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecccc
Q psy18018 211 TTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPR 290 (635)
Q Consensus 211 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (635)
.+++.+..+.+|...|.++.|+++.+++++.||.|++||+..
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------------------- 205 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI-------------------------------------- 205 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS--------------------------------------
T ss_pred cCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEeccc--------------------------------------
Confidence 999999999999999999998777777777777777776432
Q ss_pred ceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEc
Q psy18018 291 ELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEA 370 (635)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~ 370 (635)
T Consensus 206 -------------------------------------------------------------------------------- 205 (401)
T 4aez_A 206 -------------------------------------------------------------------------------- 205 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee
Q psy18018 371 ESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH 450 (635)
Q Consensus 371 ~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 450 (635)
.+..+..+.+|...|.+++|+ |++++|++++.|+.|++||+.+++...
T Consensus 206 -~~~~~~~~~~~~~~v~~~~~~-------------------------------~~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 206 -ANHQIGTLQGHSSEVCGLAWR-------------------------------SDGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp -SSCEEEEEECCSSCEEEEEEC-------------------------------TTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred -CcceeeEEcCCCCCeeEEEEc-------------------------------CCCCEEEEEeCCCeEEEccCCCCCccE
Confidence 123345567788888888875 566677777788888888888888888
Q ss_pred eeccCCccEEEEEecC---CEEEEEe--CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEE--EeCCCcE
Q psy18018 451 TLMGHQSLTSGMELRN---NILVSGN--ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT--SSDDGTV 521 (635)
Q Consensus 451 ~~~~~~~~v~~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~d~~i 521 (635)
.+..|...|.++++++ .++++++ .|+.|++||+.+++.+..+. +...+.+++| +++++++ |+.||.|
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i 329 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNL 329 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcE
Confidence 8999999999999964 4777765 79999999999999988886 5678999999 6889988 4489999
Q ss_pred EEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018 522 KLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 522 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
++||+.+++...... ...|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 330 ~v~~~~~~~~~~~~~---------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 330 SIWSYSSSGLTKQVD---------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEETTEEEEEEE---------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEEecCCccceeEEE---------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 999999876544322 22478899999999999999999999999999999998877653
No 76
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.7e-33 Score=271.04 Aligned_cols=305 Identities=11% Similarity=0.148 Sum_probs=208.0
Q ss_pred eeeecCCCCCCceeeccCcceEEEEEEc--C-CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018 63 INWRTRPIKDPKVLKGHDDHVITCLQFS--G-SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV 139 (635)
Q Consensus 63 ~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~-~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~ 139 (635)
.+|+..+.+..+.+.+|.+.| ++++|+ + ++||+|+.|+.|++||+.+++. .....+.
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------------~~~~~~~ 115 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRV-TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-------------------TSFIQGM 115 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCE-EEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-------------------EEEECCC
T ss_pred ccccccccceEEeccCCCCCE-EEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-------------------ceeeecC
Confidence 347778888888999999988 999999 6 8999999999999999875532 1222334
Q ss_pred CCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceeecccc----ceeEEeeeccCCCEEEEEeCCCcEEEEECCC
Q psy18018 140 GHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQE----TEVELSHGYALRSRIVSGSDDNTLKVWSATT 212 (635)
Q Consensus 140 ~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 212 (635)
+|...|.+++| ++++|++++.|+.|++||+.+.. +..+... ..+......+++..+++++.|+.|++||+ +
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~ 193 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-D 193 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-T
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-C
Confidence 79999999999 46899999999999999999643 3333222 33555566677889999999999999998 6
Q ss_pred CeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccce
Q psy18018 213 GKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPREL 292 (635)
Q Consensus 213 ~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (635)
++++..+.+|...|.+++|+
T Consensus 194 ~~~~~~~~~h~~~v~~~~~~------------------------------------------------------------ 213 (383)
T 3ei3_B 194 GHEIFKEKLHKAKVTHAEFN------------------------------------------------------------ 213 (383)
T ss_dssp SCEEEEEECSSSCEEEEEEC------------------------------------------------------------
T ss_pred CCEEEEeccCCCcEEEEEEC------------------------------------------------------------
Confidence 78888999999999888863
Q ss_pred eeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc-EEEEecCCCeEEEEEcc
Q psy18018 293 ALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV-HVVSGSLDTSIRVWEAE 371 (635)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~v~~~~ 371 (635)
|++. ++++++.|+.|++||+.
T Consensus 214 ----------------------------------------------------------~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 214 ----------------------------------------------------------PRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp ----------------------------------------------------------SSCTTEEEEEETTSEEEEEEGG
T ss_pred ----------------------------------------------------------CCCCCEEEEEeCCCEEEEEeCC
Confidence 3333 34444444444444444
Q ss_pred C----CceEEeeeCCCcceeEEEEeC---CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCC
Q psy18018 372 S----GNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAE 444 (635)
Q Consensus 372 ~----~~~~~~~~~~~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~ 444 (635)
+ +..+..+ +|...|.+++|++ .+|++++.|+.|++||+.+++........... .+. .
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~-~ 299 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR--------------QFQ-H 299 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC--------------CCT-T
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc--------------ccc-c
Confidence 3 3344444 5888899998864 46666666666666666554433221110000 000 0
Q ss_pred CCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCc
Q psy18018 445 SGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT 520 (635)
Q Consensus 445 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 520 (635)
.......+. ....+..+.+ ++.+ +++.|+.|++||+.+++.+..+..+. +...+.+++| ++++|++++ |+.
T Consensus 300 ~~~~~~~~~-p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 300 LTPIKATWH-PMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp SCCCCCEEC-SSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccceEEecc-CCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-CCc
Confidence 000000010 1123333433 4445 78899999999999999999887522 4566777677 689999997 999
Q ss_pred EEEEECCC
Q psy18018 521 VKLWDVKT 528 (635)
Q Consensus 521 i~vwd~~~ 528 (635)
|++||+++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999874
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=272.04 Aligned_cols=335 Identities=18% Similarity=0.188 Sum_probs=221.0
Q ss_pred eeecCCCCCCccccccccceEEEEEecCCCCC-CCceeecCCcchheeeccceeeeeeecCCCCCCceee----------
Q psy18018 9 NWRTRPIKDPKVLKGHDDHVITCLQFSGKSFP-CESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLK---------- 77 (635)
Q Consensus 9 ~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~-~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~---------- 77 (635)
.|+.+..+....+.+|.+.| +|++|+ | ++++||+++.++. +.+||..+++....+.
T Consensus 27 v~~~~~~~~~~~~~~h~~~v-~~~~~s----~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGI-NTLDIE----PVEGRYMLSGGSDGV--------IVLYDLENSSRQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHTEEECTTEEECCCCSSCE-EEEEEC----TTTCCEEEEEETTSC--------EEEEECCCCSSSSCEEECEEEEECTT
T ss_pred eeccccCcceeeeeccCCcE-EEEEEe----cCCCCEEEEEcCCCe--------EEEEECCCCcccceEecccccccccc
Confidence 45555666778899999999 999999 8 9999999986544 4469999998887765
Q ss_pred ---ccCcceEEEEEEc---CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe-
Q psy18018 78 ---GHDDHVITCLQFS---GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY- 150 (635)
Q Consensus 78 ---~h~~~vi~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~- 150 (635)
+|...+ .+++|+ +++|++++.|+.|++||+.++ +....+. +...+.++.+
T Consensus 94 ~~~~~~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------------~~~~~~~-~~~~~~~~~~~ 150 (408)
T 4a11_B 94 HPDVHRYSV-ETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---------------------QTADVFN-FEETVYSHHMS 150 (408)
T ss_dssp CTTCCSSCE-EEEEECTTCTTCEEEEETTSEEEEEETTTT---------------------EEEEEEE-CSSCEEEEEEC
T ss_pred ccccCCCcE-EEEEEccCCCcEEEEEeCCCeEEEeeCCCC---------------------ccceecc-CCCceeeeEee
Confidence 688888 999998 678999999998888887754 4444443 6778888888
Q ss_pred ----cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeecc-CCC-EEEEEeCCCcEEEEECCCCe-EEEEE----
Q psy18018 151 ----DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRS-RIVSGSDDNTLKVWSATTGK-CLRTL---- 219 (635)
Q Consensus 151 ----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~---- 219 (635)
++.++++++.||.|++||+.+++.+..+..+........+. .+. .+++++.||.|++||+.++. ++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred cCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 45599999999999999999999888887665555555544 445 58899999999999998765 44444
Q ss_pred -----------eCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceee
Q psy18018 220 -----------IGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFIS 286 (635)
Q Consensus 220 -----------~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (635)
.+|...|.+++|+ +++|++++.||.|++||+.+...........
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------------------- 287 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV----------------------- 287 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC-----------------------
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc-----------------------
Confidence 5789999999994 7899999999999999988754211100000
Q ss_pred ccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEE
Q psy18018 287 LLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIR 366 (635)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~ 366 (635)
................+..+++++.++.|+
T Consensus 288 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 288 --------------------------------------------------CNNSKKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp --------------------------------------------------CCCCSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred --------------------------------------------------cccccccceeEEecCCCceEEEEecCCEEE
Confidence 000000111111222455677778899999
Q ss_pred EEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCC
Q psy18018 367 VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG 446 (635)
Q Consensus 367 v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 446 (635)
+||+.+++.+..+.+|...|.+++|+ |++++|++++.||.|++||+.++
T Consensus 318 v~d~~~~~~~~~~~~~~~~v~~~~~s-------------------------------~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 318 VYTVYSGEQITMLKGHYKTVDCCVFQ-------------------------------SNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE-------------------------------TTTTEEEEEETTSCEEEEEECC-
T ss_pred EEECcCCcceeeeccCCCeEEEEEEc-------------------------------CCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999987 34445555555555555555555
Q ss_pred ceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECC
Q psy18018 447 NLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIV 484 (635)
Q Consensus 447 ~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~ 484 (635)
+.+.....+.... .+.. ....+.+.+.++.+++|+..
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 367 EPVPDDDETTTKS-QLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ---------------------------------------
T ss_pred CccCCCCceEecc-ccccccceeecccCccCceeecCCc
Confidence 5444333222211 1222 33455567778888888754
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6e-33 Score=269.61 Aligned_cols=313 Identities=18% Similarity=0.171 Sum_probs=227.0
Q ss_pred cccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc--CCEEE
Q psy18018 20 VLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS--GSRIV 95 (635)
Q Consensus 20 ~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s--~~~l~ 95 (635)
.+..|.++| ++++|+ |+|++||+++.++ .+.+||..+++ .+..+.+|.+.+ .+++|+ +++|+
T Consensus 3 ~~~~~~~~i-~~~~~s----~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~ 68 (372)
T 1k8k_C 3 YHSFLVEPI-SCHAWN----KDRTQIAICPNNH--------EVHIYEKSGNKWVQVHELKEHNGQV-TGVDWAPDSNRIV 68 (372)
T ss_dssp EEESCSSCC-CEEEEC----TTSSEEEEECSSS--------EEEEEEEETTEEEEEEEEECCSSCE-EEEEEETTTTEEE
T ss_pred eecccCCCe-EEEEEC----CCCCEEEEEeCCC--------EEEEEeCCCCcEEeeeeecCCCCcc-cEEEEeCCCCEEE
Confidence 456799998 999999 9999999997644 44569999987 889999999988 999999 89999
Q ss_pred EeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc
Q psy18018 96 SGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE 173 (635)
Q Consensus 96 s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~ 173 (635)
+++.|+.|++||+.+++. .....+..|...|.+++| ++++|++++.||.|++||+..++
T Consensus 69 ~~~~dg~i~vwd~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 69 TCGTDRNAYVWTLKGRTW-------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp EEETTSCEEEEEEETTEE-------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred EEcCCCeEEEEECCCCee-------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 999999999998865431 223345689999999999 89999999999999999998876
Q ss_pred c---eeec-cc-cceeEEeeeccCCCEEEEEeCCCcEEEEECC------------------CCeEEEEEeCCCCCeEEEE
Q psy18018 174 C---LHAE-LQ-ETEVELSHGYALRSRIVSGSDDNTLKVWSAT------------------TGKCLRTLIGHTGGVWSSQ 230 (635)
Q Consensus 174 ~---~~~~-~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~h~~~v~~~~ 230 (635)
. .... .. ...+......+.+.++++++.||.|++||+. .++++..+.+|...|.+
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 207 (372)
T 1k8k_C 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG-- 207 (372)
T ss_dssp TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE--
T ss_pred cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE--
Confidence 3 2222 22 2344445555667788888899999999964 33444444444444433
Q ss_pred eeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcc
Q psy18018 231 MAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQ 310 (635)
Q Consensus 231 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (635)
T Consensus 208 -------------------------------------------------------------------------------- 207 (372)
T 1k8k_C 208 -------------------------------------------------------------------------------- 207 (372)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018 311 TCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 390 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~ 390 (635)
++|+|++.+|++++.||.|++||+.+++.+..+..|...+.+++
T Consensus 208 ------------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 251 (372)
T 1k8k_C 208 ------------------------------------VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT 251 (372)
T ss_dssp ------------------------------------EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred ------------------------------------EEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence 44778888899999999999999999999999999999999999
Q ss_pred Ee-CCEEEEEeCCCcEEEEEccC--CcceeEEEEEeeCCcEEEEEeCCCcEEEE---eCCCCcee------eee-ccCCc
Q psy18018 391 LR-NNILVSGNADSTVKVWDIVS--GTKKLMFRICLFDGVHVVSGSLDTSIRVW---EAESGNLR------HTL-MGHQS 457 (635)
Q Consensus 391 ~~-~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~---d~~~~~~~------~~~-~~~~~ 457 (635)
|+ ...+++++.|+.+++|++.. +....... .+...-........+.+| +.. +... ..+ .+|..
T Consensus 252 ~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~ 327 (372)
T 1k8k_C 252 FITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR---LDVPKQSSQRGLTARERFQNLDKK-ASSEGSAAAGAGLDSLHKN 327 (372)
T ss_dssp EEETTEEEEEETTSSCEEEEEETTTTEEEECCC---CCCC--------CHHHHHHHCCCC-C---------CCCSSSSSS
T ss_pred EecCCCEEEEEeCCeEEEEEccCcCceEEEeec---cCccccchhhhcchhhhhhhcccc-cccccCccccccccccccC
Confidence 97 33444444999999999987 32111100 011111111223334445 422 2222 333 48999
Q ss_pred cEEEEEe---cC---CEEEEEeCCCcEEEEECCCCc
Q psy18018 458 LTSGMEL---RN---NILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 458 ~v~~~~~---~~---~~l~s~~~dg~i~iwd~~~~~ 487 (635)
.|.++++ ++ ++|++++.||.|++||+.+++
T Consensus 328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999985 34 799999999999999987654
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-32 Score=265.51 Aligned_cols=231 Identities=19% Similarity=0.295 Sum_probs=192.3
Q ss_pred EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+++.+++++.||.|++||+..
T Consensus 140 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~-------------- 205 (401)
T 4aez_A 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI-------------- 205 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS--------------
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEeccc--------------
Confidence 447888889999999999999999999999999999999999999877777777666666665542
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018 427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC 504 (635)
Q Consensus 427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 504 (635)
.......+.+|...|.++.++ ++++++++.|+.|++||+.+++.+..+.. |...|.+
T Consensus 206 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~ 264 (401)
T 4aez_A 206 ------------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKA 264 (401)
T ss_dssp ------------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC---CSSCCCE
T ss_pred ------------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC---CcceEEE
Confidence 234566778899999999984 66999999999999999999999888876 8889999
Q ss_pred EEec---CCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE--ecCCCeEEEE
Q psy18018 505 LQFN---SRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT--SSDDGTVKLW 577 (635)
Q Consensus 505 ~~~~---~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~v~iw 577 (635)
++|+ ..++++++ .|+.|++||+.+++....+. +...|.+++|+|+++++++ |+.||.|++|
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 9993 46777765 79999999999988766553 4668999999999999999 5589999999
Q ss_pred eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
|+.+++....... .+|...|.+++|+|||++|++++.||. |..||+.
T Consensus 333 ~~~~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~----i~iw~~~ 379 (401)
T 4aez_A 333 SYSSSGLTKQVDI---PAHDTRVLYSALSPDGRILSTAASDEN----LKFWRVY 379 (401)
T ss_dssp EEETTEEEEEEEE---ECCSSCCCEEEECTTSSEEEEECTTSE----EEEEECC
T ss_pred ecCCccceeEEEe---cCCCCCEEEEEECCCCCEEEEEeCCCc----EEEEECC
Confidence 9999776655422 478899999999999999999999998 4445544
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-32 Score=259.45 Aligned_cols=272 Identities=11% Similarity=0.143 Sum_probs=213.2
Q ss_pred cCCCceEEEEecCcEEEEecCCC-------eEEEEEccCCce----------EEeeeCCCcceeEEEEeCCEEEEEe---
Q psy18018 341 THVPDLFGFQFDGVHVVSGSLDT-------SIRVWEAESGNL----------RHTLMGHQSLTSGMELRNNILVSGN--- 400 (635)
Q Consensus 341 ~~~~~~~~~s~~~~~l~~~~~dg-------~i~v~~~~~~~~----------~~~~~~~~~~v~~l~~~~~~l~s~~--- 400 (635)
+.+..+++|+||+++|++|+.+. .|++|++..+.. ...+..|...+.+++++++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 34567889999999999987543 599999875431 1346688889999999988888764
Q ss_pred --------CCCcEEEEEccCCcce------------------eEEEEEeeCCcEEEEEe--CCCcEEEEeCCCCceeeee
Q psy18018 401 --------ADSTVKVWDIVSGTKK------------------LMFRICLFDGVHVVSGS--LDTSIRVWEAESGNLRHTL 452 (635)
Q Consensus 401 --------~dg~i~iwd~~~~~~~------------------~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~ 452 (635)
.|+.+++|++...... .....++|||+++++++ .|++|++||+++++.+..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 4778999998765322 22345899999987554 7899999999999998888
Q ss_pred ccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC----cEEEE
Q psy18018 453 MGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG----TVKLW 524 (635)
Q Consensus 453 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~i~vw 524 (635)
. |...|.+++|+ ++++++++.+ .+.+|+..+++.+..... ..|...|.+++| +++++++++.|+ .+++|
T Consensus 174 ~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 E-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD-FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp E-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC-CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred C-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec-CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 6 77789988884 6688888755 577777777776554332 237788999988 789999999887 68889
Q ss_pred ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018 525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR 604 (635)
Q Consensus 525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 604 (635)
++.......... .....|...|++++|||||++||+|+.|++|+|||+++++++..+. .+|..+|++|+
T Consensus 251 ~~~~~~~~~~~~-------~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----~gH~~~V~~v~ 319 (365)
T 4h5i_A 251 SIKSGNTSVLRS-------KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK----QAHSFAITEVT 319 (365)
T ss_dssp EEETTEEEEEEE-------EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET----TSSSSCEEEEE
T ss_pred ccccceecceee-------eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec----CcccCCEEEEE
Confidence 987665322111 1223467889999999999999999999999999999999998763 58999999999
Q ss_pred eCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 605 ASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 605 ~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
|||||++||+|+.|++ ++||.+
T Consensus 320 fSpdg~~laS~S~D~t--vrvw~i 341 (365)
T 4h5i_A 320 ISPDSTYVASVSAANT--IHIIKL 341 (365)
T ss_dssp ECTTSCEEEEEETTSE--EEEEEC
T ss_pred ECCCCCEEEEEeCCCe--EEEEEc
Confidence 9999999999999999 566554
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=266.19 Aligned_cols=310 Identities=16% Similarity=0.195 Sum_probs=228.1
Q ss_pred EEEeeCCCcceEEEEe--cCCE-EEEEeC---CCeEEEEeCCCccceeecc-cc-ceeEEeeeccC---CCEEEEEeCCC
Q psy18018 135 LHVLVGHLAAVRCVQY--DGKL-VVSGAY---DYMVKIWNPDTEECLHAEL-QE-TEVELSHGYAL---RSRIVSGSDDN 203 (635)
Q Consensus 135 ~~~l~~h~~~v~~l~~--~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~---~~~l~~~~~dg 203 (635)
...+.+|...|.+++| ++.. +++++. ||.|++||+.+++...... .+ ..+....+.+. +..+++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 3456789999999999 6654 456665 9999999999887654322 33 34444444444 48999999999
Q ss_pred cEEEEECCCCe-EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccc
Q psy18018 204 TLKVWSATTGK-CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQR 282 (635)
Q Consensus 204 ~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (635)
.|++||+.+++ ++..+.+|...|.++.+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------------------ 122 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG------------------------------------------------ 122 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESG------------------------------------------------
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccc------------------------------------------------
Confidence 99999999988 88899999999998864210
Q ss_pred ceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC
Q psy18018 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD 362 (635)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 362 (635)
++++|++++|++++.|
T Consensus 123 ----------------------------------------------------------------~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 123 ----------------------------------------------------------------LGIGEGAPEIVTGSRD 138 (357)
T ss_dssp ----------------------------------------------------------------GGCC-CCCEEEEEETT
T ss_pred ----------------------------------------------------------------cccCCCccEEEEEeCC
Confidence 1267788888888888
Q ss_pred CeEEEEEccCCc-eEEeeeCCCc----ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc
Q psy18018 363 TSIRVWEAESGN-LRHTLMGHQS----LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS 437 (635)
Q Consensus 363 g~i~v~~~~~~~-~~~~~~~~~~----~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 437 (635)
|.|++||+.+++ .+..+..|.. .+.++++.. .++++++++++++.|+.
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN---------------------------AYNQEERVVCAGYDNGD 191 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC---------------------------CCC-CCCEEEEEETTSE
T ss_pred CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe---------------------------ccCCCCCEEEEEccCCe
Confidence 888999888776 5666655544 555555421 13467888888888899
Q ss_pred EEEEeCCCCceeeeeccCCccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceeEEec--CCCcccccEEEEEec--
Q psy18018 438 IRVWEAESGNLRHTLMGHQSLTSGMELR-----NNILVSGNADSTVKVWDIVSGQCLQTLS--GRNKHQSAVTCLQFN-- 508 (635)
Q Consensus 438 i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~-- 508 (635)
|++||+++++... ...|...+.++.++ ++++++++.||.|++||+++++....+. ....|...|.+++|+
T Consensus 192 i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 192 IKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT
T ss_pred EEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC
Confidence 9999998887644 45688899999985 4799999999999999998876655544 111288999999994
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceeeeeccce--------ecCceeEEeccCceecccccCCCeEEE-EecCCCeEEEEe
Q psy18018 509 SR-FVITSSDDGTVKLWDVKTGEFSTPLMSSF--------ILNPFYFLIYSQPLLCPHLQFNSRFVI-TSSDDGTVKLWD 578 (635)
Q Consensus 509 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~v~iwd 578 (635)
++ ++++++.||.|++||++++.......... .........|...|++++|+|++++|+ +++.|+.|++||
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 55 89999999999999998765432111100 001123445788999999999999998 899999999999
Q ss_pred CCCCce
Q psy18018 579 VKTGEF 584 (635)
Q Consensus 579 ~~~~~~ 584 (635)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987764
No 82
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-33 Score=273.76 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=213.6
Q ss_pred CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCce--EEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcc
Q psy18018 342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNL--RHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGTK 415 (635)
Q Consensus 342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~--~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~ 415 (635)
..+.+++|+| ++++||+|+.||.|++||+.+++. ...+.+|...|.+++|+ +++|++++.||+|++||+.+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 3466788998 577899999999999999987654 44567899999999996 56999999999999999976543
Q ss_pred eeE-----------EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEE
Q psy18018 416 KLM-----------FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVW 481 (635)
Q Consensus 416 ~~~-----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iw 481 (635)
... ...+++++++|++|+.||.|++||++ ++.+..+.+|...|.++++++ .++++++.|+.|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iw 278 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEE
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEE
Confidence 221 12478899999999999999999986 566778899999999999953 389999999999999
Q ss_pred ECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018 482 DIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559 (635)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 559 (635)
|+++.+....+.....|...|++++| ++++|++++.||.|++||+.+++....+..+..... ....+....|+
T Consensus 279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 353 (435)
T 4e54_B 279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-----QHLTPIKAAWH 353 (435)
T ss_dssp ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-----SSSCCCBCEEC
T ss_pred ecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-----ccceeEEEEEc
Confidence 99987766655544558899999999 689999999999999999999887666544321110 01122334555
Q ss_pred CCCeEEEEec------------CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEE-EeCCCCeEEEEccCCCeeEeEEE
Q psy18018 560 FNSRFVITSS------------DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRI-RASETKLVCAVGSRNGTEETKLL 626 (635)
Q Consensus 560 ~~~~~l~~~~------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l-~~s~d~~~l~~~~~dg~~~~~l~ 626 (635)
|++.+++++. .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |+. ++||
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~----~~~~~~v~s~~~fspdg~~lasg~-d~~--i~iW 426 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY----DPESSGISSLNEFNPMGDTLASAM-GYH--ILIW 426 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC----CSSCCCCCCEEEECTTSSCEEEEC-SSE--EEEC
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe----CCCCCcEEEEEEECCCCCEEEEEc-CCc--EEEE
Confidence 5555555543 34689999999999988874 4677888887 6999999999887 665 4444
Q ss_pred E
Q psy18018 627 V 627 (635)
Q Consensus 627 ~ 627 (635)
.
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 3
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-31 Score=251.02 Aligned_cols=220 Identities=19% Similarity=0.375 Sum_probs=165.2
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcce----------eE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKK----------LM 418 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~----------~~ 418 (635)
|+|+++++++|+.||.|++|++.+++.+..+.+|...+.++.+.+..+++++.++.+++|+....... ..
T Consensus 75 ~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154 (318)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence 55566666666666666666666666666666777777666666777777777777777766554322 22
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCCce----eeeeccCCccEEEEEec---CCE--EEEEeCCCcEEEEECCCCcee
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR---NNI--LVSGNADSTVKVWDIVSGQCL 489 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~---~~~--l~s~~~dg~i~iwd~~~~~~~ 489 (635)
...+.++++++++++.|+.|++||+.+++. ......+...|.++.+. ++. +++++.++.|++||.......
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 234667888999999999999999887653 34556678888888874 333 456778899999999988877
Q ss_pred EEecCCCcccccEEEEEe--cCCEEEEEe--CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018 490 QTLSGRNKHQSAVTCLQF--NSRFVITSS--DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 565 (635)
.... +...+..+.+ +++.+++++ .|+.|++||+++++.+..+.. |...|++++|+||+++|
T Consensus 235 ~~~~----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----------H~~~V~~l~~spdg~~l 299 (318)
T 4ggc_A 235 SAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSPDGATV 299 (318)
T ss_dssp EEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECTTSSCE
T ss_pred cccc----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcCCCCEE
Confidence 7665 5566777777 566666544 799999999999998887765 78899999999999999
Q ss_pred EEecCCCeEEEEeCCCCc
Q psy18018 566 ITSSDDGTVKLWDVKTGE 583 (635)
Q Consensus 566 ~~~~~d~~v~iwd~~~~~ 583 (635)
|+|+.||+|+|||+.+.+
T Consensus 300 ~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 300 ASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTEEEEECCSCCC
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999997653
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=274.56 Aligned_cols=313 Identities=11% Similarity=0.107 Sum_probs=231.6
Q ss_pred CcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE
Q psy18018 80 DDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV 155 (635)
Q Consensus 80 ~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l 155 (635)
.++| .+++|| |+++||++.|++|+ |.+.+ + .+++|...|.+++| +|
T Consensus 15 ~~~v-~sv~~SpDG~~iASas~D~TV~--d~~~~---------------------~---~l~gh~~~v~~V~FsPdg--- 64 (588)
T 2j04_A 15 EDWK-NNLTWARDGTLYLTTFPDISIG--QPKYA---------------------K---DINCNSKNLFHVKEFPLE--- 64 (588)
T ss_dssp SSSS-CCEEECTTSCEEEECSSSEEEE--EECCC---------------------S---CCSSBGGGTEEEEEECCC---
T ss_pred hccE-EEEEECCCCCEEEEEcCCceee--ccccc---------------------c---eecCCCccEEEEEECCCC---
Confidence 4667 899999 99999999999999 64433 2 23689999999999 55
Q ss_pred EEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCE
Q psy18018 156 VSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNI 235 (635)
Q Consensus 156 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 235 (635)
.++.+.+|+.+..+ ...+.+...+....+.+++.+|++++.||.|++||... ++..+. |..++.
T Consensus 65 ----~~~~~~~~~~~~~~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------- 128 (588)
T 2j04_A 65 ----FENKLDFELAQQNG-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------- 128 (588)
T ss_dssp ----CCCTTTTSCCCSSC-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST--------
T ss_pred ----CcceEEEEeCCCce-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc--------
Confidence 45555555544333 22333345566667777788999999999999999543 444444 443200
Q ss_pred EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccce
Q psy18018 236 IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSW 315 (635)
Q Consensus 236 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (635)
T Consensus 129 -------------------------------------------------------------------------------- 128 (588)
T 2j04_A 129 -------------------------------------------------------------------------------- 128 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce-------EEee----eCCCc
Q psy18018 316 RFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL-------RHTL----MGHQS 384 (635)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~-------~~~~----~~~~~ 384 (635)
......++|||||++|++|+.||.|++||+.++.. +..+ .+|..
T Consensus 129 -------------------------~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 129 -------------------------SRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp -------------------------TTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred -------------------------cccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc
Confidence 01122455899999999999999999999988752 5665 56778
Q ss_pred ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCce---eeee-ccCCccEE
Q psy18018 385 LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNL---RHTL-MGHQSLTS 460 (635)
Q Consensus 385 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~-~~~~~~v~ 460 (635)
.|.+++|+ |+| +++++.|+.+++||+.+++. .+++ .+|...|.
T Consensus 184 ~V~sVawS-------------------------------Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 184 WVTHIVWY-------------------------------EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp CEEEEEEE-------------------------------TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred cEEEEEEc-------------------------------CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99999987 344 55556666667777666553 3456 47888999
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018 461 GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSSDDGTVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 461 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 536 (635)
+++|.++.+++++ +++|++||+.+++......+ |...+..+++ ++..+++++.||+ ++|....
T Consensus 231 svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g---h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------- 297 (588)
T 2j04_A 231 DLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG---SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------- 297 (588)
T ss_dssp CEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS---CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------
T ss_pred EEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC---CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------
Confidence 9999888999997 69999999998776444435 8888998888 4668999999999 9999761
Q ss_pred cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018 537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS 616 (635)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~ 616 (635)
++++||+.++++. |+++++|+...++ +..+ .+ ...|.+++|||||+.||+++
T Consensus 298 -------------------~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~-----~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 -------------------LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNY-----ET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp -------------------EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSS-----CC-EEEEEEEEECTTSSEEEEEE
T ss_pred -------------------EEECCCceEEEEc--CCEEEEEECCCCc-eeee-----cc-ceEEEEEEECCCCCEEEEEE
Confidence 3478899888875 9999999986554 3333 23 67899999999999999886
Q ss_pred C
Q psy18018 617 R 617 (635)
Q Consensus 617 ~ 617 (635)
.
T Consensus 350 ~ 350 (588)
T 2j04_A 350 D 350 (588)
T ss_dssp E
T ss_pred e
Confidence 5
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.5e-32 Score=252.55 Aligned_cols=246 Identities=19% Similarity=0.243 Sum_probs=187.1
Q ss_pred cCCCceEEEEecCcEEEEecCCCeEEEEEccC--CceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAES--GNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~--~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
......++|+|+|++|++|+.|+.|++|++.. .+.+..+.+|...|.+++|++.
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~------------------------ 64 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------------ 64 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG------------------------
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC------------------------
Confidence 34456688999999999999999999999974 3677889999999999998520
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eE
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQ 490 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~ 490 (635)
.++++|++++.|++|++||+++++ .+..+.+|...|.+++++ +.+|++++.|+.|++||++++.. ..
T Consensus 65 -----~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 65 -----KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp -----GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred -----CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 123345555555555555555442 445677899999999985 56999999999999999987632 33
Q ss_pred EecCCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018 491 TLSGRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC 555 (635)
Q Consensus 491 ~~~~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 555 (635)
.+.. |...|.+++|+ +++|++|+.|++|++||+++++...... .....|...|.+
T Consensus 140 ~~~~---h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-------~~l~~H~~~V~~ 209 (297)
T 2pm7_B 140 IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-------STLEGHSDWVRD 209 (297)
T ss_dssp EEEC---CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-------EEECCCSSCEEE
T ss_pred eeec---ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-------EEecCCCCceEE
Confidence 4444 88899999994 3589999999999999998765221111 012247889999
Q ss_pred ccccCCC---eEEEEecCCCeEEEEeCCCCce--EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 556 PHLQFNS---RFVITSSDDGTVKLWDVKTGEF--IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 556 ~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
++|+|++ ++||+++.|++|+|||+.+++. .... +....+...|++++|+|+|++||+++.||. ++||..+
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~las~~~D~~--v~lw~~~ 284 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL--LKEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN 284 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE--SSSSCCSSCEEEEEECSSSCCEEEEETTSC--EEEEEEC
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee--eecccCCCcEEEEEECCCCCEEEEEcCCCc--EEEEEEC
Confidence 9999994 8999999999999999987531 1111 111357789999999999999999999998 6666554
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=263.74 Aligned_cols=246 Identities=15% Similarity=0.203 Sum_probs=195.7
Q ss_pred CCceEEEEec---CcEEEEecCCCeEEEEEccCCc-eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 343 VPDLFGFQFD---GVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 343 ~~~~~~~s~~---~~~l~~~~~dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
....++|+|+ +.++++|+.||.|++||+.+++ .+..+.+|...|.++.+.+..
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------- 123 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL----------------------- 123 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG-----------------------
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc-----------------------
Confidence 3455678887 6999999999999999999888 888899999999999764210
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeeeccCCc----cEEEEE------ecCCEEEEEeCCCcEEEEECCCCc
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQS----LTSGME------LRNNILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~----~v~~~~------~~~~~l~s~~~dg~i~iwd~~~~~ 487 (635)
.+++++++|++++.|+.|++||+.+++ ....+..|.. .+.++. .+++++++++.||.|++||+++++
T Consensus 124 --~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 124 --GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp --GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred --ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 124677778888888888888888776 6677766554 788777 367899999999999999999988
Q ss_pred eeEEecCCCcccccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018 488 CLQTLSGRNKHQSAVTCLQFN-----SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS 562 (635)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 562 (635)
...... |...|.+++|+ ++++++++.||.|++||+++++....+.. .....|...|++++|+|++
T Consensus 202 ~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 202 LRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS------VSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp EEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE------EEEECCSSCEEEEEEETTE
T ss_pred eeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee------eccCCCcCCEEEEEECCCC
Confidence 765543 77889999994 68999999999999999987664443321 1223578899999999999
Q ss_pred e-EEEEecCCCeEEEEeCCCCc-------------------eEEeeeeccCCCCCceEEEEEeCCCCeEEE-EccCCCee
Q psy18018 563 R-FVITSSDDGTVKLWDVKTGE-------------------FIRNLVSLDSGGSGGVVWRIRASETKLVCA-VGSRNGTE 621 (635)
Q Consensus 563 ~-~l~~~~~d~~v~iwd~~~~~-------------------~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~-~~~~dg~~ 621 (635)
+ +|++++.||.|++||+.++. .+..+ .+|..+|++++|+|++++|+ +++.||.
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~s~~~d~~- 345 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-----TLSTQPISSLDWSPDKRGLCVCSSFDQT- 345 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-----ECCSSCEEEEEECSSSTTEEEEEETTSE-
T ss_pred CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-----ccCCCCeeEEEEcCCCCeEEEEecCCCc-
Confidence 9 89999999999999998653 34444 46889999999999999998 7999998
Q ss_pred EeEEEEEeeec
Q psy18018 622 ETKLLVLDFDV 632 (635)
Q Consensus 622 ~~~l~~~d~~~ 632 (635)
+.+||++.
T Consensus 346 ---i~iw~~~~ 353 (357)
T 3i2n_A 346 ---VRVLIVTK 353 (357)
T ss_dssp ---EEEEEECC
T ss_pred ---EEEEECCC
Confidence 55555543
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-31 Score=260.85 Aligned_cols=271 Identities=18% Similarity=0.167 Sum_probs=224.8
Q ss_pred ccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--eEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc
Q psy18018 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK 415 (635)
Q Consensus 340 ~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~ 415 (635)
+......++|+|++++|++++.++.|++||+.+++ .+..+.+|...|.+++|+ +++|++++.|+.|++||+.+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 34567788999999999999999999999999887 888999999999999998 67999999999999999987753
Q ss_pred eeE-----------EEEEeeCCcEEEEEeCCCcEEEEeCCCCce----eeeeccCCccEEEEEec--CCEEEEEeCCCcE
Q psy18018 416 KLM-----------FRICLFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR--NNILVSGNADSTV 478 (635)
Q Consensus 416 ~~~-----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 478 (635)
... ...++|+++++++++.|+.+++||+..++. .....+|...+.++.++ ++++++++.||.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 322 234788999999999999999999988763 33346789999999984 5699999999999
Q ss_pred EEEEC------------------CCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccc
Q psy18018 479 KVWDI------------------VSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSS 538 (635)
Q Consensus 479 ~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 538 (635)
++||+ ..++.+..+.. |...|.+++| ++++|++++.|+.|++||+++++.+..+..
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~- 242 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS- 242 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-
T ss_pred EEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-
Confidence 99995 36677777776 8889999999 688999999999999999999987766654
Q ss_pred eecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC--CceEE--eee-------------------------
Q psy18018 539 FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT--GEFIR--NLV------------------------- 589 (635)
Q Consensus 539 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~--~~~~~--~~~------------------------- 589 (635)
|..+|.+++|+|++++|+++ .|+.|++||+.+ ++... .+.
T Consensus 243 ----------~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 243 ----------ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp ----------SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred ----------CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 57789999999999999988 899999999988 53110 000
Q ss_pred -------eccCCCCCceEEEEEeC-CCC---eEEEEccCCCeeEeEEEE
Q psy18018 590 -------SLDSGGSGGVVWRIRAS-ETK---LVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 590 -------~~~~~~~~~~i~~l~~s-~d~---~~l~~~~~dg~~~~~l~~ 627 (635)
.....+|..+|++++|. ++| .+|++++.||. +++|.
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--i~~W~ 358 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWD 358 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEE
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc--eEEEE
Confidence 01113789999999965 777 99999999998 44443
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-33 Score=270.25 Aligned_cols=331 Identities=14% Similarity=0.096 Sum_probs=207.6
Q ss_pred ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCC--CCCceeeccCcceEEEEEEc--CCEE
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPI--KDPKVLKGHDDHVITCLQFS--GSRI 94 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~--~~~~~l~~h~~~vi~~~~~s--~~~l 94 (635)
..++.|.++| +|++|+ |+|++||+++.++.+ .+||..++ +.+..+.+|.+.+ .+++|+ +++|
T Consensus 5 ~~~~~~~~~v-~~~~~s----~~g~~l~~~~~d~~i--------~iw~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l 70 (377)
T 3dwl_C 5 QVLHILPKPS-YEHAFN----SQRTEFVTTTATNQV--------ELYEQDGNGWKHARTFSDHDKIV-TCVDWAPKSNRI 70 (377)
T ss_dssp EEEEECSSCC-SCCEEC----SSSSEEECCCSSSCB--------CEEEEETTEEEECCCBCCCSSCE-EEEEECTTTCCE
T ss_pred eeEecCCCcE-EEEEEC----CCCCEEEEecCCCEE--------EEEEccCCceEEEEEEecCCceE-EEEEEeCCCCEE
Confidence 4456677888 999999 999999999865444 46999988 7889999999988 999999 8999
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc
Q psy18018 95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE 172 (635)
Q Consensus 95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~ 172 (635)
++++.|++|++||+.+++ ..++...+.+|...|.+++| ++++|++++.|+.|++||+.++
T Consensus 71 ~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDG------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp EEEETTSSEEEC------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred EEEeCCCeEEEEEcCCCC------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 999999999999987543 12356677899999999999 8999999999999999999988
Q ss_pred cc---eeeccc-cc-eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEE
Q psy18018 173 EC---LHAELQ-ET-EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKG 247 (635)
Q Consensus 173 ~~---~~~~~~-~~-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~ 247 (635)
+. ...+.. +. .+......+++.+|++++.|+.|++||+...+........ .
T Consensus 133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------~ 188 (377)
T 3dwl_C 133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS------------------------V 188 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC------------------------S
T ss_pred ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc------------------------c
Confidence 73 445544 33 3444445556678888999999999988643311100000 0
Q ss_pred ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE 327 (635)
Q Consensus 248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (635)
|......
T Consensus 189 ~~~~~~~------------------------------------------------------------------------- 195 (377)
T 3dwl_C 189 WGSRLPF------------------------------------------------------------------------- 195 (377)
T ss_dssp SCSCCCE-------------------------------------------------------------------------
T ss_pred cccccch-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce----EEeeeCCCcceeEEEEe--CCEEEEEeC
Q psy18018 328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL----RHTLMGHQSLTSGMELR--NNILVSGNA 401 (635)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----~~~~~~~~~~v~~l~~~--~~~l~s~~~ 401 (635)
........+......++|+|++++|++++.||.|++||+.+++. +..+.+|...|.+++|+ +.+|++++.
T Consensus 196 ----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 196 ----NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp ----EEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred ----hhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 00000001112234456888899999999999999999998877 78889999999999997 456766665
Q ss_pred CCcEEEEEccCCcceeEEEEEeeCCc---------------EEEE--EeCCCcEEEEeCCC--CceeeeeccCCccEEEE
Q psy18018 402 DSTVKVWDIVSGTKKLMFRICLFDGV---------------HVVS--GSLDTSIRVWEAES--GNLRHTLMGHQSLTSGM 462 (635)
Q Consensus 402 dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~l~~--~~~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~ 462 (635)
++ +.+|+............-.+... .-+. .......+..+... .........|...|+++
T Consensus 272 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~ 350 (377)
T 3dwl_C 272 YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATL 350 (377)
T ss_dssp SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEE
T ss_pred Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEE
Confidence 55 55776653221100000000000 0000 00001111111110 01222334699999999
Q ss_pred Eec---CC---EEEEEeCCCcEEEEEC
Q psy18018 463 ELR---NN---ILVSGNADSTVKVWDI 483 (635)
Q Consensus 463 ~~~---~~---~l~s~~~dg~i~iwd~ 483 (635)
.+. +. .+++++.||.|++||+
T Consensus 351 ~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 351 RPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred eccCCCCCceEEEEeecCCCcEEEecC
Confidence 863 23 6999999999999985
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-31 Score=250.17 Aligned_cols=198 Identities=21% Similarity=0.261 Sum_probs=142.8
Q ss_pred ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCC--CCCCceeeccCcceEEEEEEc----CC
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP--IKDPKVLKGHDDHVITCLQFS----GS 92 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~--~~~~~~l~~h~~~vi~~~~~s----~~ 92 (635)
..+.||.+.| ++++|+ |+|++||+++.++.+ .+||... .+++.+|.+|.+.| .+++|+ ++
T Consensus 3 ~~~~~h~~~V-~~~~~s----~~g~~las~s~D~~v--------~iw~~~~~~~~~~~~l~gH~~~V-~~v~~s~~~~g~ 68 (297)
T 2pm7_B 3 VIANAHNEMI-HDAVMD----YYGKRMATCSSDKTI--------KIFEVEGETHKLIDTLTGHEGPV-WRVDWAHPKFGT 68 (297)
T ss_dssp EECCSCSSCE-EEEEEC----TTSSEEEEEETTSCE--------EEEEBCSSCBCCCEEECCCSSCE-EEEEECCGGGCS
T ss_pred eeccCCcCce-EEEEEC----CCCCEEEEEeCCCEE--------EEEecCCCCcEEEEEEccccCCe-EEEEecCCCcCC
Confidence 4578999999 999999 999999999875544 4699874 47788999999988 999996 68
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeEEEEe
Q psy18018 93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMVKIWN 168 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v~iwd 168 (635)
+||||+.|++|++||+.+++ .+.+..+.+|...|.+++| + +.+|++++.|++|++||
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd 129 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGR-------------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSC-------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCc-------------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence 99999999999999987542 1345567789999999999 4 78999999999999999
Q ss_pred CCCccc--eeeccccceeEEeeeccC--------------CCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCCCeEE
Q psy18018 169 PDTEEC--LHAELQETEVELSHGYAL--------------RSRIVSGSDDNTLKVWSATTGK----CLRTLIGHTGGVWS 228 (635)
Q Consensus 169 ~~~~~~--~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~ 228 (635)
+.++.. ...+..+........+.+ +.+|++++.|+.|++||+.+++ ....+.+|...|.+
T Consensus 130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 987642 223333333333333333 2467777777777777766544 44566667776666
Q ss_pred EEeeC-----CEEEEeeCceeEEEec
Q psy18018 229 SQMAG-----NIIISGSTDRTLKGWS 249 (635)
Q Consensus 229 ~~~~~-----~~l~s~~~dg~i~~w~ 249 (635)
++|++ .+|++++.|++|++||
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred EEECCCCCCceEEEEEECCCcEEEEE
Confidence 66532 2344444444444443
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-31 Score=256.40 Aligned_cols=294 Identities=17% Similarity=0.187 Sum_probs=216.6
Q ss_pred ccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCc----------eeeccCcceEEEEEEcCCEE
Q psy18018 25 DDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPK----------VLKGHDDHVITCLQFSGSRI 94 (635)
Q Consensus 25 ~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~----------~l~~h~~~vi~~~~~s~~~l 94 (635)
..+| .|++|+ |||++|++|+.+..- .+-++.+.+|++....... .|.+|.+.+ +|++++++.+
T Consensus 14 g~PV-~sv~fs----~dg~~l~sGGg~~~~-sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v-~s~~~~~~~~ 86 (365)
T 4h5i_A 14 GYPA-YGAKFL----NNDTLLVAGGGGEGN-NGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP-TAIDASKGII 86 (365)
T ss_dssp SSCE-EEEEEE----ETTEEEEEEECCSSS-SSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC-CEEEEETTEE
T ss_pred CCCE-EEEEEe----CCCcEEEEECCCccc-cCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce-EEEEeCCCEE
Confidence 3567 999999 999999998754321 1234557789987665432 366888888 8999999999
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeE----EEEe-----eCCCcceEEEEe--cCCEEEEE--eCC
Q psy18018 95 VSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGEC----LHVL-----VGHLAAVRCVQY--DGKLVVSG--AYD 161 (635)
Q Consensus 95 ~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~----~~~l-----~~h~~~v~~l~~--~~~~l~s~--~~d 161 (635)
++|..++..++|+ ++.|+.+++|++.+.+. .... ..+...+.+++| ||++|+++ +.|
T Consensus 87 ~~g~~~~~~~l~s----------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 87 LVGCNENSTKITQ----------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp EEECCCCHHHHHH----------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred EEEECCCccEEEE----------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 9988777666654 34567788887765421 1111 234556889999 89987654 478
Q ss_pred CeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEE--EeCCCCCeEEEEeeCCEEEEe
Q psy18018 162 YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT--LIGHTGGVWSSQMAGNIIISG 239 (635)
Q Consensus 162 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~ 239 (635)
++|++||+.+++.+..+.++..+....+.+++.++++++ ++.+.+|+..+++.+.. ..+|...|.+++
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--------- 226 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKIN--------- 226 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEE---------
T ss_pred CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEE---------
Confidence 999999999999988887666666666666677777776 45677777777766543 234555555444
Q ss_pred eCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEee
Q psy18018 240 STDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA 319 (635)
Q Consensus 240 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (635)
T Consensus 227 -------------------------------------------------------------------------------- 226 (365)
T 4h5i_A 227 -------------------------------------------------------------------------------- 226 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC----eEEEEEccCCce----EEeeeCCCcceeEEEE
Q psy18018 320 EDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT----SIRVWEAESGNL----RHTLMGHQSLTSGMEL 391 (635)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~i~v~~~~~~~~----~~~~~~~~~~v~~l~~ 391 (635)
|+|++.++++++.++ .++.|+...... ...+.+|...|.+++|
T Consensus 227 -----------------------------fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 227 -----------------------------FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp -----------------------------EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred -----------------------------EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence 667777777766655 567777665432 3456778888888887
Q ss_pred eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccEEEEEec--CCE
Q psy18018 392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNI 468 (635)
Q Consensus 392 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~--~~~ 468 (635)
+ |+|++|++|+.|++|++||+++++++..+ .+|...|++++|+ +++
T Consensus 278 S-------------------------------pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 278 D-------------------------------MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp C-------------------------------TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred C-------------------------------CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 5 77888999999999999999999988875 7899999999984 679
Q ss_pred EEEEeCCCcEEEEECCC
Q psy18018 469 LVSGNADSTVKVWDIVS 485 (635)
Q Consensus 469 l~s~~~dg~i~iwd~~~ 485 (635)
|++++.|++|+|||+..
T Consensus 327 laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCC
Confidence 99999999999999964
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.6e-31 Score=254.74 Aligned_cols=234 Identities=14% Similarity=0.116 Sum_probs=173.3
Q ss_pred EEecCc-EEEEecCCCeEEEEEc-cCCceEEeeeC--CCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 349 FQFDGV-HVVSGSLDTSIRVWEA-ESGNLRHTLMG--HQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 349 ~s~~~~-~l~~~~~dg~i~v~~~-~~~~~~~~~~~--~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
|+|+++ +|++|+.||.|++|++ .+++. ..+.+ |...|.+++|+ ++.+++++.|+.|++||+.+......
T Consensus 64 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----- 137 (342)
T 1yfq_A 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI----- 137 (342)
T ss_dssp EEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE-----
T ss_pred ECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccc-----
Confidence 666777 7777777777777777 65544 56677 99999999987 45566665555555555442100000
Q ss_pred eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCC-Ccee--EEecCCCcccc
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS-GQCL--QTLSGRNKHQS 500 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~~ 500 (635)
. ..++.+..+. |...+.++.++++.+++++.|+.|++||+.+ +... ..... +..
T Consensus 138 ---------------~----~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~ 194 (342)
T 1yfq_A 138 ---------------A----VKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG---LKY 194 (342)
T ss_dssp ---------------E----EEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS---CSS
T ss_pred ---------------c----ccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecC---CCC
Confidence 0 0044444555 8889999999988899999999999999987 5432 22222 677
Q ss_pred cEEEEEe---cCCEEEEEeCCCcEEEEECCCC------ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018 501 AVTCLQF---NSRFVITSSDDGTVKLWDVKTG------EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD 571 (635)
Q Consensus 501 ~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 571 (635)
.+.++++ +++++++++.||.|++|+++.. +....+..+.... ....|...|.+++|+|++++|++++.|
T Consensus 195 ~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL--KDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT--TCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc--cccccceeEEEEEEcCCCCEEEEecCC
Confidence 8999988 4689999999999999999876 4444443321100 011234489999999999999999999
Q ss_pred CeEEEEeCCCCceEEeeeeccCCCC-CceEEEEEeCCCCeEEEEccCCCe
Q psy18018 572 GTVKLWDVKTGEFIRNLVSLDSGGS-GGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 572 ~~v~iwd~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
|.|++||+.+++.+..+ .+| ..+|.+++ |++++|++++.||.
T Consensus 273 g~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNF-----AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SCEEEEETTTTEEEEEC-----CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ceEEEEcCccHhHhhhh-----hcccCCCceEec--CCCCeEEEEecCCc
Confidence 99999999999999888 466 89999999 99999999999997
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.7e-31 Score=255.90 Aligned_cols=236 Identities=14% Similarity=0.125 Sum_probs=174.5
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|.. ++++.+
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~-----------------------------~~~~~~ 143 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIK-----------------------------APNYSC 143 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEE-----------------------------CSSCEE
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEe-----------------------------CCCCCE
Confidence 55566666677777777777776665544 456888888888731 255667
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE-ecCCCcccccEEEEEe
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT-LSGRNKHQSAVTCLQF 507 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~ 507 (635)
+++++.|+.|++||+++++.+..+..+. .+.++.+.+..+++++.++.+++|++........ +.....+...+.++.+
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK 222 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred EEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc
Confidence 7888888888888888888888887664 6778888888999999999999999987654333 2222224444444444
Q ss_pred cCCE----EEEEeCCCcEEEEECCCCc---eeeeeccceec-CceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 508 NSRF----VITSSDDGTVKLWDVKTGE---FSTPLMSSFIL-NPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 508 ~~~~----l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
+... +++++.||.|++|+++... ....+..+... .......|...|++++|+|++++|++++.||.|++||+
T Consensus 223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 4443 9999999999999999873 33333332110 01111223447999999999999999999999999999
Q ss_pred CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
.+++.+..+ ..|..+|.+++|+|||++|++++.|+.
T Consensus 303 ~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 303 DARTKLKTS-----EQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp TTTEEEEEC-----CCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred CCCcEEEEe-----cCCCCCceEEEECCCCCeEEEEecccc
Confidence 999999888 578899999999999999999999874
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-30 Score=256.80 Aligned_cols=261 Identities=21% Similarity=0.336 Sum_probs=217.9
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee--CCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF 419 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 419 (635)
...++|+++ +.|++|. |+.|++||..+++....+. +|...|++++|+ +++|++|+.||.|++||+.+++.....
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 456788865 5677765 8999999999999877665 677789999997 679999999999999999988765443
Q ss_pred E-------EEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce-
Q psy18018 420 R-------ICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC- 488 (635)
Q Consensus 420 ~-------~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~- 488 (635)
. .+++++..+++|+.|+.+++||.... ..+..+.+|...+..+.+ +++++++++.|+.+++|+..+++.
T Consensus 186 ~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 186 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 2 46778999999999999999998864 556788999999998887 467999999999999999987653
Q ss_pred ---eEEecCCCcccccEEEEEe---cCCEEEEE--eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018 489 ---LQTLSGRNKHQSAVTCLQF---NSRFVITS--SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF 560 (635)
Q Consensus 489 ---~~~~~~~~~~~~~v~~~~~---~~~~l~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (635)
+..... |...|.+++| ++.+++++ +.|++|++||+.+++....+.. ...+.++.|+|
T Consensus 266 ~~~~~~~~~---~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~------------~~~v~~~~~~~ 330 (420)
T 4gga_A 266 WVPLQTFTQ---HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------HSQVCSILWSP 330 (420)
T ss_dssp SCCSEEECC---CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC------------SSCEEEEEEET
T ss_pred ceeeeeecc---cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc------------ccceeeeeecC
Confidence 333443 8889999999 35666654 5799999999999987765543 56788999999
Q ss_pred CCeEEEEec--CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 561 NSRFVITSS--DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 561 ~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
+++.+++++ .|+.|+|||+.+++++..+ .+|.+.|++|+|+|||++|++|+.|++ ++||.+
T Consensus 331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~t--vriWdv 393 (420)
T 4gga_A 331 HYKELISGHGFAQNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADET--LRLWRC 393 (420)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTE--EEEECC
T ss_pred CCCeEEEEEecCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCe--EEEEEC
Confidence 999888764 7899999999999999998 689999999999999999999999998 566643
No 94
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.3e-30 Score=281.53 Aligned_cols=476 Identities=12% Similarity=0.079 Sum_probs=323.7
Q ss_pred eeeeecCCCCCCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcce---
Q psy18018 7 EINWRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV--- 83 (635)
Q Consensus 7 ~~~~~~~~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~v--- 83 (635)
++.|+... .+.+.|.+|...+ .+++|| |||++||.++.... -..+..+.+||..+++ .+.|.+|...+
T Consensus 35 l~~~~~~g-g~~~~lt~~~~~v-~~~~~S----PDG~~la~~s~~~~--~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~ 105 (1045)
T 1k32_A 35 LWEHDLKS-GSTRKIVSNLGVI-NNARFF----PDGRKIAIRVMRGS--SLNTADLYFYNGENGE-IKRITYFSGKSTGR 105 (1045)
T ss_dssp EEEEETTT-CCEEEEECSSSEE-EEEEEC----TTSSEEEEEEEEST--TCCEEEEEEEETTTTE-EEECCCCCEEEETT
T ss_pred EEEEECCC-CcEEEeeeCCCcc-cCeEEC----CCCCEEEEEEeecc--CCCCCeEEEEECCCCC-eEEcccCCCccccc
Confidence 46677554 3467889999998 999999 99999998764310 0124567789998876 57788887754
Q ss_pred ---EEEEEEc--CCEEEEeeCC------CcEEEEECCCCcEE----------------EEEeeC------------CCcE
Q psy18018 84 ---ITCLQFS--GSRIVSGSDD------NTLKVWSATTGKCL----------------LVSGSR------------DATL 124 (635)
Q Consensus 84 ---i~~~~~s--~~~l~s~~~d------~~v~vWd~~~~~~l----------------l~~~~~------------dg~i 124 (635)
+.+++|| |+++++++.+ ..|.+|++.+++.. +++++. +...
T Consensus 106 ~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~ 185 (1045)
T 1k32_A 106 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRG 185 (1045)
T ss_dssp EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCC
T ss_pred ccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcC
Confidence 3789999 8877777754 45888888776543 223221 2345
Q ss_pred EEEeCCCCeEEEEeeCCCcceEEEEecC-CEEEEEeCCCeEEEEeCCC-ccceeeccccceeEEeeeccCCCEEEEEeCC
Q psy18018 125 RVWHIESGECLHVLVGHLAAVRCVQYDG-KLVVSGAYDYMVKIWNPDT-EECLHAELQETEVELSHGYALRSRIVSGSDD 202 (635)
Q Consensus 125 ~vwd~~~~~~~~~l~~h~~~v~~l~~~~-~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 202 (635)
.+|....+.....+.+|...+.++.|.+ ..+++++.|+++++|.+.. +.....+..+.........+++..++.+ .+
T Consensus 186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~ 264 (1045)
T 1k32_A 186 KIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KG 264 (1045)
T ss_dssp EEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ET
T ss_pred CEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eC
Confidence 5664333344556689999999999943 4556777889999998653 3333333333333333445666777776 58
Q ss_pred CcEEEEECCCCeEEEEEeC-----------CCCCeEEEEee---CCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018 203 NTLKVWSATTGKCLRTLIG-----------HTGGVWSSQMA---GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268 (635)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~-----------h~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 268 (635)
+.|++||+...+ +..+.+ |...+.+++|+ ++.+++++ ++.+.+|+.........
T Consensus 265 ~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---------- 332 (1045)
T 1k32_A 265 GSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---------- 332 (1045)
T ss_dssp TEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC----------
T ss_pred CEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc----------
Confidence 999999995443 445554 23457777765 56777777 78899998765321100
Q ss_pred eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccC-CCceE
Q psy18018 269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTH-VPDLF 347 (635)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 347 (635)
..... ....+
T Consensus 333 ---------------------------------------------------------------------~~~~~~~~~~~ 343 (1045)
T 1k32_A 333 ---------------------------------------------------------------------PEPLRIRYVRR 343 (1045)
T ss_dssp ---------------------------------------------------------------------SCCSCEEEEEE
T ss_pred ---------------------------------------------------------------------cCCCcceEEee
Confidence 00000 12234
Q ss_pred EEEecCcEEEEecCCCeEE-EEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 348 GFQFDGVHVVSGSLDTSIR-VWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~-v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
+|+ +|+.++.++.++.+. +|+..+++... +.+|...+..++| +|||
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~-------------------------------SpDG 390 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGV-------------------------------DRNG 390 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEE-------------------------------CTTS
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEE-------------------------------CCCC
Confidence 577 888898888888888 89988766543 3366666666655 4788
Q ss_pred cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCC----------cEEEEECCCCceeEEecC
Q psy18018 427 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADS----------TVKVWDIVSGQCLQTLSG 494 (635)
Q Consensus 427 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~ 494 (635)
++|++++.++.+++||+.+++....+.+|...+.+++| ++++|++++.++ .|++||+.+++ ...+..
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~ 469 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT 469 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC
Confidence 88888888889999999998888877788887777776 567888877654 89999999877 555554
Q ss_pred CCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeee-------e--c----------------------ccee-
Q psy18018 495 RNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTP-------L--M----------------------SSFI- 540 (635)
Q Consensus 495 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~-------~--~----------------------~~~~- 540 (635)
+...+..++| ||++|++++.++...+|+......... + . ....
T Consensus 470 ---~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 546 (1045)
T 1k32_A 470 ---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 546 (1045)
T ss_dssp ---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ---CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHh
Confidence 6666777888 799999999988888888654432100 0 0 0000
Q ss_pred cCceeEEeccCceecccccCCCeEEEE-------------ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018 541 LNPFYFLIYSQPLLCPHLQFNSRFVIT-------------SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE 607 (635)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~-------------~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 607 (635)
........+...+..++++||++++++ ......|.+||+.+++. ..+. ..+.+++|||
T Consensus 547 ~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--------~~v~~~~~S~ 617 (1045)
T 1k32_A 547 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK--------NNLTDLRLSA 617 (1045)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE--------EEEEEEEECT
T ss_pred HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE-EEee--------cCcceEEECC
Confidence 001111224567889999999998885 12345789999998875 3331 5688999999
Q ss_pred CCeEEEEccCCC
Q psy18018 608 TKLVCAVGSRNG 619 (635)
Q Consensus 608 d~~~l~~~~~dg 619 (635)
||++|++++.++
T Consensus 618 DG~~l~~~~~~~ 629 (1045)
T 1k32_A 618 DRKTVMVRKDDG 629 (1045)
T ss_dssp TSCEEEEEETTS
T ss_pred CCCEEEEEcCCc
Confidence 999999998874
No 95
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=246.03 Aligned_cols=263 Identities=20% Similarity=0.303 Sum_probs=214.7
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee--CCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF 419 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~ 419 (635)
..+++||+++ .|++| .|+.|++||+.+++++..+. +|...|.+++|+ ++++++|+.||.|++|++.+++.....
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 3568899876 66666 48999999999999887765 577789999997 679999999999999999988765544
Q ss_pred E-------EEeeCCcEEEEEeCCCcEEEEeCCCC-ceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee
Q psy18018 420 R-------ICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL 489 (635)
Q Consensus 420 ~-------~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 489 (635)
. .+++++..+++++.++.+++|+.... ..+..+.+|...+..+.+ +++++++++.|+.|++||+.+++..
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 3 36778899999999999999999875 456778899999998887 4679999999999999999876533
Q ss_pred EEe-cCCCcccccEEEEEe---cCCEE--EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 490 QTL-SGRNKHQSAVTCLQF---NSRFV--ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 490 ~~~-~~~~~~~~~v~~~~~---~~~~l--~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
... .....+...|.++++ ++..+ ++++.++.|++||.+........ .+...+..++|+|+++
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~------------~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV------------DAHSQVCSILWSPHYK 253 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE------------ECSSCEEEEEEETTTT
T ss_pred ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc------------cceeeeeeeeeccccc
Confidence 211 112226778888888 24443 56778899999999887755433 2567889999999999
Q ss_pred EEEEec--CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018 564 FVITSS--DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 564 ~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
.+++++ .|+.|+|||+.+++++..+ .+|.+.|++|+|+|||++|++|+.||+ ++||.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l-----~gH~~~V~~l~~spdg~~l~S~s~D~~--v~iWd 312 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAEL-----KGHTSRVLSLTMSPDGATVASAAADET--LRLWR 312 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEETTTE--EEEEC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCe--EEEEE
Confidence 887654 7999999999999999998 689999999999999999999999998 55554
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.3e-32 Score=254.02 Aligned_cols=198 Identities=23% Similarity=0.250 Sum_probs=133.4
Q ss_pred ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC--CCceeeccCcceEEEEEEc----CC
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK--DPKVLKGHDDHVITCLQFS----GS 92 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~--~~~~l~~h~~~vi~~~~~s----~~ 92 (635)
..+.||.+.| ++++|+ |+|++||+++.++. +.+||..+++ ++..+.+|.+.| .+++|+ ++
T Consensus 7 ~~~~~H~~~V-~~v~~s----~~g~~lasgs~D~~--------v~lwd~~~~~~~~~~~l~gH~~~V-~~v~~~~~~~~~ 72 (316)
T 3bg1_A 7 TVDTSHEDMI-HDAQMD----YYGTRLATCSSDRS--------VKIFDVRNGGQILIADLRGHEGPV-WQVAWAHPMYGN 72 (316)
T ss_dssp -------CCE-EEEEEC----GGGCEEEEEETTTE--------EEEEEEETTEEEEEEEEECCSSCE-EEEEECCGGGSS
T ss_pred eecccccCeE-EEeeEc----CCCCEEEEEeCCCe--------EEEEEecCCCcEEEEEEcCCCccE-EEEEeCCCCCCC
Confidence 5678999999 999999 99999999987544 4469998764 467899999988 999996 78
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeEEEEe
Q psy18018 93 RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMVKIWN 168 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v~iwd 168 (635)
+||||+.|++|++||+++++ .+....+.+|...|.+++| + +.+|++++.|++|++||
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~-------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGT-------------------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp CEEEEETTSCEEEECCSSSC-------------------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred EEEEEECCCEEEEEECCCCc-------------------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 99999999999999987542 2355677899999999999 4 77999999999999999
Q ss_pred CCCccc---eeeccccceeEEeeeccC------------------CCEEEEEeCCCcEEEEECCCC---eEEEEEeCCCC
Q psy18018 169 PDTEEC---LHAELQETEVELSHGYAL------------------RSRIVSGSDDNTLKVWSATTG---KCLRTLIGHTG 224 (635)
Q Consensus 169 ~~~~~~---~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~ 224 (635)
+..+.. ...+..+........+.+ +.+|++++.|+.|++||+... +++..+.+|..
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 987632 222223322222222222 245666666666666666543 34455566666
Q ss_pred CeEEEEeeC------CEEEEeeCceeEEEec
Q psy18018 225 GVWSSQMAG------NIIISGSTDRTLKGWS 249 (635)
Q Consensus 225 ~v~~~~~~~------~~l~s~~~dg~i~~w~ 249 (635)
.|.+++|+. .+|++++.||+|++|+
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 666666531 3344444444444444
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.6e-31 Score=254.88 Aligned_cols=291 Identities=18% Similarity=0.243 Sum_probs=230.1
Q ss_pred eecCCCCCCceeeccCcceEEEEEEc-C----CEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018 65 WRTRPIKDPKVLKGHDDHVITCLQFS-G----SRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLV 139 (635)
Q Consensus 65 wd~~~~~~~~~l~~h~~~vi~~~~~s-~----~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~ 139 (635)
|+..+.+.++.+.+|.+.| +|++|+ . ++|++|+.||.|++||+.+.. ......+.
T Consensus 24 ~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------~~~~~~~~ 83 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSI-GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------QTIPKAQQ 83 (368)
T ss_dssp CSSCTTCCEECSSCCSSCE-EEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-------------------CEEEEEEE
T ss_pred CCCCCcceeEeccCCCCce-EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-------------------ceeEEEec
Confidence 6777888888999999998 999999 3 799999999999999987521 23336778
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeee--ccCCCEEEEEeCCCcEEEEECCCCeE
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHG--YALRSRIVSGSDDNTLKVWSATTGKC 215 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~ 215 (635)
+|.++|++++| ++++|++++.||.|++||+.+++.+....+...+..... .+.+..+++++.||.|++||+.++++
T Consensus 84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 99999999999 899999999999999999999987775555555555554 45667899999999999999999999
Q ss_pred EEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeE
Q psy18018 216 LRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALY 295 (635)
Q Consensus 216 ~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (635)
+..+..|. .+.++.+.+..+++++.++.+++|++..........
T Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------------- 207 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI----------------------------------- 207 (368)
T ss_dssp SEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC-----------------------------------
T ss_pred EEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc-----------------------------------
Confidence 99988665 788888889999999999999999987542211000
Q ss_pred EEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcE----EEEecCCCeEEEEEcc
Q psy18018 296 VLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVH----VVSGSLDTSIRVWEAE 371 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~~~~dg~i~v~~~~ 371 (635)
.....+...++++.++... +++++.||.|++|++.
T Consensus 208 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 208 -----------------------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp -----------------------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred -----------------------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 0112233344555555444 9999999999999998
Q ss_pred CC---ceEEeeeCCCc------------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCC
Q psy18018 372 SG---NLRHTLMGHQS------------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDT 436 (635)
Q Consensus 372 ~~---~~~~~~~~~~~------------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~ 436 (635)
.. .....+..|.. .|.+++| +|++++|++++.||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------------------------------sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-------------------------------HPVHGTLATVGSDG 295 (368)
T ss_dssp CSCHHHHSEEEECSEEC----CCCEEECCEEEEEE-------------------------------CTTTCCEEEEETTS
T ss_pred CCCccccceeeeeeecccccccccccccceEEEEE-------------------------------ecCCCEEEEEccCC
Confidence 77 45667777765 3555544 46778889999999
Q ss_pred cEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEEC
Q psy18018 437 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDI 483 (635)
Q Consensus 437 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 483 (635)
.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|+..+.|++
T Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 99999999999999999999999999984 669999999886555544
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-31 Score=252.75 Aligned_cols=242 Identities=19% Similarity=0.274 Sum_probs=184.2
Q ss_pred cCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 341 THVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 341 ~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
......++|+|++++|++|+.|+.|++||+.++. .+..+.+|...|.+++|++.
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~------------------------ 68 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP------------------------ 68 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG------------------------
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC------------------------
Confidence 3455668899999999999999999999998765 46788999999999998510
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCC--ceeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~ 492 (635)
.++++|++++.|++|++||++++ +....+.+|...|.+++|+ +.+|++++.|+.|++||+..+......
T Consensus 69 -----~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 69 -----MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp -----GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred -----CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 02334555555555555555554 3456678899999999985 458999999999999999876432222
Q ss_pred cCCCcccccEEEEEec-------------------CCEEEEEeCCCcEEEEECCCCc---eeeeeccceecCceeEEecc
Q psy18018 493 SGRNKHQSAVTCLQFN-------------------SRFVITSSDDGTVKLWDVKTGE---FSTPLMSSFILNPFYFLIYS 550 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~~-------------------~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~ 550 (635)
.....|...+.+++|+ +++|++++.|+.|++||++... ....+. .|.
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-----------~h~ 212 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-----------AHS 212 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-----------CCS
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-----------cCC
Confidence 2223477888888884 2589999999999999997542 222222 378
Q ss_pred CceecccccCCC----eEEEEecCCCeEEEEeCCCCc---e-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeE
Q psy18018 551 QPLLCPHLQFNS----RFVITSSDDGTVKLWDVKTGE---F-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEE 622 (635)
Q Consensus 551 ~~v~~~~~s~~~----~~l~~~~~d~~v~iwd~~~~~---~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~ 622 (635)
..|.+++|+|++ ++||+++.|++|+|||+.+.. . ...+ ..|...|++++|+|++++||+++.||.
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-----~~~~~~v~~v~~sp~g~~las~~~D~~-- 285 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-----HKFNDVVWHVSWSITANILAVSGGDNK-- 285 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-----EECSSCEEEEEECTTTCCEEEEESSSC--
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-----hcCCCcEEEEEEcCCCCEEEEEcCCCe--
Confidence 899999999987 899999999999999998732 1 1122 246789999999999999999999998
Q ss_pred eEEEEEe
Q psy18018 623 TKLLVLD 629 (635)
Q Consensus 623 ~~l~~~d 629 (635)
++||..+
T Consensus 286 v~lw~~~ 292 (316)
T 3bg1_A 286 VTLWKES 292 (316)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 6666554
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=260.45 Aligned_cols=275 Identities=16% Similarity=0.215 Sum_probs=211.7
Q ss_pred ccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc-----------eEEeeeCCC------------cceeEEEEeC---
Q psy18018 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----------LRHTLMGHQ------------SLTSGMELRN--- 393 (635)
Q Consensus 340 ~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~~~~------------~~v~~l~~~~--- 393 (635)
......+++|+|++++|++|+.||.|++|++.+++ ....+.+|. ..|.+++|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 44667788999999999999999999999999877 577889998 8899999973
Q ss_pred -CEEEEEeCCCcEEEEEccCCcce-------------------------------------------------eEEEEEe
Q psy18018 394 -NILVSGNADSTVKVWDIVSGTKK-------------------------------------------------LMFRICL 423 (635)
Q Consensus 394 -~~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------------~~~~~~~ 423 (635)
..+++++.|+.|++||+.++... .....++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 58999999999999998763221 1122478
Q ss_pred eCCcEEEEEeCCCcEEEEeCCC-Cceee-------eeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCce----
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAES-GNLRH-------TLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQC---- 488 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~-~~~~~-------~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~---- 488 (635)
|++++|+++ .|+.|++||+.+ ++... .+.+|...|.+++++ + +++++++.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 899999998 899999999984 44443 356899999999985 3 6999999999999999998886
Q ss_pred eEEecCCCcccc------------cEEEEEe--cCCEEEEEeCCCcEEEEECCC-CceeeeeccceecCcee-EEeccC-
Q psy18018 489 LQTLSGRNKHQS------------AVTCLQF--NSRFVITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFY-FLIYSQ- 551 (635)
Q Consensus 489 ~~~~~~~~~~~~------------~v~~~~~--~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~-~~~~~~- 551 (635)
...+.. |.. .|.+++| ++++|++++. +.|++||+++ ++.+..+..+....... ......
T Consensus 266 ~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 266 SKLFEE---PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CEEECC---C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred eeEecc---CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 667765 444 8999999 6899999998 9999999997 76666555431100000 000001
Q ss_pred --ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeec---------------------------cCCCCCceEEE
Q psy18018 552 --PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSL---------------------------DSGGSGGVVWR 602 (635)
Q Consensus 552 --~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------------------------~~~~~~~~i~~ 602 (635)
.+..++|+|++++|++|+.||.|++||+.+++.+...... ........|..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 1334899999999999999999999999999876422100 01133567899
Q ss_pred EEeCCCCeEEEEccCCC
Q psy18018 603 IRASETKLVCAVGSRNG 619 (635)
Q Consensus 603 l~~s~d~~~l~~~~~dg 619 (635)
++|+|++.+||+++.++
T Consensus 422 ~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN 438 (447)
T ss_dssp EEECSSSSEEEEECSSC
T ss_pred EEECCCCCEEEEEecce
Confidence 99999999999999998
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.1e-30 Score=246.90 Aligned_cols=294 Identities=11% Similarity=0.091 Sum_probs=196.9
Q ss_pred EEECCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccce
Q psy18018 207 VWSATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDF 284 (635)
Q Consensus 207 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (635)
+|++.+.+++..+..|...|.+++|+ +++|++|+.|+ +++|+.........
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-------------------------- 55 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-------------------------- 55 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--------------------------
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--------------------------
Confidence 56677778888889999999999995 78898888776 78999765432110
Q ss_pred eeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEE-EEecCCC
Q psy18018 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHV-VSGSLDT 363 (635)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg 363 (635)
........+++.++++.+ ++++.++
T Consensus 56 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 56 ------------------------------------------------------QEMRHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ------------------------------------------------------EECSCCCEEEECTTSSEEEEECSSTT
T ss_pred ------------------------------------------------------eecCCeEEEEEcCCCCEEEEEECCcc
Confidence 000123445677777766 5678889
Q ss_pred eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeC
Q psy18018 364 SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEA 443 (635)
Q Consensus 364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~ 443 (635)
.|++||..+++.+..+. +...|.++.++++.++++. ++. |++||+
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~---------------------------------i~i~d~ 126 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDV---------------------------------ISVFKF 126 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTE---------------------------------EEEEES
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCE---------------------------------EEEEEC
Confidence 99999999999988886 5668999998876555442 344 555555
Q ss_pred CCC-ceeeeeccCCccEEEEEecCCEEEE--EeCCCcEEEEECCCCc---------------e-eEEecCCCcccccEEE
Q psy18018 444 ESG-NLRHTLMGHQSLTSGMELRNNILVS--GNADSTVKVWDIVSGQ---------------C-LQTLSGRNKHQSAVTC 504 (635)
Q Consensus 444 ~~~-~~~~~~~~~~~~v~~~~~~~~~l~s--~~~dg~i~iwd~~~~~---------------~-~~~~~~~~~~~~~v~~ 504 (635)
.++ +.+..+.. ...+.+++ ..+++. |+.||.|++||+.+++ + +..+.+ |...|.+
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~s--~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~---h~~~v~~ 200 (355)
T 3vu4_A 127 GNPWKRITDDIR-FGGVCEFS--NGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA---HTNPIKM 200 (355)
T ss_dssp STTCCBSSCCEE-EEEEEEEE--TTEEEEEESSCTTCEEEEECCC------------------CCEEECC---CSSCEEE
T ss_pred CCCceeeEEecc-CCceEEEE--ccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc---cCCceEE
Confidence 544 44444433 22233333 366666 5889999999998765 1 566666 9999999
Q ss_pred EEe--cCCEEEEEeCCCc-EEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 505 LQF--NSRFVITSSDDGT-VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 505 ~~~--~~~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
++| ++++|++++.|++ |++||+++++.+..+... .|...|++++|+||+++|++++.|++|+|||+..
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---------~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---------LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---------TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---------CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 999 6899999999998 999999999887766521 1678999999999999999999999999999976
Q ss_pred CceEE--eeee---------------c-cCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018 582 GEFIR--NLVS---------------L-DSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD 633 (635)
Q Consensus 582 ~~~~~--~~~~---------------~-~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~ 633 (635)
+.... .+.. . .+.....+...++|++||++|++++.||. +++|.+..+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~--~~~~~~~~~~~ 339 (355)
T 3vu4_A 272 DQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM--IETFKVVFDDE 339 (355)
T ss_dssp CSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE--EEEEEEEEETT
T ss_pred CCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe--EEEEEEEcCCC
Confidence 53211 1100 0 00112233467999999999999999998 55665555444
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-32 Score=263.61 Aligned_cols=303 Identities=16% Similarity=0.101 Sum_probs=203.2
Q ss_pred EeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCc--cceeeccccceeEEe-eeccCCCEEEEEeCCCcEEEEECC
Q psy18018 137 VLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTE--ECLHAELQETEVELS-HGYALRSRIVSGSDDNTLKVWSAT 211 (635)
Q Consensus 137 ~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~vwd~~ 211 (635)
.+..|.++|++++| ++++|++++.|+.|++||+.++ +.+..+..+...+.. .+.+++.+|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999 8999999999999999999988 666677666554444 444567899999999999999998
Q ss_pred CCe---EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeecc
Q psy18018 212 TGK---CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288 (635)
Q Consensus 212 ~~~---~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (635)
+++ ....+.+|...|.+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~--------------------------------------------------------- 108 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRW--------------------------------------------------------- 108 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEEC---------------------------------------------------------
T ss_pred CCCceeeeeEecccCCceEEEEE---------------------------------------------------------
Confidence 876 56677788888887775
Q ss_pred ccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEE
Q psy18018 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW 368 (635)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~ 368 (635)
+|++++|++++.|+.|++|
T Consensus 109 -------------------------------------------------------------~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 109 -------------------------------------------------------------SPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp -------------------------------------------------------------CTTSSCCEEEESSSCEEEC
T ss_pred -------------------------------------------------------------CCCCCEEEEEecCCeEEEE
Confidence 3344444455555555555
Q ss_pred EccCCc---eEEeeeC-CCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEe
Q psy18018 369 EAESGN---LRHTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWE 442 (635)
Q Consensus 369 ~~~~~~---~~~~~~~-~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d 442 (635)
|+.+++ ....+.. |...|.+++|+ +.+|++++.|+.|++||+.......... ...|.
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~ 190 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE-----------------ASVWG 190 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC-----------------SCSSC
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc-----------------ccccc
Confidence 554443 2445555 88999999997 4578888888888888875432110000 00010
Q ss_pred --CCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce----eEEecCCCcccccEEEEEe--cCCEE
Q psy18018 443 --AESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC----LQTLSGRNKHQSAVTCLQF--NSRFV 512 (635)
Q Consensus 443 --~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l 512 (635)
+..++++..+ +|...|.+++++ +++|++++.|+.|++||+.+++. +..+.. |...|.+++| ++++|
T Consensus 191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l 266 (377)
T 3dwl_C 191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL---SQLPLRSLLWANESAIV 266 (377)
T ss_dssp SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC---SSSCEEEEEEEETTEEE
T ss_pred cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC---CCCceEEEEEcCCCCEE
Confidence 0234556666 899999999984 66999999999999999999887 666666 8889999999 68889
Q ss_pred EEEeCCCcEEEEECCCCc--eeeeeccceec---------------------------------------CceeEEeccC
Q psy18018 513 ITSSDDGTVKLWDVKTGE--FSTPLMSSFIL---------------------------------------NPFYFLIYSQ 551 (635)
Q Consensus 513 ~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~---------------------------------------~~~~~~~~~~ 551 (635)
++++.++.+ +|+..... ....+...... .......|..
T Consensus 267 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~ 345 (377)
T 3dwl_C 267 AAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN 345 (377)
T ss_dssp EEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSS
T ss_pred EEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccc
Confidence 888766655 77665322 11111100000 0001112888
Q ss_pred ceecccccCCC-e---EEEEecCCCeEEEEeC
Q psy18018 552 PLLCPHLQFNS-R---FVITSSDDGTVKLWDV 579 (635)
Q Consensus 552 ~v~~~~~s~~~-~---~l~~~~~d~~v~iwd~ 579 (635)
.|+++++.++. . .|+|++.||.|+|||+
T Consensus 346 ~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 346 MIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred eeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 99999976543 3 6999999999999985
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.6e-30 Score=247.72 Aligned_cols=277 Identities=10% Similarity=0.111 Sum_probs=211.4
Q ss_pred ccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC---CCceeeccCcceEEEEEEc--CC-
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK---DPKVLKGHDDHVITCLQFS--GS- 92 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~---~~~~l~~h~~~vi~~~~~s--~~- 92 (635)
+...+|.+.| ++++|+ |++++|++++.++ .+.+||..+++ ....+.+|...+ .+++|+ ++
T Consensus 5 ~~~~~h~~~v-~~~~~s----~~~~~l~~~~~d~--------~v~iw~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~ 70 (342)
T 1yfq_A 5 QIEQAPKDYI-SDIKII----PSKSLLLITSWDG--------SLTVYKFDIQAKNVDLLQSLRYKHPL-LCCNFIDNTDL 70 (342)
T ss_dssp ECSSCCSSCE-EEEEEE----GGGTEEEEEETTS--------EEEEEEEETTTTEEEEEEEEECSSCE-EEEEEEESSSE
T ss_pred ecccCCCCcE-EEEEEc----CCCCEEEEEcCCC--------eEEEEEeCCCCccccceeeeecCCce-EEEEECCCCCc
Confidence 4456999998 999999 9999999997644 44569998877 355667899888 999999 88
Q ss_pred EEEEeeCCCcEEEEEC-CCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeC--CCcceEEEEe-cCCEEEEEeCCCeEEEEe
Q psy18018 93 RIVSGSDDNTLKVWSA-TTGKCLLVSGSRDATLRVWHIESGECLHVLVG--HLAAVRCVQY-DGKLVVSGAYDYMVKIWN 168 (635)
Q Consensus 93 ~l~s~~~d~~v~vWd~-~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~--h~~~v~~l~~-~~~~l~s~~~dg~v~iwd 168 (635)
+|++++.||.|++||+ .+++ ...+.+ |...|.+++| .++.|++++.|+.|++||
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~----------------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd 128 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS----------------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS----------------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred EEEEEcCCCeEEEEEeccCCc----------------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEc
Confidence 9999999999999988 6543 255667 9999999999 589999999999999999
Q ss_pred CCC---------ccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCC-CeE--EEEEeCCCCCeEEEEeeCCEE
Q psy18018 169 PDT---------EECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT-GKC--LRTLIGHTGGVWSSQMAGNII 236 (635)
Q Consensus 169 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~l 236 (635)
+.+ ++.+..+.....+ ..+.+.++. +++++.++.|++||+.+ +.. ......|...+.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~------ 200 (342)
T 1yfq_A 129 PRNYGDGVIAVKNLNSNNTKVKNKI-FTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA------ 200 (342)
T ss_dssp HHHHTTBCEEEEESCSSSSSSCCCE-EEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE------
T ss_pred ccccccccccccCCeeeEEeeCCce-EEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE------
Confidence 988 7766666543333 344444444 88899999999999887 442 223334555555554
Q ss_pred EEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccccee
Q psy18018 237 ISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWR 316 (635)
Q Consensus 237 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (635)
T Consensus 201 -------------------------------------------------------------------------------- 200 (342)
T 1yfq_A 201 -------------------------------------------------------------------------------- 200 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcchhhhhhhhhhhccccccCCCceEEEEe-cCcEEEEecCCCeEEEEEccCC------ceEEeeeCCCc-----
Q psy18018 317 FLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESG------NLRHTLMGHQS----- 384 (635)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~------~~~~~~~~~~~----- 384 (635)
++| +++++++++.+|.|++|++... +....+..|..
T Consensus 201 --------------------------------~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 201 --------------------------------LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp --------------------------------ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred --------------------------------ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence 555 5666666666666666666654 55555655544
Q ss_pred ----ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-CccE
Q psy18018 385 ----LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-QSLT 459 (635)
Q Consensus 385 ----~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~v 459 (635)
.|.+++|+ |++++|++++.||.|++||+.+++.+..+.+| ...|
T Consensus 249 ~~~~~i~~~~~s-------------------------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 249 NLAYPVNSIEFS-------------------------------PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp SSCCCEEEEEEC-------------------------------TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred ccceeEEEEEEc-------------------------------CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 66666664 56777888888889999999999999999998 9999
Q ss_pred EEEEecCCEEEEEeCCCc-EEEEE
Q psy18018 460 SGMELRNNILVSGNADST-VKVWD 482 (635)
Q Consensus 460 ~~~~~~~~~l~s~~~dg~-i~iwd 482 (635)
.+++.++++|++++.||. .+.+.
T Consensus 298 ~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCSS
T ss_pred eEecCCCCeEEEEecCCccccccc
Confidence 999988889999999998 55544
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.8e-30 Score=247.72 Aligned_cols=305 Identities=17% Similarity=0.233 Sum_probs=200.3
Q ss_pred EEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc----ceeeccccceeEEeeeccC---CCEEEEEeCCCcEE
Q psy18018 136 HVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE----CLHAELQETEVELSHGYAL---RSRIVSGSDDNTLK 206 (635)
Q Consensus 136 ~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~ 206 (635)
..+.+|.++|++++| ++++|++++.||.|++||+.++. ....+..+...+..+.+.+ +.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356799999999999 89999999999999999998764 4444555555555555543 78999999999999
Q ss_pred EEECCCC---------eEEEEEeCCCCCeEEEEee----CCEEEEeeCceeEEEecccceeeeccccccccCccceeeee
Q psy18018 207 VWSATTG---------KCLRTLIGHTGGVWSSQMA----GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMM 273 (635)
Q Consensus 207 vwd~~~~---------~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (635)
+||+.++ +++..+.+|...|.+++|+ ++++++++.||.|++||+.+.....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---------------- 148 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR---------------- 148 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT----------------
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc----------------
Confidence 9999887 6678888999999999984 6678888888888888865431100
Q ss_pred eeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecC
Q psy18018 274 QLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDG 353 (635)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (635)
. +...
T Consensus 149 ------------------------------------------------------------------------~--~~~~- 153 (351)
T 3f3f_A 149 ------------------------------------------------------------------------S--WTLT- 153 (351)
T ss_dssp ------------------------------------------------------------------------C--CEEE-
T ss_pred ------------------------------------------------------------------------c--cccc-
Confidence 0 0000
Q ss_pred cEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe
Q psy18018 354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS 433 (635)
Q Consensus 354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~ 433 (635)
..+.. .......|...+.+++|++. ..++..+++++
T Consensus 154 ---------~~~~~-------~~~~~~~~~~~~~~~~~~p~----------------------------~~~~~~l~~~~ 189 (351)
T 3f3f_A 154 ---------SEMKV-------LSIPPANHLQSDFCLSWCPS----------------------------RFSPEKLAVSA 189 (351)
T ss_dssp ---------EEEES-------CSCCCSSCSCCCEEEEECCC----------------------------SSSCCEEEEEE
T ss_pred ---------ccccc-------cccccCCcccceeEEEeccC----------------------------CCCCcEEEEec
Confidence 00000 00011245667777777521 01255677777
Q ss_pred CCCcEEEEeCCCCce--eeeeccCCccEEEEEecC------CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEE
Q psy18018 434 LDTSIRVWEAESGNL--RHTLMGHQSLTSGMELRN------NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCL 505 (635)
Q Consensus 434 ~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 505 (635)
.++.+.+|+...++. ...+.+|...|.++.+++ ++|++++.||.|++||+..+........ ........
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~ 266 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE---SLTNSNMF 266 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC---cccceecc
Confidence 777777776666654 667788999999999853 4899999999999999987654443322 22222222
Q ss_pred Ee--cCCEEE----EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 506 QF--NSRFVI----TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 506 ~~--~~~~l~----~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
.. ....+. .+.....+.+|+..+.+.+..+.. |...|++++|+|++++|++++.||.|++||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-----------HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ------------------------CCSEEEEEEEEECT-----------TSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEec-----------ccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 22 122222 223344455555554444444433 7889999999999999999999999999999
Q ss_pred CCCceEEeee
Q psy18018 580 KTGEFIRNLV 589 (635)
Q Consensus 580 ~~~~~~~~~~ 589 (635)
.+++.+..+.
T Consensus 336 ~~~~~~~~~~ 345 (351)
T 3f3f_A 336 TYSNEFKCMS 345 (351)
T ss_dssp CTTSCEEEEE
T ss_pred CcCcchhhee
Confidence 9988776664
No 104
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.98 E-value=5e-28 Score=265.21 Aligned_cols=471 Identities=12% Similarity=0.080 Sum_probs=319.4
Q ss_pred cccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCC
Q psy18018 24 HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDN 101 (635)
Q Consensus 24 h~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~ 101 (635)
+...+ ++.+|| | +.||..+. ..+.+|+..+++ .+.+.+|.+.+ .+++|| |++||.++.+.
T Consensus 13 ~~~~~-~~~~~S----~--~~iaf~~~---------~~l~~~~~~gg~-~~~lt~~~~~v-~~~~~SPDG~~la~~s~~~ 74 (1045)
T 1k32_A 13 MPNLL-LNPDIH----G--DRIIFVCC---------DDLWEHDLKSGS-TRKIVSNLGVI-NNARFFPDGRKIAIRVMRG 74 (1045)
T ss_dssp CCCCC-EEEEEE----T--TEEEEEET---------TEEEEEETTTCC-EEEEECSSSEE-EEEEECTTSSEEEEEEEES
T ss_pred ccceE-eCcEEe----C--CEEEEEEC---------CcEEEEECCCCc-EEEeeeCCCcc-cCeEECCCCCEEEEEEeec
Confidence 34556 899999 5 46766653 245579988765 56788898887 999999 99999886541
Q ss_pred cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcce-------EEEEe--cCCEEEEEeCC------CeEEE
Q psy18018 102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAV-------RCVQY--DGKLVVSGAYD------YMVKI 166 (635)
Q Consensus 102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v-------~~l~~--~~~~l~s~~~d------g~v~i 166 (635)
. + ..+..|++||+.+++ ...+..|...+ .+++| ||+.+++++.+ ..|..
T Consensus 75 ~------~---------~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~ 138 (1045)
T 1k32_A 75 S------S---------LNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYR 138 (1045)
T ss_dssp T------T---------CCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEE
T ss_pred c------C---------CCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEE
Confidence 0 0 011234455555555 56677888888 89999 88877777754 45778
Q ss_pred EeCCCccceeeccccceeEEeeeccCCCEEEEEeC------------CCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCC
Q psy18018 167 WNPDTEECLHAELQETEVELSHGYALRSRIVSGSD------------DNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN 234 (635)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 234 (635)
|++.+++........ ... .. ++++ .+++++. +....+|....+.....+.+|...+.++.|+++
T Consensus 139 ~~~~~g~~~~l~~~~-~~~-~~-~spG-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 139 VENDGINFVPLNLGP-ATH-IL-FADG-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEGGGTEEEECCSCS-CSE-EE-EETT-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred EECCCCCeEEecCCC-cce-ee-eCCC-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 888777643322222 111 12 3335 7777642 334566654333445666899999999999866
Q ss_pred E-EEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccccc
Q psy18018 235 I-IISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCR 313 (635)
Q Consensus 235 ~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (635)
. +++++.|+.+++|.+........
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~------------------------------------------------------- 239 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLR------------------------------------------------------- 239 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCE-------------------------------------------------------
T ss_pred EEEEEEeccCceEEEEEeCCCCcce-------------------------------------------------------
Confidence 4 45667789999997643110000
Q ss_pred ceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC-----------C
Q psy18018 314 SWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG-----------H 382 (635)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-----------~ 382 (635)
...........+|+|+|++++.+ .++.|++|+..... +..+.. |
T Consensus 240 -----------------------~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~ 294 (1045)
T 1k32_A 240 -----------------------KHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIIS 294 (1045)
T ss_dssp -----------------------ECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEE
T ss_pred -----------------------EecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccccccccccc
Confidence 00000122345799999999887 48899999985443 335544 3
Q ss_pred CcceeEEEEe-C--CEEEEEeCCCcEEEEEccCCcce---------eEEEEEeeCCcEEEEEeCCCcEE-EEeCCCCcee
Q psy18018 383 QSLTSGMELR-N--NILVSGNADSTVKVWDIVSGTKK---------LMFRICLFDGVHVVSGSLDTSIR-VWEAESGNLR 449 (635)
Q Consensus 383 ~~~v~~l~~~-~--~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~ 449 (635)
...+.+++|+ + ..+++++ ++.+.+|++..+... .....++ +|+.++.++.++.+. +|++.+++..
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~ 372 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE 372 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence 3468888887 4 4677666 889999998766432 2223366 889999999888898 9999877654
Q ss_pred eeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC------
Q psy18018 450 HTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG------ 519 (635)
Q Consensus 450 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~------ 519 (635)
. +.+|...+..+++ ++++|++++.++.|++||+.+++....... |...+.+++| ||++|++++.++
T Consensus 373 ~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 373 K-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp E-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred E-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccC
Confidence 4 4477778888777 567999999999999999999988777655 6677777777 789998887654
Q ss_pred ----cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce-------EEee
Q psy18018 520 ----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF-------IRNL 588 (635)
Q Consensus 520 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~ 588 (635)
.|++||+.+++ ...+.. |...+..++|+|||++|++++.++...+|+...... +..+
T Consensus 449 ~~~~~i~l~d~~~g~-~~~l~~-----------~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK-IFAATT-----------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 516 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECSC-----------SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred CCCCeEEEEECCCCc-EEEeeC-----------CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence 89999999876 333322 455677899999999999999888888887543322 1000
Q ss_pred --------------------------e-----eccCCCCCceEEEEEeCCCCeEEEE-----------ccCCCeeEeEEE
Q psy18018 589 --------------------------V-----SLDSGGSGGVVWRIRASETKLVCAV-----------GSRNGTEETKLL 626 (635)
Q Consensus 589 --------------------------~-----~~~~~~~~~~i~~l~~s~d~~~l~~-----------~~~dg~~~~~l~ 626 (635)
. ......+.+.+..++|+|||+++++ .+.++. .++|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~--~~l~ 594 (1045)
T 1k32_A 517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK--GVLL 594 (1045)
T ss_dssp ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC--EEEE
T ss_pred EeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC--ceEE
Confidence 0 0001235577899999999998886 122332 5688
Q ss_pred EEeeec
Q psy18018 627 VLDFDV 632 (635)
Q Consensus 627 ~~d~~~ 632 (635)
.||+..
T Consensus 595 ~~d~~~ 600 (1045)
T 1k32_A 595 KYDVKT 600 (1045)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 887643
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.2e-30 Score=249.09 Aligned_cols=245 Identities=19% Similarity=0.234 Sum_probs=187.4
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEcc--CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
...++|+|++++|++|+.||.|++|++. +++.+..+.+|...|.+++|++.
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------------------- 66 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--------------------------- 66 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG---------------------------
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCC---------------------------
Confidence 3445578888888888888999999887 55677788899999999998610
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eEEec
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQTLS 493 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~ 493 (635)
.++++|++++.|+.|++||+.+++ ....+..|...|.++.++ ++++++++.|+.|++||+.++.. ...+.
T Consensus 67 --~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 67 --KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp --GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred --CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec
Confidence 114445555555555666655554 566777899999999984 66999999999999999988743 33444
Q ss_pred CCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 494 GRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 494 ~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
. |...|.+++|+ +.++++++.|+.|++||++++........ ....|...|.+++|
T Consensus 145 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 145 A---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAW 214 (379)
T ss_dssp C---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEE
T ss_pred C---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-------EEecccCcEeEEEE
Confidence 4 88899999993 68999999999999999987653322211 12247889999999
Q ss_pred cCC---CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 559 QFN---SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 559 s~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
+|+ +++|++++.||.|++||+.+++............+...|++++|+|+|++|++++.||. +++|.++
T Consensus 215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--i~iw~~~ 286 (379)
T 3jrp_A 215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK--VTLWKEN 286 (379)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS--EEEEEEE
T ss_pred CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc--EEEEeCC
Confidence 999 99999999999999999998752222222222458889999999999999999999998 5555554
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.9e-30 Score=245.10 Aligned_cols=298 Identities=14% Similarity=0.146 Sum_probs=208.6
Q ss_pred CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCC----CCceeeccCcceEEEEEEc--
Q psy18018 17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIK----DPKVLKGHDDHVITCLQFS-- 90 (635)
Q Consensus 17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~----~~~~l~~h~~~vi~~~~~s-- 90 (635)
.++.+.||.+.| +|++|+ |+|++||+++.++ .+.+||..++. ....+.+|...| ++++|+
T Consensus 3 ~~~~~~gH~~~v-~~~~~~----~~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 68 (351)
T 3f3f_A 3 MQPFDSGHDDLV-HDVVYD----FYGRHVATCSSDQ--------HIKVFKLDKDTSNWELSDSWRAHDSSI-VAIDWASP 68 (351)
T ss_dssp CCCEECCCSSCE-EEEEEC----SSSSEEEEEETTS--------EEEEEEECSSSCCEEEEEEEECCSSCE-EEEEECCG
T ss_pred ccccCcccccce-eEEEEc----CCCCEEEEeeCCC--------eEEEEECCCCCCcceecceeccCCCcE-EEEEEcCC
Confidence 357889999998 999999 9999999998654 44569998763 556778999988 999997
Q ss_pred --CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--c--CCEEEEEeCCCeE
Q psy18018 91 --GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--D--GKLVVSGAYDYMV 164 (635)
Q Consensus 91 --~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~--~~~l~s~~~dg~v 164 (635)
+++|++++.|+.|++||+.+++.. . .....+++..+.+|...|.+++| + +.+|++++.||.|
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~-------~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEE-------C-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCT-------T-----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred CCCCEEEEEcCCCeEEEEecCCCccc-------c-----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 689999999999999998865410 0 00111567788899999999999 5 8999999999999
Q ss_pred EEEeCCCccceeeccc-------------c-ceeEEeeeccC---CCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCCC
Q psy18018 165 KIWNPDTEECLHAELQ-------------E-TEVELSHGYAL---RSRIVSGSDDNTLKVWSATTGKC--LRTLIGHTGG 225 (635)
Q Consensus 165 ~iwd~~~~~~~~~~~~-------------~-~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~ 225 (635)
++||+.+++.+..+.. + ..+......+. +..+++++.++.+.+|+...++. +..+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 9999998876544321 1 22233333333 78999999999999888887765 6778899999
Q ss_pred eEEEEee--C----CEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018 226 VWSSQMA--G----NIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF 299 (635)
Q Consensus 226 v~~~~~~--~----~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (635)
|.+++|+ + ++|++++.||.|++||+...........
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------- 258 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE-------------------------------------- 258 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------------
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC--------------------------------------
Confidence 9999995 3 5899999999999999876422110000
Q ss_pred cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc----EEEEecCCCeEEEEEccCCce
Q psy18018 300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV----HVVSGSLDTSIRVWEAESGNL 375 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~l~~~~~dg~i~v~~~~~~~~ 375 (635)
..........++... ....+.....+.+|+....+.
T Consensus 259 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 259 ----------------------------------------SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp ------------------------------------------------------------------------CCSEEEEE
T ss_pred ----------------------------------------cccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 000000000111111 122333445667777777788
Q ss_pred EEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 376 RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 376 ~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
+..+.+|...|.+++|+ +++|++++.||.|++|++.+++....
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 88999999999999997 55777777888888877776654443
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-31 Score=256.33 Aligned_cols=308 Identities=12% Similarity=0.043 Sum_probs=218.8
Q ss_pred cceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEcCCEEEEeeCCCcEEE
Q psy18018 26 DHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKV 105 (635)
Q Consensus 26 ~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s~~~l~s~~~d~~v~v 105 (635)
++| .+|+|| |||+++|+++.++.+. |.+.+ +.+++|...+ .+++|+..- .++.+.+
T Consensus 16 ~~v-~sv~~S----pDG~~iASas~D~TV~----------d~~~~---~~l~gh~~~v-~~V~FsPdg-----~~~~~~~ 71 (588)
T 2j04_A 16 DWK-NNLTWA----RDGTLYLTTFPDISIG----------QPKYA---KDINCNSKNL-FHVKEFPLE-----FENKLDF 71 (588)
T ss_dssp SSS-CCEEEC----TTSCEEEECSSSEEEE----------EECCC---SCCSSBGGGT-EEEEEECCC-----CCCTTTT
T ss_pred ccE-EEEEEC----CCCCEEEEEcCCceee----------ccccc---ceecCCCccE-EEEEECCCC-----CcceEEE
Confidence 777 899999 9999999999875543 44444 4457999999 899998211 3444333
Q ss_pred EECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccc-
Q psy18018 106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQET- 182 (635)
Q Consensus 106 Wd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 182 (635)
|+.+ +.....+ .|...|.+++| ||++||+++.||+|++||.+. .+..+.++.
T Consensus 72 ~~~~----------------------~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~ 126 (588)
T 2j04_A 72 ELAQ----------------------QNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGN 126 (588)
T ss_dssp SCCC----------------------SSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSC
T ss_pred EeCC----------------------CceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCc
Confidence 3322 1112222 56889999999 999999999999999999655 444444222
Q ss_pred ----eeEEeeeccCCCEEEEEeCCCcEEEEECCCCe-------EEEEE----eCCCCCeEEEEeeCCEEEEeeCceeEEE
Q psy18018 183 ----EVELSHGYALRSRIVSGSDDNTLKVWSATTGK-------CLRTL----IGHTGGVWSSQMAGNIIISGSTDRTLKG 247 (635)
Q Consensus 183 ----~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~----~~h~~~v~~~~~~~~~l~s~~~dg~i~~ 247 (635)
.+....+.++++.|++|+.||+|++||+.++. .+.++ .+|...|.+++
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa----------------- 189 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV----------------- 189 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-----------------
T ss_pred cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-----------------
Confidence 36666777888999999999999999998875 35666 55666777766
Q ss_pred ecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhh
Q psy18018 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWRE 327 (635)
Q Consensus 248 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (635)
T Consensus 190 -------------------------------------------------------------------------------- 189 (588)
T 2j04_A 190 -------------------------------------------------------------------------------- 189 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCce---EEee-eCCCcceeEEEEeCCEEEEEeCCC
Q psy18018 328 KCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL---RHTL-MGHQSLTSGMELRNNILVSGNADS 403 (635)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~---~~~~-~~~~~~v~~l~~~~~~l~s~~~dg 403 (635)
|+|+| +++++.|+.|++|++.++.. ...+ .+|...|.+++|+++.+++++
T Consensus 190 ---------------------wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~--- 243 (588)
T 2j04_A 190 ---------------------WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC--- 243 (588)
T ss_dssp ---------------------EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC---
T ss_pred ---------------------EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe---
Confidence 66666 66666677777777766552 3455 478889999998755554443
Q ss_pred cEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCC--EEEEEeCCCcEE
Q psy18018 404 TVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN--ILVSGNADSTVK 479 (635)
Q Consensus 404 ~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~ 479 (635)
+++|++||+.+++......+|...+..+.+ +++ .+++++.||+ +
T Consensus 244 -------------------------------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-k 291 (588)
T 2j04_A 244 -------------------------------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-K 291 (588)
T ss_dssp -------------------------------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-E
T ss_pred -------------------------------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-E
Confidence 355666666666553444479999998888 544 7999999999 9
Q ss_pred EEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceeccccc
Q psy18018 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559 (635)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 559 (635)
+|.... +. +..++..+++. |+++++|+...+. ...+. +...|.+++||
T Consensus 292 lw~~d~----------------~~-~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~------------~~~~I~~va~S 339 (588)
T 2j04_A 292 VLLEDE----------------LH-VTADNIIAPYL--EKKFKKWSTIWNE-FNNYE------------TTLVIHGISLS 339 (588)
T ss_dssp EEESSS----------------EE-EECCCSSHHHH--HHHHHHTTTTTTS-SSSSC------------CEEEEEEEEEC
T ss_pred EEeecc----------------EE-ECCCceEEEEc--CCEEEEEECCCCc-eeeec------------cceEEEEEEEC
Confidence 999771 22 45566666664 8999999976544 22221 24468999999
Q ss_pred CCCeEEEEec
Q psy18018 560 FNSRFVITSS 569 (635)
Q Consensus 560 ~~~~~l~~~~ 569 (635)
|||+.+|+++
T Consensus 340 PdG~~lA~~~ 349 (588)
T 2j04_A 340 PDGYSIAIVY 349 (588)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999999885
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=242.29 Aligned_cols=265 Identities=18% Similarity=0.232 Sum_probs=195.0
Q ss_pred CCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEE
Q psy18018 70 IKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC 147 (635)
Q Consensus 70 ~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~ 147 (635)
|+++..+.+|.+.| ++++|+ +++||+++.||.|++||+..+ +++.+..+.+|.++|++
T Consensus 1 G~~~~~~~~h~~~v-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~~h~~~v~~ 60 (379)
T 3jrp_A 1 GSMVVIANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWR 60 (379)
T ss_dssp ----CCEEECCCCE-EEEEECSSSSEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEEE
T ss_pred CCccEEecCCcccE-EEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------cceeeeEecCCCCcEEE
Confidence 35678899999998 999999 899999999999999997632 34667788899999999
Q ss_pred EEe--c--CCEEEEEeCCCeEEEEeCCCcc--ceeeccccceeEE-eeeccC--CCEEEEEeCCCcEEEEECCCCe--EE
Q psy18018 148 VQY--D--GKLVVSGAYDYMVKIWNPDTEE--CLHAELQETEVEL-SHGYAL--RSRIVSGSDDNTLKVWSATTGK--CL 216 (635)
Q Consensus 148 l~~--~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~-~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~ 216 (635)
++| + +++|++++.||.|++||+.+++ .+..+..+..... ....+. +..+++++.|+.|++||+.++. ..
T Consensus 61 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp EEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred EEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee
Confidence 999 4 8999999999999999999886 5555554544444 444455 6899999999999999998873 44
Q ss_pred EEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEE
Q psy18018 217 RTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYV 296 (635)
Q Consensus 217 ~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (635)
..+.+|...|.++.|........+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~-------------------------------------------------------- 164 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDG-------------------------------------------------------- 164 (379)
T ss_dssp EEEECCTTCEEEEEECCCC-------------------------------------------------------------
T ss_pred EEecCCCCceEEEEEcCccccccc--------------------------------------------------------
Confidence 566789999998887532111000
Q ss_pred EeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCc--
Q psy18018 297 LTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-- 374 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-- 374 (635)
.....+++.++++++.||.|++||+.++.
T Consensus 165 -------------------------------------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 165 -------------------------------------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp ------------------------------------------------------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred -------------------------------------------------cccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 00124578889999999999999988664
Q ss_pred --eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC---CcEEEEEeCCCcEEEEeCCCCc--
Q psy18018 375 --LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD---GVHVVSGSLDTSIRVWEAESGN-- 447 (635)
Q Consensus 375 --~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~-- 447 (635)
....+.+|...|.+++|+ |+ +++|++++.|+.|++||+.++.
T Consensus 196 ~~~~~~~~~h~~~v~~~~~s-------------------------------p~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWS-------------------------------PTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp EEEEEEECCCSSCEEEEEEC-------------------------------CCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred eeeEEEEecccCcEeEEEEC-------------------------------CCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 446778899999999886 33 4455555556666666655542
Q ss_pred ---eeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeE
Q psy18018 448 ---LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQ 490 (635)
Q Consensus 448 ---~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~ 490 (635)
.......|...+.++++ ++++|++++.||.|++|++.......
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 12222347888998888 46699999999999999998654433
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.3e-30 Score=250.43 Aligned_cols=228 Identities=19% Similarity=0.265 Sum_probs=170.1
Q ss_pred cCcEEEEecCCCeEEEEEccCC-------ceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESG-------NLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF 424 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~-------~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 424 (635)
++.+|++|+.||.|++|++.++ +.+..+.+|...|.+++|+ |
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------------------------------p 141 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH-------------------------------P 141 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC-------------------------------S
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEEC-------------------------------c
Confidence 3344444444444444444433 4566788899999999986 3
Q ss_pred CC-cEEEEEeCCCcEEEEeCCCCceeeee--ccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEe-cCCCcc
Q psy18018 425 DG-VHVVSGSLDTSIRVWEAESGNLRHTL--MGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTL-SGRNKH 498 (635)
Q Consensus 425 ~~-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 498 (635)
++ ..|++++.|+.|++||+.+++.+..+ .+|...|.++++ ++++|++++.|+.|++||+++++.+..+ .. |
T Consensus 142 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~ 218 (402)
T 2aq5_A 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP---H 218 (402)
T ss_dssp SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS---S
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC---C
Confidence 43 46677777777888888888888888 789999999998 4679999999999999999999988888 45 5
Q ss_pred ccc-EEEEEe--cCCEEEEE---eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE-ecCC
Q psy18018 499 QSA-VTCLQF--NSRFVITS---SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT-SSDD 571 (635)
Q Consensus 499 ~~~-v~~~~~--~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d 571 (635)
... +.++.| ++++|+++ +.|+.|++||+++++...... ...+...+.+++|+|++++|++ ++.|
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ---------ELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE---------ECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE---------eccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 444 777777 68899998 799999999999876421111 1125678999999999999864 5679
Q ss_pred CeEEEEeCCCCce-EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 572 GTVKLWDVKTGEF-IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 572 ~~v~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
+.|++||+.+++. +..+..+ .+..+|.+++|+|++.++++++ +. +++|.++
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~~--~~--~~~~~l~ 341 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNKC--EI--ARFYKLH 341 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGGT--EE--EEEEEEE
T ss_pred CeEEEEEecCCCcceEeeccc---ccCCcccceEEecccccceecc--ee--EEEEEcC
Confidence 9999999999884 4444332 3568899999999999987644 33 5566654
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.4e-29 Score=238.33 Aligned_cols=287 Identities=11% Similarity=0.097 Sum_probs=199.8
Q ss_pred EEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE-EEEeCC
Q psy18018 126 VWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI-VSGSDD 202 (635)
Q Consensus 126 vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d 202 (635)
+|++.+.+++..+.+|..+|++++| |+++|++|+.++ +++||+.+++......... ..........+.+ ++++.|
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCc
Confidence 4566677778888899999999999 899999998775 7899999887665544332 2222333344444 678888
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccce-eeeccccccccCccceeeeeeeeccccc
Q psy18018 203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAER-ILAIGQLIDSCEPTQIRHMMQLIEPQFQ 281 (635)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (635)
+.|++||..+++++..+. |...|.++.++++.++.+. |+.|++||+.+. .... .
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~-~---------------------- 135 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRIT-D---------------------- 135 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSS-C----------------------
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeE-E----------------------
Confidence 999999999999999887 6779999999988877764 788999998764 1100 0
Q ss_pred cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE--e
Q psy18018 282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS--G 359 (635)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~ 359 (635)
... ...+.++++ .+++. |
T Consensus 136 ---------------------------------------------------------~~~-~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 136 ---------------------------------------------------------DIR-FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp ---------------------------------------------------------CEE-EEEEEEEET--TEEEEEES
T ss_pred ---------------------------------------------------------ecc-CCceEEEEc--cEEEEeCC
Confidence 000 112234555 45555 6
Q ss_pred cCCCeEEEEEccCCc----------------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 360 SLDTSIRVWEAESGN----------------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 360 ~~dg~i~v~~~~~~~----------------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
+.+|.|++||+.++. .+..+.+|...|.+++|+
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s------------------------------- 204 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN------------------------------- 204 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-------------------------------
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-------------------------------
Confidence 889999999998765 267788899999988876
Q ss_pred eCCcEEEEEeCCCc-EEEEeCCCCceeeeec-c-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeE--Eec---
Q psy18018 424 FDGVHVVSGSLDTS-IRVWEAESGNLRHTLM-G-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQ--TLS--- 493 (635)
Q Consensus 424 ~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--- 493 (635)
|++++|++++.|++ |++||+.+++.+..+. + |...|.+++|+ +++|++++.|++|++||+..+.... .+.
T Consensus 205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp TTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 67778888888887 8899999999999888 5 99999999985 6799999999999999997653211 110
Q ss_pred ---------------CCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018 494 ---------------GRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGE 530 (635)
Q Consensus 494 ---------------~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~ 530 (635)
...........++| +++++++++.||.+++|++..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00111122345666 68899999999999999987654
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=250.34 Aligned_cols=325 Identities=16% Similarity=0.193 Sum_probs=202.2
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCcc-----------ceeeccccc------------e-eEEeeeccCC
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEE-----------CLHAELQET------------E-VELSHGYALR 193 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~-~~~~~~~~~~ 193 (635)
.|.+.|++++| ++++||+|+.||.|++||+.+++ ....+..+. . +....+.+.+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 46889999999 89999999999999999999876 344555553 3 3333444444
Q ss_pred --CEEEEEeCCCcEEEEECCCCeEEEEE---eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018 194 --SRIVSGSDDNTLKVWSATTGKCLRTL---IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268 (635)
Q Consensus 194 --~~l~~~~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 268 (635)
..+++++.|+.|++||+.+++..... ..+.+.+.... .-..+.+-.
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~~------------------- 156 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPT----------TVTTLRVPV------------------- 156 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CC----------CCCSCCCCE-------------------
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcc----------cccceEecc-------------------
Confidence 68999999999999998765543221 11111111000 000000000
Q ss_pred eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEE
Q psy18018 269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348 (635)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (635)
.. .. + ...... ........+......++
T Consensus 157 ~~-~~-----------------~---~~~~~~-------------------------------~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 157 FR-PM-----------------D---LMVEAS-------------------------------PRRIFANAHTYHINSIS 184 (447)
T ss_dssp EE-EE-----------------E---EEEEEE-------------------------------EEEEECSCCSSCCCEEE
T ss_pred cc-ch-----------------h---eeeecc-------------------------------ceEEeccCCCcceEEEE
Confidence 00 00 0 000000 00000112334566788
Q ss_pred EEecCcEEEEecCCCeEEEEEccC-CceEE-------eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAES-GNLRH-------TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~-------~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 420 (635)
|+|++++|++| .|+.|++||+.+ ++... .+.+|...|.+++|+
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------------------- 235 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH---------------------------- 235 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC----------------------------
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC----------------------------
Confidence 99999999999 799999999984 33443 256788889999886
Q ss_pred EEeeCC-cEEEEEeCCCcEEEEeCCCCce----eeeeccCC------------ccEEEEEec--CCEEEEEeCCCcEEEE
Q psy18018 421 ICLFDG-VHVVSGSLDTSIRVWEAESGNL----RHTLMGHQ------------SLTSGMELR--NNILVSGNADSTVKVW 481 (635)
Q Consensus 421 ~~~~~~-~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~------------~~v~~~~~~--~~~l~s~~~dg~i~iw 481 (635)
|++ ++|++++.|+.|++||+++++. ...+.+|. ..|.+++++ +++|++++. +.|++|
T Consensus 236 ---p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 236 ---PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp ---SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred ---CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 233 3444444444444444444443 44555554 489999985 669999998 999999
Q ss_pred ECCC-CceeEEecCCCcccc------------cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeecccee------
Q psy18018 482 DIVS-GQCLQTLSGRNKHQS------------AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFI------ 540 (635)
Q Consensus 482 d~~~-~~~~~~~~~~~~~~~------------~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------ 540 (635)
|+.. ++++..+..+..... .+..++| ++++|++++.||.|++||+.+++.+........
T Consensus 312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 391 (447)
T 3dw8_B 312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTV 391 (447)
T ss_dssp ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCB
T ss_pred eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccc
Confidence 9997 888888876221111 1223555 789999999999999999999876532111000
Q ss_pred cC---------------ceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 541 LN---------------PFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 541 ~~---------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
.. ......+...|.+++|+|++++||+++.++ +++|.-
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 392 LKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 00 001123566789999999999999998876 888864
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-29 Score=245.73 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=218.1
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCc---eEEeeeC-------------------------------------
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN---LRHTLMG------------------------------------- 381 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~---~~~~~~~------------------------------------- 381 (635)
+...+++|+++|++++++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 566788899999966655 57899999999998 6555543
Q ss_pred -----------------CCcceeEEEEe--CCEE-EEEeCCCcEEEEEcc--CCcceeEE-----------EEEeeCCcE
Q psy18018 382 -----------------HQSLTSGMELR--NNIL-VSGNADSTVKVWDIV--SGTKKLMF-----------RICLFDGVH 428 (635)
Q Consensus 382 -----------------~~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~--~~~~~~~~-----------~~~~~~~~~ 428 (635)
|...|.+++|+ +.+| ++++.||.|++||+. +++....+ ..++|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999997 5565 899999999999998 66544433 237889999
Q ss_pred EEEEeCCCcEEEEeCCCCceee----eeccCCccEEEEEecC-----CEEEEEeCCCcEEEEECCCCceeEE-ecCCCcc
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRN-----NILVSGNADSTVKVWDIVSGQCLQT-LSGRNKH 498 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~ 498 (635)
|++++.++.+++|++.+++... .+.+|...|.++.+++ ++|++++.|+.|++||+.+++.+.. +.+ |
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG---H 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---C
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---C
Confidence 9999999999999998877554 7888999999998854 4999999999999999999988877 434 8
Q ss_pred cccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee--------------EEeccCceecccccCCCe
Q psy18018 499 QSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY--------------FLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 499 ~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~~~~ 563 (635)
...|.+++| ++++|++++.|+.|++||+.+++.+..+.......+.. .......|.+++|+|+++
T Consensus 241 ~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 241 KHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp SSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 889999999 69999999999999999999998877665321111100 012345789999999999
Q ss_pred EEEEec-CCCeEEEEeC--CCC---ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC----eeEeEEEEEeee
Q psy18018 564 FVITSS-DDGTVKLWDV--KTG---EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG----TEETKLLVLDFD 631 (635)
Q Consensus 564 ~l~~~~-~d~~v~iwd~--~~~---~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg----~~~~~l~~~d~~ 631 (635)
+|++++ .|+.|+|||+ .++ +.+..+ ..+ +.|.+++|+|++.++++++.+. .-.+.+|.++.+
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-----~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQII-----TFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEE-----ECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEe-----ccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999998 8999999999 666 555555 234 7899999999766666665431 122678877754
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.8e-27 Score=228.87 Aligned_cols=339 Identities=16% Similarity=0.121 Sum_probs=237.3
Q ss_pred EEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEE-EEEeCCCeEEEEeCCCccceeeccccceeEEeee
Q psy18018 113 CLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLV-VSGAYDYMVKIWNPDTEECLHAELQETEVELSHG 189 (635)
Q Consensus 113 ~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 189 (635)
.++++++.|+.|++||+++++.+..+.+|.. +.+++| +++++ ++++.|++|++||+.+++.+..+..+..+.....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 4567777777788888888888888887764 799999 78876 6777999999999999998888777776666666
Q ss_pred ccCCCEEEEE-eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccc
Q psy18018 190 YALRSRIVSG-SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQ 268 (635)
Q Consensus 190 ~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 268 (635)
.+++.+++++ ..++.|++||+.+++.+..+..|. .+.+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~---------------------------------------- 120 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLG---------------------------------------- 120 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEE----------------------------------------
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-Ccce----------------------------------------
Confidence 6677777554 467999999999988877665432 2232
Q ss_pred eeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEE
Q psy18018 269 IRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348 (635)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (635)
++
T Consensus 121 ------------------------------------------------------------------------------~~ 122 (391)
T 1l0q_A 121 ------------------------------------------------------------------------------LA 122 (391)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------EE
Confidence 33
Q ss_pred EEecCcEE-EEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018 349 FQFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV 427 (635)
Q Consensus 349 ~s~~~~~l-~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 427 (635)
++|+++.+ ++++.++.|++||+.+++.+..+..+. .+.+++++ |+++
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~-------------------------------~dg~ 170 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVT-------------------------------PDGT 170 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEEC-------------------------------TTSS
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEEC-------------------------------CCCC
Confidence 77777766 677778899999998888777776553 33555544 4555
Q ss_pred EE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeEEecCCCccccc
Q psy18018 428 HV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN---ADSTVKVWDIVSGQCLQTLSGRNKHQSA 501 (635)
Q Consensus 428 ~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 501 (635)
++ ++++.++.|++||+.+++....+. +...+.++.+ +++++++++ .++.|++||+.+++.+..+.. +. .
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~-~ 245 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GP-D 245 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CS-S
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CC-C
Confidence 55 455667778888888777766665 3456677777 466788777 689999999999998888875 33 4
Q ss_pred EEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeeeeccceecCc----eeEEeccCceecccccCCC----------eE
Q psy18018 502 VTCLQF--NSRFV-ITSSDDGTVKLWDVKTGEFSTPLMSSFILNP----FYFLIYSQPLLCPHLQFNS----------RF 564 (635)
Q Consensus 502 v~~~~~--~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~----------~~ 564 (635)
+.++++ +++++ ++++.|+.|++||+.+++....+..+..... ..............|+.+. ..
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~ 325 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ 325 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence 677887 57766 6778899999999999988777654321110 0000001111222333322 45
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc---cCCC
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG---SRNG 619 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~---~~dg 619 (635)
+...+.|...++||+.+|.... +..+ ...|+++|.|.+.. +.+|
T Consensus 326 ~~~~~~~~~~~~W~~~~g~~~~---------~~~~--~~~~~~~g~y~~~~~~~~~~g 372 (391)
T 1l0q_A 326 FTDLSKDATEWKWDFGDGSSSK---------KQNP--THTYSETGIYTVRLTVSNSNG 372 (391)
T ss_dssp EEECCBSCSEEEEECSSSCEEC---------SSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred EEeCCCCceEEEEECCCCcccC---------cCCC--eEEeCCCceEEEEEEEECCCC
Confidence 6667778999999999887421 1122 35799999977654 3666
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2e-29 Score=244.97 Aligned_cols=252 Identities=12% Similarity=0.117 Sum_probs=177.3
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCCceE-----EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLR-----HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 420 (635)
...+++++.++++++.|++|++||..+++.. ..+.+|...|.+++|++..- .+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~----~~------------------ 151 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS----AD------------------ 151 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC----TT------------------
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc----cc------------------
Confidence 3456778899999999999999999987653 34678999999999974110 00
Q ss_pred EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecC---
Q psy18018 421 ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSG--- 494 (635)
Q Consensus 421 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 494 (635)
...++++|++++.|++|++||+.++.....+.+|...+.+++|++ ++|++++.|++|++||+.+++.......
T Consensus 152 -~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 152 -NRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp -CSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred -cCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 013667888889999999999988888888888999999999964 3799999999999999988765433221
Q ss_pred -------------------CCcccccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceec-------Ccee
Q psy18018 495 -------------------RNKHQSAVTCLQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL-------NPFY 545 (635)
Q Consensus 495 -------------------~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~ 545 (635)
...|...+.++.| +++.+++++.|+++++||+.+++....+..+... ....
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 1235667777877 6899999999999999999987765554332111 0111
Q ss_pred EEeccCceecccccC--CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEe
Q psy18018 546 FLIYSQPLLCPHLQF--NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEET 623 (635)
Q Consensus 546 ~~~~~~~v~~~~~s~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~ 623 (635)
............++| ++.++++|+.||+|++||+.+++.+..+ ..|..+|.+|+|+|||++||+++++|.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMPIVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 111222233344444 5567888999999999999999988776 357789999999999999999999996444
Q ss_pred EE
Q psy18018 624 KL 625 (635)
Q Consensus 624 ~l 625 (635)
+|
T Consensus 386 rL 387 (393)
T 4gq1_A 386 RL 387 (393)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=234.75 Aligned_cols=269 Identities=12% Similarity=0.064 Sum_probs=200.7
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccce
Q psy18018 190 YALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQI 269 (635)
Q Consensus 190 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 269 (635)
+.++.++++|+.||.|++||+.+++.+..+. ...|.++.+... +++++.|+++++|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~------------------ 103 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPG------------------ 103 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETT------------------
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEcc------------------
Confidence 3456789999999999999999998888776 456666666666 8899999999999742
Q ss_pred eeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEE
Q psy18018 270 RHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGF 349 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (635)
T Consensus 104 -------------------------------------------------------------------------------- 103 (343)
T 3lrv_A 104 -------------------------------------------------------------------------------- 103 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCcEEEEecCCCeEEEEEccCCceEEeee-CCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 350 QFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-GHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 350 s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
+.+.+|+..+++.+..+. +|...|.++++++. .++++
T Consensus 104 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------~~~~~ 141 (343)
T 3lrv_A 104 -------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNE-----------------------------VNTEY 141 (343)
T ss_dssp -------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC--------------------------------CCE
T ss_pred -------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCC-----------------------------CCCCE
Confidence 246678888877665554 67778888887520 05667
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee-EEecCCCcccccEEE
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL-QTLSGRNKHQSAVTC 504 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~ 504 (635)
+++++.|+.|++||+++++....... |...+.++++ ++.++++|+.||.|++||+++++.+ ..+.. .|...|++
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~ 219 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKE 219 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEE
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEE
Confidence 77777778888888877777665543 4557888887 4679999999999999999999877 56653 37889999
Q ss_pred EEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCce--ecccccCCCeEEEEecC-CCeEEEEeC
Q psy18018 505 LQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL--LCPHLQFNSRFVITSSD-DGTVKLWDV 579 (635)
Q Consensus 505 ~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-d~~v~iwd~ 579 (635)
++| ++.+|++++ |+.|++||+++++....+.... .|...+ .+++|+|++++|++++. |+.++||++
T Consensus 220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 220 VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT--------IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB--------C-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc--------cccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 999 688999999 4599999999987655443210 012223 46999999999999888 999999999
Q ss_pred CCCceEEeeeeccCCCCCceEEEEEeCC---CCeEEEEccCCCee
Q psy18018 580 KTGEFIRNLVSLDSGGSGGVVWRIRASE---TKLVCAVGSRNGTE 621 (635)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~---d~~~l~~~~~dg~~ 621 (635)
.+....... .++..++|++ +++.|++++.||.+
T Consensus 291 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~ 326 (343)
T 3lrv_A 291 DKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGI 326 (343)
T ss_dssp CTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEE
T ss_pred cccccceEe---------cCceeEecCccccccceeEEEecCCce
Confidence 766533222 4677888888 88888888888873
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.3e-27 Score=215.76 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=186.2
Q ss_pred EEECCCCcEEEEEeeCCCcEEEEeCCCC---eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeecc
Q psy18018 105 VWSATTGKCLLVSGSRDATLRVWHIESG---ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAEL 179 (635)
Q Consensus 105 vWd~~~~~~ll~~~~~dg~i~vwd~~~~---~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 179 (635)
-|.....+..-+.......|++|+..++ ++++++..|+.+|..+.| |-..|+..... ++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~---------- 109 (356)
T 2w18_A 46 FWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------NL---------- 109 (356)
T ss_dssp EEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------SS----------
T ss_pred eeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------cc----------
Confidence 4555555555555555666777776666 889999999999999999 33333322210 01
Q ss_pred ccceeEEeeeccC----CCEEEEEeCCCcEEEEECCCCeEEEE-EeCCCCCeEEEEeeCCEEEEeeCceeEEEecccc-e
Q psy18018 180 QETEVELSHGYAL----RSRIVSGSDDNTLKVWSATTGKCLRT-LIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAE-R 253 (635)
Q Consensus 180 ~~~~~~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~-~ 253 (635)
....+....+.++ +..+++++.+ +.+|++.+++.+.+ ..+|.+ .|++|++.. +
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~-------------------~V~~~~~s~dG 168 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ-------------------QVEVMTFAEDG 168 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC-------------------EEEEEEECTTS
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC-------------------cEEEEEECCCC
Confidence 1122333444444 5567776644 88899888877766 345554 445554422 1
Q ss_pred eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA 333 (635)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (635)
....
T Consensus 169 ~~~~---------------------------------------------------------------------------- 172 (356)
T 2w18_A 169 GGKE---------------------------------------------------------------------------- 172 (356)
T ss_dssp CEEE----------------------------------------------------------------------------
T ss_pred ceee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhccccccCCCceEEEEe---cCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeCCCcE
Q psy18018 334 TLHRNKKTHVPDLFGFQF---DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNADSTV 405 (635)
Q Consensus 334 ~~~~~~~~~~~~~~~~s~---~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~dg~i 405 (635)
....+.....+++|+| ++..|++++.|++|++||+.++++++++.+|.. .+.+++|+ +.++++++.+..
T Consensus 173 --s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~- 249 (356)
T 2w18_A 173 --NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA- 249 (356)
T ss_dssp --EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred --eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-
Confidence 0012334556678888 779999999999999999999999999987644 56666776 446666654432
Q ss_pred EEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-----ccCCccEEEEEecCCEEEEEeCCCcEEE
Q psy18018 406 KVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-----MGHQSLTSGMELRNNILVSGNADSTVKV 480 (635)
Q Consensus 406 ~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~~~dg~i~i 480 (635)
+| .+++|+.|+++++||..+++.+..+ .+|.....+..+++.++++++.|++|+|
T Consensus 250 -~w-------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI 309 (356)
T 2w18_A 250 -KE-------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI 309 (356)
T ss_dssp ----------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred -cc-------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence 23 3678899999999999999887765 4677666666777889999999999999
Q ss_pred EECCCCceeEEecCCCcccccE-EEEEe--cCCEEEEEeCCCcEEEEEC
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAV-TCLQF--NSRFVITSSDDGTVKLWDV 526 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v-~~~~~--~~~~l~~~~~d~~i~vwd~ 526 (635)
||+.+++++..+.+ |...+ .+++| |+++|++|+.|++|+|||+
T Consensus 310 WDl~tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLLGQCTALLPP---VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTTCSEEEEECC---C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCcEEEEecC---CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999987 65543 34677 7899999999999999995
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-28 Score=230.86 Aligned_cols=185 Identities=11% Similarity=0.006 Sum_probs=136.1
Q ss_pred EEe--cCcEEEEecCCCeEEEEEccCCceEEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018 349 FQF--DGVHVVSGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425 (635)
Q Consensus 349 ~s~--~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 425 (635)
++| +++++++++.||.|++||+.+++....... |...+.+++|+ |+
T Consensus 133 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-------------------------------pd 181 (343)
T 3lrv_A 133 GHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-------------------------------KD 181 (343)
T ss_dssp CCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-------------------------------TT
T ss_pred cCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-------------------------------CC
Confidence 555 667788888888888888887777655533 44467777765 66
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcee-eeecc-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018 426 GVHVVSGSLDTSIRVWEAESGNLR-HTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA 501 (635)
Q Consensus 426 ~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 501 (635)
+.++++|+.|+.|++||+++++.. ..+.. |...|.+++|+ +.+|++++ |+.|++||+++++....+.....+...
T Consensus 182 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~ 260 (343)
T 3lrv_A 182 SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFK 260 (343)
T ss_dssp SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC----
T ss_pred CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccc
Confidence 777888888888888888888877 77887 99999999985 56999999 459999999998776655542223333
Q ss_pred E--EEEEe--cCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC---CCeEEEEecCCCe
Q psy18018 502 V--TCLQF--NSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF---NSRFVITSSDDGT 573 (635)
Q Consensus 502 v--~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~ 573 (635)
+ .+++| ++++|++++. |+.+++|++.+....... .++..++|+| +.+.+++++.|+.
T Consensus 261 ~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~d~~ 325 (343)
T 3lrv_A 261 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---------------DEESALCLQSDTADFTDMDVVCGDGG 325 (343)
T ss_dssp -CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---------------EEEEECCC----CCCCEEEEEEETTE
T ss_pred ccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---------------cCceeEecCccccccceeEEEecCCc
Confidence 3 35777 6899999998 999999999765422111 3567788888 8899999999999
Q ss_pred EEEEeCC
Q psy18018 574 VKLWDVK 580 (635)
Q Consensus 574 v~iwd~~ 580 (635)
+.++-..
T Consensus 326 ~~~~~~~ 332 (343)
T 3lrv_A 326 IAAILKT 332 (343)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9988644
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=5.5e-27 Score=232.47 Aligned_cols=225 Identities=11% Similarity=0.064 Sum_probs=174.1
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
+++++..+++++.++.|++||+.+++.+..+..|...+.+++++ |++++
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 225 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD-------------------------------PIRDL 225 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE-------------------------------TTTTE
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc-------------------------------CCCCE
Confidence 66677788888888999999998888888888888888888876 34444
Q ss_pred EE-EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEe--------CCCcEEEEECCCCceeEEecCCCc
Q psy18018 429 VV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGN--------ADSTVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 429 l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~ 497 (635)
++ +++.++.|++||+.+++....+..+. .+.++.+ +++.+++++ .|+.|++||+.+++.+..+.
T Consensus 226 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---- 300 (433)
T 3bws_A 226 VYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---- 300 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----
T ss_pred EEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----
Confidence 43 33356777778877777777666543 4677777 466888887 58899999999988777764
Q ss_pred ccccEEEEEe--cCC-EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC----
Q psy18018 498 HQSAVTCLQF--NSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD---- 570 (635)
Q Consensus 498 ~~~~v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---- 570 (635)
+...+.+++| +++ ++++++.|+.|++||+.+++....+. +...+.+++|+|++++|++++.
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP------------VFDKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE------------CSSSEEEEEECTTSSEEEEEECCCCC
T ss_pred CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec------------CCCCCCeEEEcCCCCEEEEEecCCCc
Confidence 5567888888 465 55677899999999999887655442 4567889999999999888876
Q ss_pred -----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccC-CCeeEeEEEEEeee
Q psy18018 571 -----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR-NGTEETKLLVLDFD 631 (635)
Q Consensus 571 -----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~-dg~~~~~l~~~d~~ 631 (635)
||.|++||+.+++.+..+. . ...+.+++|+|||++|++++. |+. +.+||++
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-----~-~~~~~~~~~s~dg~~l~~~~~~d~~----i~v~~~~ 431 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-----A-GNQPTGLDVSPDNRYLVISDFLDHQ----IRVYRRD 431 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEEE-----C-SSSEEEEEECTTSCEEEEEETTTTE----EEEEEET
T ss_pred cccccccccccceEEEEEECCCCcEEEEec-----C-CCCCceEEEcCCCCEEEEEECCCCe----EEEEEec
Confidence 5799999999999888773 2 456899999999999988765 887 4444443
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.6e-26 Score=225.76 Aligned_cols=269 Identities=13% Similarity=0.147 Sum_probs=205.3
Q ss_pred CEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe
Q psy18018 153 KLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRI-VSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM 231 (635)
Q Consensus 153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 231 (635)
..+++++.|+.|++||+.+++.+..+..+..+......+++.++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~- 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA- 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE-
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE-
Confidence 46888999999999999999988887777666666666667766 566689999999999999888776543 444443
Q ss_pred eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018 232 AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT 311 (635)
Q Consensus 232 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (635)
T Consensus 81 -------------------------------------------------------------------------------- 80 (391)
T 1l0q_A 81 -------------------------------------------------------------------------------- 80 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEE
Q psy18018 312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGME 390 (635)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~ 390 (635)
++|++++++ ++..++.|++||+.+++.+..+..+. .+.+++
T Consensus 81 -------------------------------------~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~ 122 (391)
T 1l0q_A 81 -------------------------------------VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLA 122 (391)
T ss_dssp -------------------------------------ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred -------------------------------------ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEE
Confidence 677777664 44566889999988887777666543 455555
Q ss_pred EeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC
Q psy18018 391 LRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN 467 (635)
Q Consensus 391 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~ 467 (635)
|+ |+++++ ++++.++.|++||+.+++....+..+.. +.++.++ ++
T Consensus 123 ~s-------------------------------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~ 170 (391)
T 1l0q_A 123 LS-------------------------------PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGT 170 (391)
T ss_dssp EC-------------------------------TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSS
T ss_pred EC-------------------------------CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-cceEEECCCCC
Confidence 54 455555 4556677888888888877777766543 4667664 55
Q ss_pred EE-EEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe---CCCcEEEEECCCCceeeeeccceec
Q psy18018 468 IL-VSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS---DDGTVKLWDVKTGEFSTPLMSSFIL 541 (635)
Q Consensus 468 ~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~ 541 (635)
.+ ++++.|+.|++||+.+++....+. +...+.++++ +++++++++ .++.|++||+++++.+..+..
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---- 242 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---- 242 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC----
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec----
Confidence 65 677889999999999998887776 4456788888 588888887 689999999999876655543
Q ss_pred CceeEEeccCceecccccCCCeEE-EEecCCCeEEEEeCCCCceEEeee
Q psy18018 542 NPFYFLIYSQPLLCPHLQFNSRFV-ITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
...+.+++|+|++++| ++++.|+.|++||+.+++.+..+.
T Consensus 243 --------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 243 --------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp --------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred --------CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 2357889999999877 677899999999999999988774
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.8e-28 Score=219.16 Aligned_cols=255 Identities=15% Similarity=0.148 Sum_probs=172.9
Q ss_pred EEEEecCCCeEEEEEccCC---ceEEeeeCCCcceeEEEEeCC------------------EEEEEeCCCcEEEEEccCC
Q psy18018 355 HVVSGSLDTSIRVWEAESG---NLRHTLMGHQSLTSGMELRNN------------------ILVSGNADSTVKVWDIVSG 413 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~---~~~~~~~~~~~~v~~l~~~~~------------------~l~s~~~dg~i~iwd~~~~ 413 (635)
.++++++ ..|++|+..++ +.++++..|+.+|..+.+.++ .|+.+..|+.+..+.+..+
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 4566664 58999999998 788999999988888877541 2223333333333333333
Q ss_pred cceeEEEEEeeCCcEEEEEe--CCCcEEEEeC-CCCceeeeeccCCccEEE--EEe---cCCEEEEEeCCCcEEEEECCC
Q psy18018 414 TKKLMFRICLFDGVHVVSGS--LDTSIRVWEA-ESGNLRHTLMGHQSLTSG--MEL---RNNILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~-~~~~~~~~~~~~~~~v~~--~~~---~~~~l~s~~~dg~i~iwd~~~ 485 (635)
+...... .++++.+.++. .|+.|++|++ .+++.+..+.+|...+.. +++ ++.+|++++.|++|+|||+++
T Consensus 135 ~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T 212 (356)
T 2w18_A 135 NIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT 212 (356)
T ss_dssp EEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred CeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence 2222222 14555555533 5999999999 458888888888776555 444 457999999999999999999
Q ss_pred CceeEEecCCCcccccEEEEEe--cCCEE------------EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFV------------ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ 551 (635)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l------------~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (635)
+++++.+.++..+...+.+++| ++.++ ++|+.|++|++||..+++.+..+....+. .|..
T Consensus 213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~------Gh~~ 286 (356)
T 2w18_A 213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP------GQAG 286 (356)
T ss_dssp CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT------TCCC
T ss_pred CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC------CCcc
Confidence 9999999863333446666666 67665 67889999999999999876544211000 1222
Q ss_pred ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEE-EEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVW-RIRASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~l~~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
.+. ..+.++.++|+++.|++|+|||+.+++++.++ .+|...+. .++|||||++|++|+.|++ +|||.
T Consensus 287 ~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-----~gH~~~vvs~vafSPDG~~LaSGS~D~T--IklWd 354 (356)
T 2w18_A 287 RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQKDGN--IFVYH 354 (356)
T ss_dssp CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEE-----CCC--CCCCEEEECSSSSEEEEECTTSC--EEEEE
T ss_pred eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-----cCCCCCeEEEEEECCCCCEEEEEECCCc--EEEec
Confidence 222 22334778999999999999999999999998 46665544 6899999999999999999 56664
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=259.89 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=191.6
Q ss_pred CceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe
Q psy18018 73 PKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY 150 (635)
Q Consensus 73 ~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~ 150 (635)
+..+.+|.+.| ++++|+ +++|++|+.||+|++||+.++ +++.+..+.+|.++|++++|
T Consensus 2 ~~~l~gH~~~V-~~l~~s~dg~~latg~~dg~I~vwd~~~~-------------------~~~~~~~l~~h~~~V~~l~~ 61 (753)
T 3jro_A 2 VVIANAHNELI-HDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDW 61 (753)
T ss_dssp ------CCCCE-EEECCCSSSCCEEEEETTTEEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEE
T ss_pred eeecccCccee-EEEEECCCCCeEEEEECCCcEEEEecCCC-------------------CCccceeccCCcCceEEEEe
Confidence 35688999988 999999 899999999999999997633 24667788999999999999
Q ss_pred --c--CCEEEEEeCCCeEEEEeCCCcc--ceeeccccceeEEee-eccC--CCEEEEEeCCCcEEEEECCCC--eEEEEE
Q psy18018 151 --D--GKLVVSGAYDYMVKIWNPDTEE--CLHAELQETEVELSH-GYAL--RSRIVSGSDDNTLKVWSATTG--KCLRTL 219 (635)
Q Consensus 151 --~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~ 219 (635)
+ +++|++++.||+|++||+.+++ .......+...+... ..+. +..+++++.||.|++||+.++ .....+
T Consensus 62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 4 8999999999999999999886 555555554444444 4455 789999999999999999876 344567
Q ss_pred eCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEee
Q psy18018 220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTF 299 (635)
Q Consensus 220 ~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (635)
.+|...|.++.|++..+...+
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~----------------------------------------------------------- 162 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDG----------------------------------------------------------- 162 (753)
T ss_dssp ECCSSCEEEEEECCCC----------------------------------------------------------------
T ss_pred ecCCCceEEEEecCccccccc-----------------------------------------------------------
Confidence 789999998887543111000
Q ss_pred cCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCC----ce
Q psy18018 300 LQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG----NL 375 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~----~~ 375 (635)
.....+++.++++|+.||.|++||+.++ ..
T Consensus 163 ----------------------------------------------~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~ 196 (753)
T 3jro_A 163 ----------------------------------------------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (753)
T ss_dssp --------------------------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred ----------------------------------------------ccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence 0002446788999999999999999876 45
Q ss_pred EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC---CcEEEEEeCCCcEEEEeCCCCc-----
Q psy18018 376 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD---GVHVVSGSLDTSIRVWEAESGN----- 447 (635)
Q Consensus 376 ~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~----- 447 (635)
...+.+|...|.+++|+ |+ +.++++++.||.|++||+.+++
T Consensus 197 ~~~~~~h~~~V~~l~~s-------------------------------p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 245 (753)
T 3jro_A 197 ESTLEGHSDWVRDVAWS-------------------------------PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK 245 (753)
T ss_dssp EEEECCCSSCEEEEEEC-------------------------------CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC
T ss_pred eeeecCCCCcEEEEEec-------------------------------cCCCCCCEEEEEecCCEEEEecCCCCCCccee
Confidence 66788899999999987 23 4455555555556666655542
Q ss_pred eeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce
Q psy18018 448 LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC 488 (635)
Q Consensus 448 ~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 488 (635)
.......|...+.++++ +++++++++.||.|++|++..+..
T Consensus 246 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 23334557888888887 567999999999999999986543
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4e-26 Score=226.23 Aligned_cols=297 Identities=13% Similarity=0.106 Sum_probs=214.7
Q ss_pred EeeCCCc--EEEEeCCCC--eEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceee-----ccccceeE
Q psy18018 117 SGSRDAT--LRVWHIESG--ECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHA-----ELQETEVE 185 (635)
Q Consensus 117 ~~~~dg~--i~vwd~~~~--~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~ 185 (635)
+++.++. |..+|.+++ +.+..+..+.. +.+++| ++..+++++.|+.|++||+.+++.... ...+....
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v 172 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFV 172 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCce
Confidence 4555664 444444334 66666766544 458888 667788888899999999999887763 22333334
Q ss_pred Eeeec-cCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeecccccccc
Q psy18018 186 LSHGY-ALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSC 264 (635)
Q Consensus 186 ~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 264 (635)
....+ +.+..+++++.|+.|++||+.+++.+..+..|...+.+++
T Consensus 173 ~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~---------------------------------- 218 (433)
T 3bws_A 173 ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL---------------------------------- 218 (433)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE----------------------------------
T ss_pred eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE----------------------------------
Confidence 44444 4566788888999999999999998888887777766655
Q ss_pred CccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCC
Q psy18018 265 EPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVP 344 (635)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (635)
T Consensus 219 -------------------------------------------------------------------------------- 218 (433)
T 3bws_A 219 -------------------------------------------------------------------------------- 218 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
++|+++.++ +++.++.|++||+.+++.+..+..+. .+.+++++
T Consensus 219 ----~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~------------------------------- 262 (433)
T 3bws_A 219 ----YDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLS------------------------------- 262 (433)
T ss_dssp ----EETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEEC-------------------------------
T ss_pred ----EcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEc-------------------------------
Confidence 566666664 44467888888888777766665543 35666654
Q ss_pred eCCcEEEEEe--------CCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC-EEEEEeCCCcEEEEECCCCceeEEe
Q psy18018 424 FDGVHVVSGS--------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 424 ~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 492 (635)
|+++++++++ .|+.|++||+.+++....+ .|...+.++.++ ++ ++++++.|+.|++||+.+++....+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 3444444444 4778888888877766655 345567777774 44 5677789999999999999888877
Q ss_pred cCCCcccccEEEEEe--cCCEEEEEeC---------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceec
Q psy18018 493 SGRNKHQSAVTCLQF--NSRFVITSSD---------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC 555 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~--~~~~l~~~~~---------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 555 (635)
. +...+.++++ +++++++++. ||.|++||+.+++....+.. ...+.+
T Consensus 342 ~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------------~~~~~~ 405 (433)
T 3bws_A 342 P----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------------GNQPTG 405 (433)
T ss_dssp E----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------------SSSEEE
T ss_pred c----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC------------CCCCce
Confidence 6 5566888888 5888888876 57999999999887665542 456889
Q ss_pred ccccCCCeEEEEecC-CCeEEEEeCCC
Q psy18018 556 PHLQFNSRFVITSSD-DGTVKLWDVKT 581 (635)
Q Consensus 556 ~~~s~~~~~l~~~~~-d~~v~iwd~~~ 581 (635)
++|+||+++|++++. |+.|++|+++.
T Consensus 406 ~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 406 LDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999999999988764 99999999863
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.7e-28 Score=238.50 Aligned_cols=206 Identities=10% Similarity=0.073 Sum_probs=134.4
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeC---CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcE
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVH 428 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 428 (635)
|+++|++++.|++|++||+.++..+..+..|...+.+++|++ .+|++++.|+.|++||+.+++............
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~-- 232 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK-- 232 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS--
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc--
Confidence 678899999999999999988888888889999999999983 479999999999999998876543322110000
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe---cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEE-
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL---RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC- 504 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~- 504 (635)
.+ .+.-++...........+|...+.++.+ +++.+++++.|+++++||+..++....+.. +...+..
T Consensus 233 -----~~-~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~ 303 (393)
T 4gq1_A 233 -----NP-WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPK 303 (393)
T ss_dssp -----CC-CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------
T ss_pred -----cc-eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccE
Confidence 00 0111111111122234567788888776 577999999999999999987766555543 2222211
Q ss_pred ------------------EEe---cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 505 ------------------LQF---NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 505 ------------------~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
+.+ ++.++++|+.||.|++||+.+++...... .|..+|.+++|||||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-----------~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-----------QLGMPIVDFCWHQDGS 372 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-----------ECSSCEEEEEECTTSS
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-----------CCCCcEEEEEEcCCCC
Confidence 122 34577888999999999999987655443 3678999999999999
Q ss_pred EEEEecCCCeEEEEeCC
Q psy18018 564 FVITSSDDGTVKLWDVK 580 (635)
Q Consensus 564 ~l~~~~~d~~v~iwd~~ 580 (635)
+||+++++| +.+|.+.
T Consensus 373 ~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEESSE-EEEEEEG
T ss_pred EEEEEeCCC-eEEEEEe
Confidence 999999776 6666654
No 124
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2e-27 Score=232.71 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=211.4
Q ss_pred EEEEecCCCCCCCceee-cCCcchheeeccceeeeeeecCCC----CCCceeeccCcceEEEEEEc---CCEEEEeeCCC
Q psy18018 30 TCLQFSGKSFPCESFIR-SSSPWKALFMSHRSVEINWRTRPI----KDPKVLKGHDDHVITCLQFS---GSRIVSGSDDN 101 (635)
Q Consensus 30 ~~~~~s~~~~~~~~~la-~~~~~~~~~~~~~~~~~iwd~~~~----~~~~~l~~h~~~vi~~~~~s---~~~l~s~~~d~ 101 (635)
.+++++ |+...++ +++. +..+.+|+.... +.+..+.+|.+.| ++++|+ +++||+|+.||
T Consensus 38 ~~~~~~----~~~~~~~~~~~~--------~g~i~v~~~~~~~~~~~~~~~~~~h~~~V-~~~~~~p~~~~~l~s~s~dg 104 (402)
T 2aq5_A 38 GFCAVN----PKFMALICEASG--------GGAFLVLPLGKTGRVDKNVPLVCGHTAPV-LDIAWCPHNDNVIASGSEDC 104 (402)
T ss_dssp CSEEEC----SSEEEEEBCCSS--------SCCEEEEETTCCEECCTTCCCBCCCSSCE-EEEEECTTCTTEEEEEETTS
T ss_pred CcEEEC----CCeEEEEEEEcC--------CCEEEEEECccCCCCCCCCceEecCCCCE-EEEEeCCCCCCEEEEEeCCC
Confidence 567888 6555443 4444 444557998654 3566788999988 999997 78999999999
Q ss_pred cEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cC-CEEEEEeCCCeEEEEeCCCccceeec
Q psy18018 102 TLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DG-KLVVSGAYDYMVKIWNPDTEECLHAE 178 (635)
Q Consensus 102 ~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 178 (635)
+|++||+.++... ....+++..+.+|...|.+++| ++ .+|++++.||+|++||+.+++.+..+
T Consensus 105 ~v~vw~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 105 TVMVWEIPDGGLV--------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170 (402)
T ss_dssp EEEEEECCTTCCS--------------SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEEccCCCCc--------------cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence 9999998865311 0112567788899999999999 55 69999999999999999999988877
Q ss_pred --cccce-eEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCCCCC-eEEEEee--CCEEEEe---eCceeEEEe
Q psy18018 179 --LQETE-VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL-IGHTGG-VWSSQMA--GNIIISG---STDRTLKGW 248 (635)
Q Consensus 179 --~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~-v~~~~~~--~~~l~s~---~~dg~i~~w 248 (635)
..+.. +......+++..|++++.|+.|++||+++++.+..+ .+|.+. +..+.|. +.+++++ +.|+.|++|
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iw 250 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEE
Confidence 44444 444455567789999999999999999999999998 788876 8888884 6788888 799999999
Q ss_pred cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018 249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328 (635)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (635)
|+.........
T Consensus 251 d~~~~~~~~~~--------------------------------------------------------------------- 261 (402)
T 2aq5_A 251 DTKHLEEPLSL--------------------------------------------------------------------- 261 (402)
T ss_dssp ETTBCSSCSEE---------------------------------------------------------------------
T ss_pred cCccccCCceE---------------------------------------------------------------------
Confidence 98764210000
Q ss_pred hhhhhhhccccccCCCceEEEEecCcEEE-EecCCCeEEEEEccCCce-EEeeeC--CCcceeEEEEeCCEEEEEeCCCc
Q psy18018 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNL-RHTLMG--HQSLTSGMELRNNILVSGNADST 404 (635)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~-~~~~~~--~~~~v~~l~~~~~~l~s~~~dg~ 404 (635)
...........++++|++++++ +|+.||.|++|++.+++. +..+.. |...+.+++|+++....++.++.
T Consensus 262 -------~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~ 334 (402)
T 2aq5_A 262 -------QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEI 334 (402)
T ss_dssp -------EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEE
T ss_pred -------EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceeccee
Confidence 0001122345567999999886 566799999999998874 444444 55899999998543333456778
Q ss_pred EEEEEccCCcc
Q psy18018 405 VKVWDIVSGTK 415 (635)
Q Consensus 405 i~iwd~~~~~~ 415 (635)
+++|++.++..
T Consensus 335 ~~~~~l~~~~~ 345 (402)
T 2aq5_A 335 ARFYKLHERKC 345 (402)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCcE
Confidence 89998886543
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-28 Score=256.48 Aligned_cols=245 Identities=19% Similarity=0.233 Sum_probs=188.8
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEcc--CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
...++|+|+++++++|+.||.|++|++. ++..+..+.+|...|.+++|+++
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~--------------------------- 64 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP--------------------------- 64 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCT---------------------------
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCC---------------------------
Confidence 3445577888888888888999999887 45677788999999999998621
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCc--eeeeeccCCccEEEEEec----CCEEEEEeCCCcEEEEECCCCce--eEEec
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELR----NNILVSGNADSTVKVWDIVSGQC--LQTLS 493 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~ 493 (635)
.+++++++++.||.|++||+.+++ ....+.+|...|.++.++ ++++++++.||.|++||+.++.. ...+.
T Consensus 65 --~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~ 142 (753)
T 3jro_A 65 --KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID 142 (753)
T ss_dssp --TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred --CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee
Confidence 114455666666666666666665 566778899999999985 67999999999999999987733 33444
Q ss_pred CCCcccccEEEEEec---------------CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 494 GRNKHQSAVTCLQFN---------------SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 494 ~~~~~~~~v~~~~~~---------------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
. |...|.+++|+ +.++++++.||.|++||++++........ ....|...|++++|
T Consensus 143 ~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~h~~~V~~l~~ 212 (753)
T 3jro_A 143 A---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-------TLEGHSDWVRDVAW 212 (753)
T ss_dssp C---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE-------EECCCSSCEEEEEE
T ss_pred c---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee-------eecCCCCcEEEEEe
Confidence 4 88899999994 57999999999999999988743222111 12247889999999
Q ss_pred cCC---CeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 559 QFN---SRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 559 s~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+|+ +++|++++.||.|++||+.+++............+...|++++|+|+|++|++++.||. |.+||++
T Consensus 213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~----I~vwd~~ 284 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK----VTLWKEN 284 (753)
T ss_dssp CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC----EECCBCC
T ss_pred ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE----EEEEecC
Confidence 999 99999999999999999998753222222222568889999999999999999999998 5555554
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-27 Score=232.69 Aligned_cols=195 Identities=16% Similarity=0.211 Sum_probs=150.6
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEE----eeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH----TLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMF 419 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 419 (635)
...++|+|++.+|++|+.+|.|++|++.++.... .+.+|...|.+++|+
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--------------------------- 204 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI--------------------------- 204 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE---------------------------
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc---------------------------
Confidence 3456789999999999999999999988776544 677888888888876
Q ss_pred EEEeeC---CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018 420 RICLFD---GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSG 494 (635)
Q Consensus 420 ~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 494 (635)
|+ +++|++++.|+.|++||+.+++.+.. +.+|...|.+++| ++++|++++.|+.|++||+.+++++..+..
T Consensus 205 ----p~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 205 ----KDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp ----ECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred ----CCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 45 66777888888888888888877776 5689999999998 578999999999999999999998887763
Q ss_pred CC----------------------cccccEEEEEe--cCCEEEEEe-CCCcEEEEEC--CCC---ceeeeeccceecCce
Q psy18018 495 RN----------------------KHQSAVTCLQF--NSRFVITSS-DDGTVKLWDV--KTG---EFSTPLMSSFILNPF 544 (635)
Q Consensus 495 ~~----------------------~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~--~~~---~~~~~~~~~~~~~~~ 544 (635)
.. .....|.++++ +++++++++ .|+.|++|++ .++ +.+..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------- 352 (450)
T 2vdu_B 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------- 352 (450)
T ss_dssp HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--------
T ss_pred hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--------
Confidence 11 23456888888 588999998 8999999999 544 2222222
Q ss_pred eEEeccCceecccccCCCeEEEEecC------CCeEEEEeCCC
Q psy18018 545 YFLIYSQPLLCPHLQFNSRFVITSSD------DGTVKLWDVKT 581 (635)
Q Consensus 545 ~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~v~iwd~~~ 581 (635)
.+ ..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 353 ---~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 353 ---FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ---CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ---cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 13 68999999996555554443 45588887643
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6e-27 Score=230.81 Aligned_cols=243 Identities=19% Similarity=0.323 Sum_probs=191.6
Q ss_pred ccCCCceEEEEec-CcEEEEecCCCeEEEEEccC----------CceEEeeeCCCcceeEEEEeC--C-EEEEEeCCCcE
Q psy18018 340 KTHVPDLFGFQFD-GVHVVSGSLDTSIRVWEAES----------GNLRHTLMGHQSLTSGMELRN--N-ILVSGNADSTV 405 (635)
Q Consensus 340 ~~~~~~~~~~s~~-~~~l~~~~~dg~i~v~~~~~----------~~~~~~~~~~~~~v~~l~~~~--~-~l~s~~~dg~i 405 (635)
+...+..++++|+ +.++++++.+|.|++|++.+ ...+..+.+|...+.+++|++ . +|++++.||.|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 4456777889996 78999999999999999986 567788899999999999973 3 67777777777
Q ss_pred EEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec---CCEEEEEeCCCcEEEEE
Q psy18018 406 KVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWD 482 (635)
Q Consensus 406 ~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd 482 (635)
++|++..+.... . . ......+.+|...|.++.++ +.++++++.||.|++||
T Consensus 207 ~vwd~~~~~~~~------------------~-~-------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 207 CLWDINATPKEH------------------R-V-------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp EEEETTSCCBGG------------------G-E-------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEEeCCCCCCCC------------------c-e-------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence 777765421100 0 0 01244567899999999985 45999999999999999
Q ss_pred CCCC---ceeEEecCCCcccccEEEEEec--CC-EEEEEeCCCcEEEEECCCCc-eeeeeccceecCceeEEeccCceec
Q psy18018 483 IVSG---QCLQTLSGRNKHQSAVTCLQFN--SR-FVITSSDDGTVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLC 555 (635)
Q Consensus 483 ~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 555 (635)
++++ +.+..+.. |...|.+++|+ ++ ++++|+.||.|++||+++.. .+..+. .|...|++
T Consensus 261 ~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-----------~h~~~v~~ 326 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-----------SHKDEIFQ 326 (430)
T ss_dssp TTCSCSSSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-----------CCSSCEEE
T ss_pred CCCCCCCcceeEeec---CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-----------cCCCCEEE
Confidence 9987 46666655 88999999994 44 79999999999999999743 333332 37889999
Q ss_pred ccccCCCe-EEEEecCCCeEEEEeCCC--------------CceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCC
Q psy18018 556 PHLQFNSR-FVITSSDDGTVKLWDVKT--------------GEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNG 619 (635)
Q Consensus 556 ~~~s~~~~-~l~~~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg 619 (635)
++|+|+++ +|++++.|+.|+|||+.. .+.+..+ .+|...|.+++|+|+++ +|++++.||
T Consensus 327 i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp EEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEECCC
Confidence 99999995 799999999999999987 2455555 57889999999999999 999999999
Q ss_pred eeEeEEEEEe
Q psy18018 620 TEETKLLVLD 629 (635)
Q Consensus 620 ~~~~~l~~~d 629 (635)
. +++|.++
T Consensus 402 ~--i~iw~~~ 409 (430)
T 2xyi_A 402 I--MQVWQMA 409 (430)
T ss_dssp E--EEEEEEC
T ss_pred C--EEEeEcc
Confidence 8 5555543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.5e-25 Score=219.69 Aligned_cols=314 Identities=9% Similarity=0.032 Sum_probs=236.8
Q ss_pred cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEEC--CCCeEEEEEeCCCCCeEE
Q psy18018 151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSA--TTGKCLRTLIGHTGGVWS 228 (635)
Q Consensus 151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~ 228 (635)
++..+++++.|++|.+||..+++.+..+............+++.+|++++.|+.|.+||+ .+++.+.++..+ ..+..
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~ 226 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARS 226 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcce
Confidence 788899999999999999999998888774444555556677889999999999999999 778777766532 12222
Q ss_pred EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA 308 (635)
Q Consensus 229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (635)
T Consensus 227 -------------------------------------------------------------------------------- 226 (543)
T 1nir_A 227 -------------------------------------------------------------------------------- 226 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe----cCcEEEEecC-CCeEEEEEccCCceEEeeeCC-
Q psy18018 309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF----DGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH- 382 (635)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~- 382 (635)
++|+| +|+++++++. ++.|.+||..+++++..+..+
T Consensus 227 --------------------------------------va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g 268 (543)
T 1nir_A 227 --------------------------------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 268 (543)
T ss_dssp --------------------------------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred --------------------------------------EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence 34788 8888888874 789999999988888777652
Q ss_pred ---------C-cceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeEE----------EEEeeCCcEEEEEe-CCCcE
Q psy18018 383 ---------Q-SLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLMF----------RICLFDGVHVVSGS-LDTSI 438 (635)
Q Consensus 383 ---------~-~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~l~~~~-~d~~i 438 (635)
. ..+.++.++ +.++++...++.|.+||+.+.+..... ..++|+++++++++ .+++|
T Consensus 269 ~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v 348 (543)
T 1nir_A 269 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKV 348 (543)
T ss_dssp ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred cccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeE
Confidence 2 267888887 346777888999999999876543311 24789999877665 58899
Q ss_pred EEEeCCCCceeeeecc----CCccEEEEE-ec-CCEEEEEe-CCCcEEEEECCC-------CceeEEecCCCcccccEEE
Q psy18018 439 RVWEAESGNLRHTLMG----HQSLTSGME-LR-NNILVSGN-ADSTVKVWDIVS-------GQCLQTLSGRNKHQSAVTC 504 (635)
Q Consensus 439 ~~~d~~~~~~~~~~~~----~~~~v~~~~-~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~ 504 (635)
.+||..++++...+.. |.+....+. ++ +..++++. .|++|.+||..+ .++++.+.. +...+..
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~---~g~~~~~ 425 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---QGGGSLF 425 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCC
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc---CCCCceE
Confidence 9999999999888874 654444443 33 44667765 689999999988 888999987 6556666
Q ss_pred EEe--cCCEEEEEe-------CCCcEEEEECCCCcee-eeeccceecCceeEEeccCceecccccCCCeEEEEe-----c
Q psy18018 505 LQF--NSRFVITSS-------DDGTVKLWDVKTGEFS-TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-----S 569 (635)
Q Consensus 505 ~~~--~~~~l~~~~-------~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~ 569 (635)
+++ ++++|++++ .+++|.+||+.+++.. ..+....... ...+...+..++|+|||+.++++ +
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD---LGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC---CCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc---cCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 666 789999987 2779999999999865 3321100000 00135678899999999998876 2
Q ss_pred CCCeEEEEeCCCCceEEeee
Q psy18018 570 DDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~~~~~~ 589 (635)
.|+.|.|||.+++++++.+.
T Consensus 503 ~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCceEEEeec
Confidence 47999999999999998884
No 129
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=7.3e-26 Score=223.08 Aligned_cols=206 Identities=21% Similarity=0.330 Sum_probs=163.5
Q ss_pred ccccccccceEEEEEecCCCCCC-CceeecCCcchheeeccceeeeeeecCC----------CCCCceeeccCcceEEEE
Q psy18018 19 KVLKGHDDHVITCLQFSGKSFPC-ESFIRSSSPWKALFMSHRSVEINWRTRP----------IKDPKVLKGHDDHVITCL 87 (635)
Q Consensus 19 ~~l~gh~~~vi~~~~~s~~~~~~-~~~la~~~~~~~~~~~~~~~~~iwd~~~----------~~~~~~l~~h~~~vi~~~ 87 (635)
..+.+|.+.| ++++|+ |+ +.++|+++.++. +.+||..+ .+.+..+.+|...+ .++
T Consensus 122 ~~~~~h~~~v-~~l~~~----p~~~~~lat~~~dg~--------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l 187 (430)
T 2xyi_A 122 EIKINHEGEV-NRARYM----PQNACVIATKTPSSD--------VLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG-YGL 187 (430)
T ss_dssp EEEEEESSCC-SEEEEE----TTEEEEEEEECSSSC--------EEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC-CCE
T ss_pred EEEEcCCCcE-EEEEEC----CCCCcEEEEECCCCc--------EEEEECCCcccccCccccCCCcEEecCCCCCe-EEE
Confidence 5567999999 999999 76 789999886543 44699987 67888999999988 899
Q ss_pred EEc--CC-EEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCC
Q psy18018 88 QFS--GS-RIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYD 161 (635)
Q Consensus 88 ~~s--~~-~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~d 161 (635)
+|+ ++ +|++|+.||.|++||+.++... .. .......+.+|...|.+++| ++..+++++.|
T Consensus 188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------~~-------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d 253 (430)
T 2xyi_A 188 SWNPNLNGYLLSASDDHTICLWDINATPKE-------HR-------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253 (430)
T ss_dssp EECTTSTTEEEEECTTSCEEEEETTSCCBG-------GG-------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred EeCCCCCCeEEEEeCCCeEEEEeCCCCCCC-------Cc-------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence 999 55 9999999999999999864210 00 00224567799999999999 57899999999
Q ss_pred CeEEEEeCCCc---cceeeccccceeEEeeec-cCCC-EEEEEeCCCcEEEEECCC-CeEEEEEeCCCCCeEEEEee--C
Q psy18018 162 YMVKIWNPDTE---ECLHAELQETEVELSHGY-ALRS-RIVSGSDDNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA--G 233 (635)
Q Consensus 162 g~v~iwd~~~~---~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~ 233 (635)
|.|++||+.++ +.+..+..+...+..+.+ +.+. .+++++.||.|++||+++ .+++..+.+|...|.++.|+ +
T Consensus 254 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC
T ss_pred CeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC
Confidence 99999999987 455555455444444444 4444 688999999999999998 67788999999999999985 3
Q ss_pred -CEEEEeeCceeEEEecccc
Q psy18018 234 -NIIISGSTDRTLKGWSNAE 252 (635)
Q Consensus 234 -~~l~s~~~dg~i~~w~~~~ 252 (635)
..+++++.||.|++||+..
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEeCCC
Confidence 4688888888888888754
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.1e-23 Score=209.66 Aligned_cols=309 Identities=11% Similarity=0.028 Sum_probs=218.9
Q ss_pred eCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeC--CCccceeeccccceeEEeeecc---
Q psy18018 119 SRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNP--DTEECLHAELQETEVELSHGYA--- 191 (635)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~--- 191 (635)
+.+++|.+||..+++++.++..+.. +.+++| |+++|++++.|++|++||+ .+++.+..+..........+.+
T Consensus 156 ~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~ 234 (543)
T 1nir_A 156 RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 234 (543)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcC
Confidence 3333444444445666777763333 788888 9999999999999999999 7888887777665555555556
Q ss_pred -CCCEEEEEeC-CCcEEEEECCCCeEEEEEeCC----------CC-CeEEEEee---CCEEEEeeCceeEEEecccceee
Q psy18018 192 -LRSRIVSGSD-DNTLKVWSATTGKCLRTLIGH----------TG-GVWSSQMA---GNIIISGSTDRTLKGWSNAERIL 255 (635)
Q Consensus 192 -~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h----------~~-~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~ 255 (635)
++.++++++. +++|.+||..++++++++..+ .. .+.++.++ +.++++...++.|.+||..+...
T Consensus 235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 7888888874 899999999999999988653 22 67888885 44677888899999999865321
Q ss_pred eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018 256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL 335 (635)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (635)
....
T Consensus 315 l~~~---------------------------------------------------------------------------- 318 (543)
T 1nir_A 315 LTVT---------------------------------------------------------------------------- 318 (543)
T ss_dssp CEEE----------------------------------------------------------------------------
T ss_pred ceeE----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccCCCceEEEEecCcEEEEe-cCCCeEEEEEccCCceEEeeeC----CCcceeEEEEeCCEEEEEeCCCcEEEEEc
Q psy18018 336 HRNKKTHVPDLFGFQFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMG----HQSLTSGMELRNNILVSGNADSTVKVWDI 410 (635)
Q Consensus 336 ~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~~~~~~~~----~~~~v~~l~~~~~~l~s~~~dg~i~iwd~ 410 (635)
..........++|+|++++++++ ..++.|.+||..+++++..+.. |......+
T Consensus 319 -~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~--------------------- 376 (543)
T 1nir_A 319 -SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF--------------------- 376 (543)
T ss_dssp -EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE---------------------
T ss_pred -EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc---------------------
Confidence 00011233446799999987655 4588999999999998877764 33222111
Q ss_pred cCCcceeEEEEEeeC-CcEEEEEe-CCCcEEEEeCCC-------CceeeeeccCCccEEEEEe--cCCEEEEEe------
Q psy18018 411 VSGTKKLMFRICLFD-GVHVVSGS-LDTSIRVWEAES-------GNLRHTLMGHQSLTSGMEL--RNNILVSGN------ 473 (635)
Q Consensus 411 ~~~~~~~~~~~~~~~-~~~l~~~~-~d~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~s~~------ 473 (635)
.+|+ +..++++. .|++|.+||..+ .+.++++.+|...+..+.+ ++++|++++
T Consensus 377 -----------~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 377 -----------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp -----------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred -----------CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 1234 33344443 467888888877 7889999998877666655 567888887
Q ss_pred -CCCcEEEEECCCCcee-EEecC-----CCcccccEEEEEe--cCCEEEEEe-----CCCcEEEEECCCCceeeeecc
Q psy18018 474 -ADSTVKVWDIVSGQCL-QTLSG-----RNKHQSAVTCLQF--NSRFVITSS-----DDGTVKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 474 -~dg~i~iwd~~~~~~~-~~~~~-----~~~~~~~v~~~~~--~~~~l~~~~-----~d~~i~vwd~~~~~~~~~~~~ 537 (635)
.+++|.+||+.+++.. ..+.. ...+...+..++| +|+.++++. .|+.|.|||.++++++..+..
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 2779999999998877 44311 1225677888888 688887662 479999999999998887764
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1e-22 Score=198.74 Aligned_cols=207 Identities=19% Similarity=0.195 Sum_probs=153.0
Q ss_pred EEEecCcEEEEecCCC---eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018 348 GFQFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF 424 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 424 (635)
+|+|+|++|+.++.++ .|++||+.+++.. .+..|...+.+++|+ |
T Consensus 185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-------------------------------p 232 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS-------------------------------P 232 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC-------------------------------T
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc-------------------------------C
Confidence 3788888888887764 8999999988765 466677777777765 5
Q ss_pred CCcEEE-EEeCCC--cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeC-CC--cEEEEECCCCceeEEecCCC
Q psy18018 425 DGVHVV-SGSLDT--SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNA-DS--TVKVWDIVSGQCLQTLSGRN 496 (635)
Q Consensus 425 ~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~ 496 (635)
||+.|+ +++.++ .|++||+.+++. ..+..|...+.++.| +++.|+.++. ++ .|++||+.+++. ..+..
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~-- 308 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW-- 308 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCC--
T ss_pred CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEec--
Confidence 555555 344343 488888887765 567778888888887 4667887776 45 677889887764 33433
Q ss_pred cccccEEEEEe--cCCEEEEEeCC---CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC
Q psy18018 497 KHQSAVTCLQF--NSRFVITSSDD---GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD 571 (635)
Q Consensus 497 ~~~~~v~~~~~--~~~~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 571 (635)
+...+.+++| +|++|++++.+ ..|++||+.+++... +.. + ..+.+++|+|||++|++++.+
T Consensus 309 -~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~-----------~-~~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 309 -EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSS-----------T-FLDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp -SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCC-----------S-SSCEEEEECTTSSEEEEEEEE
T ss_pred -CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecC-----------C-CCcCCeEEcCCCCEEEEEEcC
Confidence 4556777887 68999888764 589999999887532 221 2 268889999999999998877
Q ss_pred C---eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018 572 G---TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL 610 (635)
Q Consensus 572 ~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 610 (635)
+ .|++||+. ++.+..+ ..+.+.|.+++|+|...
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l-----~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARL-----PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEEC-----CCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEe-----eCCCCCCcCCccccccc
Confidence 7 89999987 4445666 47889999999999653
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=3.4e-21 Score=187.97 Aligned_cols=264 Identities=13% Similarity=0.083 Sum_probs=181.8
Q ss_pred CCCeEE--EEeeCCCcceEEEEec----------------CCEEEEEeCC------CeEEEEeCCCccceeeccccc-ee
Q psy18018 130 ESGECL--HVLVGHLAAVRCVQYD----------------GKLVVSGAYD------YMVKIWNPDTEECLHAELQET-EV 184 (635)
Q Consensus 130 ~~~~~~--~~l~~h~~~v~~l~~~----------------~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~-~~ 184 (635)
.+++++ ..+.+|...+..+++. +..++.++.+ ++|++||++.+. ...+..+. .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v 181 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPL 181 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcc
Confidence 344444 4577888888777662 7788887765 799999998544 44444443 44
Q ss_pred EEeeeccCCCEEEEEeCCC---cEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018 185 ELSHGYALRSRIVSGSDDN---TLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI 261 (635)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 261 (635)
......+++.+|+.++.++ .|++||+.+++.. .+..|...+.+++
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~------------------------------- 229 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPA------------------------------- 229 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEE-------------------------------
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEE-------------------------------
Confidence 4555556778899888875 9999999988765 4555555544433
Q ss_pred cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018 262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT 341 (635)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (635)
T Consensus 230 -------------------------------------------------------------------------------- 229 (415)
T 2hqs_A 230 -------------------------------------------------------------------------------- 229 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEecCcEEE-EecCCC--eEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 342 HVPDLFGFQFDGVHVV-SGSLDT--SIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~-~~~~dg--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
|+|||+.|+ +++.++ .|++||+.+++. ..+..|...+.+++|+
T Consensus 230 -------~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-------------------------- 275 (415)
T 2hqs_A 230 -------FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-------------------------- 275 (415)
T ss_dssp -------ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC--------------------------
T ss_pred -------EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC--------------------------
Confidence 777888776 555544 488999987765 4566677777777665
Q ss_pred EEEEeeCCcEEEEEeC-CC--cEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCC---CcEEEEECCCCceeE
Q psy18018 419 FRICLFDGVHVVSGSL-DT--SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNAD---STVKVWDIVSGQCLQ 490 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d---g~i~iwd~~~~~~~~ 490 (635)
|+|++|++++. ++ .|++||+.+++. ..+..+...+.++.| ++++|++++.+ ..|++||+.+++..
T Consensus 276 -----pdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 276 -----PDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp -----TTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred -----CCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 55666665554 33 577778877654 344556667777766 56788877764 58999999988764
Q ss_pred EecCCCcccccEEEEEe--cCCEEEEEeCCC---cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 491 TLSGRNKHQSAVTCLQF--NSRFVITSSDDG---TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
.+.. +. .+.+++| ++++|++++.++ .|++||+..+. ...+.. |...|.+++|+|.-.
T Consensus 349 ~l~~---~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~-----------~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 VLSS---TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA-----------TDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCC---SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCC-----------SSSEEEEEEECCCCC
T ss_pred EecC---CC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeC-----------CCCCCcCCccccccc
Confidence 4443 32 6777888 689999888877 79999997443 444433 577899999999643
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2.1e-21 Score=206.20 Aligned_cols=262 Identities=10% Similarity=0.049 Sum_probs=158.6
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc----------------eeEEEEe--CCEEEEEeCCC-cEE
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL----------------TSGMELR--NNILVSGNADS-TVK 406 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~----------------v~~l~~~--~~~l~s~~~dg-~i~ 406 (635)
.++|+|||++|+.++. +.|++||+.+++.......+... +..++|+ ++.|++++.|+ .+.
T Consensus 156 ~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 156 DAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred cccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 3458888888887764 57888888877665544433322 3566776 45566655432 333
Q ss_pred EEEccCC--cceeEEEE-EeeCCcEEEEEeCCCcEEEEeCCC-Cceeeeec--cCCccEEEEEe-cCCEEEEEeC-----
Q psy18018 407 VWDIVSG--TKKLMFRI-CLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLM--GHQSLTSGMEL-RNNILVSGNA----- 474 (635)
Q Consensus 407 iwd~~~~--~~~~~~~~-~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~--~~~~~v~~~~~-~~~~l~s~~~----- 474 (635)
.|+.... ........ +...+. ......|++||+.+ ++...... .|...+..++| +++.|++++.
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGD----ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQK 310 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTS----CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSS
T ss_pred eEecCCCCCCcccceEeecCCCCC----CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCC
Confidence 3321000 00000000 000110 00111688889988 77654433 36666666554 6677776653
Q ss_pred CCcEEEEECCCCceeEEecCCCc-ccccEEEEEe--cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEecc
Q psy18018 475 DSTVKVWDIVSGQCLQTLSGRNK-HQSAVTCLQF--NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYS 550 (635)
Q Consensus 475 dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~ 550 (635)
+..|++||+.+++....+..... ....+..++| ||+++++++.||.++||.+. +++ ...+.. +.
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-----------~~ 378 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-----------GN 378 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-----------SS
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-----------cc
Confidence 56799999999887766654110 0002345566 78899999999988888776 333 333322 35
Q ss_pred Cceecc-cccCCCeEEE-EecCCC--eEEEEeCCC-CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEE
Q psy18018 551 QPLLCP-HLQFNSRFVI-TSSDDG--TVKLWDVKT-GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKL 625 (635)
Q Consensus 551 ~~v~~~-~~s~~~~~l~-~~~~d~--~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l 625 (635)
..+..+ +|+||++.|+ +++.++ .++||++.. ++.+..+. . ...+.+++|||||++|+....+-...-.+
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-----~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 452 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-----K-APGMHSASFARNASVYVDSWSNNSTPPQI 452 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-----C-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-----c-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence 567676 5999998775 455555 899999874 55455552 2 45688999999999988776654444557
Q ss_pred EEEee
Q psy18018 626 LVLDF 630 (635)
Q Consensus 626 ~~~d~ 630 (635)
+.+|.
T Consensus 453 ~l~~~ 457 (741)
T 2ecf_A 453 ELFRA 457 (741)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 77765
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.4e-19 Score=172.20 Aligned_cols=257 Identities=11% Similarity=0.098 Sum_probs=194.4
Q ss_pred CCCceEEEEecCcEEEEecC-------CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEcc
Q psy18018 342 HVPDLFGFQFDGVHVVSGSL-------DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIV 411 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~-------dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~ 411 (635)
.....++++|+++++++++. ++.|.+||..+++.+..+... ..+..++++ ++ .+++...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 34456789999998888774 568999999999988877653 346677776 45 45555667999999998
Q ss_pred CCcceeE------------------EEEEeeCCcEEEEEe--CCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEE
Q psy18018 412 SGTKKLM------------------FRICLFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNIL 469 (635)
Q Consensus 412 ~~~~~~~------------------~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l 469 (635)
+++.... ...++|+++++++++ .++.|.+||..+++....+..+...+.++.+ +++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 8764332 235788999888776 4788999999999998888755544555555 67899
Q ss_pred EEEeCCCcEEEEECCCCceeEEecCCC-cccccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeeeeccceecCcee
Q psy18018 470 VSGNADSTVKVWDIVSGQCLQTLSGRN-KHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFY 545 (635)
Q Consensus 470 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 545 (635)
++++.++.|.+||+.+++....+.... .+...+..+++ +++++++++. ++.|.+||..+++....+...
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------- 272 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP------- 272 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS-------
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-------
Confidence 999999999999999999887776422 23445666777 5777666654 599999999999877665431
Q ss_pred EEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018 546 FLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN 618 (635)
Q Consensus 546 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d 618 (635)
....++|+||++++++++ .++.|.+||+.+++.+..+. ....+.+++|+|||++|+++..+
T Consensus 273 ------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 273 ------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD------TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE------CCSEEEEEEECTTSCEEEEEEEC
T ss_pred ------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe------cCCCCCeEEEcCCCCEEEEEEcc
Confidence 125689999999655554 78999999999999888773 23468999999999977777665
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=7.6e-20 Score=192.93 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=95.9
Q ss_pred EeeCCcEEEEEeCCC-----cEEEEeCCCCceeeeec-c-CCcc---EE--EEEe--cCCEEEEEeCCCcEEEEECC-CC
Q psy18018 422 CLFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLM-G-HQSL---TS--GMEL--RNNILVSGNADSTVKVWDIV-SG 486 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~-~-~~~~---v~--~~~~--~~~~l~s~~~dg~i~iwd~~-~~ 486 (635)
++|||++|++++.++ .|++||+.+++....+. . +... +. .+++ +++++++++.|+.+++|++. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 346666666665554 77888887773333322 1 2211 22 3444 66788999999999999876 56
Q ss_pred ceeEEecCCCcccccEEE-EEe--cCCEEEEEe-CCC----cEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 487 QCLQTLSGRNKHQSAVTC-LQF--NSRFVITSS-DDG----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~-~~~--~~~~l~~~~-~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
+.+..+.. +...+.. ++| +++.|+.++ .++ .|..||+.+++. ..+ .+...+.+++|
T Consensus 345 ~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l------------~~~~~~~~~~~ 408 (706)
T 2z3z_A 345 RLIRQVTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL------------TPESGMHRTQL 408 (706)
T ss_dssp CEEEECCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES------------CCSSSEEEEEE
T ss_pred CEEEecCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec------------cCCCceEEEEE
Confidence 66777765 5556655 566 677665554 444 677777776652 222 13556888999
Q ss_pred cCCCeEEEEecCC----CeEEEEeCCCCc
Q psy18018 559 QFNSRFVITSSDD----GTVKLWDVKTGE 583 (635)
Q Consensus 559 s~~~~~l~~~~~d----~~v~iwd~~~~~ 583 (635)
||||++++....+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999988876443 569999999887
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=9.8e-20 Score=193.31 Aligned_cols=368 Identities=11% Similarity=0.087 Sum_probs=203.1
Q ss_pred ceEEEEEEc--CCEEEEeeC-CC-----cEEEEECCCCcEEEEEeeCCCc--EEEEeCCCCe--EEEEeeCCCcceEEEE
Q psy18018 82 HVITCLQFS--GSRIVSGSD-DN-----TLKVWSATTGKCLLVSGSRDAT--LRVWHIESGE--CLHVLVGHLAAVRCVQ 149 (635)
Q Consensus 82 ~vi~~~~~s--~~~l~s~~~-d~-----~v~vWd~~~~~~ll~~~~~dg~--i~vwd~~~~~--~~~~l~~h~~~v~~l~ 149 (635)
.+ .+++|| |++|++++. |+ .|++||+.+++........... -..+..+... ....+. ....|.+++
T Consensus 38 ~~-~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 115 (741)
T 2ecf_A 38 TL-MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA-AMTGIVDYQ 115 (741)
T ss_dssp CC-EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCCE
T ss_pred CC-CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc-cccCcceeE
Confidence 45 899999 999999998 88 8999999887754333211100 0000000000 000000 113477888
Q ss_pred e--cCCEEEEEeCCCeEEEEeCCCcc--ceeecccc-ceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC
Q psy18018 150 Y--DGKLVVSGAYDYMVKIWNPDTEE--CLHAELQE-TEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG 224 (635)
Q Consensus 150 ~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~ 224 (635)
| ||++|++++. +.|.+||+.+++ ....+..+ ..+......+++++|+.++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 8 9999999987 999999999882 33333333 3444455556667777776 56999999998876654443332
Q ss_pred CeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018 225 GVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304 (635)
Q Consensus 225 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (635)
.+.. +.. -|-..
T Consensus 194 ~~~~----------g~~-----~~v~~----------------------------------------------------- 205 (741)
T 2ecf_A 194 TIGN----------GIA-----EFVAD----------------------------------------------------- 205 (741)
T ss_dssp SEEE----------SCC-----CHHHH-----------------------------------------------------
T ss_pred ceec----------ccc-----ceeee-----------------------------------------------------
Confidence 2210 000 00000
Q ss_pred hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC-eEEEEEccCCceEEeeeCCC
Q psy18018 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT-SIRVWEAESGNLRHTLMGHQ 383 (635)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~v~~~~~~~~~~~~~~~~ 383 (635)
........++|+|||++|++++.++ .+..|+. .......
T Consensus 206 ----------------------------------~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~------~~~~p~~ 245 (741)
T 2ecf_A 206 ----------------------------------EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR------YEVYADR 245 (741)
T ss_dssp ----------------------------------HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEE------EEECSSC
T ss_pred ----------------------------------eccccccceEECCCCCEEEEEEEcCCCCceEec------CCCCCCc
Confidence 0001122344666666665554332 2222220 0001111
Q ss_pred cceeEEEEeCCEEEEEeCCC--cEEEEEccC-Ccce-----------eEEEEEeeCCcEEEEEeC-----CCcEEEEeCC
Q psy18018 384 SLTSGMELRNNILVSGNADS--TVKVWDIVS-GTKK-----------LMFRICLFDGVHVVSGSL-----DTSIRVWEAE 444 (635)
Q Consensus 384 ~~v~~l~~~~~~l~s~~~dg--~i~iwd~~~-~~~~-----------~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~ 444 (635)
..+..+.+... +..++ .|.+||+.+ ++.. .....+ |||++|+++.. +..|++||+.
T Consensus 246 ~~~~~~~~~~~----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 246 TDVIEQRYPAA----GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp EEEEEEECCBT----TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred ccceEeecCCC----CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 11111111100 00001 233334333 2211 112235 77777776653 5679999999
Q ss_pred CCceeeeeccCCc----cEEEEE--ecCCEEEEEeCCCcEEEEECC-CCceeEEecCCCcccccEEEE-Ee--cCCEEE-
Q psy18018 445 SGNLRHTLMGHQS----LTSGME--LRNNILVSGNADSTVKVWDIV-SGQCLQTLSGRNKHQSAVTCL-QF--NSRFVI- 513 (635)
Q Consensus 445 ~~~~~~~~~~~~~----~v~~~~--~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~-~~--~~~~l~- 513 (635)
+++....+..+.. .+..+. .+++++++++.||.++||.+. +++ ...+.. +...+..+ .| +++.++
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~---~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH---GNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC---SSSCEEEEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee---cceEEEeEeEEeCCCCEEEE
Confidence 8887776665543 223444 467789999999988888765 344 666655 55666655 35 677665
Q ss_pred EEeCCC--cEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCC
Q psy18018 514 TSSDDG--TVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTG 582 (635)
Q Consensus 514 ~~~~d~--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~ 582 (635)
+++.++ .+++|++.. +.....+. ....+..++||||+++|+....+ ..+.+|+...+
T Consensus 397 ~~~~~~~~~~~l~~~~~~g~~~~~l~------------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 397 RAGIESARESQIYAVPLQGGQPQRLS------------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EECSSCTTCBEEEEEETTCCCCEECC------------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEeCCCCceEEEEEEEcCCCCeeecc------------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 555555 899999864 33233222 13456789999999988876544 46899997544
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=6.3e-20 Score=193.58 Aligned_cols=334 Identities=16% Similarity=0.127 Sum_probs=202.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE-EEEeCCC-----------------CCeEEEEeeC-CEEEEeeCceeEEEecccce
Q psy18018 193 RSRIVSGSDDNTLKVWSATTGKCL-RTLIGHT-----------------GGVWSSQMAG-NIIISGSTDRTLKGWSNAER 253 (635)
Q Consensus 193 ~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~-~~l~s~~~dg~i~~w~~~~~ 253 (635)
++.++..+.++ | +||+.+++.+ ..+..|. ..|.+++|+. +.++.+ .++.+++||+.++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 66778888888 8 9999999874 4443333 4689999963 444444 5699999998764
Q ss_pred eeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhh
Q psy18018 254 ILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAA 333 (635)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (635)
.....
T Consensus 112 ~~~~l--------------------------------------------------------------------------- 116 (706)
T 2z3z_A 112 KVTYL--------------------------------------------------------------------------- 116 (706)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceEEc---------------------------------------------------------------------------
Confidence 32100
Q ss_pred hhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccC-----CceEEeeeCCCcc--------------eeEEEEe--
Q psy18018 334 TLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAES-----GNLRHTLMGHQSL--------------TSGMELR-- 392 (635)
Q Consensus 334 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-----~~~~~~~~~~~~~--------------v~~l~~~-- 392 (635)
.........++|+|||++|+.+ .++.|++|++.+ ++.......+... +.+++|+
T Consensus 117 ----~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD 191 (706)
T 2z3z_A 117 ----FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK 191 (706)
T ss_dssp ----ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred ----cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence 0001123345699999999985 678999999998 7766554444332 3677776
Q ss_pred CCEEEEEeCC-CcEEEE---EccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEe--
Q psy18018 393 NNILVSGNAD-STVKVW---DIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMEL-- 464 (635)
Q Consensus 393 ~~~l~s~~~d-g~i~iw---d~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~-- 464 (635)
++.|++++.| ..+..+ +............+...+. ...+..|++||+.+++...... .|...+..+.|
T Consensus 192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT----PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS----CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC----CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC
Confidence 5566666532 222211 1111111100000000110 1134679999999887655442 46677888877
Q ss_pred cCCEEEEEeCCC-----cEEEEECCCCceeEEecCC--CcccccEEE--EEe--cCCEEEEEeCCCcEEEEECC-CCcee
Q psy18018 465 RNNILVSGNADS-----TVKVWDIVSGQCLQTLSGR--NKHQSAVTC--LQF--NSRFVITSSDDGTVKLWDVK-TGEFS 532 (635)
Q Consensus 465 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~~~~~v~~--~~~--~~~~l~~~~~d~~i~vwd~~-~~~~~ 532 (635)
+++.+++++.++ .|++||+.+++....+... ......+.. +.. |++++++++.|+.+++|++. ++...
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 567888877765 8999999988444333210 001111233 444 78899999999999999876 45544
Q ss_pred eeeccceecCceeEEeccCceec-ccccCCCeEEEEec-CCC----eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018 533 TPLMSSFILNPFYFLIYSQPLLC-PHLQFNSRFVITSS-DDG----TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS 606 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~-~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 606 (635)
..+.. +...+.. ++|+||++.|+.++ .++ .|..||+.+++ +..+ .+...+.+++||
T Consensus 348 ~~l~~-----------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l------~~~~~~~~~~~s 409 (706)
T 2z3z_A 348 RQVTK-----------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL------TPESGMHRTQLS 409 (706)
T ss_dssp EECCC-----------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES------CCSSSEEEEEEC
T ss_pred EecCC-----------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec------cCCCceEEEEEC
Confidence 44432 3445665 79999998776554 444 67778887776 3344 245568999999
Q ss_pred CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 607 ETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 607 ~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
|||++|+....+....-.++.+|.+
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEESS
T ss_pred CCCCEEEEEecCCCCCcEEEEEECC
Confidence 9999888775543322346777754
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=9.3e-20 Score=173.88 Aligned_cols=273 Identities=10% Similarity=0.013 Sum_probs=179.5
Q ss_pred CEEEEEeCCCeEEEEeCCCccceeeccccc---eeEEeeeccCCCEEE-EEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018 153 KLVVSGAYDYMVKIWNPDTEECLHAELQET---EVELSHGYALRSRIV-SGSDDNTLKVWSATTGKCLRTLIGHTGGVWS 228 (635)
Q Consensus 153 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 228 (635)
+++++++.+++|.+||+.+++.+..+.... ........+++..++ ++..++.|.+||+.+++.+..+.......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-- 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc--
Confidence 478899999999999999988777665444 333344445555554 45567899999998888776554211000
Q ss_pred EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA 308 (635)
Q Consensus 229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (635)
T Consensus 80 -------------------------------------------------------------------------------- 79 (337)
T 1pby_B 80 -------------------------------------------------------------------------------- 79 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec------------CCCeEEEEEccCCceE
Q psy18018 309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS------------LDTSIRVWEAESGNLR 376 (635)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~------------~dg~i~v~~~~~~~~~ 376 (635)
.......++++|++++++++. .++.|.+||+.+++.+
T Consensus 80 -------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 80 -------------------------------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp -------------------------------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred -------------------------------ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 000122345788888877775 5789999999888776
Q ss_pred EeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018 377 HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 456 (635)
Q Consensus 377 ~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 456 (635)
..+.. ...+.+++++ |++++++++ ++.+.+||+.+++....+..+.
T Consensus 129 ~~~~~-~~~~~~~~~s-------------------------------~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 129 KAFEA-PRQITMLAWA-------------------------------RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEC-CSSCCCEEEC-------------------------------TTSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEEeC-CCCcceeEEC-------------------------------CCCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 66554 2334445544 444444444 4556666666665555444332
Q ss_pred --ccEEEEEecCCEEEEEeCC-C-----------------------cEEEEECCCCceeEEecCCCcccccEEEEEe--c
Q psy18018 457 --SLTSGMELRNNILVSGNAD-S-----------------------TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--N 508 (635)
Q Consensus 457 --~~v~~~~~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~ 508 (635)
..+ .+++++..++..+.+ + .|.+||+.+++.. .+.. ..+...+.++++ +
T Consensus 175 ~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 175 WEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNPA 251 (337)
T ss_dssp TTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECTT
T ss_pred cCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECCC
Confidence 221 333444433332221 1 5789999988765 3221 124456777777 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018 509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 588 (635)
+++++++ ++.|++||+.+++....+.. ...+.+++|+||+++|++++.++.|++||+.+++.+..+
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNASIKRVPL------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTEEEEEEEC------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCEEEEe--CCeEEEEECCCCcCcceecC------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 8888888 78999999998876655432 345778999999999999999999999999999998887
Q ss_pred e
Q psy18018 589 V 589 (635)
Q Consensus 589 ~ 589 (635)
.
T Consensus 318 ~ 318 (337)
T 1pby_B 318 D 318 (337)
T ss_dssp E
T ss_pred E
Confidence 4
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=1.1e-18 Score=165.75 Aligned_cols=265 Identities=9% Similarity=0.028 Sum_probs=181.0
Q ss_pred EEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeC-CCcEEEEEccCCcc-eeEE----
Q psy18018 349 FQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNA-DSTVKVWDIVSGTK-KLMF---- 419 (635)
Q Consensus 349 ~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~-~~~~---- 419 (635)
|.++++ .+++...++.|.+||..+++.+..+..+.... .++++ ++.+++++. ++.|.+||+.+++. ....
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 445444 46778889999999999999988887776666 88886 555555554 89999999988875 3332
Q ss_pred -----EEEeeCCcEEEEEeCCC---cEEEEeCCCCceeeeeccCCccEEEEEe--cCC-EEEEEeCCCc-EEEEECCCCc
Q psy18018 420 -----RICLFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLTSGMEL--RNN-ILVSGNADST-VKVWDIVSGQ 487 (635)
Q Consensus 420 -----~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~-i~iwd~~~~~ 487 (635)
..++|++++++++..++ .|.+||+.+++.+..+..+.. ..++.+ +++ ++++...++. +.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 34789999999655553 899999999998887765443 466666 454 5555566688 9999987543
Q ss_pred eeEEec-CCCcccccEEEEEe--cCCEEE-EEeCCCcEEEEECCCCce---eeeeccceecCceeEEeccCceecccccC
Q psy18018 488 CLQTLS-GRNKHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKTGEF---STPLMSSFILNPFYFLIYSQPLLCPHLQF 560 (635)
Q Consensus 488 ~~~~~~-~~~~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (635)
.+.... ...........+++ ++++++ ++..++.|++||+.+++. +..+. ....+..++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~sp 230 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG------------TNNLPGTIVVSR 230 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE------------CSSCCCCEEECT
T ss_pred cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc------------CCCCCceEEECC
Confidence 331110 00013344677777 677554 455689999999998886 33332 245678899999
Q ss_pred CCeEEEEec-CCCeEEEEeCCCCce--EEeeeec--cCCCCCceEEEEEeCCCCeEEEEccCC-CeeEeEEEEEeee
Q psy18018 561 NSRFVITSS-DDGTVKLWDVKTGEF--IRNLVSL--DSGGSGGVVWRIRASETKLVCAVGSRN-GTEETKLLVLDFD 631 (635)
Q Consensus 561 ~~~~l~~~~-~d~~v~iwd~~~~~~--~~~~~~~--~~~~~~~~i~~l~~s~d~~~l~~~~~d-g~~~~~l~~~d~~ 631 (635)
||++|++++ .++.|.+||+.+++. +..+... ...........++|+|||++|++++.+ +. +.+||++
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~----v~v~d~~ 303 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRE----LKVFTIS 303 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTE----EEEEETT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCc----EEEEEec
Confidence 999776654 578899999999887 4333211 000111122568999999988766554 45 6666654
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.3e-18 Score=163.54 Aligned_cols=277 Identities=10% Similarity=0.061 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC-CCcEEEEECCCCeE-EEEEeCCCCCeEEE
Q psy18018 152 GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD-DNTLKVWSATTGKC-LRTLIGHTGGVWSS 229 (635)
Q Consensus 152 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-~~~~~~h~~~v~~~ 229 (635)
+..+++.+.++.|.+||+.+++.......+.........++++++++++. ++.|.+||+.+++. ...+..+..+.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--- 86 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM--- 86 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC---
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc---
Confidence 34577888899999999999887766555444344444455665666655 78999999887765 33333222111
Q ss_pred EeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhc
Q psy18018 230 QMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA 309 (635)
Q Consensus 230 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (635)
T Consensus 87 -------------------------------------------------------------------------------- 86 (331)
T 3u4y_A 87 -------------------------------------------------------------------------------- 86 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCC---eEEEEEccCCceEEeeeCCCcce
Q psy18018 310 QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDT---SIRVWEAESGNLRHTLMGHQSLT 386 (635)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~v~~~~~~~~~~~~~~~~~~v 386 (635)
..++++|++++++++..++ .|.+||+.+++.+..+..+. ..
T Consensus 87 -----------------------------------~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~ 130 (331)
T 3u4y_A 87 -----------------------------------ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DA 130 (331)
T ss_dssp -----------------------------------CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TE
T ss_pred -----------------------------------cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-Cc
Confidence 1145888888888655553 89999999888877766543 34
Q ss_pred eEEEEe--CC-EEEEEeCCCc-EEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEE
Q psy18018 387 SGMELR--NN-ILVSGNADST-VKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGM 462 (635)
Q Consensus 387 ~~l~~~--~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 462 (635)
.+++++ ++ ++++...++. +.+|++....... +. . ...+ ........+
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~------------------------~~---~-~~~~-~~~~~~~~~ 181 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF------------------------DT---G-QEFI-SGGTRPFNI 181 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE------------------------EE---E-EEEE-CSSSSEEEE
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEe------------------------ec---C-Cccc-cCCCCccce
Confidence 667765 22 2333333355 5555554221100 00 0 1111 222334556
Q ss_pred Ee--cCCEE-EEEeCCCcEEEEECCCCce---eEEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCce--
Q psy18018 463 EL--RNNIL-VSGNADSTVKVWDIVSGQC---LQTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEF-- 531 (635)
Q Consensus 463 ~~--~~~~l-~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~-- 531 (635)
.+ +++++ +++..++.|++||+.+++. +..+.. ...+..+++ +++++++++ .++.|.+||+.+++.
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence 65 56644 5555789999999999887 666663 244556666 688766554 578899999999876
Q ss_pred eeeeccceecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCce
Q psy18018 532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEF 584 (635)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~ 584 (635)
+..+.......+ ........++|+||+++|++++ .++.|.+||+.+...
T Consensus 258 ~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 258 VKSFGHGLLIDP----RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEECCCCCCC----GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ecccccccccCC----CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 222221100000 0111225589999999886554 567999999986553
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=1.1e-18 Score=166.79 Aligned_cols=262 Identities=11% Similarity=0.151 Sum_probs=169.9
Q ss_pred EEEEecCCCeEEEEEcc-CCce-EEeeeCCCcceeEEEEe--CCEEEEEeCC-CcEEEEEcc--CCcceeE---------
Q psy18018 355 HVVSGSLDTSIRVWEAE-SGNL-RHTLMGHQSLTSGMELR--NNILVSGNAD-STVKVWDIV--SGTKKLM--------- 418 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~-~~~~-~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~--~~~~~~~--------- 418 (635)
.+++++.++.|++|++. +++. ......+...+.+++++ ++.+++++.+ +.+.+|++. +++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 34455789999999995 3322 22223466778889997 6678888776 999999997 4443222
Q ss_pred -EEEEeeCCcEEEEEeC-CCcEEEEeCC---CCceeeeeccCCccEEEEEe--cCCEEEEEe-CCCcEEEEECCC-Ccee
Q psy18018 419 -FRICLFDGVHVVSGSL-DTSIRVWEAE---SGNLRHTLMGHQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVS-GQCL 489 (635)
Q Consensus 419 -~~~~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~-~~~~ 489 (635)
...++|+++++++++. ++.|.+||+. ..+....+..+. .+.++.+ +++.+++++ .++.|++||+.+ ++..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 1237889998877765 8889999994 344555555443 3555555 566777776 899999999987 5443
Q ss_pred E----EecCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceecccccC
Q psy18018 490 Q----TLSGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF 560 (635)
Q Consensus 490 ~----~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (635)
. .+.. .....+..++| ++++++++ ..++.|++|++.. ++............. ......+..++|+|
T Consensus 166 ~~~~~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 166 AQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN---FSDTRWAADIHITP 240 (343)
T ss_dssp EEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT---CCSCCCEEEEEECT
T ss_pred eeccccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc---ccccCCccceEECC
Confidence 2 2222 12345677888 57766555 4889999999954 432111100000000 00123456799999
Q ss_pred CCeEEE-EecCCCeEEEEeCC--CC--ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCCeeEeEEEEEee
Q psy18018 561 NSRFVI-TSSDDGTVKLWDVK--TG--EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNGTEETKLLVLDF 630 (635)
Q Consensus 561 ~~~~l~-~~~~d~~v~iwd~~--~~--~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~~~~~l~~~d~ 630 (635)
|+++|+ ++..++.|.+||+. ++ +.+..+. .+.. +..++|+|||++|++++ .++. +.+|.+|.
T Consensus 241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~-~~~~~~s~dg~~l~~~~~~~~~--v~v~~~d~ 308 (343)
T 1ri6_A 241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-----TETQ-PRGFNVDHSGKYLIAAGQKSHH--ISVYEIVG 308 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-----CSSS-CCCEEECTTSSEEEEECTTTCE--EEEEEEET
T ss_pred CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-----CCCc-cceEEECCCCCEEEEecCCCCe--EEEEEEcC
Confidence 998777 45578999999998 33 3333331 2223 88999999999888887 5676 56666664
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.6e-18 Score=163.26 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=187.4
Q ss_pred CcceEEEEe--cCCEEEEEeC-------CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECC
Q psy18018 142 LAAVRCVQY--DGKLVVSGAY-------DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSAT 211 (635)
Q Consensus 142 ~~~v~~l~~--~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~ 211 (635)
...+..++| +++++++++. ++.|.+||..+++.+..+............+++++++++ ..++.|.+||..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 345678888 7888888774 578999999999887776554444344445566655544 557899999999
Q ss_pred CCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccc
Q psy18018 212 TGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRE 291 (635)
Q Consensus 212 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (635)
+++.+..+..+...-.
T Consensus 120 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 135 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRT---------------------------------------------------------------- 135 (353)
T ss_dssp TCCEEEEEESCCCCCC----------------------------------------------------------------
T ss_pred CCeeEEEEecCCCccc----------------------------------------------------------------
Confidence 8888776654321100
Q ss_pred eeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec--CCCeEEEEE
Q psy18018 292 LALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS--LDTSIRVWE 369 (635)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~v~~ 369 (635)
..........++++|+++++++++ .++.|.+||
T Consensus 136 ---------------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 136 ---------------------------------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp ---------------------------------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred ---------------------------------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 000001112356888988877765 478899999
Q ss_pred ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee
Q psy18018 370 AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLR 449 (635)
Q Consensus 370 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 449 (635)
..+++.+..+..+...+.++++ +|+++++++++.++.+.+||..+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------s~dg~~l~~~~~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLAL-------------------------------DSEGKRLYTTNADGELITIDTADNKIL 219 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEE-------------------------------ETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred CCCCceEEEecCCCCccceEEE-------------------------------CCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence 9998888777644444444444 356666777777777888888877777
Q ss_pred eeecc----CCccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEe-CCC
Q psy18018 450 HTLMG----HQSLTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSS-DDG 519 (635)
Q Consensus 450 ~~~~~----~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~ 519 (635)
..+.. +...+.++.+ +++.+++++ .++.|.+||+.+++.+..+.... . ..+++ +++++++++ .++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~--~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---S--LAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---C--CCEEEETTTTEEEEEETTTT
T ss_pred EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---C--ceEEECCCCCEEEEEECCCC
Confidence 66553 4445655665 566665555 45999999999999888877522 2 23444 777655554 789
Q ss_pred cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC
Q psy18018 520 TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG 572 (635)
Q Consensus 520 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 572 (635)
.|.+||..+++.+..+.. ...+.+++|+||+++|+++..++
T Consensus 295 ~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDT------------PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEETTTTEEEEEEEC------------CSEEEEEEECTTSCEEEEEEECC
T ss_pred eEEEEECCCCeEEEEEec------------CCCCCeEEEcCCCCEEEEEEccc
Confidence 999999999887765543 34568899999999887776554
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=6.9e-19 Score=167.79 Aligned_cols=252 Identities=13% Similarity=0.105 Sum_probs=183.9
Q ss_pred cEEEEecCCCeEEEEEccCCceEEeeeCCCc--ceeEEEEe--CCEE-EEEeCCCcEEEEEccCCcceeEEE--------
Q psy18018 354 VHVVSGSLDTSIRVWEAESGNLRHTLMGHQS--LTSGMELR--NNIL-VSGNADSTVKVWDIVSGTKKLMFR-------- 420 (635)
Q Consensus 354 ~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~-------- 420 (635)
+++++++.++.|.+||..+++.+..+..... .+..++++ ++.+ ++...++.|.+||+.+++......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4688999999999999999988887764332 47788886 4454 556668899999998876554332
Q ss_pred ------EEeeCCcEEEEEe------------CCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEE
Q psy18018 421 ------ICLFDGVHVVSGS------------LDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKV 480 (635)
Q Consensus 421 ------~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~i 480 (635)
.++|++++++++. .++.|.+||+.+++....+... ..+.++.+ ++++++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCeEEE
Confidence 3678999998886 5799999999998887777643 23444444 66777776 688999
Q ss_pred EECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-C-----------------------cEEEEECCCCceeeeec
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-G-----------------------TVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-~-----------------------~i~vwd~~~~~~~~~~~ 536 (635)
||+.+++....+.... ...++ .+..+++.++..+.+ + .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~-~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQS-WEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTT-TTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred EECCCCcEeeeeeccc-cCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence 9999998887776422 11222 334466655444322 2 4789999988764 221
Q ss_pred cceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc
Q psy18018 537 SSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS 616 (635)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~ 616 (635)
...+...+.+++|+||+++++++ ++.|.+||+.+++.+..+. ....+.+++|+|||++|++++
T Consensus 236 ---------~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 236 ---------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------LPHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp ---------EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------CSSCCCEEEECTTSCEEEEES
T ss_pred ---------cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec------CCCceeeEEECCCCCEEEEEc
Confidence 12245567889999999999988 7999999999999887773 224578999999999999988
Q ss_pred CCCeeEeEEEEEeeec
Q psy18018 617 RNGTEETKLLVLDFDV 632 (635)
Q Consensus 617 ~dg~~~~~l~~~d~~~ 632 (635)
.++. |.+||.+.
T Consensus 299 ~~~~----i~v~d~~~ 310 (337)
T 1pby_B 299 ALGD----LAAYDAET 310 (337)
T ss_dssp BSSE----EEEEETTT
T ss_pred CCCc----EEEEECcC
Confidence 8887 66666643
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=2.6e-18 Score=164.29 Aligned_cols=219 Identities=12% Similarity=0.157 Sum_probs=124.6
Q ss_pred eEEEEecCcEEEEec-CCCeEEEEEcc---CCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 346 LFGFQFDGVHVVSGS-LDTSIRVWEAE---SGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~-~dg~i~v~~~~---~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
.++++|+++++++++ .++.|.+|++. ..+....+..+ ..+.+++++
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s----------------------------- 137 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS----------------------------- 137 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC-----------------------------
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC-----------------------------
Confidence 455888888776555 47889999884 23333333332 234455554
Q ss_pred EeeCCcEEEEEe-CCCcEEEEeCCC-Cceee----eecc-CCccEEEEEe--cCCEEE-EEeCCCcEEEEECCC--Cce-
Q psy18018 422 CLFDGVHVVSGS-LDTSIRVWEAES-GNLRH----TLMG-HQSLTSGMEL--RNNILV-SGNADSTVKVWDIVS--GQC- 488 (635)
Q Consensus 422 ~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~-~~~~v~~~~~--~~~~l~-s~~~dg~i~iwd~~~--~~~- 488 (635)
|+++++++++ .++.|.+||+.+ ++... .+.. ....+.++.+ ++++++ ++..++.|.+|++.. ++.
T Consensus 138 --~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 138 --PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp --TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred --CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 4454444444 555666666655 43321 1222 2235556666 456555 445889999999953 332
Q ss_pred -eEEecCC-C--cccccEEEEEe--cCCEEE-EEeCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceeccccc
Q psy18018 489 -LQTLSGR-N--KHQSAVTCLQF--NSRFVI-TSSDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559 (635)
Q Consensus 489 -~~~~~~~-~--~~~~~v~~~~~--~~~~l~-~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 559 (635)
...+... . .....+..++| ++++|+ +...++.|++||+.. +.... .. .......+..++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~-~~---------~~~~~~~~~~~~~s 285 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK-EG---------FQPTETQPRGFNVD 285 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE-EE---------EEECSSSCCCEEEC
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE-ee---------eecCCCccceEEEC
Confidence 2222211 1 11234566777 577776 455789999999983 22111 10 11122348899999
Q ss_pred CCCeEEEEec-CCCeEEEEe--CCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018 560 FNSRFVITSS-DDGTVKLWD--VKTGEFIRNLVSLDSGGSGGVVWRIRASETKL 610 (635)
Q Consensus 560 ~~~~~l~~~~-~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 610 (635)
|++++|++++ .++.|.+|+ ..+++.. .+..+. ......+++|.|+.+
T Consensus 286 ~dg~~l~~~~~~~~~v~v~~~d~~~g~~~-~~~~~~---~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 286 HSGKYLIAAGQKSHHISVYEIVGEQGLLH-EKGRYA---VGQGPMWVVVNAHEG 335 (343)
T ss_dssp TTSSEEEEECTTTCEEEEEEEETTTTEEE-EEEEEE---CSSSCCEEEEEEEC-
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCceee-Eccccc---cCCCCeeEEEEcccC
Confidence 9999888877 689999994 4466432 222211 123455777777654
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.9e-19 Score=168.26 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=151.2
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccC-CceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~-~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
...++|+|+++++++++ ++.|++||+.+ ++.......+. ..+.+++|+
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s----------------------------- 93 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS----------------------------- 93 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC-----------------------------
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC-----------------------------
Confidence 33456889999888876 77999999998 77766665553 456666664
Q ss_pred EeeCCcEEEEEe--CC--CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEE-EEeCCCcEEEEEC--CCCceeEEe
Q psy18018 422 CLFDGVHVVSGS--LD--TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILV-SGNADSTVKVWDI--VSGQCLQTL 492 (635)
Q Consensus 422 ~~~~~~~l~~~~--~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-s~~~dg~i~iwd~--~~~~~~~~~ 492 (635)
|+++++++++ .+ ..|..++..+++ ...+..+. .+..+.+ +++.++ +++.++.+++|++ .+++ ...+
T Consensus 94 --pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~ 168 (297)
T 2ojh_A 94 --PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRL 168 (297)
T ss_dssp --TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEEC
T ss_pred --CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEc
Confidence 4445555554 22 234444444444 23333333 3666666 566665 7888999999985 3333 3444
Q ss_pred cCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018 493 SGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS 568 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 568 (635)
.. +...+.+++| ++++++.++ .++.+++|++. .+.....+.. +...+.+++|+||+++|+++
T Consensus 169 ~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 169 TH---GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-----------SAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp CC---SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-----------CSEEEEEEEECTTSSEEEEE
T ss_pred cc---CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-----------CCcccCCeEECCCCCEEEEE
Confidence 43 6677888888 678777665 58999999986 3433333322 34567889999999999988
Q ss_pred cCC-----------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCC
Q psy18018 569 SDD-----------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNG 619 (635)
Q Consensus 569 ~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg 619 (635)
+.+ +.|.+||+.+++....... .++...+..++|+|||++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL---FGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE---EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeecc---CCCCcccccceECCCCCEEEEEEecc
Confidence 765 5699999998876433321 24567788999999999998887764
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=3.3e-19 Score=188.78 Aligned_cols=332 Identities=9% Similarity=-0.005 Sum_probs=210.5
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC---CeEEEEe--eCCEEEEeeCc---------eeEEEecccceee
Q psy18018 190 YALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG---GVWSSQM--AGNIIISGSTD---------RTLKGWSNAERIL 255 (635)
Q Consensus 190 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~--~~~~l~s~~~d---------g~i~~w~~~~~~~ 255 (635)
.+++.++ ..+.||.|++||+.+++....+..|.. .|.+++| +|++|++++.+ +.+.+||+.++..
T Consensus 25 spdg~~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 25 ISDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred cCCCcEE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 3444544 457899999999999998888877765 4888888 58899998764 7888999876532
Q ss_pred eccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhh
Q psy18018 256 AIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATL 335 (635)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (635)
... ..
T Consensus 104 ~~l---~~------------------------------------------------------------------------ 108 (723)
T 1xfd_A 104 QSL---DP------------------------------------------------------------------------ 108 (723)
T ss_dssp EEC---CC------------------------------------------------------------------------
T ss_pred Eec---cC------------------------------------------------------------------------
Confidence 000 00
Q ss_pred ccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce------------------eEEEEe--CCE
Q psy18018 336 HRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT------------------SGMELR--NNI 395 (635)
Q Consensus 336 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v------------------~~l~~~--~~~ 395 (635)
...........+|||||++|+.++. +.|++|++.+++.......+...+ .+++|+ ++.
T Consensus 109 -~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~ 186 (723)
T 1xfd_A 109 -PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR 186 (723)
T ss_dssp -TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred -CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE
Confidence 0001112334669999999999886 789999999888776665544433 678887 567
Q ss_pred EEEEeCC-CcEEEEEccCCcc----eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC------CccEEEEEe
Q psy18018 396 LVSGNAD-STVKVWDIVSGTK----KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH------QSLTSGMEL 464 (635)
Q Consensus 396 l~s~~~d-g~i~iwd~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~ 464 (635)
|++++.+ +.+.+|++..... ......+.++|.. ..+..|++||+.+++....+..+ ...+..+.|
T Consensus 187 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence 7777654 5677777643211 1112223334431 23348999999988865666654 566777777
Q ss_pred --cCCEEEEEeC----CCcEEEEECCCCceeEEecCCCcccccE----EEEEe--cCCEEEE--EeCCC------cEEEE
Q psy18018 465 --RNNILVSGNA----DSTVKVWDIVSGQCLQTLSGRNKHQSAV----TCLQF--NSRFVIT--SSDDG------TVKLW 524 (635)
Q Consensus 465 --~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~--~~~~l~~--~~~d~------~i~vw 524 (635)
+++++++... +..|++||+.+++....+... +...+ ..++| ||+.|+. +..++ .|.+|
T Consensus 263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred eCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEE
Confidence 4557766543 357999999998876655321 11211 24455 7886664 45666 56777
Q ss_pred E-CCCCce--eeeeccceecCceeEEeccCceec-ccccCCCeEEEEecCC---CeEEEEeCCCCc--eEEeeeeccCCC
Q psy18018 525 D-VKTGEF--STPLMSSFILNPFYFLIYSQPLLC-PHLQFNSRFVITSSDD---GTVKLWDVKTGE--FIRNLVSLDSGG 595 (635)
Q Consensus 525 d-~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---~~v~iwd~~~~~--~~~~~~~~~~~~ 595 (635)
| ..+++. ...+.. ....+.. ++|+|||++|+..+.+ +.++||++.... ....+.. ...
T Consensus 341 d~~~~~~~~~~~~l~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~--~~~ 407 (723)
T 1xfd_A 341 SSQPNSSNDNIQSITS-----------GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC--DLV 407 (723)
T ss_dssp CSSCCSSSCCCCBSCC-----------SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST--TSS
T ss_pred eccCCCCccceeEeec-----------CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc--ccc
Confidence 7 344331 222221 1223333 6899999998766554 789999986532 2333310 001
Q ss_pred CCceEEEEEeCCCCeEEEEccCC
Q psy18018 596 SGGVVWRIRASETKLVCAVGSRN 618 (635)
Q Consensus 596 ~~~~i~~l~~s~d~~~l~~~~~d 618 (635)
+...+..++|+|||++|+.....
T Consensus 408 ~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 408 ENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp SSCCCCEEEECTTSSEEEEECCS
T ss_pred CCCCeEEEEECCCCCEEEEEccC
Confidence 45678899999999988875443
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.2e-18 Score=177.11 Aligned_cols=260 Identities=10% Similarity=0.111 Sum_probs=190.2
Q ss_pred CCCceEEEEecCcEEEEecC-CCeEEEEEccCCceEEeeeCCC-cceeEEEEeCC-EEEEEeC---CCcEEEEEccC---
Q psy18018 342 HVPDLFGFQFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNN-ILVSGNA---DSTVKVWDIVS--- 412 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~-~l~s~~~---dg~i~iwd~~~--- 412 (635)
.....++++|||++|+.++. +|.+.+|++.+++... +..|. ..+..++|+++ .+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 34567889999999998877 9999999997666544 44444 68899999855 4555554 45566765543
Q ss_pred -Ccc------eeEEEEEeeCCcE-EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCC----CcEEE
Q psy18018 413 -GTK------KLMFRICLFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD----STVKV 480 (635)
Q Consensus 413 -~~~------~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~i~i 480 (635)
... ......++|+++. +++...++.+.+||+.+++.......+. .-..++++|+++++++.+ +.|++
T Consensus 101 g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 101 GEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp TCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred CccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence 111 1223467888864 3344455556699999887665554443 444566789999988877 78999
Q ss_pred EECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 556 (635)
||+.+++.. .+.. +...+..++| ||++|+++..++ .|++||+.+++.. .+.. +...+..+
T Consensus 180 ~d~~~g~~~-~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-----------~~~~~~~~ 243 (582)
T 3o4h_A 180 SNLSSGGLR-VFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-----------PSKDFSSY 243 (582)
T ss_dssp EETTTCCCE-EECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-----------SCSHHHHH
T ss_pred EcCCCCCce-Eeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-----------CCcChhhh
Confidence 999888754 4554 6677888888 799999888888 8999999988765 3322 45566777
Q ss_pred c--------ccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 557 H--------LQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 557 ~--------~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
+ |+|||.++++++.|+++++|++ |+.+.. ..+.+.+++|+ |++++++++.+.. .-.+|.+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--------~~~~v~~~~~s-dg~~l~~~s~~~~-p~~l~~~ 311 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--------PQGNHGRVVLW-RGKLVTSHTSLST-PPRIVSL 311 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--------CSSEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--------CCCceEEEEec-CCEEEEEEcCCCC-CCeEEEE
Confidence 7 9999999999999999999999 665431 23578999999 9999998888775 3567877
Q ss_pred eee
Q psy18018 629 DFD 631 (635)
Q Consensus 629 d~~ 631 (635)
|.+
T Consensus 312 d~~ 314 (582)
T 3o4h_A 312 PSG 314 (582)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=7.6e-19 Score=186.01 Aligned_cols=271 Identities=10% Similarity=0.037 Sum_probs=190.5
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeCC---------CcEEEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNAD---------STVKVWD 409 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~d---------g~i~iwd 409 (635)
...++|+|||+++++ +.||.|++||..+++....+..|.. .+.+++|+ ++.|++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 455679999997766 7899999999999998888877765 48999997 6788888764 6788999
Q ss_pred ccCCccee-----------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccE------------------E
Q psy18018 410 IVSGTKKL-----------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT------------------S 460 (635)
Q Consensus 410 ~~~~~~~~-----------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v------------------~ 460 (635)
+.+++... ....++|||+.|+.++. +.|++||+.+++.......+...+ .
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 98876421 12348999999999886 789999999988776665544322 4
Q ss_pred EEEe--cCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEecCCC---ccccc
Q psy18018 461 GMEL--RNNILVSGNADS----------------------------------TVKVWDIVSGQCLQTLSGRN---KHQSA 501 (635)
Q Consensus 461 ~~~~--~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~---~~~~~ 501 (635)
++.| +++.|++++.|+ .|++||+.+++....+.... .+...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 5665 677888877543 79999999887655555311 12566
Q ss_pred EEEEEe--cCCEEEEEeC----CCcEEEEECCCCceeeeeccceecCceeEEeccCce----ecccccCCCeEEEE--ec
Q psy18018 502 VTCLQF--NSRFVITSSD----DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL----LCPHLQFNSRFVIT--SS 569 (635)
Q Consensus 502 v~~~~~--~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~--~~ 569 (635)
+..++| ||+++++.+. +..|++||+.+++........ +...+ ..++|||||+.|+. +.
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE----------SEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE----------CSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec----------cCCEEeccCCCceEcCCCCeEEEEEec
Confidence 788888 6888877653 357999999998765443221 22222 37899999997775 45
Q ss_pred CCC------eEEEEe-CCCCce--EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC---CeeEeEEEEEeeec
Q psy18018 570 DDG------TVKLWD-VKTGEF--IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN---GTEETKLLVLDFDV 632 (635)
Q Consensus 570 ~d~------~v~iwd-~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d---g~~~~~l~~~d~~~ 632 (635)
.++ .|.+|| ..+++. ...+. .++......++|+|||+.|+..+.+ +. ++||.++.+.
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--~~l~~~~~~~ 395 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSIT----SGDWDVTKILAYDEKGNKIYFLSTEDLPRR--RQLYSANTVG 395 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSC----CSSSCEEEEEEEETTTTEEEEEESSSCTTC--CEEEEECSST
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEee----cCCeEEEeeeEEcCCCCEEEEEEcCCCCcc--eEEEEEeCCC
Confidence 666 577777 344441 44442 1233333347999999998766554 44 7788887643
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=2.5e-17 Score=153.73 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred EEEEecCcEEEEec--CCCeEEEEE--ccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018 347 FGFQFDGVHVVSGS--LDTSIRVWE--AESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC 422 (635)
Q Consensus 347 ~~~s~~~~~l~~~~--~dg~i~v~~--~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 422 (635)
++|+|+++++++++ .++...+|. ..++. ...+..+. .+..++|
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~------------------------------- 136 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGW------------------------------- 136 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEE-------------------------------
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEE-------------------------------
Confidence 45888888888887 334444444 44443 22333222 2444444
Q ss_pred eeCCcEEE-EEeCCCcEEEEeCCC-CceeeeeccCCccEEEEEec--CCEEEEEe-CCCcEEEEECC-CCceeEEecCCC
Q psy18018 423 LFDGVHVV-SGSLDTSIRVWEAES-GNLRHTLMGHQSLTSGMELR--NNILVSGN-ADSTVKVWDIV-SGQCLQTLSGRN 496 (635)
Q Consensus 423 ~~~~~~l~-~~~~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~ 496 (635)
+|++++++ ++..++.+++|++.. +.....+..+...+.++.++ ++.++.++ .++.+++|++. .+.....+..
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 214 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-- 214 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--
Confidence 45555555 455666666766422 23345566677788888874 56666555 58999999886 4555666655
Q ss_pred cccccEEEEEe--cCCEEEEEeCC-----------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 497 KHQSAVTCLQF--NSRFVITSSDD-----------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 497 ~~~~~v~~~~~--~~~~l~~~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
+...+.+++| ++++|++++.+ +.|++||+.+++...... ...|...+.+++|+||++
T Consensus 215 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 215 -SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD---------LFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp -CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE---------EEESTTTSCSCCBCTTSS
T ss_pred -CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec---------cCCCCcccccceECCCCC
Confidence 6667888888 68888888766 569999999876433221 113567899999999999
Q ss_pred EEEEecCCC
Q psy18018 564 FVITSSDDG 572 (635)
Q Consensus 564 ~l~~~~~d~ 572 (635)
+|++++.+.
T Consensus 285 ~l~~~~~~~ 293 (297)
T 2ojh_A 285 EFAYVRYFP 293 (297)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 998887653
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=3.7e-16 Score=150.15 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=166.0
Q ss_pred CCCceEEEEecCcEEEEecCC----CeEEEEEccC--Cc--eEEeeeCCCcceeEEEEeCCEEEEEe-CCCcEEEEEccC
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLD----TSIRVWEAES--GN--LRHTLMGHQSLTSGMELRNNILVSGN-ADSTVKVWDIVS 412 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~d----g~i~v~~~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~s~~-~dg~i~iwd~~~ 412 (635)
..+..++++|++++|++++.+ +.|.+|++.. ++ .+.....+......++++++.++++. .++.+.+|++..
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCC
Confidence 344557899999999988875 7999999875 43 23344445566777777877777665 678999999875
Q ss_pred Cccee-----------------------EEEEEeeCCcEEEEEe-CCCcEEEEeCCCCc-------ee------eeeccC
Q psy18018 413 GTKKL-----------------------MFRICLFDGVHVVSGS-LDTSIRVWEAESGN-------LR------HTLMGH 455 (635)
Q Consensus 413 ~~~~~-----------------------~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~-------~~------~~~~~~ 455 (635)
..... ....++|+|+++++++ .++.+.+|++.... +. .....+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 32211 2256899999777665 47899999887543 21 112223
Q ss_pred CccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCce--eEEecCCCcccccEEEEEe--cCCEEEEEeCC--CcEEEEEC
Q psy18018 456 QSLTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSDD--GTVKLWDV 526 (635)
Q Consensus 456 ~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d--~~i~vwd~ 526 (635)
......+.+ +++++++++ .++.|.+|++.+++. +..+.....+......++| |+++|+++..+ +.|.+|++
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 344566666 566776666 689999999987654 3333332223344567777 78888776654 89999999
Q ss_pred C--CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEE--eCCCCceEEeeeeccCCCCCceEE
Q psy18018 527 K--TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLW--DVKTGEFIRNLVSLDSGGSGGVVW 601 (635)
Q Consensus 527 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~i~ 601 (635)
. +++...... ......+..++|+|||++|++++ .++.|.+| |.++++...... ..+...+.
T Consensus 290 ~~~~g~~~~~~~----------~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~----~~~~~~p~ 355 (361)
T 3scy_A 290 DETNGTLTKVGY----------QLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK----DIKVDKPV 355 (361)
T ss_dssp CTTTCCEEEEEE----------EECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC----CEECSSEE
T ss_pred cCCCCcEEEeeE----------ecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce----eeeCCCCe
Confidence 6 344221111 11134577899999999888887 67899995 556777654332 12334678
Q ss_pred EEEeC
Q psy18018 602 RIRAS 606 (635)
Q Consensus 602 ~l~~s 606 (635)
+++|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88885
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=1.6e-16 Score=151.89 Aligned_cols=257 Identities=16% Similarity=0.189 Sum_probs=160.1
Q ss_pred CCeEEEEEcc--CCceEE-eeeCCCcceeEEEEe--CCEEEEEeC---CCcEEEEEccCCcceeEE-----------EEE
Q psy18018 362 DTSIRVWEAE--SGNLRH-TLMGHQSLTSGMELR--NNILVSGNA---DSTVKVWDIVSGTKKLMF-----------RIC 422 (635)
Q Consensus 362 dg~i~v~~~~--~~~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~-----------~~~ 422 (635)
++.|.+|+++ +++... ....+......++++ ++ +++++. ++.|.+|++.+++..... ..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567777765 454432 233445667778887 44 555544 689999999766532222 236
Q ss_pred eeCCcEEEEEe-CCCcEEEEeCCC-Cc--eeeeeccC---------CccEEEEEe--cCCEEEEEeCCCcEEEEECC-CC
Q psy18018 423 LFDGVHVVSGS-LDTSIRVWEAES-GN--LRHTLMGH---------QSLTSGMEL--RNNILVSGNADSTVKVWDIV-SG 486 (635)
Q Consensus 423 ~~~~~~l~~~~-~d~~i~~~d~~~-~~--~~~~~~~~---------~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~-~~ 486 (635)
+|++++|++++ .++.+.+|++.. +. .+..+... ...+.++.+ +++++++...++.|++|++. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 88999998888 778999999963 33 22332211 123555666 56777777778999999998 45
Q ss_pred ceeE--EecCCCcccccEEEEEe--cCCEEEE-EeCCCcEEEEECCC--CceeeeeccceecCceeEEeccCceeccccc
Q psy18018 487 QCLQ--TLSGRNKHQSAVTCLQF--NSRFVIT-SSDDGTVKLWDVKT--GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQ 559 (635)
Q Consensus 487 ~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~-~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 559 (635)
+... .+.. ........++| ||+++++ ...++.+++|++.. ++........ ..+.. ......+..++|+
T Consensus 174 ~~~~~~~~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~--~~~~~-~~~~~~~~~i~~s 248 (347)
T 3hfq_A 174 QLSEQSVLTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK--TIPAD-YTAHNGAAAIRLS 248 (347)
T ss_dssp CEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--SSCTT-CCSCCEEEEEEEC
T ss_pred cEEEeeeEEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee--ecCCC-CCCCCcceeEEEC
Confidence 4332 1221 12234566777 6886555 56788999999874 4322111100 00000 0011347789999
Q ss_pred CCCeEEE-EecCCCeEEEEeCCCC---ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC-CeeEeEEEEEeee
Q psy18018 560 FNSRFVI-TSSDDGTVKLWDVKTG---EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN-GTEETKLLVLDFD 631 (635)
Q Consensus 560 ~~~~~l~-~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d-g~~~~~l~~~d~~ 631 (635)
|||++|+ +...++.|.+||+... +.+..+ ..+...+..++|+|||++|++++.+ +. +.+|.+|.+
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~~~~~~~--v~v~~~d~~ 318 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-----STEGDFPRDFDLDPTEAFVVVVNQNTDN--ATLYARDLT 318 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-----ECSSSCCCEEEECTTSSEEEEEETTTTE--EEEEEECTT
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-----ecCCCCcCeEEECCCCCEEEEEEcCCCc--EEEEEEeCC
Confidence 9999874 5556899999999733 333333 2344567899999999988888765 55 556655543
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=4.2e-18 Score=166.46 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=116.8
Q ss_pred CCccEEEEEec--CCEEE----EEeCCCcEEEEECCCC--------ceeEEecCCCcccccEEEEEec---CCEEEEEeC
Q psy18018 455 HQSLTSGMELR--NNILV----SGNADSTVKVWDIVSG--------QCLQTLSGRNKHQSAVTCLQFN---SRFVITSSD 517 (635)
Q Consensus 455 ~~~~v~~~~~~--~~~l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~ 517 (635)
+...|.+++|+ +++|+ +++.|+.|++||+.++ +.+..+.....|...|.+++|+ +.+|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 56679999885 66888 7889999999998764 3333333334488999999993 679999999
Q ss_pred CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC--CC
Q psy18018 518 DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS--GG 595 (635)
Q Consensus 518 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~ 595 (635)
||+|++||++++...... ..|...|++++|+|+|++|++|+.||+|++||++ ++....+..... ..
T Consensus 171 Dg~v~iwD~~~~~~~~~~-----------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCAT-----------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp TSCEEEEEESSSEEEEEE-----------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred CCeEEEEEcCCCcceeec-----------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence 999999999987543222 2367899999999999999999999999999998 665555532211 12
Q ss_pred CCceEEEEEeCCCCeEEEE-ccCCCe
Q psy18018 596 SGGVVWRIRASETKLVCAV-GSRNGT 620 (635)
Q Consensus 596 ~~~~i~~l~~s~d~~~l~~-~~~dg~ 620 (635)
|...|.+++|++++.++++ ...+|.
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred CceeEEEEEEecCceEEEEEccCCCc
Confidence 3458999999999998854 334444
No 153
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.5e-15 Score=144.69 Aligned_cols=245 Identities=12% Similarity=0.100 Sum_probs=167.1
Q ss_pred EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCC------CcceeEEEEe--CCEEEEEeC--CCcEE
Q psy18018 347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGH------QSLTSGMELR--NNILVSGNA--DSTVK 406 (635)
Q Consensus 347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~------~~~v~~l~~~--~~~l~s~~~--dg~i~ 406 (635)
++++||++++++++ .++.|.+||..+.+.+..+... ......++++ +++|+++.. ++.|.
T Consensus 55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~ 134 (361)
T 2oiz_A 55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG 134 (361)
T ss_dssp EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence 34788888887775 2567999999888888776532 2345567775 678887763 68899
Q ss_pred EEEccCCcceeE-E-------EEEeeCC-cEEEEEeCCCcEEEEeCCC-Cceeee------eccCCccEE-EEEecCCEE
Q psy18018 407 VWDIVSGTKKLM-F-------RICLFDG-VHVVSGSLDTSIRVWEAES-GNLRHT------LMGHQSLTS-GMELRNNIL 469 (635)
Q Consensus 407 iwd~~~~~~~~~-~-------~~~~~~~-~~l~~~~~d~~i~~~d~~~-~~~~~~------~~~~~~~v~-~~~~~~~~l 469 (635)
+||+.+++.... . ....|++ ..+++.+.||.+.+++... ++.... +..+..++. ....++..+
T Consensus 135 v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (361)
T 2oiz_A 135 IVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA 214 (361)
T ss_dssp EEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred EEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence 999998865543 1 1234544 6778888999999999865 554421 222222211 123456667
Q ss_pred EEEeCCCcEEEEECCCCce--eEEecCCC---------cccccEEEEEecCCEEEEEeC-----------CCcEEEEECC
Q psy18018 470 VSGNADSTVKVWDIVSGQC--LQTLSGRN---------KHQSAVTCLQFNSRFVITSSD-----------DGTVKLWDVK 527 (635)
Q Consensus 470 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~---------~~~~~v~~~~~~~~~l~~~~~-----------d~~i~vwd~~ 527 (635)
+..+.++.+.++|+..... ...+.... ........+..+++.++++.. ++.|.+||+.
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 7777889999999875432 22221100 011112234446677666543 3489999999
Q ss_pred CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC--ceEEeeeeccCCCCCceEEEEEe
Q psy18018 528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG--EFIRNLVSLDSGGSGGVVWRIRA 605 (635)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~i~~l~~ 605 (635)
+++.+..+..+ . ..+++|+|||++|++++. +.|.+||+.++ +.+..+ .........+++
T Consensus 295 t~~~v~~i~~~-----------~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-----~~~G~~P~~~~~ 355 (361)
T 2oiz_A 295 TKQRVARIPGR-----------D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI-----EGAAEASLQVQF 355 (361)
T ss_dssp TTEEEEEEECT-----------T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE-----TTSCSSEEEEEE
T ss_pred CCcEEEEEecC-----------C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe-----ccCCCCcEEEEe
Confidence 99988776542 2 888999999999998887 99999999999 988887 345667789999
Q ss_pred CCCCe
Q psy18018 606 SETKL 610 (635)
Q Consensus 606 s~d~~ 610 (635)
+|||+
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=3.1e-17 Score=160.31 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=139.2
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCce----------EEe-----eeCCCcceeEEEEeCCEEEEEeCCCcEE
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL----------RHT-----LMGHQSLTSGMELRNNILVSGNADSTVK 406 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----------~~~-----~~~~~~~v~~l~~~~~~l~s~~~dg~i~ 406 (635)
.....+++++++.++++++.++ +++|+...... +.. ...+...|.+++|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-------------- 101 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-------------- 101 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC--------------
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc--------------
Confidence 3467788999999999999887 88887642111 000 01223345555554
Q ss_pred EEEccCCcceeEEEEEeeCCcEEE----EEeCCCcEEEEeCCCC--------c---eeeeeccCCccEEEEEec---CCE
Q psy18018 407 VWDIVSGTKKLMFRICLFDGVHVV----SGSLDTSIRVWEAESG--------N---LRHTLMGHQSLTSGMELR---NNI 468 (635)
Q Consensus 407 iwd~~~~~~~~~~~~~~~~~~~l~----~~~~d~~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~~---~~~ 468 (635)
+++++|+ +++.|+.|++||+.++ + ....+.+|...|.+++|+ +++
T Consensus 102 -----------------pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 102 -----------------CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp -----------------TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred -----------------CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence 4555555 4455556666655432 1 245567799999999995 458
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeE
Q psy18018 469 LVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546 (635)
Q Consensus 469 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 546 (635)
+++++.||+|++||++++........ |...|.+++| ++++|++|+.||.|++||.+ ++....+..+....
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~---~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~---- 236 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLP---STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE---- 236 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEEC---GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC----
T ss_pred EEEEECCCeEEEEEcCCCcceeeccC---CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC----
Confidence 99999999999999998876655554 7889999999 68999999999999999998 55444433221100
Q ss_pred EeccCceecccccCCCeEEEEe-cCCC------eEEEEeCCCC
Q psy18018 547 LIYSQPLLCPHLQFNSRFVITS-SDDG------TVKLWDVKTG 582 (635)
Q Consensus 547 ~~~~~~v~~~~~s~~~~~l~~~-~~d~------~v~iwd~~~~ 582 (635)
..|...|.+++|++++.++++. ..|| .+++|++.+.
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 0133478999999999988653 3443 3999999865
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=1.1e-15 Score=146.87 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=163.9
Q ss_pred cEEEEec----CCCeEEEEEcc--CCceEEeeeCCCcceeEEEEe--CCEEEEEeCC----CcEEEEEccCC--cceeEE
Q psy18018 354 VHVVSGS----LDTSIRVWEAE--SGNLRHTLMGHQSLTSGMELR--NNILVSGNAD----STVKVWDIVSG--TKKLMF 419 (635)
Q Consensus 354 ~~l~~~~----~dg~i~v~~~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d----g~i~iwd~~~~--~~~~~~ 419 (635)
.++++|+ .++.|.+|+++ +++.......+......++++ +++|++++.+ +.+.+|++... +.....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 4555653 45689998764 455433222266677778887 6688888875 79999998763 221111
Q ss_pred E---------EEeeCCcEEEEEe-CCCcEEEEeCCCCceeeee------cc--------CCccEEEEEe--cCCEEEEE-
Q psy18018 420 R---------ICLFDGVHVVSGS-LDTSIRVWEAESGNLRHTL------MG--------HQSLTSGMEL--RNNILVSG- 472 (635)
Q Consensus 420 ~---------~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~------~~--------~~~~v~~~~~--~~~~l~s~- 472 (635)
. ....+++++++++ .++.+.+|++.....+..+ .+ +...+.++.+ ++++++++
T Consensus 94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 1 1233788777776 5789999999754332211 11 1122355555 56655554
Q ss_pred eCCCcEEEEECCCCce------e------EEecCCCcccccEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeeeecc
Q psy18018 473 NADSTVKVWDIVSGQC------L------QTLSGRNKHQSAVTCLQF--NSRFVITSS-DDGTVKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 473 ~~dg~i~iwd~~~~~~------~------~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~ 537 (635)
..++.|.+|++..... + ..... ........++| +++++++++ .++.|.+|++.+++.......
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV--APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceec--CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 4588999998875431 1 11111 13344667777 688887777 689999999987654221111
Q ss_pred ceecCceeEEeccCceecccccCCCeEEEEecCC--CeEEEEeCC--CCc--eEEeeeeccCCCCCceEEEEEeCCCCeE
Q psy18018 538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--GTVKLWDVK--TGE--FIRNLVSLDSGGSGGVVWRIRASETKLV 611 (635)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~v~iwd~~--~~~--~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 611 (635)
. ..+ .+......++|+|||++|+++..+ +.|.+|++. +++ .+..+. . ...+..++|+|||++
T Consensus 252 ~--~~~----~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-----~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 252 A--ADT----VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-----T-GIHPRNFIITPNGKY 319 (361)
T ss_dssp E--SCS----SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-----C-SSCCCEEEECTTSCE
T ss_pred e--cCC----CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-----C-CCCCceEEECCCCCE
Confidence 0 000 112345789999999998776654 899999995 455 333331 2 456779999999998
Q ss_pred EEEcc-CCCeeEeEEEEEeee
Q psy18018 612 CAVGS-RNGTEETKLLVLDFD 631 (635)
Q Consensus 612 l~~~~-~dg~~~~~l~~~d~~ 631 (635)
|++++ .++. +.+|.+|.+
T Consensus 320 l~~~~~~~~~--v~v~~~d~~ 338 (361)
T 3scy_A 320 LLVACRDTNV--IQIFERDQA 338 (361)
T ss_dssp EEEEETTTTE--EEEEEECTT
T ss_pred EEEEECCCCC--EEEEEEECC
Confidence 88887 4555 667767653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=5.3e-16 Score=148.51 Aligned_cols=262 Identities=8% Similarity=0.004 Sum_probs=180.6
Q ss_pred cCCEEEEEeCCCeEEEEeCCCccceeeccccc--eeEEeeeccCCCEEE-EEeCCCcEEEEECCCCeEEEEEeCCC----
Q psy18018 151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQET--EVELSHGYALRSRIV-SGSDDNTLKVWSATTGKCLRTLIGHT---- 223 (635)
Q Consensus 151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~h~---- 223 (635)
++..+++++.+++|.+||+.+++.+..+..+. ........++++.++ +...++.|.+||+.+++.+..+..+.
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 67788999999999999999998877665444 344444455666555 45578999999999999888776433
Q ss_pred --CCeEEEEe--eCCEEEEeeCc------------eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 224 --GGVWSSQM--AGNIIISGSTD------------RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 224 --~~v~~~~~--~~~~l~s~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
..+..+++ +++++++++.+ +.|.+||+.+......
T Consensus 90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----------------------------- 140 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----------------------------- 140 (349)
T ss_dssp EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-----------------------------
T ss_pred ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce-----------------------------
Confidence 23666777 57789888866 8999999876321000
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 367 (635)
............++++|+++ +++++. .|.+
T Consensus 141 -----------------------------------------------~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~ 170 (349)
T 1jmx_B 141 -----------------------------------------------VRTFPMPRQVYLMRAADDGS-LYVAGP--DIYK 170 (349)
T ss_dssp -----------------------------------------------SEEEECCSSCCCEEECTTSC-EEEESS--SEEE
T ss_pred -----------------------------------------------eeeccCCCcccceeECCCCc-EEEccC--cEEE
Confidence 00000111344567999999 555543 4999
Q ss_pred EEccCCceEEeeeCCCc------------------------ceeEEEEeC-------------CEEEEEeCCCcEEEEEc
Q psy18018 368 WEAESGNLRHTLMGHQS------------------------LTSGMELRN-------------NILVSGNADSTVKVWDI 410 (635)
Q Consensus 368 ~~~~~~~~~~~~~~~~~------------------------~v~~l~~~~-------------~~l~s~~~dg~i~iwd~ 410 (635)
||..+++.+..+..+.. ....+++.. .++.....++.+.+|++
T Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 99999988777654320 122233321 12224445677777777
Q ss_pred cCCcceeEEEEEee-CCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q psy18018 411 VSGTKKLMFRICLF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 411 ~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~ 487 (635)
...........++| ++++++++ ++.|.+||+.+++.+..+.... .+.++++ ++++|++++.++.|++||+.+++
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 65555555666889 99999888 8899999999998877776432 3445555 56677778889999999999999
Q ss_pred eeEEecC
Q psy18018 488 CLQTLSG 494 (635)
Q Consensus 488 ~~~~~~~ 494 (635)
.+..+..
T Consensus 328 ~~~~~~~ 334 (349)
T 1jmx_B 328 KVKNIKL 334 (349)
T ss_dssp EEEEEEC
T ss_pred eeeeeec
Confidence 8888765
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=1.3e-16 Score=152.84 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=157.8
Q ss_pred EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
++++++..+++++.++.|++||..+++.+..+..+. ..+..++++ |++
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s-------------------------------~dg 54 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-------------------------------PDN 54 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC-------------------------------TTS
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC-------------------------------CCC
Confidence 466788889999999999999999998877776543 134444443 455
Q ss_pred cEEE-EEeCCCcEEEEeCCCCceeeeeccCC------ccEEEEEe--cCCEEEEEeCC------------CcEEEEECCC
Q psy18018 427 VHVV-SGSLDTSIRVWEAESGNLRHTLMGHQ------SLTSGMEL--RNNILVSGNAD------------STVKVWDIVS 485 (635)
Q Consensus 427 ~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~------~~v~~~~~--~~~~l~s~~~d------------g~i~iwd~~~ 485 (635)
++++ +...++.|.+||+.+++....+..+. ..+.++.+ +++++++++.+ +.|.+||+.+
T Consensus 55 ~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 55 RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred CEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 4433 33356677777777777666554322 12334444 67788888765 8999999988
Q ss_pred Ccee---EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceec-------------------
Q psy18018 486 GQCL---QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL------------------- 541 (635)
Q Consensus 486 ~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------------- 541 (635)
++.. ..+. +...+.++++ +++ +++++. .|++||+.+++....+......
T Consensus 135 ~~~~~~~~~~~----~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (349)
T 1jmx_B 135 GLEAKPVRTFP----MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207 (349)
T ss_dssp GGGBCCSEEEE----CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred ccccceeeecc----CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcc
Confidence 5433 3333 2234666777 677 555543 4999999998877655432100
Q ss_pred ----Cce----------------------------------eEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCC
Q psy18018 542 ----NPF----------------------------------YFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 542 ----~~~----------------------------------~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~ 582 (635)
.+. ....+...+..++|+| |+++++++ ++.|.+||+.++
T Consensus 208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 000 0001123566788999 99999988 889999999999
Q ss_pred ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 583 EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 583 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+.+..+. ....+.+++|+|||++|++++.++. |++||.+
T Consensus 286 ~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~----v~v~d~~ 324 (349)
T 1jmx_B 286 KLIKAAN------LDHTYYCVAFDKKGDKLYLGGTFND----LAVFNPD 324 (349)
T ss_dssp EEEEEEE------CSSCCCEEEECSSSSCEEEESBSSE----EEEEETT
T ss_pred eEEEEEc------CCCCccceEECCCCCEEEEecCCCe----EEEEecc
Confidence 9887773 2234678999999998888888876 6666664
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=5.6e-16 Score=159.19 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=125.3
Q ss_pred EEEEecCcE-EEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018 347 FGFQFDGVH-VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425 (635)
Q Consensus 347 ~~~s~~~~~-l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 425 (635)
.+++|+++. +++...++.+.+||+.+++.......+. .++ .++||
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~-------------------------------~~spD 160 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGF-------------------------------VSDIR 160 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEE-------------------------------EEEEE
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceE-------------------------------EECCC
Confidence 457887753 3333344455699988776544332211 222 24578
Q ss_pred CcEEEEEeCC----CcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeEEecCCCc
Q psy18018 426 GVHVVSGSLD----TSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADS--TVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 426 ~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~ 497 (635)
|+++++++.+ +.|++||+.+++.. .+..|...+..++| +++.|+++..++ .|++||+.+++.. .+..
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~--- 235 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL--- 235 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---
Confidence 8888877666 67999999887764 66778888887777 567888888888 8999999988876 5554
Q ss_pred ccccEEEEE--------e--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018 498 HQSAVTCLQ--------F--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567 (635)
Q Consensus 498 ~~~~v~~~~--------~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 567 (635)
+...+..++ | ||.++++++.|+.+++|++ ++.... ....+.+++|+ |++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--------------~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--------------PQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--------------CSSEEEEEEEE-TTEEEEE
T ss_pred CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--------------CCCceEEEEec-CCEEEEE
Confidence 444443333 5 7889999999999999999 543321 13467789999 9999999
Q ss_pred ecCCC---eEEEEeCCC
Q psy18018 568 SSDDG---TVKLWDVKT 581 (635)
Q Consensus 568 ~~~d~---~v~iwd~~~ 581 (635)
++.+. .+.+||..+
T Consensus 299 ~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 299 HTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEETTEEEEEEEETTCC
T ss_pred EcCCCCCCeEEEEcCCC
Confidence 88774 477777654
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=1e-16 Score=169.30 Aligned_cols=340 Identities=10% Similarity=0.034 Sum_probs=201.9
Q ss_pred eccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCC---CeEEEEe--eCCEEEEeeC---------ceeEEEeccccee
Q psy18018 189 GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTG---GVWSSQM--AGNIIISGST---------DRTLKGWSNAERI 254 (635)
Q Consensus 189 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~--~~~~l~s~~~---------dg~i~~w~~~~~~ 254 (635)
.+.++..++..+.|+.|++||+.+++....+.+|.. .+.+++| +|++|++++. ++.|++||+.++.
T Consensus 22 ~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~ 101 (719)
T 1z68_A 22 NWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE 101 (719)
T ss_dssp EESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred EECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence 344444667677899999999999998777765543 3778888 5888988876 7999999987653
Q ss_pred eeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhh
Q psy18018 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAAT 334 (635)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (635)
.....
T Consensus 102 ~~~~~--------------------------------------------------------------------------- 106 (719)
T 1z68_A 102 FVRGN--------------------------------------------------------------------------- 106 (719)
T ss_dssp ECCSS---------------------------------------------------------------------------
T ss_pred cccce---------------------------------------------------------------------------
Confidence 21000
Q ss_pred hccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEee-eCCCcce-----------------eEEEEe--CC
Q psy18018 335 LHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLT-----------------SGMELR--NN 394 (635)
Q Consensus 335 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~-~~~~~~v-----------------~~l~~~--~~ 394 (635)
.........+|||||+.|+.+. ++.|++|++.+++..... .++...+ .+++|+ ++
T Consensus 107 ----~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~ 181 (719)
T 1z68_A 107 ----ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK 181 (719)
T ss_dssp ----CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS
T ss_pred ----ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC
Confidence 0001233467999999999886 679999999888765432 2222212 467786 56
Q ss_pred EEEEEeCC-CcEEEEEccC---CcceeEEEEE-eeCCcEEEEEeCCCcEEEEeCCCCcee--------eeeccCCccEEE
Q psy18018 395 ILVSGNAD-STVKVWDIVS---GTKKLMFRIC-LFDGVHVVSGSLDTSIRVWEAESGNLR--------HTLMGHQSLTSG 461 (635)
Q Consensus 395 ~l~s~~~d-g~i~iwd~~~---~~~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~--------~~~~~~~~~v~~ 461 (635)
.|++++.| +.+.+|.+.. .......... ...|. ......|++||+.+++.. ..+.+|...+..
T Consensus 182 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 182 FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA----KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS----CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC----CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 77777654 4444443321 1111111111 11111 012337899999987653 223467778888
Q ss_pred EEec--CCEEEEEeCC----CcEEEEE----CCCCceeEEe----cCCCcccccEE-----EEEe--cCCEEEE--EeCC
Q psy18018 462 MELR--NNILVSGNAD----STVKVWD----IVSGQCLQTL----SGRNKHQSAVT-----CLQF--NSRFVIT--SSDD 518 (635)
Q Consensus 462 ~~~~--~~~l~s~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~~~~v~-----~~~~--~~~~l~~--~~~d 518 (635)
++|+ ++++++.... ..|.+|| ..+++....+ .. +...+. .+.| ||+.++. ...+
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES---RTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC---SSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc---CCceEccccCCccEECCCCCeEEEEEEccC
Confidence 8885 4455554332 2488899 7777655444 22 333333 4455 7775544 4455
Q ss_pred C--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC-----CCeEEEEeCCC--Cc-eEEee
Q psy18018 519 G--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD-----DGTVKLWDVKT--GE-FIRNL 588 (635)
Q Consensus 519 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----d~~v~iwd~~~--~~-~~~~~ 588 (635)
| .|.+||+.+++. ..+.. +...+..+.++ +++.|+..+. ++..++|.+.. +. ....+
T Consensus 335 g~~~l~~~~~~~~~~-~~lt~-----------~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 335 GYKHIHYIKDTVENA-IQITS-----------GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp SCEEEEEESSCSTTC-EECSC-----------SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred CceEEEEEECCCCce-Eeccc-----------CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence 5 577777776652 22221 23345566666 7766665554 48889998764 42 12333
Q ss_pred eeccCCCCCceEEEEEeCCCCeEEEE-ccCCCeeEeEEEEEeee
Q psy18018 589 VSLDSGGSGGVVWRIRASETKLVCAV-GSRNGTEETKLLVLDFD 631 (635)
Q Consensus 589 ~~~~~~~~~~~i~~l~~s~d~~~l~~-~~~dg~~~~~l~~~d~~ 631 (635)
.. ...++...+..+.|+||+++|+. ++..... .++.+|.+
T Consensus 402 ~~-~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p--~~~l~d~~ 442 (719)
T 1z68_A 402 TC-HLRKERCQYYTASFSDYAKYYALVCYGPGIP--ISTLHDGR 442 (719)
T ss_dssp ST-TTTTTTBCBEEEEECGGGSSEEEEECCBSSC--EEEEECSS
T ss_pred cC-ccCCCCCceEEEEECCCCCEEEEEcCCCCCC--eEEEEECC
Confidence 11 00125567889999999997774 4444433 24555553
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.73 E-value=2.9e-15 Score=143.03 Aligned_cols=234 Identities=13% Similarity=0.194 Sum_probs=151.1
Q ss_pred CceEEEEecCcEEEEecC---CCeEEEEEccCCc--eEEeeeCCCcceeEEEEe--CCEEEEEe-CCCcEEEEEccCC-c
Q psy18018 344 PDLFGFQFDGVHVVSGSL---DTSIRVWEAESGN--LRHTLMGHQSLTSGMELR--NNILVSGN-ADSTVKVWDIVSG-T 414 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~---dg~i~v~~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~-~ 414 (635)
+..++++|+|+ +++++. ++.|.+|++.+++ .+..+..+...+..++++ +++|++++ .++.+.+|++... .
T Consensus 42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA 120 (347)
T ss_dssp CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC
T ss_pred cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC
Confidence 34567899998 555543 6899999997665 344445567778888887 56777777 7789999998632 2
Q ss_pred ce--------------------eEEEEEeeCCcEEEEEeCCCcEEEEeCC-CCceee--eeccCC-ccEEEEEe--cCCE
Q psy18018 415 KK--------------------LMFRICLFDGVHVVSGSLDTSIRVWEAE-SGNLRH--TLMGHQ-SLTSGMEL--RNNI 468 (635)
Q Consensus 415 ~~--------------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~-~~v~~~~~--~~~~ 468 (635)
.. .....++|+|+.+++...++.|.+|++. ++++.. .+..+. .....+.+ ++++
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 11 1124578899966666678899999998 554432 222222 24555665 5665
Q ss_pred EE-EEeCCCcEEEEECCC--Cce--eEEecCCCc---ccccEEEEEe--cCCEE-EEEeCCCcEEEEECCCCceeeeecc
Q psy18018 469 LV-SGNADSTVKVWDIVS--GQC--LQTLSGRNK---HQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 469 l~-s~~~dg~i~iwd~~~--~~~--~~~~~~~~~---~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~ 537 (635)
++ +...++.+.+|++.. ++. +..+..... ....+..++| ||++| ++...++.|.+|++........+..
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 54 456788999999874 442 222222110 1134677777 68877 5556689999999974321111110
Q ss_pred ceecCceeEEeccCceecccccCCCeEEEEecC-CCeEEEE--eCCCCceEE
Q psy18018 538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD-DGTVKLW--DVKTGEFIR 586 (635)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iw--d~~~~~~~~ 586 (635)
...+...+..++|+|||++|++++. ++.|.+| |.++|+...
T Consensus 281 --------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 281 --------ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp --------EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred --------EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 1113445788999999998888775 4899999 656777543
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=1.5e-15 Score=147.65 Aligned_cols=273 Identities=11% Similarity=0.043 Sum_probs=177.6
Q ss_pred EEEEecCcEEEEecC-CC--eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE-
Q psy18018 347 FGFQFDGVHVVSGSL-DT--SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR- 420 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~-dg--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 420 (635)
.+|+|||++|+.++. ++ .|.+||+.+++......++...+....|+ ++.|+.++.++.+.+||+.+++......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 359999999988887 66 48888999888877777776666556676 6789999999999999999887553322
Q ss_pred ----------EEeeCCcEEEEE----------------------eCCCcEEEEeCCCCceeeeeccCCccEEEEEec---
Q psy18018 421 ----------ICLFDGVHVVSG----------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--- 465 (635)
Q Consensus 421 ----------~~~~~~~~l~~~----------------------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--- 465 (635)
..++++..++.. ..+..|.+||+.+++... +..+...+..+.++
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCC
Confidence 246788887743 244689999999886544 44455566666654
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceeEEecCCCccc--ccEEEEEe--cCCEEEEEeC-CC----cEEEEECCCCc
Q psy18018 466 NNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQ--SAVTCLQF--NSRFVITSSD-DG----TVKLWDVKTGE 530 (635)
Q Consensus 466 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~-d~----~i~vwd~~~~~ 530 (635)
++.++....+ ..|.++|...++. ..+.. +. ..+...+| ||+.|+..+. ++ .|++||+.+++
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee---CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 4567666653 3788888775543 33332 22 34666667 6887755443 22 39999999987
Q ss_pred eeeeeccceecCceeEEeccCceecccccCCCeEEEEe---------cCCCeEEEEeCCCCceEEeeeeccCC------C
Q psy18018 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS---------SDDGTVKLWDVKTGEFIRNLVSLDSG------G 595 (635)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---------~~d~~v~iwd~~~~~~~~~~~~~~~~------~ 595 (635)
......... .. .........+|+|||+.|+.. ..+..|++||+.+++.. .+...... .
T Consensus 276 ~~~l~~~~~----~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 276 NRQLTSMPA----CS--HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGD 348 (388)
T ss_dssp EEEEEEECC----EE--EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTB
T ss_pred eEEEEcCCC----ce--eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccc
Confidence 432211110 00 000112335799999988854 45678999999987753 34221000 0
Q ss_pred CCceEEEEEeCCCCeEEEEcc-CCCeeEeEEEEEeeecC
Q psy18018 596 SGGVVWRIRASETKLVCAVGS-RNGTEETKLLVLDFDVD 633 (635)
Q Consensus 596 ~~~~i~~l~~s~d~~~l~~~~-~dg~~~~~l~~~d~~~~ 633 (635)
....+.+++|+|||+.|+..+ .+|. ..||.+|+...
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~~~g~--~~l~~~~l~~~ 385 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSDVHGK--PALYLATLPES 385 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSS--CEEEEEECCGG
T ss_pred cccCCCCccCCCCCCEEEEEecCCCc--eeEEEEECChh
Confidence 001467889999999877665 4565 67899887653
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=3.3e-16 Score=165.44 Aligned_cols=268 Identities=10% Similarity=0.070 Sum_probs=180.0
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCc---ceeEEEEe--CCEEEEEeC---------CCcEEEEEcc
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS---LTSGMELR--NNILVSGNA---------DSTVKVWDIV 411 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~---~v~~l~~~--~~~l~s~~~---------dg~i~iwd~~ 411 (635)
..+|+|++++++++ .++.|++||..+++....+..|.. .+.+++|+ ++.|+.++. ++.+++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 46799999655554 689999999999988777766544 38889997 668888766 7899999998
Q ss_pred CCcc---e-----eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeee-ccCCccE-----------------EEEEe-
Q psy18018 412 SGTK---K-----LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTL-MGHQSLT-----------------SGMEL- 464 (635)
Q Consensus 412 ~~~~---~-----~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v-----------------~~~~~- 464 (635)
+++. . .....++|||+.|+.+. ++.|++|++.+++..+.. .++...+ .++.|
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 8765 2 22346899999999985 789999999888765432 2332211 24444
Q ss_pred -cCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EEecC---CCcccccEEE
Q psy18018 465 -RNNILVSGNADS----------------------------------TVKVWDIVSGQCL--QTLSG---RNKHQSAVTC 504 (635)
Q Consensus 465 -~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~--~~~~~---~~~~~~~v~~ 504 (635)
+++.|++++.|. .|++||+.+++.. ..+.. ...+...+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 678898887552 7889999887643 12211 0126677888
Q ss_pred EEe--cCCEEEEEeCC----CcEEEEE----CCCCceeeeeccceecCceeEEeccCcee-----cccccCCCeEEEE--
Q psy18018 505 LQF--NSRFVITSSDD----GTVKLWD----VKTGEFSTPLMSSFILNPFYFLIYSQPLL-----CPHLQFNSRFVIT-- 567 (635)
Q Consensus 505 ~~~--~~~~l~~~~~d----~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~-- 567 (635)
++| |++++++.... ..|.+|| +.+++....... ....+...+. .++|+|||+.|+.
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH-------IEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE-------EEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec-------ccccCCceEccccCCccEECCCCCeEEEEE
Confidence 888 66666664433 2488899 777664433210 0012344455 7899999996554
Q ss_pred ecCCC--eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC-----CeeEeEEEEEeee
Q psy18018 568 SSDDG--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN-----GTEETKLLVLDFD 631 (635)
Q Consensus 568 ~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d-----g~~~~~l~~~d~~ 631 (635)
...+| .|.+||+.+++. ..+ ..+...+..+.++ |++.|+..+.+ +. .+||.++.+
T Consensus 331 ~~~~g~~~l~~~~~~~~~~-~~l-----t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~--~~l~~~~~~ 392 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVENA-IQI-----TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR--RNIYRISIG 392 (719)
T ss_dssp ECTTSCEEEEEESSCSTTC-EEC-----SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC--BEEEEEECS
T ss_pred EccCCceEEEEEECCCCce-Eec-----ccCceEEEEEEEE-eCCEEEEEEecCCCCCce--EEEEEEeCC
Confidence 44555 577888887773 344 2344557777777 77766655544 54 678888873
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.9e-14 Score=137.17 Aligned_cols=281 Identities=11% Similarity=0.067 Sum_probs=188.2
Q ss_pred cCCEEEEEe------CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeC----------CCcEEEEECCCCe
Q psy18018 151 DGKLVVSGA------YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSD----------DNTLKVWSATTGK 214 (635)
Q Consensus 151 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~ 214 (635)
++++++... .|+.|.+||..+++.+..+...... .....+++.+++++.. ++.|.+||..+++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 555555543 4789999999999887776655544 5556667778888763 5678888888777
Q ss_pred EEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceee
Q psy18018 215 CLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELAL 294 (635)
Q Consensus 215 ~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (635)
.+.++......
T Consensus 93 ~~~~i~~~~~~--------------------------------------------------------------------- 103 (361)
T 2oiz_A 93 FEKEISLPPKR--------------------------------------------------------------------- 103 (361)
T ss_dssp EEEEEEECTTB---------------------------------------------------------------------
T ss_pred EEEEEEcCccc---------------------------------------------------------------------
Confidence 77665421100
Q ss_pred EEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC--CCeEEEEEccC
Q psy18018 295 YVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL--DTSIRVWEAES 372 (635)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~v~~~~~ 372 (635)
......+..++++|+|++|+++.. ++.|.+||+.+
T Consensus 104 -------------------------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 104 -------------------------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp -------------------------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred -------------------------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence 001122334669999999998864 57899999999
Q ss_pred CceEEe-eeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccC-CcceeEEE--------------EEeeCCcEEEEEe
Q psy18018 373 GNLRHT-LMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVS-GTKKLMFR--------------ICLFDGVHVVSGS 433 (635)
Q Consensus 373 ~~~~~~-~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--------------~~~~~~~~l~~~~ 433 (635)
++.+.. +..... ..+.+. +..+++.+.||.+..|+... ++...... ..++++..++..+
T Consensus 141 ~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (361)
T 2oiz_A 141 GDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS 218 (361)
T ss_dssp TEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred CcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence 988776 543221 112222 35778888999999998865 33221111 1346677778888
Q ss_pred CCCcEEEEeCCCCce--eeeecc------------CCccEEEEEecCCEEEEEeC-----------CCcEEEEECCCCce
Q psy18018 434 LDTSIRVWEAESGNL--RHTLMG------------HQSLTSGMELRNNILVSGNA-----------DSTVKVWDIVSGQC 488 (635)
Q Consensus 434 ~d~~i~~~d~~~~~~--~~~~~~------------~~~~v~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~ 488 (635)
.++.+.++|+..... ...+.. ......++..+++.++++.. .+.|.+||+.+++.
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~ 298 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR 298 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence 899999999875532 122110 11112355566676665543 34799999999999
Q ss_pred eEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC--ceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 489 LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG--EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 489 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
+..+.. +. +.++++ ++++|++++. +.|.+||..++ +.+..+.. .......++++|||+
T Consensus 299 v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~-----------~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 299 VARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG-----------AAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT-----------SCSSEEEEEECCCSC
T ss_pred EEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc-----------CCCCcEEEEecCCCC
Confidence 999886 33 666777 7899998887 99999999999 87766532 244556788899885
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=9.4e-15 Score=140.22 Aligned_cols=268 Identities=11% Similarity=0.070 Sum_probs=164.8
Q ss_pred EEEEecCC--CeEEEEEc--cCCceEE--eee-CCCcceeEEEEe--CCEEEEEeCCCcEEEEEcc-CCcceeEEE----
Q psy18018 355 HVVSGSLD--TSIRVWEA--ESGNLRH--TLM-GHQSLTSGMELR--NNILVSGNADSTVKVWDIV-SGTKKLMFR---- 420 (635)
Q Consensus 355 ~l~~~~~d--g~i~v~~~--~~~~~~~--~~~-~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~-~~~~~~~~~---- 420 (635)
.+++|+.. +.|.+|++ .+++... ... .....+..++++ +++|++++.+ .+.+|++. +++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555543 56888765 4554422 121 233467788887 6688888887 99999997 665433222
Q ss_pred ------EEeeCCcE--EEEEe-------------CCCcEEEEeCC-CCceeeeec----cCCccEEEEEe--cCCEEEEE
Q psy18018 421 ------ICLFDGVH--VVSGS-------------LDTSIRVWEAE-SGNLRHTLM----GHQSLTSGMEL--RNNILVSG 472 (635)
Q Consensus 421 ------~~~~~~~~--l~~~~-------------~d~~i~~~d~~-~~~~~~~~~----~~~~~v~~~~~--~~~~l~s~ 472 (635)
.++|+|++ ++++. .++.+.+|++. +++....+. .+...+.++.+ ++++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 14678884 44543 68999999997 466554443 24456777776 46677766
Q ss_pred e-CCCcEEEEECC-CCcee--EEecCCCcccccEEEEEe--cCCEEEEEeC-CCcEEEEECC--CCceeeeeccceecCc
Q psy18018 473 N-ADSTVKVWDIV-SGQCL--QTLSGRNKHQSAVTCLQF--NSRFVITSSD-DGTVKLWDVK--TGEFSTPLMSSFILNP 543 (635)
Q Consensus 473 ~-~dg~i~iwd~~-~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~ 543 (635)
+ .++.|++||+. +++.. ..+... .+...+..++| +|+++++++. ++.|.+|++. +++....... ....+
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~ 240 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS-FPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-EESSC
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce-EEcCC
Confidence 5 46899999998 66643 223210 12345777777 6888887775 6899999875 4553211000 00000
Q ss_pred eeEEeccC------ceeccc-ccCCCeEEEEecCCC------eEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeCC--
Q psy18018 544 FYFLIYSQ------PLLCPH-LQFNSRFVITSSDDG------TVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRASE-- 607 (635)
Q Consensus 544 ~~~~~~~~------~v~~~~-~s~~~~~l~~~~~d~------~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~-- 607 (635)
.....+.. .+..++ |+|||++|++++.+. .|.+|++. +++........ ..+...+..++|+|
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~ 318 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCP 318 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECT
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCC
Confidence 00001121 477899 999999888765432 89999996 66654321101 12333456789999
Q ss_pred -CCeEEEEccCC-CeeEeEEEEEe
Q psy18018 608 -TKLVCAVGSRN-GTEETKLLVLD 629 (635)
Q Consensus 608 -d~~~l~~~~~d-g~~~~~l~~~d 629 (635)
||++|++++.+ +. +++|.+|
T Consensus 319 ~dg~~l~v~~~~~~~--v~v~~~~ 340 (365)
T 1jof_A 319 WSDEWMAITDDQEGW--LEIYRWK 340 (365)
T ss_dssp TCTTEEEEECSSSCE--EEEEEEE
T ss_pred cCCCEEEEEEcCCCe--EEEEEEc
Confidence 89999998875 55 5566554
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=1.3e-14 Score=152.98 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=86.7
Q ss_pred EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceE----EEEEEc--CCEEEEeeCCCcE
Q psy18018 30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVI----TCLQFS--GSRIVSGSDDNTL 103 (635)
Q Consensus 30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi----~~~~~s--~~~l~s~~~d~~v 103 (635)
..++|+ |||++++++ ++ .+.+||..+++....+.+|..... ..++|| |++|+.++.++.+
T Consensus 20 ~~~~w~----~dg~~~~~~--~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 20 YSLRWI----SDHEYLYKQ--EN--------NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ 85 (740)
T ss_dssp CCEEEC----SSSEEEEEE--TT--------EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred cccEEC----CCCcEEEEc--CC--------cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee
Confidence 578999 999999986 32 344699999998888888875431 236778 9999998876432
Q ss_pred EEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccce
Q psy18018 104 KVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECL 175 (635)
Q Consensus 104 ~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~ 175 (635)
|.. +..+.+.+||+++++.. .+..|.+.+...+| ||+.||.+. |+.|.+|++.+++..
T Consensus 86 --~r~----------~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 86 --WRH----------SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp --SSS----------CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred --EEE----------ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 211 11244666777776644 46678888999999 999999884 789999999887644
No 166
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=6.7e-13 Score=132.75 Aligned_cols=316 Identities=10% Similarity=0.029 Sum_probs=210.8
Q ss_pred cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECC--CCeEEEEEeCCCCCeEE
Q psy18018 151 DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSAT--TGKCLRTLIGHTGGVWS 228 (635)
Q Consensus 151 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~ 228 (635)
.+..+++...+++|.++|..+++.+..+............+++.++++++.++.|.+||+. +++.+.++.....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---- 241 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---- 241 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE----
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC----
Confidence 4456777788999999999999988877766555566667778899999999999999985 6666655542111
Q ss_pred EEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhh
Q psy18018 229 SQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRA 308 (635)
Q Consensus 229 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (635)
T Consensus 242 -------------------------------------------------------------------------------- 241 (567)
T 1qks_A 242 -------------------------------------------------------------------------------- 241 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEE----ecCcEEEEecC-CCeEEEEEccCCceEEeeeCC-
Q psy18018 309 AQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQ----FDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH- 382 (635)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~- 382 (635)
+..++++ |||+++++++. ++.|.++|..+.+.+..+...
T Consensus 242 -----------------------------------P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~ 286 (567)
T 1qks_A 242 -----------------------------------ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 286 (567)
T ss_dssp -----------------------------------EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred -----------------------------------CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence 1123477 58887776655 488889998888877765432
Q ss_pred ----------CcceeEEEEe---CCEEEEEeCCCcEEEEEccCCcceeE----------EEEEeeCCcEEEEEe-CCCcE
Q psy18018 383 ----------QSLTSGMELR---NNILVSGNADSTVKVWDIVSGTKKLM----------FRICLFDGVHVVSGS-LDTSI 438 (635)
Q Consensus 383 ----------~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~l~~~~-~d~~i 438 (635)
...+..+..+ +.+++....+|.|.++|....+.... -..+++++++++++. .++.|
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 366 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeE
Confidence 1145666655 34666667779999999876532222 124788999987765 57899
Q ss_pred EEEeCCCCceeeeecc-----CCccEEEE-EecCC-EEEEEe-CCCcEEEEECCC-------CceeEEecCCCcccccEE
Q psy18018 439 RVWEAESGNLRHTLMG-----HQSLTSGM-ELRNN-ILVSGN-ADSTVKVWDIVS-------GQCLQTLSGRNKHQSAVT 503 (635)
Q Consensus 439 ~~~d~~~~~~~~~~~~-----~~~~v~~~-~~~~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~v~ 503 (635)
.++|+.++++...+.. |.+.-..+ .+++. ..++.. .++.|.++|..+ .+.++.+.........|
T Consensus 367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i- 445 (567)
T 1qks_A 367 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI- 445 (567)
T ss_dssp EEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE-
T ss_pred EEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE-
Confidence 9999999988776654 43322223 33333 444443 568999999987 56777776521111112
Q ss_pred EEEecCCEEEEEeC-------CCcEEEEECCCCce-----e-eeeccceecCceeEEeccCceecccccCCCeEEEEec-
Q psy18018 504 CLQFNSRFVITSSD-------DGTVKLWDVKTGEF-----S-TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS- 569 (635)
Q Consensus 504 ~~~~~~~~l~~~~~-------d~~i~vwd~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 569 (635)
....+++++.+... .+.|.++|+.+.+. . ..+....... + ..-...+..+.|+|+|+++..+.
T Consensus 446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~G~~~~~s~~ 522 (567)
T 1qks_A 446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG-I--TEGQPRVVQGEFNKDGTEVWFSVW 522 (567)
T ss_dssp ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT-C--CSSCCEEEEEEECTTSSEEEEEEE
T ss_pred EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc-c--CCCCcceEeeeECCCCCEEEEEee
Confidence 23447888887663 35899999987621 1 1111000000 0 00134678899999999877763
Q ss_pred ----CCCeEEEEeCCCCceEEeee
Q psy18018 570 ----DDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 570 ----~d~~v~iwd~~~~~~~~~~~ 589 (635)
.++.|.|+|.++++++..+.
T Consensus 523 ~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 523 NGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCCCCcEEEEECCCceEEEEeC
Confidence 37999999999999988884
No 167
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.66 E-value=2.4e-13 Score=131.15 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=204.4
Q ss_pred ecCCEEEEEeCCCeEEEEeCCCccceeeccccc---------eeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy18018 150 YDGKLVVSGAYDYMVKIWNPDTEECLHAELQET---------EVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLI 220 (635)
Q Consensus 150 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 220 (635)
.++..++.++.++.|..+|..+++.+....... ..........++.+++++.++.|..+|..+|+.+....
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 367888888889999999999998877655421 11222223457889999999999999999999988776
Q ss_pred CCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeec
Q psy18018 221 GHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFL 300 (635)
Q Consensus 221 ~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (635)
............+..++.++.++.+..+|..++.........
T Consensus 131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~-------------------------------------- 172 (376)
T 3q7m_A 131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLD-------------------------------------- 172 (376)
T ss_dssp CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC--------------------------------------
T ss_pred CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--------------------------------------
Confidence 544333333446788899999999999998765432211000
Q ss_pred CchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee
Q psy18018 301 QPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~ 380 (635)
... ........ ....+..+++++.++.+..+|..+++.+....
T Consensus 173 --------------------~~~-------------~~~~~~~~----~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 173 --------------------MPS-------------LSLRGESA----PTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp --------------------C------------------CCCCC----CEEETTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred --------------------CCc-------------eeecCCCC----cEEECCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 000 00000000 01124567888889999999999999887765
Q ss_pred CCCc-----------ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEE-----EEeeCCcEEEEEeCCCcEEEEeCC
Q psy18018 381 GHQS-----------LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFR-----ICLFDGVHVVSGSLDTSIRVWEAE 444 (635)
Q Consensus 381 ~~~~-----------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~l~~~~~d~~i~~~d~~ 444 (635)
.... ........++.++.++.++.+..+|..+++...... ....++..++.++.++.+..+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 216 ISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp CCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETT
T ss_pred cccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECC
Confidence 3321 011223347788888899999999998887654332 233457788888999999999999
Q ss_pred CCceeeeecc-CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE-EEEEecCCEEEEEeCCCcEE
Q psy18018 445 SGNLRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV-TCLQFNSRFVITSSDDGTVK 522 (635)
Q Consensus 445 ~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d~~i~ 522 (635)
+++....... ...........++.++.++.+|.+..+|..+++.+...... ...+ ......+..|+.++.+|.|+
T Consensus 296 tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~---~~~~~~~~~~~~~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 296 GGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVD---SSGFQTEPVAADGKLLIQAKDGTVY 372 (376)
T ss_dssp TCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC---TTCBCSCCEEETTEEEEEBTTSCEE
T ss_pred CCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecC---CCcceeCCEEECCEEEEEeCCCEEE
Confidence 9998877662 22333344556788999999999999999999988777641 1222 12233567888899999999
Q ss_pred EEE
Q psy18018 523 LWD 525 (635)
Q Consensus 523 vwd 525 (635)
.|+
T Consensus 373 ~~~ 375 (376)
T 3q7m_A 373 SIT 375 (376)
T ss_dssp EEE
T ss_pred EEe
Confidence 987
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.66 E-value=3.9e-13 Score=128.93 Aligned_cols=197 Identities=10% Similarity=0.099 Sum_probs=121.3
Q ss_pred EEEEecCcE--EEEec-------------CCCeEEEEEcc-CCceEEeeeC----CCcceeEEEEeCCEEEEEeCCCcEE
Q psy18018 347 FGFQFDGVH--VVSGS-------------LDTSIRVWEAE-SGNLRHTLMG----HQSLTSGMELRNNILVSGNADSTVK 406 (635)
Q Consensus 347 ~~~s~~~~~--l~~~~-------------~dg~i~v~~~~-~~~~~~~~~~----~~~~v~~l~~~~~~l~s~~~dg~i~ 406 (635)
++++|+|++ ++++. .+|.+.+|++. +++....+.. +...+.+++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------- 151 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV---------------- 151 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE----------------
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE----------------
Confidence 457888884 44553 68899999987 4554333221 222333333
Q ss_pred EEEccCCcceeEEEEEeeCCcEEEEEeC-CCcEEEEeCC-CCcee--eeec--cCCccEEEEEe--cCCEEEEEeC-CCc
Q psy18018 407 VWDIVSGTKKLMFRICLFDGVHVVSGSL-DTSIRVWEAE-SGNLR--HTLM--GHQSLTSGMEL--RNNILVSGNA-DST 477 (635)
Q Consensus 407 iwd~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~--~~~~~v~~~~~--~~~~l~s~~~-dg~ 477 (635)
++|+|++++++.. ++.|++|++. +++.. ..+. .|...+..+.+ +++++++++. ++.
T Consensus 152 ---------------~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~ 216 (365)
T 1jof_A 152 ---------------FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR 216 (365)
T ss_dssp ---------------ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred ---------------ECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe
Confidence 4567776666553 5678888887 56543 2332 23455666666 5667777664 789
Q ss_pred EEEEECC--CCcee---EEecCCC----cccc------cEEEEE-e--cCCEEEEEeCCC------cEEEEECC-CCcee
Q psy18018 478 VKVWDIV--SGQCL---QTLSGRN----KHQS------AVTCLQ-F--NSRFVITSSDDG------TVKLWDVK-TGEFS 532 (635)
Q Consensus 478 i~iwd~~--~~~~~---~~~~~~~----~~~~------~v~~~~-~--~~~~l~~~~~d~------~i~vwd~~-~~~~~ 532 (635)
|.+|++. +++.. ..+.... .+.. .+..++ + ||++|++++.+. .|.+|++. +++..
T Consensus 217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 9999765 45542 1222111 1221 467777 6 788887776432 89999996 55533
Q ss_pred eeeccceecCceeEEeccCceecccccC---CCeEEEEecCC-CeEEEEeCCCC
Q psy18018 533 TPLMSSFILNPFYFLIYSQPLLCPHLQF---NSRFVITSSDD-GTVKLWDVKTG 582 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d-~~v~iwd~~~~ 582 (635)
..... ...+......++|+| ||++|++++.+ +.|.+|++...
T Consensus 297 ~~~~~--------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 297 KQLFL--------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEE--------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred Eeeee--------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 21100 001234567899999 89999998864 89999998765
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=8.1e-14 Score=131.38 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=157.9
Q ss_pred CCCceEEEEecCcEEEEecCCC------------------------eEEEEEccCCceEEeee-CCCcceeEEEEeCCEE
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDT------------------------SIRVWEAESGNLRHTLM-GHQSLTSGMELRNNIL 396 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg------------------------~i~v~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l 396 (635)
..+..++++|+|+.+++...++ .|.+||..+++.+..+. .+-.....++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia------ 97 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS------ 97 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE------
Confidence 4556788999999988887774 45555554444433322 1112233333
Q ss_pred EEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc-eeeee---------ccCCccEEEEEec-
Q psy18018 397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN-LRHTL---------MGHQSLTSGMELR- 465 (635)
Q Consensus 397 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~---------~~~~~~v~~~~~~- 465 (635)
++++|+.+++...++.|+.|+..... .+..+ .++.....+++++
T Consensus 98 -------------------------~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 98 -------------------------IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp -------------------------ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT
T ss_pred -------------------------ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC
Confidence 34556655555566677777764331 33333 2344466777775
Q ss_pred --CCEEEEEe-CCCcEEEEECCCCceeEEecCCC-------cccccEEEEEe--c-CCEEEEEeCCCcEEEEECCCCcee
Q psy18018 466 --NNILVSGN-ADSTVKVWDIVSGQCLQTLSGRN-------KHQSAVTCLQF--N-SRFVITSSDDGTVKLWDVKTGEFS 532 (635)
Q Consensus 466 --~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~v~~~~~--~-~~~l~~~~~d~~i~vwd~~~~~~~ 532 (635)
++++++.+ .++.|++|+ .+++.+..+.... .+......+++ + +.++++...++.|++|+..+++.+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 44666665 689999999 5677777664211 12234677888 4 667777778899999999988877
Q ss_pred eeeccceecCceeEEeccCceecccccC------CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018 533 TPLMSSFILNPFYFLIYSQPLLCPHLQF------NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS 606 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 606 (635)
..+... .+...+..++|+| +++..++...+..|++||+.+++.+..+... .++......|+++
T Consensus 232 ~~~~~~---------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 232 REIKHA---------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--RKHFDMPHDIVAS 300 (329)
T ss_dssp EEECCT---------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS--SSCCSSEEEEEEC
T ss_pred EEEecc---------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC--CCccCCeeEEEEC
Confidence 766432 1344566777888 4443333344568999999999998877321 2455678999999
Q ss_pred CCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 607 ETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 607 ~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
|||.++++...++. |+.|+++.
T Consensus 301 ~dG~lyvad~~~~~----I~~~~~~~ 322 (329)
T 3fvz_A 301 EDGTVYIGDAHTNT----VWKFTLTE 322 (329)
T ss_dssp TTSEEEEEESSSCC----EEEEEEEE
T ss_pred CCCCEEEEECCCCE----EEEEeCCc
Confidence 99988888888887 66666554
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=1e-13 Score=134.63 Aligned_cols=104 Identities=11% Similarity=-0.076 Sum_probs=76.7
Q ss_pred EEEeCCCCeEEEEeeCCCcceEE-----EEe--cCCEEEEEeC-CC--eEEEEeCCCccceeeccccceeE-EeeeccCC
Q psy18018 125 RVWHIESGECLHVLVGHLAAVRC-----VQY--DGKLVVSGAY-DY--MVKIWNPDTEECLHAELQETEVE-LSHGYALR 193 (635)
Q Consensus 125 ~vwd~~~~~~~~~l~~h~~~v~~-----l~~--~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~ 193 (635)
..+|..++..+..+..|...... .+| ||++|+.++. ++ .|.+||+.+++.......+.... .....+++
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34567778888888888876665 667 8999999887 67 48888999888665554443332 23455677
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEE
Q psy18018 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS 228 (635)
Q Consensus 194 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 228 (635)
..|+.+..++.|++||+.+++....+..+...+..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~ 127 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY 127 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccc
Confidence 88999999999999999999887766666554433
No 171
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.66 E-value=7.7e-13 Score=127.60 Aligned_cols=291 Identities=13% Similarity=0.114 Sum_probs=201.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC---------CCe-EEEEeeCCEEEEeeCceeEEEecccceeeeccccc
Q psy18018 192 LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHT---------GGV-WSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLI 261 (635)
Q Consensus 192 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~---------~~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 261 (635)
.++.+++++.++.|..+|..+++.+....... ..+ ..+...+..++.++.++.+..+|..+++.......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 37889999999999999999999987765421 222 44556788999999999999999876543221000
Q ss_pred cccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhcccccc
Q psy18018 262 DSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKT 341 (635)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (635)
.. ..
T Consensus 132 ----------------------------------------------------------~~------------------~~ 135 (376)
T 3q7m_A 132 ----------------------------------------------------------AG------------------EA 135 (376)
T ss_dssp ----------------------------------------------------------SS------------------CC
T ss_pred ----------------------------------------------------------CC------------------ce
Confidence 00 00
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce-----eEEEEeCCEEEEEeCCCcEEEEEccCCcce
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-----SGMELRNNILVSGNADSTVKVWDIVSGTKK 416 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~ 416 (635)
.... . ..+..+++++.++.|..+|..+++.+.......... ......++.++.+..++.+..+|..+++..
T Consensus 136 ~~~p---~-~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 136 LSRP---V-VSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI 211 (376)
T ss_dssp CSCC---E-EETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred EcCC---E-EECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence 0000 1 124577888889999999999999887776543221 233445778888999999999999988766
Q ss_pred eEEEEE------------------eeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcE
Q psy18018 417 LMFRIC------------------LFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTV 478 (635)
Q Consensus 417 ~~~~~~------------------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 478 (635)
...... ...+..++.++.++.+..+|..+++.+..... .....+..+++.+..++.++.+
T Consensus 212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l 289 (376)
T 3q7m_A 212 WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLVDQNDRV 289 (376)
T ss_dssp EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEEETTCCE
T ss_pred EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEEcCCCeE
Confidence 554421 11356788888899999999999998876653 3345666778889999999999
Q ss_pred EEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
..+|..+++.+...... ...........+..++.++.+|.+.++|.++++.+...... ...+.+...
T Consensus 290 ~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-----------~~~~~~~~~ 356 (376)
T 3q7m_A 290 MALTIDGGVTLWTQSDL--LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-----------SSGFQTEPV 356 (376)
T ss_dssp EEEETTTCCEEEEECTT--TTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC-----------TTCBCSCCE
T ss_pred EEEECCCCcEEEeeccc--CCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecC-----------CCcceeCCE
Confidence 99999999988776521 11223333445778889999999999999999877655431 112221111
Q ss_pred cCCCeEEEEecCCCeEEEEe
Q psy18018 559 QFNSRFVITSSDDGTVKLWD 578 (635)
Q Consensus 559 s~~~~~l~~~~~d~~v~iwd 578 (635)
. .+..|+.++.+|.|..||
T Consensus 357 ~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E-ETTEEEEEBTTSCEEEEE
T ss_pred E-ECCEEEEEeCCCEEEEEe
Confidence 1 244566788899999887
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=8.3e-14 Score=135.80 Aligned_cols=324 Identities=9% Similarity=-0.062 Sum_probs=184.0
Q ss_pred EEeCCCCeEEEEeeCCCcc-----eEEEEe--cCCEEEEEeCC---CeEEEEeCCCccceeeccccceeEE-eeeccCCC
Q psy18018 126 VWHIESGECLHVLVGHLAA-----VRCVQY--DGKLVVSGAYD---YMVKIWNPDTEECLHAELQETEVEL-SHGYALRS 194 (635)
Q Consensus 126 vwd~~~~~~~~~l~~h~~~-----v~~l~~--~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (635)
..|..+++.+..+..+... +..++| ||++|+....+ ..|.+||+.+++............. ....+++.
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4467777777777765443 666777 89998877543 4788889988875443333222222 23456678
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEeeCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeee
Q psy18018 195 RIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQ 274 (635)
Q Consensus 195 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (635)
.|+.++.++.|++||+.+++.......+.. ...++..|+....++...+|...
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~~~~~~----------------------- 146 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEE----WKGYGTWVANSDCTKLVGIEILK----------------------- 146 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTT----EEEEEEEEECTTSSEEEEEEEEG-----------------------
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccc----cCCCCCEEEeccCCccccccccc-----------------------
Confidence 898999999999999998887666554443 12234555555544444433210
Q ss_pred eeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCc
Q psy18018 275 LIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGV 354 (635)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 354 (635)
..++|+++
T Consensus 147 ------------------------------------------------------------------------~~~spdg~ 154 (396)
T 3c5m_A 147 ------------------------------------------------------------------------RDWQPLTS 154 (396)
T ss_dssp ------------------------------------------------------------------------GGCCCCCS
T ss_pred ------------------------------------------------------------------------cccCCCCc
Confidence 01456666
Q ss_pred EEEEe-----cCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEE
Q psy18018 355 HVVSG-----SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHV 429 (635)
Q Consensus 355 ~l~~~-----~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l 429 (635)
.++.. ..+..|++||+.+++..... .+...+..+.|++. +++.|
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~------------------------------dg~~l 203 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF------------------------------DDSTV 203 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT------------------------------EEEEE
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC------------------------------CCCEE
Confidence 55543 34668999999887755433 34445555555420 23333
Q ss_pred EEEeCC------CcEEEEeCCCCceeeeeccC-CccEEEEEe--cCCEEEEEeCC-----CcEEEEECCCCceeEEecCC
Q psy18018 430 VSGSLD------TSIRVWEAESGNLRHTLMGH-QSLTSGMEL--RNNILVSGNAD-----STVKVWDIVSGQCLQTLSGR 495 (635)
Q Consensus 430 ~~~~~d------~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~ 495 (635)
+..+.+ ..|.+|++..++........ ...+..+.| +++.|+.++.+ +.|++||+.+++........
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 283 (396)
T 3c5m_A 204 GFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP 283 (396)
T ss_dssp EEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred EEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC
Confidence 332221 35777777655433322211 224555555 56666665443 44999999887654433221
Q ss_pred CcccccEEEEEe-cCCEEEEEe----------------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccc
Q psy18018 496 NKHQSAVTCLQF-NSRFVITSS----------------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHL 558 (635)
Q Consensus 496 ~~~~~~v~~~~~-~~~~l~~~~----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 558 (635)
... ..... +++++++++ .+..|++||+.+++... +......-......-...+..++|
T Consensus 284 -~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~ 358 (396)
T 3c5m_A 284 -PCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSF 358 (396)
T ss_dssp -SEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEE
T ss_pred -CCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceE
Confidence 111 34445 788888754 34789999998876422 211100000000000012566889
Q ss_pred cCCCeEEEEecC-CCe--EEEEeCCCCce
Q psy18018 559 QFNSRFVITSSD-DGT--VKLWDVKTGEF 584 (635)
Q Consensus 559 s~~~~~l~~~~~-d~~--v~iwd~~~~~~ 584 (635)
+|||+.|+.++. ++. |.++|+.+++.
T Consensus 359 s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 359 TPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 999998877664 454 44445555543
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=6e-14 Score=136.82 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=169.6
Q ss_pred eEEEEecCcEEEEecCC---CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEE
Q psy18018 346 LFGFQFDGVHVVSGSLD---TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~d---g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 420 (635)
..+|+|||++|+..... ..|.+|++.+++.......+........|+ ++.|+.++.++.+.+|++.+++......
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence 35699999998776443 478888998877654443333323335565 6789899999999999998876544433
Q ss_pred E---EeeCCcEEEEE------------------------------eCCCcEEEEeCCCCceeeeeccCCccEEEEEecC-
Q psy18018 421 I---CLFDGVHVVSG------------------------------SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN- 466 (635)
Q Consensus 421 ~---~~~~~~~l~~~------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~- 466 (635)
. ++++++.|+.. ..+..|.+||+.+++..... .+...+..+.+++
T Consensus 120 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~ 198 (396)
T 3c5m_A 120 VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF 198 (396)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT
T ss_pred cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC
Confidence 1 33444444331 34568999999988765544 4556677776644
Q ss_pred --CEEEEEeCC------CcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCC-----CcEEEEECCCCce
Q psy18018 467 --NILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDD-----GTVKLWDVKTGEF 531 (635)
Q Consensus 467 --~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-----~~i~vwd~~~~~~ 531 (635)
+.++..+.+ ..|.+||+..++. ..+... .....+..++| ++++|+.++.+ +.|++||+.+++.
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 199 DDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC-CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc-CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 456555443 4688899876543 333221 01234666777 68877776544 4499999998764
Q ss_pred eeeeccceecCceeEEeccCceecccccC-CCeEEEEec----------------CCCeEEEEeCCCCceEEeeeeccCC
Q psy18018 532 STPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSS----------------DDGTVKLWDVKTGEFIRNLVSLDSG 594 (635)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~d~~v~iwd~~~~~~~~~~~~~~~~ 594 (635)
...... . ... +.|+| ||+++++++ .+..|++||+.+++.. .+..
T Consensus 277 ~~l~~~------------~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~---- 337 (396)
T 3c5m_A 277 EEVMVM------------P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCK---- 337 (396)
T ss_dssp EEEEEC------------C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEE----
T ss_pred EEeeeC------------C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccC----
Confidence 332111 1 122 78999 999888754 3478999999888753 3321
Q ss_pred CCCc-----------eEEEEEeCCCCeEEEEccC-CCeeEeEEEEEeeecC
Q psy18018 595 GSGG-----------VVWRIRASETKLVCAVGSR-NGTEETKLLVLDFDVD 633 (635)
Q Consensus 595 ~~~~-----------~i~~l~~s~d~~~l~~~~~-dg~~~~~l~~~d~~~~ 633 (635)
+.. .+..++|+|||+.|+.++. ++. ..||.+|++..
T Consensus 338 -~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~--~~l~~~~~~~~ 385 (396)
T 3c5m_A 338 -HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGV--PAIYIADVPES 385 (396)
T ss_dssp -CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS--CEEEEEECCTT
T ss_pred -CCCccccccccccCCCCCceEccCCCeEEEEecCCCC--ceEEEEEEccc
Confidence 111 2556789999998877665 454 57888887654
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.62 E-value=2.1e-13 Score=128.23 Aligned_cols=248 Identities=9% Similarity=0.012 Sum_probs=170.0
Q ss_pred cCCCeEEEEEccCCceEEeee------CCCcceeEEEEeCCEEE-EEeCCCcEEEEEccCCcceeEEE--------EEee
Q psy18018 360 SLDTSIRVWEAESGNLRHTLM------GHQSLTSGMELRNNILV-SGNADSTVKVWDIVSGTKKLMFR--------ICLF 424 (635)
Q Consensus 360 ~~dg~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~--------~~~~ 424 (635)
+.++.|.++|..+++....+. ........+.++++.+. +...++.|.+||..+++....+. .+++
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 347899999999988765442 11234567777766544 44557899999999887755443 3557
Q ss_pred CCcEEEEEe-CCCcEEEEeCCCCceeeeeccCC-----ccEEEEEecCCEEEEEe--CCCcEEEEECCCCceeEEecCCC
Q psy18018 425 DGVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQ-----SLTSGMELRNNILVSGN--ADSTVKVWDIVSGQCLQTLSGRN 496 (635)
Q Consensus 425 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~ 496 (635)
+++ +.++. .++.|.+||..+++....+.... .....+.++++.+.+++ .++.|.++|+.+++....+...
T Consensus 94 ~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 94 DEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp TTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 874 55554 89999999999998877766433 13345555777666665 4889999999999888877641
Q ss_pred cccccEEEEEe--cCCEEEEEeCC----------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018 497 KHQSAVTCLQF--NSRFVITSSDD----------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564 (635)
Q Consensus 497 ~~~~~v~~~~~--~~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 564 (635)
.....+.+ ++++++++..+ +.|.++|..+++....+... .......++|+||+++
T Consensus 172 ---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~----------~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 172 ---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK----------LGDWPSEVQLNGTRDT 238 (328)
T ss_dssp ---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC----------TTCCCEEEEECTTSCE
T ss_pred ---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC----------CCCCceeEEEecCCCE
Confidence 12234555 57766666554 78999999988866554321 1235788999999998
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEc----cCCCeeEeEEEEEeee
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVG----SRNGTEETKLLVLDFD 631 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~----~~dg~~~~~l~~~d~~ 631 (635)
|.++.. .|.+||+.+++..... .. .........++++| ++.+.++. ..++. |++||.+
T Consensus 239 lyv~~~--~v~~~d~~t~~~~~~~-~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~----V~v~d~~ 301 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVPVRP-FL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI----VYRYSPQ 301 (328)
T ss_dssp EEEESS--SEEEEETTCSSCCSSC-SB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEE----EEEECTT
T ss_pred EEEEcc--EEEEEECCCCceeeee-ee--cCCCCceEEEEEcCCCCeEEEEcccccccCCE----EEEECCC
Confidence 888765 8999999988864211 11 11246788999999 55555555 45555 7777654
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.61 E-value=1.4e-13 Score=145.19 Aligned_cols=271 Identities=9% Similarity=0.043 Sum_probs=173.6
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcc-----eeEEEEe--CCEEEEEeCC---------CcEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSL-----TSGMELR--NNILVSGNAD---------STVKV 407 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~l~s~~~d---------g~i~i 407 (635)
...+.|+||+++++++ ++.|++||+.+++....+.+|... ...++++ ++.++.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 3457899999988886 899999999999988878777643 2235665 6788888775 56679
Q ss_pred EEccCCcce--------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-eccCCccE-------------------
Q psy18018 408 WDIVSGTKK--------LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLT------------------- 459 (635)
Q Consensus 408 wd~~~~~~~--------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v------------------- 459 (635)
||+.+++.. .....++|||+.|+.+ .++.|++|++.+++..+. ..++...+
T Consensus 97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp EETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred EECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 999887532 3455689999999988 468999999988775442 22333222
Q ss_pred EEEEecCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEecCCC--
Q psy18018 460 SGMELRNNILVSGNADS------------------------------------TVKVWDIVS---GQ--CLQTLSGRN-- 496 (635)
Q Consensus 460 ~~~~~~~~~l~s~~~dg------------------------------------~i~iwd~~~---~~--~~~~~~~~~-- 496 (635)
...+++++.|+.++.|. +|++||+.+ ++ ....+....
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 23455778888765321 478899888 63 222333211
Q ss_pred -cccccEEEEEe--cCCEEEEEeC----CCcEEEEECCCCc----eeeeeccceecCceeEEeccCce-----ecccccC
Q psy18018 497 -KHQSAVTCLQF--NSRFVITSSD----DGTVKLWDVKTGE----FSTPLMSSFILNPFYFLIYSQPL-----LCPHLQF 560 (635)
Q Consensus 497 -~~~~~v~~~~~--~~~~l~~~~~----d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~s~ 560 (635)
.+...+..++| ||+.++.... +..|++||+.+++ +..... .....+...+ ...+|+|
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~-------l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ-------HIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC-------EEEECSSSCSSSSSCCCCEECT
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE-------eeeccCCceEccCcCCCceEcC
Confidence 15566788888 7886665533 3379999999887 211110 0011123333 3688999
Q ss_pred CCeEEE-EecC-C--CeEEEEeCCCCceEEeeeeccCCCCCceEEEEE-eCCCCeEEEEccC--CCeeEeEEEEEeee
Q psy18018 561 NSRFVI-TSSD-D--GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR-ASETKLVCAVGSR--NGTEETKLLVLDFD 631 (635)
Q Consensus 561 ~~~~l~-~~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~-~s~d~~~l~~~~~--dg~~~~~l~~~d~~ 631 (635)
||+.|+ ..+. + ..|++||+.+++.. .+. .+ ...+..+. ++ ++.+++++.. ++.....||.++++
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT----~g-~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~ 399 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCT-FIT----KG-TWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLI 399 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCE-ESC----CS-SSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceE-ecc----cC-CEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECC
Confidence 999877 5553 3 46889999877654 332 22 33444443 44 4445555555 33334678887764
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=1.5e-12 Score=120.34 Aligned_cols=236 Identities=13% Similarity=0.216 Sum_probs=154.0
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC------CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG------HQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK 415 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~------~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~ 415 (635)
..+..++++++++.+++...++.|.+|+.. ++.+..+.. +...+..++++
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~----------------------- 85 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV----------------------- 85 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE-----------------------
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE-----------------------
Confidence 345567788999988888889999999987 555555432 22344555542
Q ss_pred eeEEEEEeeCCcEEEEEeC-CCcEEEEeCCCCceeeeecc-CCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018 416 KLMFRICLFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMG-HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQT 491 (635)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~ 491 (635)
.+++..+++... ++.|.+|| .+++.+..+.. +...+.++.+ +++++++...++.|.+||.. ++.+..
T Consensus 86 -------~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 156 (286)
T 1q7f_A 86 -------RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHK 156 (286)
T ss_dssp -------TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred -------cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEE
Confidence 122222333222 56677777 44555555432 3345677776 46677777788999999964 566665
Q ss_pred ecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 492 LSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 492 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
+... .+...+..++++ ++++++...++.|++||.. ++.+..+... .+...+..++++|+|+++++..
T Consensus 157 ~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---------g~~~~p~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 157 FGCS-KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE---------GITNYPIGVGINSNGEILIADN 225 (286)
T ss_dssp EECT-TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT---------TTSCSEEEEEECTTCCEEEEEC
T ss_pred eCCC-CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccC---------CccCCCcEEEECCCCCEEEEeC
Confidence 5421 133457788884 6777777778999999974 4444443221 0124577899999999998888
Q ss_pred CCC-eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 570 DDG-TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 570 ~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
.++ .|.+||. +++.+..+.. ......+.+++++|+|+++++ +.++. +++|.+
T Consensus 226 ~~~~~i~~~~~-~g~~~~~~~~---~~~~~~~~~i~~~~~g~l~vs-~~~~~--v~v~~~ 278 (286)
T 1q7f_A 226 HNNFNLTIFTQ-DGQLISALES---KVKHAQCFDVALMDDGSVVLA-SKDYR--LYIYRY 278 (286)
T ss_dssp SSSCEEEEECT-TSCEEEEEEE---SSCCSCEEEEEEETTTEEEEE-ETTTE--EEEEEC
T ss_pred CCCEEEEEECC-CCCEEEEEcc---cCCCCcceeEEECCCCcEEEE-CCCCe--EEEEEc
Confidence 776 9999995 5777776643 122335789999999997777 56776 444443
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=3e-13 Score=141.36 Aligned_cols=164 Identities=13% Similarity=-0.028 Sum_probs=100.9
Q ss_pred CCccccccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEE---------EE
Q psy18018 17 DPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVIT---------CL 87 (635)
Q Consensus 17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~---------~~ 87 (635)
..+.+.+|...+ ..++|| +++.+.++.... .+....||....+...+.+..|...+ . ..
T Consensus 15 ~~~~~~~~~~~~-~~~~~s----~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 82 (662)
T 3azo_A 15 DAALVASRSGRP-ACVGAV----GDEVWWVAPRPA------EAGRATLVRRRADGAEESALPAPWNV-RNRVFEYSGFPW 82 (662)
T ss_dssp CHHHHHHTCSCC-EEEEEE----TTEEEEEEEETT------TTTEEEEEEECTTSCEEESSCTTCCB-CCCGGGTCCCCE
T ss_pred CHHHHhhcCCcc-ceeEEc----CCeEEEEecCcc------cCCcEEEEEECCCCCcceeCCCCccc-cccccccCCccc
Confidence 346788999998 999999 888777776321 12234468765555566677776554 3 33
Q ss_pred EEc----CCE-EEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCC--CCeEEEEeeC-----CCcceEEEEe--cCC
Q psy18018 88 QFS----GSR-IVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIE--SGECLHVLVG-----HLAAVRCVQY--DGK 153 (635)
Q Consensus 88 ~~s----~~~-l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~--~~~~~~~l~~-----h~~~v~~l~~--~~~ 153 (635)
+|+ |++ |+..+. .+..|.++++. .......+.. |...+..++| ||+
T Consensus 83 ~~~~SPDg~~~la~~~~--------------------~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~ 142 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHF--------------------GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG 142 (662)
T ss_dssp EEECCSSSSCEEEEEBT--------------------TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT
T ss_pred eeeeecCCCeEEEEEEC--------------------CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC
Confidence 332 555 444332 12334444443 2022344544 6778889999 999
Q ss_pred EEEEEeCC----------CeEEEEeCCC------ccceeecc-ccceeE-EeeeccCCCEEEEEeCC--------CcEEE
Q psy18018 154 LVVSGAYD----------YMVKIWNPDT------EECLHAEL-QETEVE-LSHGYALRSRIVSGSDD--------NTLKV 207 (635)
Q Consensus 154 ~l~s~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~d--------g~i~v 207 (635)
.|++++.+ ..|.+||+.+ ++.. .+. .+.... .....+++.+|+.++.+ ..|++
T Consensus 143 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 143 EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEE
T ss_pred EEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEE
Confidence 99999887 6899999988 5543 333 322333 33344566777777644 36788
Q ss_pred EECC-CC
Q psy18018 208 WSAT-TG 213 (635)
Q Consensus 208 wd~~-~~ 213 (635)
||+. ++
T Consensus 222 ~d~~~~g 228 (662)
T 3azo_A 222 ARVTEDG 228 (662)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 8877 45
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=8.2e-13 Score=120.11 Aligned_cols=217 Identities=10% Similarity=0.059 Sum_probs=157.5
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEE
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVV 430 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~ 430 (635)
.++.|++++.++.|.+||..+++.+..+..+. ..+.++.+. |+|+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-------------------------------pdG~ilv 52 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-------------------------------KAGEILF 52 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-------------------------------TTSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-------------------------------CCCCEEE
Confidence 45789999999999999999999998888765 244444443 4555555
Q ss_pred EEeCCCcEEEEeCCCCceeeeeccCC-ccEEEEEe--cCCEEEEEeC-CCcEEEEECCCCceeEEecCCC---cccccEE
Q psy18018 431 SGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMEL--RNNILVSGNA-DSTVKVWDIVSGQCLQTLSGRN---KHQSAVT 503 (635)
Q Consensus 431 ~~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~ 503 (635)
+.++.+..||. +++.+.++..+. ..+.+..+ +++++++.+. ++.+..+|. +++.+..+.... .+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence 34566888888 788888887643 35555554 6788888877 788888886 677777665211 0111222
Q ss_pred E--EEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 504 C--LQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 504 ~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
. ...+++++++...++.|..||.+ |+.+..+... ....++.+.+++++++++..++.|..+|..+
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS------------SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 2 33379999999999999999998 9888776542 2344566778999999999899999999999
Q ss_pred CceEEeeeeccCC-CCCceEEEEEeCCCCeEEEEcc
Q psy18018 582 GEFIRNLVSLDSG-GSGGVVWRIRASETKLVCAVGS 616 (635)
Q Consensus 582 ~~~~~~~~~~~~~-~~~~~i~~l~~s~d~~~l~~~~ 616 (635)
|+.+.++...... ..-..+..++..++|.++++..
T Consensus 196 G~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 196 NRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9999998643211 1234578999999999988873
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=9.1e-12 Score=124.61 Aligned_cols=322 Identities=12% Similarity=0.004 Sum_probs=202.6
Q ss_pred EECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC--Cccceeecccc
Q psy18018 106 WSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD--TEECLHAELQE 181 (635)
Q Consensus 106 Wd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~ 181 (635)
|....+..++++...+++|.++|..+++.+.++.... .+..+.| ||+++++++.|+.|.+||+. +++.+.++...
T Consensus 161 ~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 161 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred cccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 3333345556666677777888888888888776433 4557788 89999999999999999996 77777766655
Q ss_pred ceeEEeeec----cCCCEEEEEeC-CCcEEEEECCCCeEEEEEeCC----------CC-CeEEEEee---CCEEEEeeCc
Q psy18018 182 TEVELSHGY----ALRSRIVSGSD-DNTLKVWSATTGKCLRTLIGH----------TG-GVWSSQMA---GNIIISGSTD 242 (635)
Q Consensus 182 ~~~~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~h----------~~-~v~~~~~~---~~~l~s~~~d 242 (635)
......... +++.+++++.. ++.+.++|..+.+.++++... .. .+..+..+ ..++++...+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 554444444 36777777665 589999999999998877532 12 45566553 4466666777
Q ss_pred eeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCC
Q psy18018 243 RTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDN 322 (635)
Q Consensus 243 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (635)
|.|.++|..........
T Consensus 320 g~v~~vd~~~~~~~~v~--------------------------------------------------------------- 336 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTT--------------------------------------------------------------- 336 (567)
T ss_dssp TEEEEEETTCSSEEEEE---------------------------------------------------------------
T ss_pred CeEEEEecCCCccceee---------------------------------------------------------------
Confidence 88888886542100000
Q ss_pred cchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-CCCeEEEEEccCCceEEeeeC-----CCcceeEEEEeCCEE
Q psy18018 323 LLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMG-----HQSLTSGMELRNNIL 396 (635)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~v~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~l 396 (635)
............|+|++++++++. .++.|.++|+.+++.+..+.. |.+.- ..
T Consensus 337 --------------~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g--~~------ 394 (567)
T 1qks_A 337 --------------EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG--AN------ 394 (567)
T ss_dssp --------------EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC--EE------
T ss_pred --------------eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc--ee------
Confidence 000001122345899999887665 578999999999887665543 21111 11
Q ss_pred EEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEe--CCCcEEEEeCCC-------CceeeeeccCCccE--EEEEec
Q psy18018 397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGS--LDTSIRVWEAES-------GNLRHTLMGHQSLT--SGMELR 465 (635)
Q Consensus 397 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~-------~~~~~~~~~~~~~v--~~~~~~ 465 (635)
++.|++..+.+.+ .++.|.++|..+ .+.++++......- ....++
T Consensus 395 ------------------------~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~ 450 (567)
T 1qks_A 395 ------------------------FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN 450 (567)
T ss_dssp ------------------------EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred ------------------------eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC
Confidence 1223333333222 346677777766 55667766543221 234456
Q ss_pred CCEEEEEeC-------CCcEEEEECCCC-----cee-EEec-----CCCcccccEEEEEe--cCCEEEEEe-----CCCc
Q psy18018 466 NNILVSGNA-------DSTVKVWDIVSG-----QCL-QTLS-----GRNKHQSAVTCLQF--NSRFVITSS-----DDGT 520 (635)
Q Consensus 466 ~~~l~s~~~-------dg~i~iwd~~~~-----~~~-~~~~-----~~~~~~~~v~~~~~--~~~~l~~~~-----~d~~ 520 (635)
++++.+... .++|.++|+.+. ... ..+. +.......+..+.| +|+.+..+. .++.
T Consensus 451 ~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~ 530 (567)
T 1qks_A 451 SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 530 (567)
T ss_dssp CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCE
T ss_pred CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCc
Confidence 677777653 358999999876 211 2221 11112346777888 577776653 3799
Q ss_pred EEEEECCCCceeeeecc
Q psy18018 521 VKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 521 i~vwd~~~~~~~~~~~~ 537 (635)
|.|+|.++++++..+..
T Consensus 531 i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 531 LVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEETTTTEEEEEECC
T ss_pred EEEEECCCceEEEEeCC
Confidence 99999999998877764
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.58 E-value=1.2e-12 Score=136.80 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=174.2
Q ss_pred CCceEEEEecCcEEEEe--cCCCeEEEEEccCCceEEeeeCCCccee---------EEEEe----CCE-EEEEe-CCCcE
Q psy18018 343 VPDLFGFQFDGVHVVSG--SLDTSIRVWEAESGNLRHTLMGHQSLTS---------GMELR----NNI-LVSGN-ADSTV 405 (635)
Q Consensus 343 ~~~~~~~s~~~~~l~~~--~~dg~i~v~~~~~~~~~~~~~~~~~~v~---------~l~~~----~~~-l~s~~-~dg~i 405 (635)
.....++++++..++.. +.++...+|....+.....+..+...+. ...++ ++. |+..+ .+..|
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l 104 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRL 104 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeE
Confidence 34445667665566666 5578899998655555666666665544 44443 566 55444 35677
Q ss_pred EEEEcc--C-Ccc-------------eeEEEEEeeCCcEEEEEeCC----------CcEEEEeCCC------Cceeeeec
Q psy18018 406 KVWDIV--S-GTK-------------KLMFRICLFDGVHVVSGSLD----------TSIRVWEAES------GNLRHTLM 453 (635)
Q Consensus 406 ~iwd~~--~-~~~-------------~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~ 453 (635)
.++++. . +.. ......++|||+.|++++.+ ..|++||+.+ ++. ..+.
T Consensus 105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~ 183 (662)
T 3azo_A 105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELS 183 (662)
T ss_dssp EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESS
T ss_pred EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEE
Confidence 777766 2 321 12233589999999998877 5899999987 544 4444
Q ss_pred -cCCccEEEEEe--cCCEEEEEeCC--------CcEEEEECC-CC---ceeEEecCCCcccccEEEEEe--cCCEEEEEe
Q psy18018 454 -GHQSLTSGMEL--RNNILVSGNAD--------STVKVWDIV-SG---QCLQTLSGRNKHQSAVTCLQF--NSRFVITSS 516 (635)
Q Consensus 454 -~~~~~v~~~~~--~~~~l~s~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 516 (635)
.+...+..+.+ +++.|+.++.+ ..|++||+. ++ +....... +...+..+.| ||+++++++
T Consensus 184 ~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~~~~~~~~~spdg~l~~~~~ 260 (662)
T 3azo_A 184 DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---PEEAIAQAEWAPDGSLIVATD 260 (662)
T ss_dssp CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---TTBCEEEEEECTTSCEEEEEC
T ss_pred ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---CCceEcceEECCCCeEEEEEC
Confidence 44555555444 67788877754 379999998 56 33333332 4567888888 688888888
Q ss_pred CCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE--eCCCCceEEeeeecc
Q psy18018 517 DDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW--DVKTGEFIRNLVSLD 592 (635)
Q Consensus 517 ~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw--d~~~~~~~~~~~~~~ 592 (635)
.++ .|.+||+.+++.......+... ........+..++|+|++++++++.. +.++|| |+.+++ +..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l---- 331 (662)
T 3azo_A 261 RTGWWNLHRVDPATGAATQLCRREEEF---AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA---- 331 (662)
T ss_dssp TTSSCEEEEECTTTCCEEESSCCSSBS---SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC----
T ss_pred CCCCeEEEEEECCCCceeecccccccc---cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe----
Confidence 888 6666776666644322211100 00011222567889999999999998 999999 655565 5555
Q ss_pred CCCCCceEEEE-EeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 593 SGGSGGVVWRI-RASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 593 ~~~~~~~i~~l-~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
..+...+..+ +++++..+++.++.+.. ..+|.+|++
T Consensus 332 -~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~i~~~d~~ 368 (662)
T 3azo_A 332 -AGPWTEWAATLTVSGTRAVGVAASPRTA--YEVVELDTV 368 (662)
T ss_dssp -CSSCCEEEEEEEEETTEEEEEEEETTEE--EEEEEEETT
T ss_pred -cCCCCeEEEEEecCCCEEEEEEcCCCCC--CEEEEEECC
Confidence 3456677777 66555555555565554 668888754
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=2.4e-12 Score=119.57 Aligned_cols=228 Identities=8% Similarity=0.043 Sum_probs=145.7
Q ss_pred CCceEEEEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 343 VPDLFGFQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 343 ~~~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
.....+|+|+++ .++++..++.|..|+..++ ...+..+...+.+++++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~----------------------------- 77 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLN----------------------------- 77 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEEC-----------------------------
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeEC-----------------------------
Confidence 345678999998 7788888999999999876 55666666667777775
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC----CccEEEEEe--cCCEEEEE----e-------------CCCcE
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMEL--RNNILVSG----N-------------ADSTV 478 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~s~----~-------------~dg~i 478 (635)
++|+.+++...++.|.+||..+++........ ...+..+.+ +++++++. . ..+.|
T Consensus 78 --~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 78 --KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp --TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred --CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 23333333323344555555444432221111 112233444 56666662 2 13456
Q ss_pred EEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECC-CCce---eeeeccceecCceeEEeccCc
Q psy18018 479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVK-TGEF---STPLMSSFILNPFYFLIYSQP 552 (635)
Q Consensus 479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 552 (635)
..++.. ++. ..+.. +......+++ +++.+++.+.++.|++|++. +++. ...+ . .+...
T Consensus 156 ~~~~~~-g~~-~~~~~---~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~----------~~~~~ 219 (296)
T 3e5z_A 156 FRLAPD-GTL-SAPIR---DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T----------VEPGK 219 (296)
T ss_dssp EEECTT-SCE-EEEEC---CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C----------CSSSC
T ss_pred EEECCC-CCE-EEeec---CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e----------CCCCC
Confidence 666654 443 33332 4445667777 68888777788999999997 4543 1111 1 13445
Q ss_pred eecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe-CCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 553 LLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA-SETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 553 v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+..++++++|++.++. ++.|.+||.. ++.+..+. .+.. +.+++| +||++.|.+++.++ ||.++++
T Consensus 220 p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-----~~~~-~~~~~f~~~d~~~L~v~t~~~-----l~~~~~~ 285 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-----TPQT-TSNLCFGGPEGRTLYMTVSTE-----FWSIETN 285 (296)
T ss_dssp CCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-----CSSC-CCEEEEESTTSCEEEEEETTE-----EEEEECS
T ss_pred CCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-----CCCC-ceeEEEECCCCCEEEEEcCCe-----EEEEEcc
Confidence 6789999999977766 7889999986 77777763 3344 889999 68999999888876 7887775
Q ss_pred cC
Q psy18018 632 VD 633 (635)
Q Consensus 632 ~~ 633 (635)
..
T Consensus 286 ~~ 287 (296)
T 3e5z_A 286 VR 287 (296)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=5.2e-12 Score=118.73 Aligned_cols=260 Identities=10% Similarity=-0.033 Sum_probs=164.8
Q ss_pred CCcEEEEeCCCCeEEEEee------CCCcceEEEEec-CCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCC
Q psy18018 121 DATLRVWHIESGECLHVLV------GHLAAVRCVQYD-GKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR 193 (635)
Q Consensus 121 dg~i~vwd~~~~~~~~~l~------~h~~~v~~l~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (635)
+++|.++|.++++....+. ........+.++ ++..++...++.|.+||..+++.+.++............+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g 95 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE 95 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC
Confidence 5667777777766554331 122345778784 445555566799999999999988777543333333332444
Q ss_pred CEEEEEe-CCCcEEEEECCCCeEEEEEeCCC-----CCeEEEEeeCCEEEEee--CceeEEEecccceeeeccccccccC
Q psy18018 194 SRIVSGS-DDNTLKVWSATTGKCLRTLIGHT-----GGVWSSQMAGNIIISGS--TDRTLKGWSNAERILAIGQLIDSCE 265 (635)
Q Consensus 194 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~ 265 (635)
+++++. .++.|.+||..+++....+.... .....++++++.++.+. .++.|.++|..+.......
T Consensus 96 -~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i------ 168 (328)
T 3dsm_A 96 -KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL------ 168 (328)
T ss_dssp -EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE------
T ss_pred -eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE------
Confidence 677776 88999999999999887776433 14456666777766665 4899999998765321100
Q ss_pred ccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCc
Q psy18018 266 PTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPD 345 (635)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (635)
.....+.
T Consensus 169 -------------------------------------------------------------------------~~g~~p~ 175 (328)
T 3dsm_A 169 -------------------------------------------------------------------------TIGIQPT 175 (328)
T ss_dssp -------------------------------------------------------------------------ECSSCBC
T ss_pred -------------------------------------------------------------------------EcCCCcc
Confidence 0011223
Q ss_pred eEEEEecCcEEEEecCC----------CeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCc
Q psy18018 346 LFGFQFDGVHVVSGSLD----------TSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGT 414 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~d----------g~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~ 414 (635)
.++++|+|+++++...+ +.|.++|..+++....+.... .....++++
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~---------------------- 233 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN---------------------- 233 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC----------------------
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe----------------------
Confidence 45678888877766554 789999998888776654321 245556654
Q ss_pred ceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee--eccCCccEEEEEec---CCEEEEE----eCCCcEEEEECCC
Q psy18018 415 KKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT--LMGHQSLTSGMELR---NNILVSG----NADSTVKVWDIVS 485 (635)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~----~~dg~i~iwd~~~ 485 (635)
|+++++.++.. .|.+||..+++.... +..+.....+++++ +.++++. ..++.|.+||..
T Consensus 234 ---------~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~- 301 (328)
T 3dsm_A 234 ---------GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ- 301 (328)
T ss_dssp ---------TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred ---------cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence 34444444433 677777766654321 11123456677774 3456665 578999999998
Q ss_pred CceeEEecC
Q psy18018 486 GQCLQTLSG 494 (635)
Q Consensus 486 ~~~~~~~~~ 494 (635)
++.+..+..
T Consensus 302 g~~~~~i~~ 310 (328)
T 3dsm_A 302 GKLIDEFYV 310 (328)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEEe
Confidence 888887763
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=4.1e-12 Score=121.21 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=141.9
Q ss_pred eEEEEecCcEEEEecCC---C--eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeE
Q psy18018 346 LFGFQFDGVHVVSGSLD---T--SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLM 418 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~d---g--~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~ 418 (635)
..+|+|||++|+..+.+ + .|.+|++.+++.......+. +..++|+ ++.|+.++.+.. ........
T Consensus 63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~------~~~~~~~~ 134 (347)
T 2gop_A 63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRR------EDEDFIFE 134 (347)
T ss_dssp EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCC------C-------
T ss_pred CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCC------CcCCcEEE
Confidence 35699999998877653 2 48888888777655444333 7888886 456666553310 00000000
Q ss_pred EE-EEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCC-------cEEEEECCCCcee
Q psy18018 419 FR-ICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADS-------TVKVWDIVSGQCL 489 (635)
Q Consensus 419 ~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg-------~i~iwd~~~~~~~ 489 (635)
.. .+..++..+. ......|.+||+.+++.+..+.. . .+..+.++++ +++++..++ ...+|.+.+++ .
T Consensus 135 ~~~~~~~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFF-DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-E 210 (347)
T ss_dssp --CCCC----------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-E
T ss_pred cccceeecCcccc-cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-e
Confidence 00 0011121111 11235688999988876444444 2 5555555433 666665542 34455444444 3
Q ss_pred EEecCCCcccccEEEEEecCCEEEEEeCC--------CcEEEEECCCCceeeeeccceecCceeEEeccCceec-ccccC
Q psy18018 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDD--------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLC-PHLQF 560 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~ 560 (635)
..+.. + ..+..++.+|++|+.++.+ ..|.+|| +++....... +...+.. +.|+
T Consensus 211 ~~l~~---~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----------~~~~~~~~~~~s- 272 (347)
T 2gop_A 211 EKMFE---K-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-----------VDRGVGQAKIKD- 272 (347)
T ss_dssp EEEEE---E-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-----------CCSEEEEEEEET-
T ss_pred EEecc---C-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-----------CCcccCCccEEc-
Confidence 44433 3 4455567789988877754 3678888 4543322211 2445665 8899
Q ss_pred CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 561 NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 561 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
|+ ++++++.++.++|| +.+++..... .+...|.+++|+| .++++++.++.. ..||.+|
T Consensus 273 dg-~~~~~~~~~~~~l~-~~~g~~~~~~------~~~~~v~~~~~s~--~~~~~~~~~~~~-~~l~~~~ 330 (347)
T 2gop_A 273 GK-VYFTLFEEGSVNLY-IWDGEIKPIA------KGRHWIMGFDVDE--IVVYLKETATRL-RELFTWD 330 (347)
T ss_dssp TE-EEEEEEETTEEEEE-EESSSEEEEE------CSSSEEEEEEESS--SEEEEEECSSSC-CEEEEES
T ss_pred Cc-EEEEEecCCcEEEE-EcCCceEEEe------cCCCeEEeeeeeC--cEEEEEcCCCCh-HHheEeC
Confidence 88 99999999999999 8866653333 3367899999999 666666666652 3678776
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=4e-12 Score=120.42 Aligned_cols=276 Identities=9% Similarity=0.025 Sum_probs=174.0
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEE----
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMF---- 419 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---- 419 (635)
.++|++++..++....++.++.| .++....+..+...+.+++++ +.+++++..++.|.+||..+++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 86 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK 86 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS
T ss_pred eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC
Confidence 34566766666666677788888 355566677777777888886 556667778889999998776543322
Q ss_pred -----EEEeeCCcEEEEEeCC----CcEEEEeCCCCceeeeec--cCCccEEEEEec--CCEEEEEeC------CCcEEE
Q psy18018 420 -----RICLFDGVHVVSGSLD----TSIRVWEAESGNLRHTLM--GHQSLTSGMELR--NNILVSGNA------DSTVKV 480 (635)
Q Consensus 420 -----~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~------dg~i~i 480 (635)
..++++++.+++...+ +.|.+||..+++....+. .+...+.++.++ ++++++... .+.|..
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~ 166 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 166 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEE
Confidence 2356788877776665 689999998876653333 234567777775 556665543 355666
Q ss_pred EECCCCceeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecc
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCP 556 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 556 (635)
+|..+++...... ....+..+++ +++.+ ++.+.++.|.+||+.+ +.....+..... ........+..+
T Consensus 167 ~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~----~~~~~~~~~~~i 238 (333)
T 2dg1_A 167 VSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP----YYFTGHEGPDSC 238 (333)
T ss_dssp ECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE----EECCSSSEEEEE
T ss_pred EeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE----EecCCCCCCCce
Confidence 6665544433222 2334667777 56655 4455678999999974 333322211000 000001356779
Q ss_pred cccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC-CCCCceEEEEEeCCCCeEEEEccCCCe--eEeEEEEEeeecC
Q psy18018 557 HLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS-GGSGGVVWRIRASETKLVCAVGSRNGT--EETKLLVLDFDVD 633 (635)
Q Consensus 557 ~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~d~~~l~~~~~dg~--~~~~l~~~d~~~~ 633 (635)
+++++|+++++...++.|.+||. +++.+..+..... .++...+.+++|+||++.|++++.++. ..-.||.++....
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccC
Confidence 99999998888878899999998 5776666632100 012226889999999877766665531 1235888876543
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=1.5e-11 Score=114.87 Aligned_cols=243 Identities=15% Similarity=0.085 Sum_probs=157.1
Q ss_pred EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCCC-------cceeEEEEe--CCEEEEEeC--CCcE
Q psy18018 347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGHQ-------SLTSGMELR--NNILVSGNA--DSTV 405 (635)
Q Consensus 347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~-------~~v~~l~~~--~~~l~s~~~--dg~i 405 (635)
++++|||+++++++ .++.|.+||..+.+.+..+.... .....++++ +++++++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 34677777766654 35679999999988887765321 134456665 677777753 6889
Q ss_pred EEEEccCCcceeEEEE------EeeCCcEEEEEeCCCcEEEEeCCC-CceeeeeccC----CccEE-EEEe---cCCEEE
Q psy18018 406 KVWDIVSGTKKLMFRI------CLFDGVHVVSGSLDTSIRVWEAES-GNLRHTLMGH----QSLTS-GMEL---RNNILV 470 (635)
Q Consensus 406 ~iwd~~~~~~~~~~~~------~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~----~~~v~-~~~~---~~~~l~ 470 (635)
.++|+.+.+....+.. +....+.+++.+.||++.+.++.+ ++.......+ ..++. ...+ ++ .++
T Consensus 163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~ 241 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLV 241 (386)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEE
T ss_pred EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEE
Confidence 9999999887666542 333456777888999999999976 5553322111 11111 1222 34 344
Q ss_pred EEeCCCcEEEEECCCCc--eeEEec---------CCCcccccEEEEEecCCEEEEEeC----------CCcEEEEECCCC
Q psy18018 471 SGNADSTVKVWDIVSGQ--CLQTLS---------GRNKHQSAVTCLQFNSRFVITSSD----------DGTVKLWDVKTG 529 (635)
Q Consensus 471 s~~~dg~i~iwd~~~~~--~~~~~~---------~~~~~~~~v~~~~~~~~~l~~~~~----------d~~i~vwd~~~~ 529 (635)
..+.+|++++.|+.+.. ....+. +.........++..+++.++.... .+.|.+.|++++
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~ 321 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 321 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46668999999997653 333332 000011122334446676666542 257999999999
Q ss_pred ceeeeeccceecCceeEEeccCceecccccCCCe-EEEE-ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018 530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVIT-SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE 607 (635)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 607 (635)
+.+..+.. ...+.+++|+||++ +|++ ...++.|.++|..+++.++++.. .+| -..|.+++
T Consensus 322 kv~~~i~v------------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~---~~~---p~~l~~s~ 383 (386)
T 3sjl_D 322 ERLAKFEM------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ---LGH---GPQVITTA 383 (386)
T ss_dssp CEEEEEEE------------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC---CCS---SCCEEEEC
T ss_pred eEEEEEEC------------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC---CCC---CceeEECC
Confidence 98887764 34678899999996 6655 45689999999999999998853 233 33556666
Q ss_pred C
Q psy18018 608 T 608 (635)
Q Consensus 608 d 608 (635)
|
T Consensus 384 d 384 (386)
T 3sjl_D 384 D 384 (386)
T ss_dssp C
T ss_pred c
Confidence 5
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=5.4e-11 Score=113.15 Aligned_cols=267 Identities=11% Similarity=-0.057 Sum_probs=172.4
Q ss_pred EecCcEEEEecC--CC---eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccC
Q psy18018 350 QFDGVHVVSGSL--DT---SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVS 412 (635)
Q Consensus 350 s~~~~~l~~~~~--dg---~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~ 412 (635)
.|+++++++... .. .|.++|..+++.+..+.....+ .++++ ++.++.+. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777777664 22 7899999999988887765544 66665 66777765 367899999987
Q ss_pred CcceeEE----------------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeee-eccCCccEEEEEecCCEEEEEe
Q psy18018 413 GTKKLMF----------------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGN 473 (635)
Q Consensus 413 ~~~~~~~----------------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~l~s~~ 473 (635)
.+..... ..++|||++|+++.. ++.|.++| .+++.+.+ +... ..+......++.+++.+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~ 184 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLC 184 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEc
Confidence 6544322 357899999999874 57899999 99998877 5432 22222222345777888
Q ss_pred CCCcEEEEECCCCceeEEecCC--CcccccE-EEE--EecCCEEEEEeCCCcEEEEECCCCcee--eeeccceecCceeE
Q psy18018 474 ADSTVKVWDIVSGQCLQTLSGR--NKHQSAV-TCL--QFNSRFVITSSDDGTVKLWDVKTGEFS--TPLMSSFILNPFYF 546 (635)
Q Consensus 474 ~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v-~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~ 546 (635)
.||.+.++|. +++........ .....++ ... ..++..++..+.++.+.+.|+.+.... ..+..... .....
T Consensus 185 ~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~-~~~~~ 262 (373)
T 2mad_H 185 AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG-GRKAD 262 (373)
T ss_pred CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC-ccccc
Confidence 9999999999 87766432210 0011221 112 223344343446789999999765321 11110000 00000
Q ss_pred EeccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEc
Q psy18018 547 LIYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVG 615 (635)
Q Consensus 547 ~~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~ 615 (635)
.........++++||++.+.++.. ++.|.++|+.+++.+..+. ......+++|+|||+ +|+++
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCCCCeEEEEE
Confidence 001122344778999988777643 3589999999999998883 233578999999999 77777
Q ss_pred c-CCCeeEeEEEEEeeec
Q psy18018 616 S-RNGTEETKLLVLDFDV 632 (635)
Q Consensus 616 ~-~dg~~~~~l~~~d~~~ 632 (635)
. .++. |.++|.+.
T Consensus 337 ~~~~~~----V~ViD~~t 350 (373)
T 2mad_H 337 SAGTEV----LHIYDAGA 350 (373)
T ss_pred cCCCCe----EEEEECCC
Confidence 6 4676 78888754
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=1.4e-11 Score=111.91 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=127.3
Q ss_pred EEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCC
Q psy18018 348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDG 426 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 426 (635)
.++|+|+.++ +.++.|..||. +++.+..+..+. ..+.+..+ .++|
T Consensus 43 ~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~-------------------------------~~dG 88 (276)
T 3no2_A 43 AATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI-------------------------------LPDG 88 (276)
T ss_dssp EECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE-------------------------------CTTS
T ss_pred EECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE-------------------------------CCCC
Confidence 3667777777 33567888888 788877776542 23333333 2445
Q ss_pred cEEEEEeC-CCcEEEEeCCCCceeeeecc------CCccE--EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018 427 VHVVSGSL-DTSIRVWEAESGNLRHTLMG------HQSLT--SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 427 ~~l~~~~~-d~~i~~~d~~~~~~~~~~~~------~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 497 (635)
+.+++.+. ++.+..+|. +++.+.++.. +.... .....+++++++...++.|..||.+ ++.+..+...
T Consensus 89 ~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-- 164 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-- 164 (276)
T ss_dssp CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--
T ss_pred CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--
Confidence 55555444 445555553 4554444321 11111 1334578899999999999999998 9999988752
Q ss_pred ccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEec--CC--
Q psy18018 498 HQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS--DD-- 571 (635)
Q Consensus 498 ~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d-- 571 (635)
....++.. +++.+++++.++.|..+|..+++.+..+........ ....+..++..++|.++++.. ..
T Consensus 165 --~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-----~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 165 --GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-----QLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp --SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-----CCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred --CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-----cccccccceEcCCCCEEEEeccCcccc
Confidence 12223333 688999998888999999999998887754211100 112366778889999998873 21
Q ss_pred ----CeEEEEeC-CCCceEEeeeec
Q psy18018 572 ----GTVKLWDV-KTGEFIRNLVSL 591 (635)
Q Consensus 572 ----~~v~iwd~-~~~~~~~~~~~~ 591 (635)
+..+++++ .+|+.+.++...
T Consensus 238 ~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 238 AGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp GGGSCCCSEEEECTTSBEEEEECCT
T ss_pred ccccCCceEEEECCCCCEEEEecCc
Confidence 24466666 678888888543
No 188
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.52 E-value=1.1e-07 Score=101.19 Aligned_cols=488 Identities=10% Similarity=0.065 Sum_probs=274.2
Q ss_pred EEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCc----ceEEEEEEc-CCEEEEeeCCCcE
Q psy18018 29 ITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDD----HVITCLQFS-GSRIVSGSDDNTL 103 (635)
Q Consensus 29 i~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~----~vi~~~~~s-~~~l~s~~~d~~v 103 (635)
|++|... ++|.+-+... .+ +..||..+.+.. .+..... .| .++..+ ...|..++. +.|
T Consensus 90 I~~i~~d----~~g~lWigT~-~G---------l~~yd~~~~~f~-~~~~~~~~~~~~i-~~i~~d~~g~lwi~t~-~gl 152 (795)
T 4a2l_A 90 SRIVKTD----SQGRVWIGTR-DG---------LSRYDEEKDIFQ-NFFYEKNGKHLQV-NGIEEISPEQLLISTP-EGL 152 (795)
T ss_dssp EEEEEEC----TTSCEEEEES-SC---------EEEEETTTTEEE-EECCEETTEECCC-CEEEEEETTEEEEEET-TEE
T ss_pred eeEEEEC----CCCCEEEEeC-Cc---------hheeCCCCCeEE-eccccccCCCceE-EEEEECCCCCEEEEEC-Cce
Confidence 4888888 7776554433 11 334887654422 2222111 14 778777 444444554 458
Q ss_pred EEEECCCCcE---------------E-------EEEeeCCCcEEEEeCCCCeEEEEe-eCCCcceEEEEe-cCCEEEEEe
Q psy18018 104 KVWSATTGKC---------------L-------LVSGSRDATLRVWHIESGECLHVL-VGHLAAVRCVQY-DGKLVVSGA 159 (635)
Q Consensus 104 ~vWd~~~~~~---------------l-------l~~~~~dg~i~vwd~~~~~~~~~l-~~h~~~v~~l~~-~~~~l~s~~ 159 (635)
..||.++++. + +..++.++-+..|+.++++..... ..+...|.++.. ....|..++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt 232 (795)
T 4a2l_A 153 IMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT 232 (795)
T ss_dssp EEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE
T ss_pred EEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE
Confidence 8888765321 1 444665556888888776544321 123567888887 455566666
Q ss_pred CCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-------CCCC
Q psy18018 160 YDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG-------HTGG 225 (635)
Q Consensus 160 ~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------h~~~ 225 (635)
.++-+..||..+++....... ....+........+.|.+|+.+ -|.+||..+++....... ....
T Consensus 233 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (795)
T 4a2l_A 233 EGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS 311 (795)
T ss_dssp BSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred CCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence 555588999887654322111 1233444444556778888876 588999887765433211 2356
Q ss_pred eEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchh
Q psy18018 226 VWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPED 304 (635)
Q Consensus 226 v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (635)
|.++..+ ...+..|+.++-|..++.............
T Consensus 312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~------------------------------------------ 349 (795)
T 4a2l_A 312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIP------------------------------------------ 349 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCT------------------------------------------
T ss_pred EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCC------------------------------------------
Confidence 8888886 456777888788888876543211000000
Q ss_pred hHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeC---
Q psy18018 305 LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG--- 381 (635)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~--- 381 (635)
............+...++| .|.+|+.++-|..|+..+++.......
T Consensus 350 ------------------------------~~~~l~~~~V~~i~~d~~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 350 ------------------------------YKNSLSDNVVSCIVEDKDK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp ------------------------------TSSSCSCSSEEEEEECTTS-CEEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred ------------------------------CCCCCCCCeeEEEEECCCC-CEEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 0000001111222233344 466688777799999877654432211
Q ss_pred -----CCcceeEEEEe-CCE-EEEEeCCCcEEEEEccCCccee------------EEEE-EeeCCcEEEEEeCCCcEEEE
Q psy18018 382 -----HQSLTSGMELR-NNI-LVSGNADSTVKVWDIVSGTKKL------------MFRI-CLFDGVHVVSGSLDTSIRVW 441 (635)
Q Consensus 382 -----~~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~------------~~~~-~~~~~~~l~~~~~d~~i~~~ 441 (635)
....|.++..+ ... |..|+.++.+..+|..+++... ...+ ..++|. |..|+.+ -+..|
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~~-Gl~~~ 476 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTLS-ALVRF 476 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEESS-CEEEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEecC-ceeEE
Confidence 23568888886 344 8888887889999887654221 1112 233444 5555554 58889
Q ss_pred eCCCCceeeeecc------CCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC----CCcccccEEEEEec-C
Q psy18018 442 EAESGNLRHTLMG------HQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG----RNKHQSAVTCLQFN-S 509 (635)
Q Consensus 442 d~~~~~~~~~~~~------~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~-~ 509 (635)
|..+++....... ....|.++..+. ..+..|+. +-+..||..+++. .+.. .......|.++..+ .
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC
Confidence 9887655332211 235678887753 34445555 4588999877665 2221 11234568888884 2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 510 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
..+..++.. -+..||..+++... +.... . .....|.++...++|++.+++ . +-+..||.++++. ..+.
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~--g-----l~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~~~~ 621 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKR-YNTTN--G-----LPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKF-RNFT 621 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEE-ECGGG--T-----CSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE-EEEC
T ss_pred CCEEEEeCC-CceeECCCCCcEEE-eCCCC--C-----CchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcE-EEcC
Confidence 334445545 48889987765432 21100 0 013457788888889877755 3 4588899887653 3442
Q ss_pred eccCCCCCceE--EEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 590 SLDSGGSGGVV--WRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 590 ~~~~~~~~~~i--~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
..+. -....+ .++...++|++.+ |+.+| +..+|++
T Consensus 622 ~~dG-l~~~~f~~~~~~~~~~G~l~~-g~~~G-----l~~~~p~ 658 (795)
T 4a2l_A 622 ESDG-LQSNQFNTASYCRTSVGQMYF-GGING-----ITTFRPE 658 (795)
T ss_dssp GGGT-CSCSCEEEEEEEECTTSCEEE-EETTE-----EEEECGG
T ss_pred CcCC-CccccCccCceeECCCCeEEE-ecCCc-----eEEEcHH
Confidence 2111 112222 5777788887655 66667 4455543
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.50 E-value=2.6e-11 Score=115.59 Aligned_cols=292 Identities=13% Similarity=0.111 Sum_probs=160.4
Q ss_pred ceEEEEecCCEEEEEe---------CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCC---C--cEEEEE
Q psy18018 144 AVRCVQYDGKLVVSGA---------YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDD---N--TLKVWS 209 (635)
Q Consensus 144 ~v~~l~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g--~i~vwd 209 (635)
.+...++||++++... .++.|.+||+.+++... + .........+++.+|+..+.+ + .|.+||
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 3444555888887653 36789999999876432 2 233334555667788877653 2 488889
Q ss_pred CCCCeEEEEEeCCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 210 ATTGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 210 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
+.+++.......+. +..+.|+ ++.|+.++.+.. .....
T Consensus 92 ~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~------~~~~~-------------------------------- 131 (347)
T 2gop_A 92 LETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRR------EDEDF-------------------------------- 131 (347)
T ss_dssp TTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCC------C------------------------------------
T ss_pred CCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCC------CcCCc--------------------------------
Confidence 88887665554333 7788884 666776654310 00000
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 367 (635)
....-+.+..+|..+. ......|++
T Consensus 132 ------------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~l~~ 156 (347)
T 2gop_A 132 ------------------------------------------------------IFEDDVPAWFDDLGFF-DGEKTTFWI 156 (347)
T ss_dssp -----------------------------------------------------------CCCC----------CEEEEEE
T ss_pred ------------------------------------------------------EEEcccceeecCcccc-cCccceEEE
Confidence 0000000111221111 122356889
Q ss_pred EEccCCceEEeeeCCCcceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeC-CCcEEEEeCCC
Q psy18018 368 WEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSL-DTSIRVWEAES 445 (635)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~ 445 (635)
|++.+++.+..+.. . .+..+.|+++ +++++..++. . +. .. ...|.++| +
T Consensus 157 ~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~---------~---------~~-------~~~~~~l~~~d--~ 207 (347)
T 2gop_A 157 FDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI---------I---------PQ-------YFKFWDIYIWE--D 207 (347)
T ss_dssp EETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS---------S---------CC-------SSCCEEEEEEE--T
T ss_pred EECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc---------c---------cc-------ccccccEEEeC--C
Confidence 99988776344443 3 5666666532 3333322210 0 00 00 11233444 3
Q ss_pred CceeeeeccCCccEEEEEecCCEEEEEeCC--------CcEEEEECCCCceeEEecCCCcccccEEE-EEe-cCCEEEEE
Q psy18018 446 GNLRHTLMGHQSLTSGMELRNNILVSGNAD--------STVKVWDIVSGQCLQTLSGRNKHQSAVTC-LQF-NSRFVITS 515 (635)
Q Consensus 446 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l~~~ 515 (635)
++. ..+..+ ..+..++++++.++.++.+ ..|.+|| +++....... +...+.. +.| ++ +++++
T Consensus 208 ~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~sdg-~~~~~ 279 (347)
T 2gop_A 208 GKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKDGK-VYFTL 279 (347)
T ss_dssp TEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEETTE-EEEEE
T ss_pred Cce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEcCc-EEEEE
Confidence 333 233333 4555567788877776644 3688888 5554433333 4556665 667 55 88899
Q ss_pred eCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE-EEEeCCCCceEEee
Q psy18018 516 SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV-KLWDVKTGEFIRNL 588 (635)
Q Consensus 516 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v-~iwd~~~~~~~~~~ 588 (635)
+.++.+++| +.+++..... .+...|.+++|+| .++++++.++.. .||.+. ++ ...+
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~l 336 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQL 336 (347)
T ss_dssp EETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEEC
T ss_pred ecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEe
Confidence 999999999 8755432211 2356788899999 677777766654 777776 55 3344
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=4.6e-11 Score=112.52 Aligned_cols=180 Identities=10% Similarity=0.049 Sum_probs=115.4
Q ss_pred cceEEEEEecCCCCCCCceeecCCcchheee----------------ccceeeeeeecCCCCCCceee-ccCcceEEEEE
Q psy18018 26 DHVITCLQFSGKSFPCESFIRSSSPWKALFM----------------SHRSVEINWRTRPIKDPKVLK-GHDDHVITCLQ 88 (635)
Q Consensus 26 ~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~----------------~~~~~~~iwd~~~~~~~~~l~-~h~~~vi~~~~ 88 (635)
+.+ ++|||+ |+|+++++...++.+.. ..+..+.+||..+++.+..+. ++-..+ ..++
T Consensus 24 ~~v-~~va~d----~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p-~gia 97 (329)
T 3fvz_A 24 GQV-SGVALD----SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP-HGLS 97 (329)
T ss_dssp SCE-EEEEEC----TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE-EEEE
T ss_pred CCc-eEEEEC----CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc-eEEE
Confidence 456 899999 99999988776532110 011346679998888776655 344456 8999
Q ss_pred Ec--CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEe---------eCCCcceEEEEe---cCCE
Q psy18018 89 FS--GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVL---------VGHLAAVRCVQY---DGKL 154 (635)
Q Consensus 89 ~s--~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l---------~~h~~~v~~l~~---~~~~ 154 (635)
++ |+++++...++.|++||...... .+..+ .++......+++ ++..
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~--------------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEG--------------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSC--------------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeE--------------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence 98 88888888888899998753211 11222 234556788999 3566
Q ss_pred EEEEe-CCCeEEEEeCCCccceeeccccc----------eeEEeeec-cC-CCEEEEEeCCCcEEEEECCCCeEEEEEe-
Q psy18018 155 VVSGA-YDYMVKIWNPDTEECLHAELQET----------EVELSHGY-AL-RSRIVSGSDDNTLKVWSATTGKCLRTLI- 220 (635)
Q Consensus 155 l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~~~~~~~-~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 220 (635)
+++.+ .++.|++|+ .+++.+..+.... .....+.+ ++ +..+++...++.|++||..+++.+..+.
T Consensus 158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 66665 699999999 4555544432111 11233333 34 4455555677899999998888888774
Q ss_pred -CCCCCeEEEEee
Q psy18018 221 -GHTGGVWSSQMA 232 (635)
Q Consensus 221 -~h~~~v~~~~~~ 232 (635)
.+...+.++++.
T Consensus 237 ~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 237 ASFGRNVFAISYI 249 (329)
T ss_dssp TTTTTCEEEEEEE
T ss_pred cccCCCcceeeec
Confidence 344455555544
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.4e-11 Score=115.07 Aligned_cols=268 Identities=14% Similarity=0.059 Sum_probs=180.4
Q ss_pred EEecCcEEEEecC-----CCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEcc
Q psy18018 349 FQFDGVHVVSGSL-----DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIV 411 (635)
Q Consensus 349 ~s~~~~~l~~~~~-----dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~ 411 (635)
..|+++.+++... ++.|.++|..+++.+..+.....+ . ++++ ++.++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4688998888866 579999999999999888765555 3 7776 55666554 36789999999
Q ss_pred CCcceeEEE----------------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEe-cCCEEEEE
Q psy18018 412 SGTKKLMFR----------------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSG 472 (635)
Q Consensus 412 ~~~~~~~~~----------------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~ 472 (635)
+.+...... .++|||++++++.. ++.|.++|+.+++.+.++.... ...+.+ ..+.+++.
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTFFMH 195 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCceeEEE
Confidence 988765542 47889999998874 6899999999999998885432 123333 45678888
Q ss_pred eCCCcEEEEECCC-CceeEEecCC-CcccccEE-EEEe---cCCEEEEEeCCCcEEEEECCCCce--eeeeccceecCce
Q psy18018 473 NADSTVKVWDIVS-GQCLQTLSGR-NKHQSAVT-CLQF---NSRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPF 544 (635)
Q Consensus 473 ~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~v~-~~~~---~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~ 544 (635)
+.||++.+.++.+ ++........ .....++. ...| +|++++ .+.+|.+++.|+.++.. ..+... ......
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~-~~~~~~ 273 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA-LTEAER 273 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES-SCHHHH
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec-cccccc
Confidence 9999999999976 5543222110 00112221 1233 465544 55689999999976642 222210 000000
Q ss_pred eEEeccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEE
Q psy18018 545 YFLIYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCA 613 (635)
Q Consensus 545 ~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~ 613 (635)
...........++++|+++.|..... .+.|.+.|+++++.++.+. ...++++|+|++|++ +|+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------vg~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSINVSQDEKPLLY 347 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECSSSSCEEE
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------CCCCcceEEECCCCCeEEE
Confidence 00001233445778899888777643 2579999999999999884 235789999999997 666
Q ss_pred Ec-cCCCeeEeEEEEEeeec
Q psy18018 614 VG-SRNGTEETKLLVLDFDV 632 (635)
Q Consensus 614 ~~-~~dg~~~~~l~~~d~~~ 632 (635)
+. ..++. |.++|...
T Consensus 348 ~tn~~~~~----VsViD~~t 363 (386)
T 3sjl_D 348 ALSTGDKT----LYIHDAES 363 (386)
T ss_dssp EEETTTTE----EEEEETTT
T ss_pred EEcCCCCe----EEEEECCC
Confidence 64 45777 67777653
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=5.1e-10 Score=106.40 Aligned_cols=195 Identities=8% Similarity=-0.030 Sum_probs=113.1
Q ss_pred eEEEEecCcEEEEecC--CCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEE
Q psy18018 346 LFGFQFDGVHVVSGSL--DTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRIC 422 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 422 (635)
.+.++|||++|+++.. ++.|.++| .+++.+.. +.... .+......+..+++.+.||.+..++. +++
T Consensus 129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-------- 197 (373)
T 2mad_H 129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-------- 197 (373)
T ss_pred ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEEEcCCCCEEEEEC-CCc--------
Confidence 4569999999998874 47899999 98888766 54321 11111112334444555555555555 332
Q ss_pred eeCCcEEEEEeCCCcEEEEeCCCCceeeeec-----cCCccE-E--EEEecCCEEEEEeCCCcEEEEECCCCc--eeEEe
Q psy18018 423 LFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-----GHQSLT-S--GMELRNNILVSGNADSTVKVWDIVSGQ--CLQTL 492 (635)
Q Consensus 423 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~v-~--~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~ 492 (635)
...... ....++ . ....++..++..+..+.+.+.|+.... .+..+
T Consensus 198 -------------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 198 -------------------------AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred -------------------------EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 221110 001111 0 112223333333356677777775442 12222
Q ss_pred cCCC-------cccccE--EEEEecCCEEEEEeC----------CCcEEEEECCCCceeeeeccceecCceeEEeccCce
Q psy18018 493 SGRN-------KHQSAV--TCLQFNSRFVITSSD----------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPL 553 (635)
Q Consensus 493 ~~~~-------~~~~~v--~~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v 553 (635)
.... ...... ..+..+++.++++.. ++.|.++|..+++.+..+.. ....
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------------g~~p 320 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------------GHDV 320 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------------CCCc
Confidence 1100 011112 223336676666543 35799999999998877753 3357
Q ss_pred ecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEee
Q psy18018 554 LCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 554 ~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~ 588 (635)
.+++|+|||+ +++++. .++.|.++|+.+++.+..+
T Consensus 321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8899999999 777776 5899999999999999884
No 193
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.48 E-value=4.7e-08 Score=104.03 Aligned_cols=455 Identities=10% Similarity=0.054 Sum_probs=257.1
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEECCCCcEE-----------------------EEEeeCCCcEEEEeCCCCeEEEEee
Q psy18018 84 ITCLQFS-GSRIVSGSDDNTLKVWSATTGKCL-----------------------LVSGSRDATLRVWHIESGECLHVLV 139 (635)
Q Consensus 84 i~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~l-----------------------l~~~~~dg~i~vwd~~~~~~~~~l~ 139 (635)
|.++..+ ...|-.|+.+| +..||..+++.. +..++. +.+..||.++++......
T Consensus 90 I~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~ 167 (795)
T 4a2l_A 90 SRIVKTDSQGRVWIGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-EGLIMFDIKESKFIDDSF 167 (795)
T ss_dssp EEEEEECTTSCEEEEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-TEEEEEETTTTEEECSSS
T ss_pred eeEEEECCCCCEEEEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-CceEEEECCCCEEEeccC
Confidence 4899888 44455566555 788887654321 233333 347777776655332111
Q ss_pred CC-Ccc-eEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeecc-ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeE
Q psy18018 140 GH-LAA-VRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAEL-QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKC 215 (635)
Q Consensus 140 ~h-~~~-v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 215 (635)
++ ... |.++.. ....|..++.++-+..|+..+++...... .....+........+.+.+++.++-+..||..+++.
T Consensus 168 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 168 STAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEI 247 (795)
T ss_dssp CHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEE
T ss_pred CCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeE
Confidence 11 123 888877 35566667776568899987765432211 112223333344567788888665699999887665
Q ss_pred EEEEeC-------CCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 216 LRTLIG-------HTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 216 ~~~~~~-------h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
...... ....|.++..+ ...+..|+.+ -+.+|+..+...........
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~------------------------ 302 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPV------------------------ 302 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTT------------------------
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCC------------------------
Confidence 433221 13568888885 4456666655 57788765433211000000
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEE
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRV 367 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v 367 (635)
............+...++|. +..|+.++-|..
T Consensus 303 -----------------------------------------------~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~ 334 (795)
T 4a2l_A 303 -----------------------------------------------ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNY 334 (795)
T ss_dssp -----------------------------------------------STTSCSSSCEEEEEECTTSC-EEEEESSSCEEE
T ss_pred -----------------------------------------------CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEE
Confidence 00000111122233334454 666777777888
Q ss_pred EEccCCceEEeee------CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCccee----------------EEEE-Ee
Q psy18018 368 WEAESGNLRHTLM------GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKL----------------MFRI-CL 423 (635)
Q Consensus 368 ~~~~~~~~~~~~~------~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~~~-~~ 423 (635)
|+..++....... .....|.++..+ ...|..|+.++-|..|+..++.... ...+ ..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 8876554322111 123468888887 4567788888888888876543211 1122 23
Q ss_pred eCCcEEEEEeCCCcEEEEeCCCCceeeeec----cCCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEecC---C
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLSG---R 495 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~ 495 (635)
.++..|..|+.++-+..+|..+++...-.. .....|.++..+. ..|..|+.+ -+..||..+++....... .
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEEECCBCTTCC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEEEcccccccc
Confidence 455547778887789999998776543221 1345688888753 344555554 589999887654332211 0
Q ss_pred CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018 496 NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574 (635)
Q Consensus 496 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v 574 (635)
......|.++..+ ...+..|+. +-|..||..+++. .+....... ......|.++...++|++.+... . -+
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~----~l~~~~i~~i~~d~~g~lWigT~-~-Gl 564 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVS----NVTKLFTNCIYEASNGIIWVGTR-E-GF 564 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSC----GGGGSCEEEEEECTTSCEEEEES-S-CE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCC----CCCCCeeEEEEECCCCCEEEEeC-C-Cc
Confidence 1123568888884 333444555 4588899877654 221100000 01245688888888998766443 3 48
Q ss_pred EEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
..||..+++.. .+... ..-....|.++...++|.+.+++ .+| |..+|++
T Consensus 565 ~~~d~~~~~~~-~~~~~-~gl~~~~i~~i~~d~~g~lWi~t-~~G-----l~~~~~~ 613 (795)
T 4a2l_A 565 YCFNEKDKQIK-RYNTT-NGLPNNVVYGILEDSFGRLWLST-NRG-----ISCFNPE 613 (795)
T ss_dssp EEEETTTTEEE-EECGG-GTCSCSCEEEEEECTTSCEEEEE-TTE-----EEEEETT
T ss_pred eeECCCCCcEE-EeCCC-CCCchhheEEEEECCCCCEEEEc-CCc-----eEEEcCC
Confidence 88998776543 33211 12234569999999999876655 456 4555543
No 194
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.48 E-value=4.3e-11 Score=123.43 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=108.6
Q ss_pred cEEEEeCCCCceeeeecc--CC--------cc-EEEEEecC---CEEEEEeCCCcEEEEECCCCceeEEecCCCc-----
Q psy18018 437 SIRVWEAESGNLRHTLMG--HQ--------SL-TSGMELRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRNK----- 497 (635)
Q Consensus 437 ~i~~~d~~~~~~~~~~~~--~~--------~~-v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----- 497 (635)
.|..+|..+|+.+..++. |. .+ +.....++ +.++.++.+|.++++|..+++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999998877664 21 12 22333456 6899999999999999999998877653110
Q ss_pred ---ccccE------------------------EEEEe--cCCEEEEEeC-------------------------------
Q psy18018 498 ---HQSAV------------------------TCLQF--NSRFVITSSD------------------------------- 517 (635)
Q Consensus 498 ---~~~~v------------------------~~~~~--~~~~l~~~~~------------------------------- 517 (635)
...++ ..+++ +..++++...
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 00001 02344 3556665432
Q ss_pred ------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceE
Q psy18018 518 ------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFI 585 (635)
Q Consensus 518 ------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~ 585 (635)
.|.|..||+.+++.+..... ..++....++.++.++++++.||.+++||.++|+.+
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCC------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 27799999999987766543 233445556678888888999999999999999999
Q ss_pred EeeeeccCCCCCceEEEEEeCCCCe-EEEE
Q psy18018 586 RNLVSLDSGGSGGVVWRIRASETKL-VCAV 614 (635)
Q Consensus 586 ~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~ 614 (635)
..+.. ++.....-+.|+.+|+ ++++
T Consensus 512 w~~~~----~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 512 WEAPT----GTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEC----SSCCCSCCEEEEETTEEEEEE
T ss_pred eeeeC----CCCcccCCEEEEeCCEEEEEE
Confidence 98853 2222223445668887 4444
No 195
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.48 E-value=6.1e-11 Score=122.51 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=106.1
Q ss_pred cEEEEeCCCCceeeeecc--CC-------ccE--EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCC------
Q psy18018 437 SIRVWEAESGNLRHTLMG--HQ-------SLT--SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRN------ 496 (635)
Q Consensus 437 ~i~~~d~~~~~~~~~~~~--~~-------~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 496 (635)
.|..+|..+|+.+..++. |. ... ..+.++++ .++.++.+|.++++|..+++.+.......
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 499999999999887764 22 111 12334554 78899999999999999999875443210
Q ss_pred -------------------cccccE-----------EEEEe--cCCEEEEEeC---------------------------
Q psy18018 497 -------------------KHQSAV-----------TCLQF--NSRFVITSSD--------------------------- 517 (635)
Q Consensus 497 -------------------~~~~~v-----------~~~~~--~~~~l~~~~~--------------------------- 517 (635)
.....+ ..+++ +..++++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 000000 01333 3345554421
Q ss_pred ------------------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 518 ------------------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 518 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
+|.|+.||+.+++.+...... .+...-.++..+.++++++.||.++.||.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------------TIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------------CCccCccceECCCEEEEECCCCcEEEEEC
Confidence 377999999999877665432 23333456667889999999999999999
Q ss_pred CCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018 580 KTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS 616 (635)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~ 616 (635)
++|+.+.++.. +......-+.|+.||+ |+++.+
T Consensus 504 ~tG~~lw~~~~----~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 504 DTGEKLWEQPA----ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp TTCCEEEEEEC----SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCccceeeeC----CCCcccCceEEEECCEEEEEEEe
Confidence 99999998852 2222223356678887 555443
No 196
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=1e-10 Score=107.89 Aligned_cols=235 Identities=11% Similarity=0.174 Sum_probs=147.9
Q ss_pred CCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc------cceeEEeeec-cCCCEEEEEeC--CCcEEEE
Q psy18018 140 GHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ------ETEVELSHGY-ALRSRIVSGSD--DNTLKVW 208 (635)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~~~-~~~~~l~~~~~--dg~i~vw 208 (635)
+|-....++++ +++.+++...++.|.+||.+ ++.+..+.. +........+ .+++.++++.. ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45567889998 67888888889999999987 444443322 1122333344 45566666653 7899999
Q ss_pred ECCCCeEEEEEe-CCCCCeEEEEee--CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecccccccee
Q psy18018 209 SATTGKCLRTLI-GHTGGVWSSQMA--GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFI 285 (635)
Q Consensus 209 d~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (635)
| .+++.+..+. .+...+..++++ ++.+++...++.|.+|+.........
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~--------------------------- 157 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF--------------------------- 157 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE---------------------------
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEe---------------------------
Confidence 9 6677777764 344578888885 67777777889999998653211000
Q ss_pred eccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeE
Q psy18018 286 SLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSI 365 (635)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i 365 (635)
........+..++++++++.+++...++.|
T Consensus 158 --------------------------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 187 (286)
T 1q7f_A 158 --------------------------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAHCV 187 (286)
T ss_dssp --------------------------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred --------------------------------------------------CCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence 000011223457788999888887888999
Q ss_pred EEEEccCCceEEeeeCC--CcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCC-cEEEEe
Q psy18018 366 RVWEAESGNLRHTLMGH--QSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDT-SIRVWE 442 (635)
Q Consensus 366 ~v~~~~~~~~~~~~~~~--~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d 442 (635)
++|+.. ++.+..+..+ ...+..++++ ++|+.+++...++ .|.+|+
T Consensus 188 ~~~~~~-g~~~~~~~~~g~~~~p~~i~~d-------------------------------~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 188 KVFNYE-GQYLRQIGGEGITNYPIGVGIN-------------------------------SNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEEC-------------------------------TTCCEEEEECSSSCEEEEEC
T ss_pred EEEcCC-CCEEEEEccCCccCCCcEEEEC-------------------------------CCCCEEEEeCCCCEEEEEEC
Confidence 999974 5555555432 2344455543 4454455554454 677777
Q ss_pred CCCCceeeeeccCCc--cEEEEEec--CCEEEEEeCCCcEEEEECCCCc
Q psy18018 443 AESGNLRHTLMGHQS--LTSGMELR--NNILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 443 ~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~ 487 (635)
. +++.+..+..+.. .+.+++++ ++++++ +.|+.|++|++....
T Consensus 236 ~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 236 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred C-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 4 3555555544332 35566664 555555 679999999986543
No 197
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=1.2e-10 Score=120.16 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=63.3
Q ss_pred CcEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE-E
Q psy18018 436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV-I 513 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~ 513 (635)
+.|..||+.+++.+.++..... .-..+...+.+++.++.||.+++||.++++.+..+...............+|+.+ +
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 7899999999999888764322 1123555788899999999999999999999999875332222222234567644 4
Q ss_pred EEeC----------------CCcEEEEECCC
Q psy18018 514 TSSD----------------DGTVKLWDVKT 528 (635)
Q Consensus 514 ~~~~----------------d~~i~vwd~~~ 528 (635)
+.+. .+.+..|.+..
T Consensus 537 ~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 537 VAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EeccCCccccccccccccCCCCeEEEEeccc
Confidence 3222 35677777763
No 198
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.2e-10 Score=122.38 Aligned_cols=264 Identities=12% Similarity=0.020 Sum_probs=168.7
Q ss_pred EecCcEEEEecCC-----CeEEEEEccCCceEEeee------CCCcceeEEEEe--CCEEEEEeCCC-----cEEEEEcc
Q psy18018 350 QFDGVHVVSGSLD-----TSIRVWEAESGNLRHTLM------GHQSLTSGMELR--NNILVSGNADS-----TVKVWDIV 411 (635)
Q Consensus 350 s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~--~~~l~s~~~dg-----~i~iwd~~ 411 (635)
.|+|++++....+ +.+.+.+...++....+. +|...+..++|+ ++.|+.+..++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 4888887754432 234444444444332221 233467788887 56776655433 89999999
Q ss_pred CCcceeEE--------EEEeeCCcEEEEEeCCCc----------------EEEEeCCCCce----eeeeccCCccEEEEE
Q psy18018 412 SGTKKLMF--------RICLFDGVHVVSGSLDTS----------------IRVWEAESGNL----RHTLMGHQSLTSGME 463 (635)
Q Consensus 412 ~~~~~~~~--------~~~~~~~~~l~~~~~d~~----------------i~~~d~~~~~~----~~~~~~~~~~v~~~~ 463 (635)
+++..... ..++|||+.|+.+..++. |++|++.+++. +.....|...+..+.
T Consensus 160 tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 160 GAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 88754321 247899999999988766 99999988763 222223445555555
Q ss_pred e--cCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEecCCCcccccE-EEEEecCCEEEEEeCC----CcEEEE
Q psy18018 464 L--RNNILVSGNA-----DSTVKVWDIVS------GQ-CLQTLSGRNKHQSAV-TCLQFNSRFVITSSDD----GTVKLW 524 (635)
Q Consensus 464 ~--~~~~l~s~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d----~~i~vw 524 (635)
+ ++++|+..+. +..|++||+.+ +. ....+.. +...+ ..+..+|+.|+..+.+ +.|.+|
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID---NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC---SSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC---CCCcEEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 5 6777776654 56899999976 43 3444544 22222 3345578877766543 369999
Q ss_pred ECCCCce--eeeeccceecCceeEEecc--CceecccccCCCeEEEEecCCCe--EEEEeCCCCceEEeeeeccCCCCCc
Q psy18018 525 DVKTGEF--STPLMSSFILNPFYFLIYS--QPLLCPHLQFNSRFVITSSDDGT--VKLWDVKTGEFIRNLVSLDSGGSGG 598 (635)
Q Consensus 525 d~~~~~~--~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~ 598 (635)
|+.++.. ...+.. +. ..+..++|++++.++++...|+. |.+||+.+|+.+..+. .+.+
T Consensus 317 d~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~-----~~~~ 380 (710)
T 2xdw_A 317 DFTDPEESKWKVLVP-----------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP-----LEVG 380 (710)
T ss_dssp ETTSCCGGGCEEEEC-----------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-----CCSS
T ss_pred eCCCCCcccceeccC-----------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC-----CCCc
Confidence 9987642 122211 22 25677888888899999988884 6667877888777763 4467
Q ss_pred eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
.+..+.++|++..|+....+..-.-.+|.+|+..
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 8999999999976664433332234588888754
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=7.3e-10 Score=102.99 Aligned_cols=264 Identities=10% Similarity=-0.012 Sum_probs=172.7
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcc---
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTK--- 415 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--- 415 (635)
..+..++++++|+.+++...++.|..|+.. ++.... ...+...+.+++++ +.++++...++.|..|+......
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 93 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYT 93 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEe
Confidence 345567788899877776668899999988 554332 22345678888886 45666655678898888752211
Q ss_pred ------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCC
Q psy18018 416 ------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSG 486 (635)
Q Consensus 416 ------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 486 (635)
......+.+++..+++...++.|..||. +++.... ...+...+.++.++ ++++++...++.|..||. ++
T Consensus 94 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 94 LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC
Confidence 1111234567777777667889999998 5554432 22344567777775 456666666789999998 66
Q ss_pred ceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018 487 QCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564 (635)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 564 (635)
+.... ... .....+..+++ +++++++...++.|.+||. +++... +... .....+.+++++++|++
T Consensus 172 ~~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---------~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 172 DITEF-KIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP---------TPNARPHAITAGAGIDL 238 (299)
T ss_dssp CEEEE-ECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS---------STTCCEEEEEECSTTCE
T ss_pred cEEEe-eCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC---------CCCCCceeEEECCCCCE
Confidence 55432 111 13345777888 4676666666789999998 665332 1110 12356788999999998
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
.++...++.|..||. +++ +..+.. ..+...+.++++ ++|++.++...++ ++.+|++.
T Consensus 239 ~v~~~~~~~i~~~d~-~g~-~~~~~~---~~~~~~~~~i~~-~~g~l~v~~~~~~-----l~~~~~~~ 295 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNI-IEEYPI---QIKSAEPHGICF-DGETIWFAMECDK-----IGKLTLIK 295 (299)
T ss_dssp EEEETTTTEEEEEET-TTE-EEEEEC---SSSSCCEEEEEE-CSSCEEEEETTTE-----EEEEEEC-
T ss_pred EEeccCCceEEEECC-CCc-eEEEeC---CCCCCccceEEe-cCCCEEEEecCCc-----EEEEEcCc
Confidence 777767889999998 454 333321 233467899999 9998877766444 66777654
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=1.9e-11 Score=111.80 Aligned_cols=234 Identities=10% Similarity=0.002 Sum_probs=142.4
Q ss_pred CCceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 343 VPDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 343 ~~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
.+..++++++++.++ +...++.|..|+..+.........+...+.+++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~----------------------------- 75 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD----------------------------- 75 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC-----------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC-----------------------------
Confidence 455677888998776 54678899999876544322212222334445543
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccc
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 499 (635)
++++.+++.. ++.|..||................+.++.++ ++++++...++.|.+|+..+......... ..
T Consensus 76 --~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~ 149 (270)
T 1rwi_B 76 --GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---GL 149 (270)
T ss_dssp --TTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---SC
T ss_pred --CCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---cC
Confidence 3333222222 5556666655433221111222456677764 56777767788999998665443322211 22
Q ss_pred ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 500 ~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
..+..+++ +++++++...++.|.+||............ ....+..++++++|.++++...++.|.+|
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-----------DITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-----------SCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-----------CCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 34556777 577777777788999999887654322111 12456789999999888888788999999
Q ss_pred eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
|.......... ..+...+.+++++++|+++++...++. |..++..
T Consensus 219 ~~~~~~~~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~----v~~~~~~ 263 (270)
T 1rwi_B 219 LAGSTTSTVLP-----FTGLNTPLAVAVDSDRTVYVADRGNDR----VVKLTSL 263 (270)
T ss_dssp CTTCSCCEECC-----CCSCSCEEEEEECTTCCEEEEEGGGTE----EEEECCC
T ss_pred cCCCCcceeec-----cCCCCCceeEEECCCCCEEEEECCCCE----EEEEcCC
Confidence 98765543211 123356899999999998888888887 5555544
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=4.8e-11 Score=124.89 Aligned_cols=196 Identities=11% Similarity=-0.005 Sum_probs=119.2
Q ss_pred eEEEEecCcEEEEecCCCe-------------EEEEEccCCc----eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEE
Q psy18018 346 LFGFQFDGVHVVSGSLDTS-------------IRVWEAESGN----LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVW 408 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~-------------i~v~~~~~~~----~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iw 408 (635)
.++|+|||+.|+.++.+.. |++|++.++. ++.....+...+..+.+
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~----------------- 234 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL----------------- 234 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE-----------------
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE-----------------
Confidence 4569999999998887665 8999988765 22222223333444443
Q ss_pred EccCCcceeEEEEEeeCCcEEEEEeCCC----cEEEEeCCCCceeeeeccCCccEE-EEEecCCEEEEEe---CCCcEEE
Q psy18018 409 DIVSGTKKLMFRICLFDGVHVVSGSLDT----SIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGN---ADSTVKV 480 (635)
Q Consensus 409 d~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~l~s~~---~dg~i~i 480 (635)
+|||++|+..+.++ .|++++..+++.. .+..+...+. .+..++++++... .++.|.+
T Consensus 235 --------------SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~ 299 (695)
T 2bkl_A 235 --------------SRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFE 299 (695)
T ss_dssp --------------CTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred --------------CCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEecCCcEEEEECCCCCCCEEEE
Confidence 46666666655444 5666665555433 3333433333 3334566444433 2578999
Q ss_pred EECCCCce--eEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC-CCceeeeeccceecCceeEEeccCceecc
Q psy18018 481 WDIVSGQC--LQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK-TGEFSTPLMSSFILNPFYFLIYSQPLLCP 556 (635)
Q Consensus 481 wd~~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 556 (635)
||+.+++. ...+... .....+..+++ ++.++++...|+..++|.+. +++....+.. .....+..+
T Consensus 300 ~d~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----------~~~~~v~~~ 368 (695)
T 2bkl_A 300 VDPAKPARASWKEIVPE-DSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQL----------PGVGAASNL 368 (695)
T ss_dssp EBTTBCSGGGCEEEECC-CSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCC----------SSSSEECCC
T ss_pred EeCCCCCccCCeEEecC-CCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecC----------CCCeEEEEe
Confidence 99987653 2333221 01445677777 56778888899988888665 3443333221 124567788
Q ss_pred cccCCCeEEEEe----cCCCeEEEEeCCCCce
Q psy18018 557 HLQFNSRFVITS----SDDGTVKLWDVKTGEF 584 (635)
Q Consensus 557 ~~s~~~~~l~~~----~~d~~v~iwd~~~~~~ 584 (635)
+++||++.++.. ...++|++||+.+++.
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 999999877733 3457899999998874
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=7e-11 Score=112.59 Aligned_cols=266 Identities=14% Similarity=0.048 Sum_probs=177.9
Q ss_pred ecCcEEEEecCC-----CeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccCC
Q psy18018 351 FDGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVSG 413 (635)
Q Consensus 351 ~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~ 413 (635)
++++++++.... +.|.++|..+++.+..+.....+ .++++ ++.++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666553 69999999999999888766555 78886 55565554 4678999999998
Q ss_pred cceeEEE----------------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec-CCEEEEEeC
Q psy18018 414 TKKLMFR----------------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNA 474 (635)
Q Consensus 414 ~~~~~~~----------------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~ 474 (635)
+...... .++|||++++++.. ++.|.++|+.+++.+.++..... ..+.++ ...+++.+.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence 8765543 37889999999874 57899999999999888764322 233443 467778888
Q ss_pred CCcEEEEECCCCceeEEec-CCCcccccE---EEEEecCCEEEEEeCCCcEEEEECCCCceee--eeccce-ecCceeEE
Q psy18018 475 DSTVKVWDIVSGQCLQTLS-GRNKHQSAV---TCLQFNSRFVITSSDDGTVKLWDVKTGEFST--PLMSSF-ILNPFYFL 547 (635)
Q Consensus 475 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v---~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~-~~~~~~~~ 547 (635)
||++.+.+..+++...... .......++ ..+..++..++..+..+.+.+.|........ ...... .......
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~- 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW- 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE-
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc-
Confidence 9999999986665543211 000011111 1223356666666778999999987654321 110000 0000000
Q ss_pred eccCceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018 548 IYSQPLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS 616 (635)
Q Consensus 548 ~~~~~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~ 616 (635)
.......++++||++.+.++.. ++.|.+.|+.+++.+..+. .....++++|+|||+ +|++..
T Consensus 317 -~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~------vg~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 317 -RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE------LGHEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp -EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEEECCSSSCEEEEEE
T ss_pred -ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE------CCCCcCeEEEccCCCEEEEEEc
Confidence 1122234689999887666532 3579999999999999884 233688999999999 888887
Q ss_pred -CCCeeEeEEEEEeeec
Q psy18018 617 -RNGTEETKLLVLDFDV 632 (635)
Q Consensus 617 -~dg~~~~~l~~~d~~~ 632 (635)
.++. |.++|...
T Consensus 390 ~~s~~----VsVID~~t 402 (426)
T 3c75_H 390 AGTQT----LHIYDAAT 402 (426)
T ss_dssp TTTTE----EEEEETTT
T ss_pred CCCCe----EEEEECCC
Confidence 4777 77777654
No 203
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.42 E-value=1.9e-10 Score=118.86 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=111.9
Q ss_pred EEEEecCcEEEEecCCC-------------------eEEEEEccCCceEEeeeC--CC-------cce--eEEEEeCC--
Q psy18018 347 FGFQFDGVHVVSGSLDT-------------------SIRVWEAESGNLRHTLMG--HQ-------SLT--SGMELRNN-- 394 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg-------------------~i~v~~~~~~~~~~~~~~--~~-------~~v--~~l~~~~~-- 394 (635)
.+++|+...++.++.++ .|..+|..+|+.+..++. |. ... ..+.+.+.
T Consensus 240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~ 319 (689)
T 1yiq_A 240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR 319 (689)
T ss_dssp EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE
Confidence 34556666666666554 388899999998877754 21 111 12223333
Q ss_pred -EEEEEeCCCcEEEEEccCCcceeEE------------------------------------------------EEEeeC
Q psy18018 395 -ILVSGNADSTVKVWDIVSGTKKLMF------------------------------------------------RICLFD 425 (635)
Q Consensus 395 -~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------------------~~~~~~ 425 (635)
.++.++.+|.+.++|..+++..... ..++|+
T Consensus 320 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~ 399 (689)
T 1yiq_A 320 KVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD 399 (689)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred EEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence 7888889999999999888765211 124555
Q ss_pred CcEEEEEeC---------------------------------------------CCcEEEEeCCCCceeeeeccCCccE-
Q psy18018 426 GVHVVSGSL---------------------------------------------DTSIRVWEAESGNLRHTLMGHQSLT- 459 (635)
Q Consensus 426 ~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~v- 459 (635)
...+++... +|.+..||+.+++.+.++..+....
T Consensus 400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 479 (689)
T 1yiq_A 400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG 479 (689)
T ss_dssp TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC
Confidence 566665422 3779999999999988887654322
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCccc-ccEEEEEecCC-EEEEE
Q psy18018 460 SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ-SAVTCLQFNSR-FVITS 515 (635)
Q Consensus 460 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~l~~~ 515 (635)
-.+...+.+++.++.||.++.||.++++.+.++....... .+++ ...+|+ |+++.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t-y~~~G~qyv~~~ 536 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT-YSVDGEQYVTFM 536 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEEEEEEE
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE-EEECCEEEEEEE
Confidence 2455578899999999999999999999999887633222 3333 345766 44444
No 204
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.41 E-value=6.6e-11 Score=123.86 Aligned_cols=266 Identities=13% Similarity=0.008 Sum_probs=166.3
Q ss_pred EEecCcEEEEecCCC-----eEEEEEccCCceEEeee------CCCcceeEEEEe--CCEEE-----EEeCCCcEEEEEc
Q psy18018 349 FQFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLM------GHQSLTSGMELR--NNILV-----SGNADSTVKVWDI 410 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~------~~~~~v~~l~~~--~~~l~-----s~~~dg~i~iwd~ 410 (635)
.+|+|.+++....++ .+...+...++....+. +|...+..++|+ ++.|+ .|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 458898887665533 34444444444333332 344568888887 55666 2333468999999
Q ss_pred cCCcce-e--------EEEEEeeCCcEEEEEeCCCc-------------EEEEeCCCCc----eeeeeccCCccEEEEEe
Q psy18018 411 VSGTKK-L--------MFRICLFDGVHVVSGSLDTS-------------IRVWEAESGN----LRHTLMGHQSLTSGMEL 464 (635)
Q Consensus 411 ~~~~~~-~--------~~~~~~~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~v~~~~~ 464 (635)
.+++.. . ....++|||+.|+.++.+.. |++|++.++. ++.....+...+.++.+
T Consensus 155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 987654 1 23358899999999998776 9999998876 33333345556666666
Q ss_pred --cCCEEEEEeCCC----cEEEEECCCCceeEEecCCCcccccEEEEE-ecCCEEEEEe---CCCcEEEEECCCCce--e
Q psy18018 465 --RNNILVSGNADS----TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRFVITSS---DDGTVKLWDVKTGEF--S 532 (635)
Q Consensus 465 --~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~---~d~~i~vwd~~~~~~--~ 532 (635)
++++++.++.++ .|.+|+..+++... +.. +...+.... .++.+++... .++.|.+||+.+++. .
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~---~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVK---GVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEE---CSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eec---CCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 567777766655 67777765554333 332 222233333 4666444443 257899999987652 1
Q ss_pred eeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeCCCCeE
Q psy18018 533 TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRASETKLV 611 (635)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 611 (635)
..+..+ .....+..++++ ++.++++...|+..+||.+. +++.+..+. ....+.+..++++||+..
T Consensus 311 ~~l~~~---------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~----~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 311 KEIVPE---------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ----LPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp EEEECC---------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC----CSSSSEECCCBSCTTCSE
T ss_pred eEEecC---------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec----CCCCeEEEEeecCCCCCE
Confidence 111111 013346677787 78899999999988888665 466555552 123567888999999987
Q ss_pred EEEccCCCeeEeEEEEEeeec
Q psy18018 612 CAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 612 l~~~~~dg~~~~~l~~~d~~~ 632 (635)
|+....+..-.-.+|.+|++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEcCCCCCCEEEEEECCC
Confidence 774444333334578887653
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=7e-12 Score=117.61 Aligned_cols=139 Identities=9% Similarity=0.017 Sum_probs=109.0
Q ss_pred CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceeee
Q psy18018 455 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTP 534 (635)
Q Consensus 455 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 534 (635)
+.. |..+++++++|+++ .++.|++||+.+......... +...+.++.+....+++++.||.|.+||++++....
T Consensus 87 lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~---~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 87 IPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTS---FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp CTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEE---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred CCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccce---eecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence 555 88999988899988 889999999987765555544 566788888855459999999999999999887532
Q ss_pred eccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce--EEeeeecc----CCCCCceEEEEEeCCC
Q psy18018 535 LMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF--IRNLVSLD----SGGSGGVVWRIRASET 608 (635)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~----~~~~~~~i~~l~~s~d 608 (635)
+...|+|++|||+| ++.|..||++++|+...++. .+.+...+ ..+|...|.++.|.++
T Consensus 161 --------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 161 --------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp --------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred --------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 24589999999999 67788999999999887775 44552211 0136789999999999
Q ss_pred CeEEEEc
Q psy18018 609 KLVCAVG 615 (635)
Q Consensus 609 ~~~l~~~ 615 (635)
+++|++-
T Consensus 225 ~~flv~y 231 (388)
T 1xip_A 225 QDFLAVF 231 (388)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999874
No 206
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.40 E-value=2.8e-10 Score=119.54 Aligned_cols=226 Identities=11% Similarity=0.038 Sum_probs=152.3
Q ss_pred ceEEEEecCcEEEEecCCC-----eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCc-------------
Q psy18018 345 DLFGFQFDGVHVVSGSLDT-----SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADST------------- 404 (635)
Q Consensus 345 ~~~~~s~~~~~l~~~~~dg-----~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~------------- 404 (635)
...+|||||++|+.+..++ .|++||+.+++.......+ ..+..++|+ ++.|+.++.++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 4567999999998765533 8999999998876543222 235678886 568888877765
Q ss_pred ---EEEEEccCCcce-------------eEEEEEeeCCcEEEEEeC-----CCcEEEEeCCC------Cc-eeeeeccCC
Q psy18018 405 ---VKVWDIVSGTKK-------------LMFRICLFDGVHVVSGSL-----DTSIRVWEAES------GN-LRHTLMGHQ 456 (635)
Q Consensus 405 ---i~iwd~~~~~~~-------------~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------~~-~~~~~~~~~ 456 (635)
|.+|++.++... .....++|||++|+..+. +..+++||+.+ +. ....+..+.
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~ 286 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence 999999876521 123357899999988765 67899999986 43 345555555
Q ss_pred ccEE-EEEecCCEEEEEeCC----CcEEEEECCCCce--eEEecCCCcccccEEEEEe--cCCEEEEEeCCCc--EEEEE
Q psy18018 457 SLTS-GMELRNNILVSGNAD----STVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT--VKLWD 525 (635)
Q Consensus 457 ~~v~-~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~--i~vwd 525 (635)
..+. .++.+++.++..+.+ +.|.+||+.++.. ...+..+. ....+..+++ ++.++++...|+. |.+|+
T Consensus 287 ~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 287 EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred CcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 4333 455678866665543 3699999987642 23443311 1125777777 3556777777874 66677
Q ss_pred CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe----cCCCeEEEEeCCCCc
Q psy18018 526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS----SDDGTVKLWDVKTGE 583 (635)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~v~iwd~~~~~ 583 (635)
+.+++....+.. +...+..++++|+++.++.. ...+++..||+.+++
T Consensus 366 ~~~g~~~~~l~~-----------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 366 LATGALLKIFPL-----------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTCCEEEEECC-----------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCCEEEecCC-----------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 767765544432 24567788899998766533 234789999999887
No 207
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.39 E-value=8e-11 Score=111.30 Aligned_cols=305 Identities=13% Similarity=0.098 Sum_probs=189.9
Q ss_pred CCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEe
Q psy18018 170 DTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGW 248 (635)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w 248 (635)
.+++.+.+...+...........++.+++++.++.|..|| .+++.+.....+...+.++..+ ...+..++.+ +..+
T Consensus 7 ~~g~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~ 83 (330)
T 3hxj_A 7 NDCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAI 83 (330)
T ss_dssp -----CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEE
T ss_pred CCceEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEE
Confidence 3444444443333333334444577888999899999999 8888876655444455666664 5566666655 7777
Q ss_pred cccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhh
Q psy18018 249 SNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328 (635)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (635)
|...... |...
T Consensus 84 d~~g~~~---------------------------------------------------------------------~~~~ 94 (330)
T 3hxj_A 84 NPDGTEK---------------------------------------------------------------------WRFD 94 (330)
T ss_dssp CCCGGGG---------------------------------------------------------------------GGSC
T ss_pred CCCCcEE---------------------------------------------------------------------EEEE
Confidence 7422110 0000
Q ss_pred hhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEE
Q psy18018 329 CLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKV 407 (635)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~i 407 (635)
..........+. +..+.+++.++.+..+|.. ++.......+...+.++... +..+..++.++.+..
T Consensus 95 ----------~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~ 161 (330)
T 3hxj_A 95 ----------TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYA 161 (330)
T ss_dssp ----------C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred ----------CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence 000000111122 5567788888999999988 87777776666666666666 567888888899999
Q ss_pred EEccCCcceeEEEE---------EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCc
Q psy18018 408 WDIVSGTKKLMFRI---------CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADST 477 (635)
Q Consensus 408 wd~~~~~~~~~~~~---------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~ 477 (635)
+|.. ++....... ...++. +..++ +.+..+| .+++...........+.++..+++ .+..++.++.
T Consensus 162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~g 236 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGH 236 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTE
T ss_pred ECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCe
Confidence 9988 554433321 223454 44555 8899999 777777777666566777777654 7777888888
Q ss_pred EEEEECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecc
Q psy18018 478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCP 556 (635)
Q Consensus 478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 556 (635)
+..+|. +++.+..+.. ....+..+..+ +..|..++.+|.|..+|. +++....... ....+.++
T Consensus 237 l~~~~~-~g~~~~~~~~---~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~-----------~~~~~~~~ 300 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKT---GKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET-----------GSWIIATP 300 (330)
T ss_dssp EEEECT-TSCEEEEEEC---SSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC-----------SSCCCSCC
T ss_pred EEEECC-CCCEeEEeeC---CCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc-----------CCccccce
Confidence 999984 5666665554 22222334444 667888888888999995 6665544332 13456677
Q ss_pred cccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 557 HLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 557 ~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
...+++++.+ ++.+|.+++...+.
T Consensus 301 ~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 301 VIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp EECTTCCEEE-ECTTSCEEEEEC--
T ss_pred EEcCCCEEEE-EcCCCeEEEEeccc
Confidence 7777887554 88899999887654
No 208
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=6e-07 Score=95.32 Aligned_cols=464 Identities=9% Similarity=0.007 Sum_probs=257.1
Q ss_pred EEEEEEc--CCEEEEeeCCCcEEEEECCCCcEE-----------------------------EEEeeCCCcEEEEeCCCC
Q psy18018 84 ITCLQFS--GSRIVSGSDDNTLKVWSATTGKCL-----------------------------LVSGSRDATLRVWHIESG 132 (635)
Q Consensus 84 i~~~~~s--~~~l~s~~~d~~v~vWd~~~~~~l-----------------------------l~~~~~dg~i~vwd~~~~ 132 (635)
|.++..+ |+.|-.++.++-+..||..+++.. +..++.++-+..+|.+++
T Consensus 68 I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~ 147 (781)
T 3v9f_A 68 LNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATG 147 (781)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTT
T ss_pred cceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECCCC
Confidence 4888887 442666777745778876643321 222332445677777666
Q ss_pred eEEEEee-----CCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEE
Q psy18018 133 ECLHVLV-----GHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSG 199 (635)
Q Consensus 133 ~~~~~l~-----~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~ 199 (635)
+...... -....|.++.. ....|..++.++-+..||..+++...-... ....+..+.....+.|.++
T Consensus 148 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig 227 (781)
T 3v9f_A 148 KFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG 227 (781)
T ss_dssp EEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE
T ss_pred eEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE
Confidence 5433211 12345788877 366777777776688899887653321110 1122333444456677777
Q ss_pred eCCCcEEEEECCCCeEEEEEe-------CCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceee
Q psy18018 200 SDDNTLKVWSATTGKCLRTLI-------GHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRH 271 (635)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 271 (635)
+.+ -+..||..+++...... .....|.++..+ ...+..|+..+-|..++..+........ .....
T Consensus 228 t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~------~~f~~ 300 (781)
T 3v9f_A 228 TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQ------IRFEF 300 (781)
T ss_dssp ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------------CEE
T ss_pred eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeec------ccccc
Confidence 776 68899987765543221 124568888875 5567777775667778765532210000 00000
Q ss_pred eeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEe
Q psy18018 272 MMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQF 351 (635)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 351 (635)
+. . ..............+....
T Consensus 301 -------------------------~~-~--------------------------------~~~~~~l~~~~v~~i~~D~ 322 (781)
T 3v9f_A 301 -------------------------IR-E--------------------------------GDNNYSLSNASARYIFQDS 322 (781)
T ss_dssp -------------------------EC-B--------------------------------CSSTTSBSSSCEEEEEECS
T ss_pred -------------------------cc-C--------------------------------CCCCCCCCCCeEEEEEEeC
Confidence 00 0 0000000111122222333
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeee---------CCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCccee----
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLM---------GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKL---- 417 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~---------~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~---- 417 (635)
+|. |.+|+.++-|..++..+........ .....|.++..+ ...|..|+.++.|..++..++....
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 401 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKEN 401 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC---
T ss_pred CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCC
Confidence 444 6667767778888877554332111 123468888887 4577788877778888876432211
Q ss_pred -------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeec--cCCccEEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q psy18018 418 -------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLM--GHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGQ 487 (635)
Q Consensus 418 -------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 487 (635)
...+.......|..|+.++-+..++..+++...... .....|.++..+ ...+..|+. +-+..+|..+++
T Consensus 402 ~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 402 RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK 480 (781)
T ss_dssp --CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence 112222223456667777778899987765433221 134578888876 346666666 558999988765
Q ss_pred eeEEecCC--CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeE
Q psy18018 488 CLQTLSGR--NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564 (635)
Q Consensus 488 ~~~~~~~~--~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 564 (635)
........ ......|.++..+ ...|..|+.++-+..||..+++... +... .. .....|.++...++|++
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~---~~----l~~~~i~~i~~d~~g~l 552 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQY---EG----FCSNTINQIYRSSKGQM 552 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTT---TT----CSCSCEEEEEECTTSCE
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCC---CC----CCCCeeEEEEECCCCCE
Confidence 43332211 1124568888884 3345556654448888887664332 2110 00 02446888888889987
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
.+... +|.+..||..+++.. .+.. ...-....|.++...++|.+.++ +.+| |..+|++
T Consensus 553 Wi~T~-~Glv~~~d~~~~~~~-~~~~-~~gl~~~~i~~i~~d~~g~lW~~-t~~G-----l~~~~~~ 610 (781)
T 3v9f_A 553 WLATG-EGLVCFPSARNFDYQ-VFQR-KEGLPNTHIRAISEDKNGNIWAS-TNTG-----ISCYITS 610 (781)
T ss_dssp EEEET-TEEEEESCTTTCCCE-EECG-GGTCSCCCCCEEEECSSSCEEEE-CSSC-----EEEEETT
T ss_pred EEEEC-CCceEEECCCCCcEE-Eccc-cCCCCCceEEEEEECCCCCEEEE-cCCc-----eEEEECC
Confidence 66544 776588998877632 3321 11223456889999999986665 4566 4555543
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=5.2e-10 Score=106.59 Aligned_cols=230 Identities=16% Similarity=0.097 Sum_probs=151.4
Q ss_pred EEEEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCC-------CcceeEEEEe--CCEEEEEeC--CCcE
Q psy18018 347 FGFQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGH-------QSLTSGMELR--NNILVSGNA--DSTV 405 (635)
Q Consensus 347 ~~~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~-------~~~v~~l~~~--~~~l~s~~~--dg~i 405 (635)
++++||+++++++. .++.|.++|..+++.+..+.-. ......+.++ +++++++.. ++.|
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V 202 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV 202 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence 34777777776665 3578999999998888776432 1223455665 677777763 5789
Q ss_pred EEEEccCCcceeEEEE-----EeeC-CcEEEEEeCCCcEEEEeCCCCceeee----eccCCccE---EEEEecCCEEEEE
Q psy18018 406 KVWDIVSGTKKLMFRI-----CLFD-GVHVVSGSLDTSIRVWEAESGNLRHT----LMGHQSLT---SGMELRNNILVSG 472 (635)
Q Consensus 406 ~iwd~~~~~~~~~~~~-----~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~v---~~~~~~~~~l~s~ 472 (635)
.+.|+.+.+....+.. ..|+ ...+++.+.||.+.+.+..+++.... +.....++ ..+..+++.++..
T Consensus 203 sVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~ 282 (426)
T 3c75_H 203 GVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP 282 (426)
T ss_dssp EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred EEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence 9999999877665543 2333 35667778899998888866665532 11111111 1234456666666
Q ss_pred eCCCcEEEEECCCCcee--EEecCC---------CcccccEEEEEecCCEEEEEeC----------CCcEEEEECCCCce
Q psy18018 473 NADSTVKVWDIVSGQCL--QTLSGR---------NKHQSAVTCLQFNSRFVITSSD----------DGTVKLWDVKTGEF 531 (635)
Q Consensus 473 ~~dg~i~iwd~~~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~l~~~~~----------d~~i~vwd~~~~~~ 531 (635)
+..+.+.+.|....... ..+... .........+..+++.+++... ++.|.+.|..+.+.
T Consensus 283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 77889999998654321 111100 0011111245556676666532 35799999999998
Q ss_pred eeeeccceecCceeEEeccCceecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEee
Q psy18018 532 STPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~ 588 (635)
+..+.. ......++|+||++ +++++. .++.|.|+|+.+++.++++
T Consensus 363 v~~I~v------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 363 INKIEL------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEE------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEC------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 887754 22467889999999 888877 5899999999999999887
No 210
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=1e-06 Score=93.47 Aligned_cols=449 Identities=11% Similarity=0.035 Sum_probs=245.0
Q ss_pred EEEEEcC---CEEEEeeCCCcEEEEECCCCcE---------------E----------EEEeeCCCcEEEEeCCCCeEEE
Q psy18018 85 TCLQFSG---SRIVSGSDDNTLKVWSATTGKC---------------L----------LVSGSRDATLRVWHIESGECLH 136 (635)
Q Consensus 85 ~~~~~s~---~~l~s~~~d~~v~vWd~~~~~~---------------l----------l~~~~~dg~i~vwd~~~~~~~~ 136 (635)
.++.... ..|-.++.++-|..+|.++++. + +..|+.++-+..+|..+++...
T Consensus 118 ~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~ 197 (781)
T 3v9f_A 118 THITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKH 197 (781)
T ss_dssp EEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE
T ss_pred eEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEe
Confidence 6776642 4555565444566677543321 0 4445556568888887765433
Q ss_pred EeeC-------CCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccc-------cceeEEeeeccCCCEEEEEeC
Q psy18018 137 VLVG-------HLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQ-------ETEVELSHGYALRSRIVSGSD 201 (635)
Q Consensus 137 ~l~~-------h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~ 201 (635)
.... ....|.++.. ....|..++.+ -+.+||..+++....... ....+.......++.|.+|+.
T Consensus 198 ~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~ 276 (781)
T 3v9f_A 198 FVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE 276 (781)
T ss_dssp ECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES
T ss_pred eecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC
Confidence 2111 1356888887 33345555555 588899877654322111 122344444456778888888
Q ss_pred CCcEEEEECCCCeEEEEEe--------------CCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCc
Q psy18018 202 DNTLKVWSATTGKCLRTLI--------------GHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEP 266 (635)
Q Consensus 202 dg~i~vwd~~~~~~~~~~~--------------~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 266 (635)
.+-|.++|..+++...... .....|.++..+ ...|..|+.++-|..++............
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~----- 351 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYS----- 351 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC-------
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccC-----
Confidence 6778899987765432111 134568888886 44677777777788887654321100000
Q ss_pred cceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCce
Q psy18018 267 TQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (635)
+. ...........+
T Consensus 352 ----------------------------------~~--------------------------------~~~~~~l~~~~v 365 (781)
T 3v9f_A 352 ----------------------------------PT--------------------------------QMNESSLSNKVV 365 (781)
T ss_dssp --------------------------------------------------------------------CCCSSCCSSSCE
T ss_pred ----------------------------------cc--------------------------------ccccCCCCCcce
Confidence 00 000000011123
Q ss_pred EEEEecC-cEEEEecCCCeEEEEEccCCceEEee---eCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcce-----
Q psy18018 347 FGFQFDG-VHVVSGSLDTSIRVWEAESGNLRHTL---MGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKK----- 416 (635)
Q Consensus 347 ~~~s~~~-~~l~~~~~dg~i~v~~~~~~~~~~~~---~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~----- 416 (635)
.++..+. ..|..|+.++-|..|+..++...... ......|.++..+ ...|..++.++.+..++..+++..
T Consensus 366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE 445 (781)
T ss_dssp EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence 3333332 34667776666888987654332211 1234578888886 556777887777888887654321
Q ss_pred -----eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccC-----CccEEEEEecC-CEEEEEeCCCcEEEEECCC
Q psy18018 417 -----LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGH-----QSLTSGMELRN-NILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 417 -----~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~ 485 (635)
....+.......|..|+. +-+..+|..+++........ ...|.++..+. ..+..|+.++-+..||..+
T Consensus 446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 112222222345666666 55888998876654332222 35688887753 3555666644588899876
Q ss_pred CceeEEecCC-CcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 486 GQCLQTLSGR-NKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 486 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
++.. .+... ......|.++..+ ...|..++.+|-+..||..+++... +.... . .....|.++...++|+
T Consensus 525 ~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~--g-----l~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 525 QLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKE--G-----LPNTHIRAISEDKNGN 595 (781)
T ss_dssp CEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGG--T-----CSCCCCCEEEECSSSC
T ss_pred CeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccC--C-----CCCceEEEEEECCCCC
Confidence 5433 33221 1124568888884 3345555556754888887765322 21100 0 0123567788888888
Q ss_pred EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCc-eEEEEEeCCCCeEEEEccCCC
Q psy18018 564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGG-VVWRIRASETKLVCAVGSRNG 619 (635)
Q Consensus 564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~l~~~~~dg 619 (635)
+.++ +.+| |..+|.++++. ..+...+.-.... ...++...++|++++ |+.+|
T Consensus 596 lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G 648 (781)
T 3v9f_A 596 IWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING 648 (781)
T ss_dssp EEEE-CSSC-EEEEETTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred EEEE-cCCc-eEEEECCCCce-EEecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence 7665 4455 77888876553 3443221111111 235677788888655 66677
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.34 E-value=2.5e-08 Score=92.51 Aligned_cols=188 Identities=10% Similarity=0.007 Sum_probs=106.0
Q ss_pred EEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 425 (635)
+++.+++..+++...++.|..|+. +++.... ...+...+..++++ ++
T Consensus 104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-------------------------------~~ 151 (299)
T 2z2n_A 104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-------------------------------SD 151 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-------------------------------TT
T ss_pred eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-------------------------------CC
Confidence 345566666666656677777776 4443321 11222334444443 23
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018 426 GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV 502 (635)
Q Consensus 426 ~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 502 (635)
+...++...++.|..||. +++.... +..+...+.++.++ +++.++...++.|..||. +++... +... .....+
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~ 227 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP-TPNARP 227 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC-CCCCCc
Confidence 333333333455666666 4443322 22233456677774 556666666889999998 665433 3221 134567
Q ss_pred EEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018 503 TCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580 (635)
Q Consensus 503 ~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~ 580 (635)
.++++ +++++++...++.|..||. +++. ..+... .....+.++++ +++++.++.. .+.+..++.+
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~---------~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ---------IKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS---------SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred eeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC---------CCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 78888 4666666557789999998 4432 222110 12346788888 8888877665 5667778877
Q ss_pred CCc
Q psy18018 581 TGE 583 (635)
Q Consensus 581 ~~~ 583 (635)
+++
T Consensus 295 ~~~ 297 (299)
T 2z2n_A 295 KDN 297 (299)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=9.6e-09 Score=95.40 Aligned_cols=262 Identities=11% Similarity=0.018 Sum_probs=170.3
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE-eeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCccee-
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKL- 417 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~- 417 (635)
..+..+++.++|+..++...++.|..|+.. ++... .+..+...+.+++++ +.+.++...++.|..+|.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 344567778889888877778999999987 55443 222334578888886 4455555557889888876 33211
Q ss_pred ---------EEEEEeeCCcEEEEEeCCCcEEEEeCCCCceee-eeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCC
Q psy18018 418 ---------MFRICLFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 418 ---------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 485 (635)
....+.++++.+++...++.|..++.. ++... .+......+.++.++ +++.++...++.|..+|. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 112245677777766668889999987 55542 233334567777774 566666666788999998 5
Q ss_pred CceeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCe
Q psy18018 486 GQCLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR 563 (635)
Q Consensus 486 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 563 (635)
++... +... .....+..++++ ++++++....+.|.+|+. +++....... .....+.+++++++|+
T Consensus 176 g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~----------~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 176 GKLEE-YPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP----------TPNARPHAITAGKNSE 242 (300)
T ss_dssp CCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS----------STTCCEEEEEECSTTC
T ss_pred CcEEE-eeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC----------CCCCCceEEEECCCCC
Confidence 55443 3211 133457778884 666666666778999998 4543322111 1234578899999999
Q ss_pred EEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 564 FVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 564 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+.++...++.|..||. +++.. .+.. ......+.+++++++|++.++.. + . |+.+|++
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~-~-~----i~~~~p~ 299 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQ-EYQL---QTENAEPHGITFGKDGSVWFALK-C-K----IGKLNLN 299 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEE-EEEC---CSTTCCCCCEEECTTSCEEEECS-S-E----EEEEEEC
T ss_pred EEEeccCCCeEEEECC-CCcEE-EEEC---CccCCccceeEeCCCCCEEEEcc-C-c----eEEeCCC
Confidence 8877777789999998 45543 2211 22345678999999999777665 4 4 7777764
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=8.4e-10 Score=103.41 Aligned_cols=239 Identities=9% Similarity=0.088 Sum_probs=139.6
Q ss_pred CCceEEEEecCcEEEE-------ecCCCeEEEEEccCCceEEeee----CCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018 343 VPDLFGFQFDGVHVVS-------GSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRNNILVSGNADSTVKVWDIV 411 (635)
Q Consensus 343 ~~~~~~~s~~~~~l~~-------~~~dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~ 411 (635)
.+..+++++++..+++ +..++.|..|+..+++...... ++...+.+++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~------------------- 79 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD------------------- 79 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-------------------
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-------------------
Confidence 3456778888887777 6778899999987776543221 122344444443
Q ss_pred CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeee-ecc----CCccEEEEEec--CCEEEEEeCC---------
Q psy18018 412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMG----HQSLTSGMELR--NNILVSGNAD--------- 475 (635)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~----~~~~v~~~~~~--~~~l~s~~~d--------- 475 (635)
+++..+..++..+.|.+||.. ++.... ... ....+.++.++ ++++++...+
T Consensus 80 ------------~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 80 ------------RDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp ------------SSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred ------------cCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 331122223333356666665 443322 111 11235566664 5566665544
Q ss_pred ------CcEEEEECCCCceeEEecCCCcccccEEEEEec------CCEEEEE-eCCCcEEEEECC-CCceeeeeccceec
Q psy18018 476 ------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN------SRFVITS-SDDGTVKLWDVK-TGEFSTPLMSSFIL 541 (635)
Q Consensus 476 ------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~-~~d~~i~vwd~~-~~~~~~~~~~~~~~ 541 (635)
+.|..|+.. ++...... +......++++ ++.++.+ ..++.|.+||.. +++........ ..
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~----~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~ 220 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HI 220 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-EC
T ss_pred cccCCCCeEEEECCC-CCEEEecc----CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-EC
Confidence 567777765 54433222 22233445544 5455444 567899999986 34321110000 00
Q ss_pred CceeEEecc-CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc-cCCC
Q psy18018 542 NPFYFLIYS-QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG-SRNG 619 (635)
Q Consensus 542 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~-~~dg 619 (635)
..+. .....++++++|+++++...++.|.+||..+++.+..+. .+...+.+++|+|||+.|.++ ..++
T Consensus 221 -----~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 221 -----PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-----CPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp -----CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-----CSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred -----CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-----CCCCCceeEEECCCCCEEEEEeCCCC
Confidence 0011 346778999999998888788899999998787666552 344678999999999955544 4455
Q ss_pred eeEeEEEEEeeecC
Q psy18018 620 TEETKLLVLDFDVD 633 (635)
Q Consensus 620 ~~~~~l~~~d~~~~ 633 (635)
. |+.+|++.+
T Consensus 291 ~----l~~~~~~~~ 300 (314)
T 1pjx_A 291 A----VWKFEWQRN 300 (314)
T ss_dssp E----EEEEECSSC
T ss_pred e----EEEEeCCCC
Confidence 5 788887654
No 214
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=5.9e-10 Score=103.34 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=141.2
Q ss_pred CCCCCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--
Q psy18018 14 PIKDPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS-- 90 (635)
Q Consensus 14 ~~~~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s-- 90 (635)
+..+...+..+.... .+++|+ |+|+ +++++...+ .+..||..++ ...+..+...+ .+++++
T Consensus 16 ~~~~~~~l~~~~~~~-eg~~~d----~~g~~l~~~~~~~~--------~i~~~~~~~~--~~~~~~~~~~~-~~l~~~~d 79 (296)
T 3e5z_A 16 AGAEARRLADGFTWT-EGPVYV----PARSAVIFSDVRQN--------RTWAWSDDGQ--LSPEMHPSHHQ-NGHCLNKQ 79 (296)
T ss_dssp TTCCCEEEECCCSSE-EEEEEE----GGGTEEEEEEGGGT--------EEEEEETTSC--EEEEESSCSSE-EEEEECTT
T ss_pred CCCcEEEEecCCccc-cCCeEe----CCCCEEEEEeCCCC--------EEEEEECCCC--eEEEECCCCCc-ceeeECCC
Confidence 344456777777777 899999 8998 666655433 3445998876 66777777766 899998
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEE-------------------------EEE----ee-------------CCCcEEEEe
Q psy18018 91 GSRIVSGSDDNTLKVWSATTGKCL-------------------------LVS----GS-------------RDATLRVWH 128 (635)
Q Consensus 91 ~~~l~s~~~d~~v~vWd~~~~~~l-------------------------l~~----~~-------------~dg~i~vwd 128 (635)
|+++++...++.|.+||..+|+.. +++ |+ ..+.|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 888777777899999999777643 222 11 022344444
Q ss_pred CCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCC-Cccc---eeeccccceeEEeeeccCCCEEEEEeCC
Q psy18018 129 IESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPD-TEEC---LHAELQETEVELSHGYALRSRIVSGSDD 202 (635)
Q Consensus 129 ~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d 202 (635)
.. ++ ...+..+......++| +++.|++.+.++.|.+|++. +++. ...+.........+.+.+++.++++. +
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~ 236 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-G 236 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-T
T ss_pred CC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-C
Confidence 33 33 3344456667788999 78888888888999999987 4443 11121111112233344445566666 8
Q ss_pred CcEEEEECCCCeEEEEEeCCCCCeEEEEee---CCEEEEeeCceeEE
Q psy18018 203 NTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GNIIISGSTDRTLK 246 (635)
Q Consensus 203 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~ 246 (635)
+.|.+||.. ++.+..+..+.. +.+++|. ++.|++++.++..+
T Consensus 237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 899999986 888888887777 8888883 45788888775433
No 215
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.31 E-value=2.6e-10 Score=107.75 Aligned_cols=274 Identities=11% Similarity=0.055 Sum_probs=168.2
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCcceEEEEe-cCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE
Q psy18018 121 DATLRVWHIESGECLHVLVGHLAAVRCVQY-DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG 199 (635)
Q Consensus 121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (635)
++.|..|| .+++.......+...+.++.. .+..|..++.+ +..+|. +++.+................ ++.++++
T Consensus 39 ~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~ 113 (330)
T 3hxj_A 39 NKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVT 113 (330)
T ss_dssp TTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEE
T ss_pred CCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEE
Confidence 33444444 444444433334445566666 35667776665 888886 666555444333222112222 7889999
Q ss_pred eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee-CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeecc
Q psy18018 200 SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA-GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEP 278 (635)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (635)
+.++.+..+|.. ++.......+...+.++..+ ...++.++.++.+..+|.. +.......
T Consensus 114 t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~------------------ 173 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK------------------ 173 (330)
T ss_dssp CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE------------------
T ss_pred ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe------------------
Confidence 999999999988 88777776665556666665 5667778888999999876 32111000
Q ss_pred ccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEE
Q psy18018 279 QFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVS 358 (635)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 358 (635)
........+.+.+++. +.+
T Consensus 174 ------------------------------------------------------------~~~~~~~~~~~d~~g~-l~v 192 (330)
T 3hxj_A 174 ------------------------------------------------------------TNDAITSAASIGKDGT-IYF 192 (330)
T ss_dssp ------------------------------------------------------------CSSCCCSCCEECTTCC-EEE
T ss_pred ------------------------------------------------------------cCCCceeeeEEcCCCE-EEE
Confidence 0000111122334555 444
Q ss_pred ecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEE--------EeeCCcEE
Q psy18018 359 GSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVHV 429 (635)
Q Consensus 359 ~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~l 429 (635)
++ +.+..+| .+++...........+.++..+++ .+..++.++.+..++.. ++....... ....+..|
T Consensus 193 ~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~~~~~~~~~~~~~~~~~~~~g~l 268 (330)
T 3hxj_A 193 GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GTEKWRFKTGKRIESSPVIGNTDTI 268 (330)
T ss_dssp ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CCEeEEeeCCCCccccceEcCCCeE
Confidence 55 7789999 777777777666667778888744 77888888888888643 332222211 11225567
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018 430 VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 430 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~ 485 (635)
..++.++.+..+|. +++....+......+.++.. .+..+..++.+|.+++...+.
T Consensus 269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 78888889999996 67777666655555666666 455677899999999887654
No 216
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.28 E-value=1.4e-09 Score=99.25 Aligned_cols=195 Identities=11% Similarity=0.052 Sum_probs=119.6
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
+..++++++++.+++.. ++.|.+|+................+.+++++
T Consensus 69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~------------------------------- 116 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVD------------------------------- 116 (270)
T ss_dssp CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEEC-------------------------------
T ss_pred cceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEEC-------------------------------
Confidence 34567888888666655 8899999987554332211222344555554
Q ss_pred eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA 501 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 501 (635)
++++.+++...++.|.+|+..+...............++.+ +++++++...++.|.+||............ ....
T Consensus 117 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~~~~ 193 (270)
T 1rwi_B 117 TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---DITA 193 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---SCCS
T ss_pred CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---CCCC
Confidence 33333333334455666654433322211222223445555 466777777788999999887654433222 2356
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 502 VTCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 502 v~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
+..++++ +.++++...++.|.+|+........ ... .+...+.+++++|+|+++++...++.|+++++
T Consensus 194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~----------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF----------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC----------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc----------CCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 7788884 6666666678899999987654322 110 11245788999999999999899999999998
Q ss_pred CCCce
Q psy18018 580 KTGEF 584 (635)
Q Consensus 580 ~~~~~ 584 (635)
...+.
T Consensus 263 ~~~~~ 267 (270)
T 1rwi_B 263 LEHHH 267 (270)
T ss_dssp CGGGS
T ss_pred CCccc
Confidence 76653
No 217
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.28 E-value=2.9e-09 Score=100.61 Aligned_cols=184 Identities=10% Similarity=-0.004 Sum_probs=115.3
Q ss_pred EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCEEEEeeCCCcEEEEE
Q psy18018 30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107 (635)
Q Consensus 30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~l~s~~~d~~v~vWd 107 (635)
.+++|+ |++..+++...++.+. .| .++....+.++...+ .+++|+ |++++++..++.|.+||
T Consensus 9 ~~~~~~----~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~~~~~~~i~~~d 72 (333)
T 2dg1_A 9 PTLFYS----GKSNSAVPIISESELQ--------TI---TAEPWLEISKKGLQL-EGLNFDRQGQLFLLDVFEGNIFKIN 72 (333)
T ss_dssp CBCCSC----GGGGCSSCCCCGGGSC--------EE---ECEEEEEEESSCCCE-EEEEECTTSCEEEEETTTCEEEEEC
T ss_pred ceeeec----CCccceeEEeecccCc--------cc---ccceeEEEeccCccc-cCcEECCCCCEEEEECCCCEEEEEe
Confidence 788999 8888887775544333 36 334556677777767 899998 77666777777777777
Q ss_pred CCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCC----CeEEEEeCCCccceeecc--
Q psy18018 108 ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYD----YMVKIWNPDTEECLHAEL-- 179 (635)
Q Consensus 108 ~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~-- 179 (635)
..+++ .......+...+.++++ +++++++...+ +.|.+||.++++......
T Consensus 73 ~~~~~---------------------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 131 (333)
T 2dg1_A 73 PETKE---------------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL 131 (333)
T ss_dssp TTTCC---------------------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS
T ss_pred CCCCc---------------------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC
Confidence 66443 22222245677999999 67777777666 689999998876542221
Q ss_pred ccceeEEeeeccCCCEEEEEeC-------CCcEEEEECCCCeEEEEEeCCCCCeEEEEee--CCEE-EEeeCceeEEEec
Q psy18018 180 QETEVELSHGYALRSRIVSGSD-------DNTLKVWSATTGKCLRTLIGHTGGVWSSQMA--GNII-ISGSTDRTLKGWS 249 (635)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~~w~ 249 (635)
..........+.+++.++.++. .+.|..+|..+++... +..+...+..++++ ++.+ ++.+.++.|.+|+
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 1122233333333444555544 2556666665554433 32334457788885 5555 4555678999998
Q ss_pred cc
Q psy18018 250 NA 251 (635)
Q Consensus 250 ~~ 251 (635)
..
T Consensus 211 ~~ 212 (333)
T 2dg1_A 211 LE 212 (333)
T ss_dssp EC
T ss_pred ec
Confidence 74
No 218
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.27 E-value=4.6e-09 Score=110.70 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=160.6
Q ss_pred EEecCcEEEEecCCCe---EEEEEc--c---CCceEEee------eCCCcceeEEEEe--CCEEEEEeCC-C----cEEE
Q psy18018 349 FQFDGVHVVSGSLDTS---IRVWEA--E---SGNLRHTL------MGHQSLTSGMELR--NNILVSGNAD-S----TVKV 407 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~---i~v~~~--~---~~~~~~~~------~~~~~~v~~l~~~--~~~l~s~~~d-g----~i~i 407 (635)
.+|+|++++....++. -.+|.. . .++....+ .+|...+..++|+ ++.|+.+..+ | .|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4589998876554332 444543 3 33332221 2233367778887 5666665443 3 5999
Q ss_pred EEccCCcceeEE--------EEEeeCCcEEEEEeCCCc--------------EEEEeCCCCce----eeeeccCCccEEE
Q psy18018 408 WDIVSGTKKLMF--------RICLFDGVHVVSGSLDTS--------------IRVWEAESGNL----RHTLMGHQSLTSG 461 (635)
Q Consensus 408 wd~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~--------------i~~~d~~~~~~----~~~~~~~~~~v~~ 461 (635)
||+.+++..... ..++|| +.|+.+..++. |++|++.++.. +.....+...+..
T Consensus 194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999988754321 137789 99988876654 88999987652 2222233334566
Q ss_pred EEe--cCCEEEEEeCCC-----cEEEEECCCC--ceeEEecCCCcccccEEEEEecCCEEEEEeCC----CcEEEEECCC
Q psy18018 462 MEL--RNNILVSGNADS-----TVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD----GTVKLWDVKT 528 (635)
Q Consensus 462 ~~~--~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----~~i~vwd~~~ 528 (635)
+.+ ++++++..+.++ .|++||+.++ +....+... .......+..+++.|+..+.+ +.|.+||+.+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 655 567777766543 7999999876 313444431 222233344578888877754 4599999987
Q ss_pred Cc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC-CCceEEeeeeccCCCCCceEEEEEeC
Q psy18018 529 GE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK-TGEFIRNLVSLDSGGSGGVVWRIRAS 606 (635)
Q Consensus 529 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~s 606 (635)
+. ....+..+ +...+..++++ ++.++++...|+..+||.+. +++.+..+. .+..+.+..+.++
T Consensus 351 ~~~~~~~l~~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~----~~~~~~v~~~~~s 415 (741)
T 1yr2_A 351 STPRFDTVVPE----------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS----LPGIGSASGLSGR 415 (741)
T ss_dssp SSCEEEEEECC----------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB----CSSSCEEEEEECC
T ss_pred CccccEEEecC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc----CCCCeEEEEeecC
Confidence 52 22222211 22335566676 67888889999987777654 466555552 1235678999999
Q ss_pred CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 607 ETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 607 ~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
||+..|+....+..-.-.+|.+|++
T Consensus 416 ~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 416 PGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp BTCSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECC
Confidence 9998666443333333458888764
No 219
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.26 E-value=6.7e-10 Score=117.08 Aligned_cols=226 Identities=13% Similarity=0.044 Sum_probs=147.6
Q ss_pred ceEEEEecCcEEEEecCC-----CeEEEEEccCCceEEeeeCCCcceeEEEEeC-CEEEEEeCCCc--------------
Q psy18018 345 DLFGFQFDGVHVVSGSLD-----TSIRVWEAESGNLRHTLMGHQSLTSGMELRN-NILVSGNADST-------------- 404 (635)
Q Consensus 345 ~~~~~s~~~~~l~~~~~d-----g~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~~~dg~-------------- 404 (635)
...+|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|++ +.|+.+..++.
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence 346799999999876543 46999999999876431 1222235677764 56776665543
Q ss_pred EEEEEccCCcce-------------eEEEEEeeCCcEEEEEeCCC-----cEEEEeCCCC--ceeeeeccCCc-cEEEEE
Q psy18018 405 VKVWDIVSGTKK-------------LMFRICLFDGVHVVSGSLDT-----SIRVWEAESG--NLRHTLMGHQS-LTSGME 463 (635)
Q Consensus 405 i~iwd~~~~~~~-------------~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~--~~~~~~~~~~~-~v~~~~ 463 (635)
|.+|++.++... .....++|||++|+....++ .|++||+.++ +....+..+.. ....+.
T Consensus 245 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 324 (741)
T 1yr2_A 245 VWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD 324 (741)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE
T ss_pred EEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe
Confidence 888998665421 12334789999998887544 8999999877 41344544443 333445
Q ss_pred ecCCEEEEEeCC----CcEEEEECCCC--ceeEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC-CCceeeee
Q psy18018 464 LRNNILVSGNAD----STVKVWDIVSG--QCLQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK-TGEFSTPL 535 (635)
Q Consensus 464 ~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~-~~~~~~~~ 535 (635)
.+++.|+..+.+ +.|.+||+.++ +....+.. +...+..+++ ++.++++...|+..+||.+. +++....+
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---SKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---CSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence 678877777653 45999999875 23333332 3445666777 56677888889987777654 34433333
Q ss_pred ccceecCceeEEeccCceecccccCCCeEEEEe----cCCCeEEEEeCCCCce
Q psy18018 536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS----SDDGTVKLWDVKTGEF 584 (635)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~v~iwd~~~~~~ 584 (635)
.. .....+..++++||++.|+.. ...++|++||+.+++.
T Consensus 402 ~~----------~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 402 SL----------PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BC----------SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred cC----------CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 21 124467788899998866632 3447899999998873
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=117.47 Aligned_cols=203 Identities=17% Similarity=0.109 Sum_probs=114.0
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~ 431 (635)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+ ..++..+++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~-------------------------------~~~g~~~v~ 54 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPT-------------------------------HVEEPAFLP 54 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------------------------------------CCEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecce-------------------------------EcCCCEEEE
Confidence 678899999999999999999998887765 22221111 123334555
Q ss_pred EeCCCcEEEEeCCCCceeeeeccCCc-cE-EEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018 432 GSLDTSIRVWEAESGNLRHTLMGHQS-LT-SGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN 508 (635)
Q Consensus 432 ~~~d~~i~~~d~~~~~~~~~~~~~~~-~v-~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 508 (635)
++.|+.++.||..+++.+..+..+.. .+ .+... .++.+++++.|+.++.||..+|+.+..+.. +. .+ ..+.+
T Consensus 55 ~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-~~-~~~p~ 129 (369)
T 2hz6_A 55 DPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-AD-SLSPS 129 (369)
T ss_dssp CTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------
T ss_pred eCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-cc-ccccc
Confidence 56777777777777776655543321 11 01112 456788888999999999999998887764 22 11 22337
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC---eEEEEecCCCeEEEEeCCCCceE
Q psy18018 509 SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS---RFVITSSDDGTVKLWDVKTGEFI 585 (635)
Q Consensus 509 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~v~iwd~~~~~~~ 585 (635)
+..+++++.|+.|+.||.++++....+.... ....+++++. ..+++++.||.|+.||..+|+.+
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTRELRWNATYFD-------------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSSSCCCEEEEEE-------------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred CCEEEEEecCCEEEEEECCCCCEEEeEeccc-------------ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence 7889999999999999999998766543211 1223344432 45666888999999999999998
Q ss_pred EeeeeccCCCCCceE-EEEEeCCCCeE
Q psy18018 586 RNLVSLDSGGSGGVV-WRIRASETKLV 611 (635)
Q Consensus 586 ~~~~~~~~~~~~~~i-~~l~~s~d~~~ 611 (635)
.... ..+++ ....+++||..
T Consensus 197 W~~~------~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 197 WIQN------YASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE------CSSCEEEEEECTTSSCE
T ss_pred EEec------CCCceEEEEEecCCceE
Confidence 8874 22333 34455666643
No 221
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.1e-08 Score=105.38 Aligned_cols=250 Identities=14% Similarity=0.157 Sum_probs=160.7
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeeeCCC----cce-eEEEEeCCEEEEEeC------CCcEEEEEccCCcceeEEE
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ----SLT-SGMELRNNILVSGNA------DSTVKVWDIVSGTKKLMFR 420 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~----~~v-~~l~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~ 420 (635)
.+..+++++.++.|..+|..+|+.+..+.... ..+ ......++.++.+.. +|.|..+|..+++......
T Consensus 116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 45678888899999999999999988776531 111 111223556666543 5889999998887765543
Q ss_pred ----------------------------------------EEeeCCcEEEEEeCCC-------------------cEEEE
Q psy18018 421 ----------------------------------------ICLFDGVHVVSGSLDT-------------------SIRVW 441 (635)
Q Consensus 421 ----------------------------------------~~~~~~~~l~~~~~d~-------------------~i~~~ 441 (635)
.+.++...++.+..++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 2334567777777665 39999
Q ss_pred eCCCCceeeeecc--CC-------ccE--EEEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCc---------c
Q psy18018 442 EAESGNLRHTLMG--HQ-------SLT--SGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNK---------H 498 (635)
Q Consensus 442 d~~~~~~~~~~~~--~~-------~~v--~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~ 498 (635)
|..+|+.+..++. |. .+. ..+..+++ .++.++.+|.++++|..+++.+........ .
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999999887764 22 222 23445665 689999999999999999998854432100 0
Q ss_pred cccE------------------------EEEEe--cCCEEEE------------------------------------Ee
Q psy18018 499 QSAV------------------------TCLQF--NSRFVIT------------------------------------SS 516 (635)
Q Consensus 499 ~~~v------------------------~~~~~--~~~~l~~------------------------------------~~ 516 (635)
..++ ..+++ +..+++. ..
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 0000 00222 2233322 11
Q ss_pred CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCC
Q psy18018 517 DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGS 596 (635)
Q Consensus 517 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 596 (635)
.+|.|..||+.+++.+...... .+.....+...+.++++++.|+.++.||.++|+.+..+..- ....
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~-~~~~ 502 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYP------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ-SGIV 502 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEES------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCC
T ss_pred ccceEEEEeCCCCcEEEEccCC------------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC-CCcc
Confidence 3478999999999877655431 22333344557888888999999999999999999888531 1122
Q ss_pred CceEEEEEeCCCCe-EEEEccC
Q psy18018 597 GGVVWRIRASETKL-VCAVGSR 617 (635)
Q Consensus 597 ~~~i~~l~~s~d~~-~l~~~~~ 617 (635)
..++ .+..+|+ ++++++.
T Consensus 503 ~~p~---~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 503 AAPM---TFELAGRQYVAIMAG 521 (668)
T ss_dssp SCCE---EEEETTEEEEEEEEC
T ss_pred cCce---EEEECCEEEEEEEec
Confidence 2333 3345666 6665553
No 222
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=9.1e-09 Score=106.05 Aligned_cols=81 Identities=11% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCccc-ccEEEEEecCC-E
Q psy18018 435 DTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ-SAVTCLQFNSR-F 511 (635)
Q Consensus 435 d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~-~ 511 (635)
+|.|..||+.+++.+.+...+.... ..+...+.+++.++.|+.++.||.++++.+..+....... .+++ ...+|+ +
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~~y 515 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGRQY 515 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCEEE
Confidence 4789999999999988776543322 3455678899999999999999999999998887632222 3333 244665 4
Q ss_pred EEEEe
Q psy18018 512 VITSS 516 (635)
Q Consensus 512 l~~~~ 516 (635)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.21 E-value=4.5e-09 Score=98.50 Aligned_cols=235 Identities=9% Similarity=-0.028 Sum_probs=131.6
Q ss_pred EEecCcEEEEec----------CCCeEEEEEccCCceEEeeeCCC-------cceeEEEEe--CCEEEEEeC--CCcEEE
Q psy18018 349 FQFDGVHVVSGS----------LDTSIRVWEAESGNLRHTLMGHQ-------SLTSGMELR--NNILVSGNA--DSTVKV 407 (635)
Q Consensus 349 ~s~~~~~l~~~~----------~dg~i~v~~~~~~~~~~~~~~~~-------~~v~~l~~~--~~~l~s~~~--dg~i~i 407 (635)
++||+++++++. .++.|.+||+.+++.+..+.... .....++++ +++++++.. +..+.+
T Consensus 72 ~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V 151 (368)
T 1mda_H 72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151 (368)
T ss_dssp ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence 555555555553 24566666666666666654320 122334443 445555542 344555
Q ss_pred --EEccCCcceeEEEE-----EeeCC-cEEEEEeCCCcEEEEeCCC-----Cceee----eeccCCccEEEEEecCCEEE
Q psy18018 408 --WDIVSGTKKLMFRI-----CLFDG-VHVVSGSLDTSIRVWEAES-----GNLRH----TLMGHQSLTSGMELRNNILV 470 (635)
Q Consensus 408 --wd~~~~~~~~~~~~-----~~~~~-~~l~~~~~d~~i~~~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~l~ 470 (635)
+|..+ ...... ..|++ ..+++.+.|+.+.+.++.+ ++... .+.....+. . ..++..++
T Consensus 152 ~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~ 226 (368)
T 1mda_H 152 SVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLV 226 (368)
T ss_dssp EETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEE
T ss_pred EEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEE
Confidence 66654 111111 12322 2344555677777777775 33321 111122233 2 44556555
Q ss_pred EEeCCCcEEEEECCCCc--eeEEecCCC---------cccccEEEEEecCCEEEEEeC---------CCcEEEEECCCCc
Q psy18018 471 SGNADSTVKVWDIVSGQ--CLQTLSGRN---------KHQSAVTCLQFNSRFVITSSD---------DGTVKLWDVKTGE 530 (635)
Q Consensus 471 s~~~dg~i~iwd~~~~~--~~~~~~~~~---------~~~~~v~~~~~~~~~l~~~~~---------d~~i~vwd~~~~~ 530 (635)
..+. +.+.+.|..... .+..+.... +.......+..+++.++.+.. ++.+.++|+.+++
T Consensus 227 ~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~ 305 (368)
T 1mda_H 227 WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence 5556 899999986532 222222100 011111345557777776533 2356799999999
Q ss_pred eeeeeccceecCceeEEeccCceecccccCCCe-EEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC
Q psy18018 531 FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE 607 (635)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 607 (635)
.+..+... .....++|+|||+ ++++.. .++.|.++|+.+++.+..+. -....+.+++.+
T Consensus 306 vv~~i~vg------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~------vg~~P~~i~~~~ 366 (368)
T 1mda_H 306 TSGPISNG------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE------LDKGPESLSVQN 366 (368)
T ss_dssp EEECCEEE------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC------CCSCCCEEECCC
T ss_pred EEEEEECC------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE------CCCCCCEEEeec
Confidence 88877542 2467899999998 555566 58999999999999999884 223344566554
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=1.3e-08 Score=98.38 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=143.3
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
..+..++++++++.+++...++.|+.||..++........... .. ++++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~----------------------------- 179 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVT----------------------------- 179 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEEC-----------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEe-----------------------------
Confidence 3455678899999888877789999999987766544433221 12 4443
Q ss_pred EeeCCcEEEEEeCCC--cEEEEeCCCCceeeee----ccCCccEEEEEecC--CEEEEEeCCCcEEEEECCCCceeEE--
Q psy18018 422 CLFDGVHVVSGSLDT--SIRVWEAESGNLRHTL----MGHQSLTSGMELRN--NILVSGNADSTVKVWDIVSGQCLQT-- 491 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~----~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~-- 491 (635)
++++.|+++..++ .|..++...+.....+ ........++++++ ..|+.+..++.|+.||..++.....
T Consensus 180 --~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 180 --KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp --TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred --cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence 3334444444333 4555555444332222 11233445566643 4555677788999999987653222
Q ss_pred --ecCCCcccccEEEEEec---CCEEEEEeCCCcEEEEECCCCceeeeeccce-ecCceeEE---eccCceecccccCCC
Q psy18018 492 --LSGRNKHQSAVTCLQFN---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSF-ILNPFYFL---IYSQPLLCPHLQFNS 562 (635)
Q Consensus 492 --~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~v~~~~~s~~~ 562 (635)
..+. ....+...++++ +.++++-..++.|+.|+.... ...+.... ........ ..-.....++++|+|
T Consensus 258 ~~~~g~-~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG 334 (409)
T 3hrp_A 258 LELSGS-LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG 334 (409)
T ss_dssp CCCCSC-CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred ccccCC-CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence 1110 011111266663 455666667788999987643 22221110 00000000 001246789999999
Q ss_pred eEEEEec-CCCeEEEEeCCCCceEEeeeecc-CC---------CCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 563 RFVITSS-DDGTVKLWDVKTGEFIRNLVSLD-SG---------GSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 563 ~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~-~~---------~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+++++-. .++.|+.||+.+++.. .+.... .. ..-.....++++++|.++++-..++. |..+++
T Consensus 335 ~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~----Ir~i~~ 408 (409)
T 3hrp_A 335 NFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA----IRKYAV 408 (409)
T ss_dssp CEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE----EEEEEE
T ss_pred CEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe----EEEEEe
Confidence 9888877 8899999998888754 332210 00 01245889999999988888888876 555544
No 225
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.20 E-value=9.2e-08 Score=96.38 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=98.4
Q ss_pred cEEEEeCCCCceeeeeccC----------CccEE-EEEecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCc-----
Q psy18018 437 SIRVWEAESGNLRHTLMGH----------QSLTS-GMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNK----- 497 (635)
Q Consensus 437 ~i~~~d~~~~~~~~~~~~~----------~~~v~-~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----- 497 (635)
.+..+|..+|+.+..++.. ..++. ....+++ .++.++.+|.++++|..+++.+........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5888899999888776532 12222 2223553 577888899999999999988876643110
Q ss_pred -----ccccE--------------------------EEEEe--cCCEEEEEe----------------------------
Q psy18018 498 -----HQSAV--------------------------TCLQF--NSRFVITSS---------------------------- 516 (635)
Q Consensus 498 -----~~~~v--------------------------~~~~~--~~~~l~~~~---------------------------- 516 (635)
...++ ..+++ +..+++...
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 00011 01233 234444432
Q ss_pred ---------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe
Q psy18018 517 ---------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587 (635)
Q Consensus 517 ---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 587 (635)
.+|.|..||..+++.+...... ..+....+...+.+++.++.|+.|+.||.++|+.+.+
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEES------------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCC------------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 3578999999999877665431 2222333333556677799999999999999999998
Q ss_pred eeeccCCCCCceEEEEEeCCCCeEEE
Q psy18018 588 LVSLDSGGSGGVVWRIRASETKLVCA 613 (635)
Q Consensus 588 ~~~~~~~~~~~~i~~l~~s~d~~~l~ 613 (635)
+..- ......++ .+..+|+.++
T Consensus 501 ~~~~-~~~~~~p~---~~~~~G~~yv 522 (571)
T 2ad6_A 501 FKMP-SGGIGSPM---TYSFKGKQYI 522 (571)
T ss_dssp EECS-SCCCSCCE---EEEETTEEEE
T ss_pred EeCC-CCcEeeeE---EEEECCEEEE
Confidence 8532 11222333 3556776443
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=3.7e-13 Score=128.40 Aligned_cols=248 Identities=11% Similarity=-0.020 Sum_probs=135.9
Q ss_pred ecCCEEEEEeCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC-e-E
Q psy18018 150 YDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG-V-W 227 (635)
Q Consensus 150 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~-v-~ 227 (635)
.++..+++++.||.|..||..+|+.+.++.. ...........+..+++++.||.|+.||..+|+.+..+..+... + .
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 3788999999999999999999998887765 33333333344557777789999999999999887776544221 1 0
Q ss_pred EEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018 228 SSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL 306 (635)
Q Consensus 228 ~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
+..+ .++.+++++.|+.+..||..+++....
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~------------------------------------------------ 117 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT------------------------------------------------ 117 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC-------------------------------------------------------
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEE------------------------------------------------
Confidence 1122 466788899999999999887643210
Q ss_pred hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcce
Q psy18018 307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT 386 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v 386 (635)
.... ....++|++..+++++.++.|+.||..+++.+..+..+. .
T Consensus 118 --------------------~~~~--------------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~ 161 (369)
T 2hz6_A 118 --------------------LSSA--------------FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--Y 161 (369)
T ss_dssp -------------------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--E
T ss_pred --------------------ecCC--------------CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--c
Confidence 0000 001244577888999999999999999998776654321 1
Q ss_pred eEEEEeC-----CEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEEEeCCCc------------EEEEeCCCCc--
Q psy18018 387 SGMELRN-----NILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTS------------IRVWEAESGN-- 447 (635)
Q Consensus 387 ~~l~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~~~~d~~------------i~~~d~~~~~-- 447 (635)
...++.+ +.+++++.+|.+..||..+++........+|-- .+...+.|+. ++.+|..+|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~-~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~ 240 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV-AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVG 240 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE-EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHH
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE-EEEEecCCceEeccceeecccceeeeehhcCCcc
Confidence 2222332 567778888999999988887655443211100 0122223333 3344544454
Q ss_pred --eeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECC
Q psy18018 448 --LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 484 (635)
Q Consensus 448 --~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 484 (635)
.+..+.... .+.+....+..++.++.||.++.++..
T Consensus 241 ~~~~W~~~~~~-~~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 241 RITKWKYPFPK-ETEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHTSCCCCCC-HHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred cceeeeeccCc-cccccccccceEEEecccCCEEecCcc
Confidence 333332111 111111234577778888888887764
No 227
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.18 E-value=3.2e-07 Score=92.26 Aligned_cols=245 Identities=15% Similarity=0.186 Sum_probs=153.3
Q ss_pred EEEecCCCeEEEEEccCCceEEeeeCCC-----cceeEEEEeCCEEEEEe------CCCcEEEEEccCCcceeEEEE---
Q psy18018 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQ-----SLTSGMELRNNILVSGN------ADSTVKVWDIVSGTKKLMFRI--- 421 (635)
Q Consensus 356 l~~~~~dg~i~v~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~--- 421 (635)
+++++.++.+..+|..+|+.+....... .....-...++.++.++ .++.|..+|..+++.......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 7888889999999999999987765432 11112222355666665 378999999999887655443
Q ss_pred --------------------------------------------EeeCCcEEEEEeCC----------------CcEEEE
Q psy18018 422 --------------------------------------------CLFDGVHVVSGSLD----------------TSIRVW 441 (635)
Q Consensus 422 --------------------------------------------~~~~~~~l~~~~~d----------------~~i~~~ 441 (635)
+.++...++.+..+ +.|..+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 12345566666654 379999
Q ss_pred eCCCCceeeeeccCC----------ccEE-EEE-ecC---CEEEEEeCCCcEEEEECCCCceeEEecCCC----------
Q psy18018 442 EAESGNLRHTLMGHQ----------SLTS-GME-LRN---NILVSGNADSTVKVWDIVSGQCLQTLSGRN---------- 496 (635)
Q Consensus 442 d~~~~~~~~~~~~~~----------~~v~-~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------- 496 (635)
|.++|+.+..++... .++. .+. .++ ..++.++.+|.++++|..+++.+.......
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 999999988776422 1222 121 346 467788999999999999999887665311
Q ss_pred cccccE--------------------------EEEEe--cCCEEEEE---------------------------------
Q psy18018 497 KHQSAV--------------------------TCLQF--NSRFVITS--------------------------------- 515 (635)
Q Consensus 497 ~~~~~v--------------------------~~~~~--~~~~l~~~--------------------------------- 515 (635)
....++ ..+++ +..++++.
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 000000 01111 11222111
Q ss_pred e------CCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018 516 S------DDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 516 ~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
+ .+|.|..||+.+++.+-..... .+...-.+...+.+++.++.|+.++.||.++|+.+.++.
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~------------~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMER------------FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEES------------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCC------------CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 1 3578999999999877665421 111111223356677779999999999999999999884
Q ss_pred eccCCCCCceEEEEEeCCCCe-EEEEcc
Q psy18018 590 SLDSGGSGGVVWRIRASETKL-VCAVGS 616 (635)
Q Consensus 590 ~~~~~~~~~~i~~l~~s~d~~-~l~~~~ 616 (635)
. .......+ +.+..||+ |+++.+
T Consensus 512 l-~~g~~~~P---~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 512 I-PSGAIGYP---MTYTHKGTQYVAIYY 535 (599)
T ss_dssp C-SSCCCSCC---EEEEETTEEEEEEEE
T ss_pred C-CCCcEecc---EEEEeCCEEEEEEEc
Confidence 2 22223333 44456776 555443
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.16 E-value=2.1e-08 Score=88.35 Aligned_cols=184 Identities=11% Similarity=0.041 Sum_probs=128.4
Q ss_pred CCcEEEEeCCCCceeeeeccCC-ccEEEEEecCCEEE-EEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEE
Q psy18018 435 DTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILV-SGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFV 512 (635)
Q Consensus 435 d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 512 (635)
++.|+++|+.+++.+..+.-.. ....++.++++.+. +.-.++.+.++|..+.+.+.++... .... ..+++|++.+
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g-~glt~Dg~~l 119 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDG-WGLATDGKIL 119 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSSC-CEEEECSSSE
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCCe-EEEEECCCEE
Confidence 5789999999998888765322 23346777776554 4456789999999999999988742 1122 4478888878
Q ss_pred EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc
Q psy18018 513 ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD 592 (635)
Q Consensus 513 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 592 (635)
+++..++.|.++|..+.+....+.......+ -...+.+.|. ++++.+....++.|.+.|..+++.+..+..-.
T Consensus 120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g 192 (266)
T 2iwa_A 120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHR------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN 192 (266)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH
T ss_pred EEECCCCeEEEEECCCCcEEEEEEECCCCcc------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC
Confidence 7777889999999999888777654311111 1134566777 78777777678999999999999998885310
Q ss_pred --------CCCCCceEEEEEeCCCCeE-EEEccCCCeeEeEEEEEeeec
Q psy18018 593 --------SGGSGGVVWRIRASETKLV-CAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 593 --------~~~~~~~i~~l~~s~d~~~-l~~~~~dg~~~~~l~~~d~~~ 632 (635)
..........++|+|+++. ++++...+. |+.+++.+
T Consensus 193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~----v~~i~l~~ 237 (266)
T 2iwa_A 193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK----LFEIKLHL 237 (266)
T ss_dssp HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE----EEEEEEEE
T ss_pred cccccccccccccCceEEEEEcCCCCEEEEECCCCCe----EEEEEEec
Confidence 0011246789999999864 455555555 77777654
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.16 E-value=5.5e-09 Score=98.76 Aligned_cols=268 Identities=10% Similarity=0.048 Sum_probs=156.9
Q ss_pred CCCceEEEEecCcEEEEec--CCCeEEEEEccCCceEEeee-------CCCcceeEEEEeC-CEEEEEeC------CCcE
Q psy18018 342 HVPDLFGFQFDGVHVVSGS--LDTSIRVWEAESGNLRHTLM-------GHQSLTSGMELRN-NILVSGNA------DSTV 405 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~-------~~~~~v~~l~~~~-~~l~s~~~------dg~i 405 (635)
..+..++++++|+.+++.. .++.+++|.+.+++. ..+. .+-..+.++++++ ..|..... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 3455678889999888853 234355555544543 2221 2445788899973 44554442 4788
Q ss_pred EEEEccCCcceeEEE---------------EEeeCCcEEEEE-e---CCCcEEEEeCCCCceeeeeccCCccE---EEEE
Q psy18018 406 KVWDIVSGTKKLMFR---------------ICLFDGVHVVSG-S---LDTSIRVWEAESGNLRHTLMGHQSLT---SGME 463 (635)
Q Consensus 406 ~iwd~~~~~~~~~~~---------------~~~~~~~~l~~~-~---~d~~i~~~d~~~~~~~~~~~~~~~~v---~~~~ 463 (635)
.+||+.+++....+. .+++++..++.+ . .++.|.+||+.+++....+.+|.... ..+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 999988776433322 234444444443 3 56788899988887776665543211 2334
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceee-eecccee
Q psy18018 464 LRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFST-PLMSSFI 540 (635)
Q Consensus 464 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~ 540 (635)
+++..+.+.+.++.++.|. ..+..+++ +++.|+.+..++. ++|.+....... .+.....
T Consensus 176 ~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp ETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHH
T ss_pred ECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhh
Confidence 4565666666677665442 12345666 6788888776663 444443211000 0000000
Q ss_pred cCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
...+....+......++++++|+++++...++.|.+||.++++.. .+.. ........+++|.++|+++++.+..+.
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~---~~~~~~p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVT---DEKLSWTDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE---CGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEE---CCceecCCeeEECCCCcEEEEeCcccc
Confidence 011111223345677999999999999999999999998667643 3321 123456899999999998888765433
Q ss_pred e------------EeEEEEEeeec
Q psy18018 621 E------------ETKLLVLDFDV 632 (635)
Q Consensus 621 ~------------~~~l~~~d~~~ 632 (635)
+ ..+||.++++.
T Consensus 314 ~~~f~~~~~~~~~~~~i~~~~~~~ 337 (343)
T 2qe8_A 314 SAPLNAGENISAPPYYIFRLKPLA 337 (343)
T ss_dssp SGGGBTTCCCCCSCEEEEEECCSS
T ss_pred ccccccCCCcCcCCeEEEEEECCC
Confidence 2 24666666543
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=1.3e-08 Score=95.47 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=121.1
Q ss_pred CCceEEEEecCcEEEEecCCCeEEEEEccCCc-----------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018 343 VPDLFGFQFDGVHVVSGSLDTSIRVWEAESGN-----------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 411 (635)
Q Consensus 343 ~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~ 411 (635)
....+++++....+++|+.++ +.+|++.+.+ ..... .+.. |..++|++..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~---------------- 99 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQ---------------- 99 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTE----------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCE----------------
Confidence 567789999999999999885 6669876433 10111 2333 5555554444
Q ss_pred CCcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018 412 SGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQT 491 (635)
Q Consensus 412 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 491 (635)
|+++ .++.|++||+.+.........|...+.++.+.+..+++++.||.+.+||++++....
T Consensus 100 -----------------L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 100 -----------------VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp -----------------EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred -----------------EEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence 4444 445566666555444444555666677777655558899999999999999877643
Q ss_pred ecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCce--eeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018 492 LSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEF--STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567 (635)
Q Consensus 492 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 567 (635)
+...|+|++|+.+-++.|..||++++|+...++. ...+....... ....|...|.+++|.+++.++++
T Consensus 161 ------~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~--~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 161 ------LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE--ELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ------EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHH--TSCTTTSEEEEEEESSSSEEEEE
T ss_pred ------ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccc--cccCCCeeEEEEEEecCCeEEEE
Confidence 3457999999766689999999999998887764 33442210000 00125678999999999999987
No 231
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.14 E-value=9.3e-07 Score=81.83 Aligned_cols=185 Identities=9% Similarity=0.019 Sum_probs=102.3
Q ss_pred EEEEecCcEEEEecCCCeEEEEEccCCceEEe-eeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeC
Q psy18018 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFD 425 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 425 (635)
+++.++++.+++...++.|..++.. ++.... +......+.+++++ ++
T Consensus 109 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-------------------------------~~ 156 (300)
T 2qc5_A 109 ITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-------------------------------SD 156 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-------------------------------TT
T ss_pred ceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-------------------------------CC
Confidence 3455566666665556777777766 443321 22122344455443 23
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceeee-eccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018 426 GVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAV 502 (635)
Q Consensus 426 ~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 502 (635)
++..++...++.|..++. +++.... ...+...+.++.++ +++.++....+.|..||. +++.... ... .....+
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~-~~~~~~ 232 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP-TPNARP 232 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS-STTCCE
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC-CCCCCc
Confidence 332233333445555555 3333221 11233456677764 556666666778999998 4544332 111 134557
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC
Q psy18018 503 TCLQFN--SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580 (635)
Q Consensus 503 ~~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~ 580 (635)
.+++++ ++++++...++.|..|+. +++.. .+... .....+.+++++++|++.++.. + .|..+|.+
T Consensus 233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~---------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ---------TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC---------STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC---------ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 788884 666666656789999998 45432 11110 1234578889999998777655 4 67777653
No 232
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.14 E-value=4.5e-08 Score=90.44 Aligned_cols=223 Identities=10% Similarity=0.042 Sum_probs=129.0
Q ss_pred ceEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 345 DLFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 345 ~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
....|+++ +..+++...++.|..||..+++.. .+. ....+.+++++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~------------------------------- 62 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALR------------------------------- 62 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEB-------------------------------
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEEC-------------------------------
Confidence 34557884 556666777889999999876642 222 23455666654
Q ss_pred eCCcEEEEEeCCCcEEEEeCCCCceeeeecc----CCccEEEEEe--cCCEEEEEeC---------CCcEEEEECCC-Cc
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMG----HQSLTSGMEL--RNNILVSGNA---------DSTVKVWDIVS-GQ 487 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~--~~~~l~s~~~---------dg~i~iwd~~~-~~ 487 (635)
++|++++ +. ++.|.+||..+++....... ....+..+.+ +++++++... ...-.+|.+.. ++
T Consensus 63 ~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 63 QSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp TTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred CCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 3333222 22 34455566555443222111 1234556665 4555554322 12334554442 33
Q ss_pred eeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEEC--CCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018 488 CLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDV--KTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS 562 (635)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 562 (635)
...... .......+++ +++.| ++.+.++.|.+|++ .++........ ... .........++++++|
T Consensus 141 ~~~~~~----~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~-~~~-----~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 141 VKKYFD----QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV-YKL-----EKEEQIPDGMCIDAEG 210 (297)
T ss_dssp EEEEEE----EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE-EEC-----CGGGCEEEEEEEBTTS
T ss_pred EEEEee----ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE-EEC-----CCCCCCCCeeEECCCC
Confidence 322222 2334566777 57655 55566789999997 45543211000 000 0122456788999999
Q ss_pred eEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC-CCCeEEEEccC
Q psy18018 563 RFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS-ETKLVCAVGSR 617 (635)
Q Consensus 563 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~d~~~l~~~~~ 617 (635)
++.++...++.|..||..+++.+..+. .+...+++++|. ||++.|.+++.
T Consensus 211 ~lwva~~~~~~v~~~d~~tG~~~~~i~-----~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 211 KLWVACYNGGRVIRLDPVTGKRLQTVK-----LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEETTTEEEEECTTTCCEEEEEE-----CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCEEEEEcCCCceEEEEEE-----CCCCCceEEEEeCCCCCEEEEEcC
Confidence 988888778899999999999988873 344679999998 88876655443
No 233
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.13 E-value=1.7e-07 Score=94.55 Aligned_cols=305 Identities=10% Similarity=0.068 Sum_probs=171.8
Q ss_pred cCCEEEEEeC-CCeEEEEeC-CCccceeeccccceeE----------EeeeccCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy18018 151 DGKLVVSGAY-DYMVKIWNP-DTEECLHAELQETEVE----------LSHGYALRSRIVSGSDDNTLKVWSATTGKCLRT 218 (635)
Q Consensus 151 ~~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 218 (635)
.+..++.++. ++.|.-+|. .+++.+.+........ ..-....++++++++.|+.+..+|..+|+.+.+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 4566666776 888999999 8998887654332100 000112367899999999999999999999987
Q ss_pred EeCCCC----CeE-EEEeeCCEEEEeeC------ceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeec
Q psy18018 219 LIGHTG----GVW-SSQMAGNIIISGST------DRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISL 287 (635)
Q Consensus 219 ~~~h~~----~v~-~~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (635)
...... .+. +....+..++.++. ++.|..+|..+++.............. ...+.....
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~------~~~p~~~~~---- 210 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV------RLAKDFNSA---- 210 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH------TBCTTTTTT----
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc------ccCcccccc----
Confidence 653220 111 11223556666654 789999998876543321110000000 000000000
Q ss_pred cccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCC-----
Q psy18018 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLD----- 362 (635)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----- 362 (635)
..+ .+. .......|.... ........-...++.++...++.++.+
T Consensus 211 ----------------~~~-~G~-------~~~g~~~w~~~~------~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 211 ----------------NPH-YGQ-------FGLGTKTWEGDA------WKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWN 260 (571)
T ss_dssp ----------------CGG-GCC-------SSHHHHTSSTTG------GGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred ----------------ccc-ccc-------cccccccCcccc------eecCCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence 000 000 000000010000 000000011123456655666655532
Q ss_pred -----------CeEEEEEccCCceEEeeeCC--C--------ccee-EEEEeC---CEEEEEeCCCcEEEEEccCCccee
Q psy18018 363 -----------TSIRVWEAESGNLRHTLMGH--Q--------SLTS-GMELRN---NILVSGNADSTVKVWDIVSGTKKL 417 (635)
Q Consensus 363 -----------g~i~v~~~~~~~~~~~~~~~--~--------~~v~-~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~ 417 (635)
+.|..+|..+|+.+..++.. . .++. ....++ ..++.++.+|.+.++|..+++...
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 35899999999998777532 1 1211 111223 357778889999999988876543
Q ss_pred EEE------------------------------------------------EEeeCCcEEEEEe----------------
Q psy18018 418 MFR------------------------------------------------ICLFDGVHVVSGS---------------- 433 (635)
Q Consensus 418 ~~~------------------------------------------------~~~~~~~~l~~~~---------------- 433 (635)
... .++|+...+++..
T Consensus 341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 420 (571)
T 2ad6_A 341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA 420 (571)
T ss_dssp EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence 322 1334445555543
Q ss_pred ---------------------CCCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEE
Q psy18018 434 ---------------------LDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQT 491 (635)
Q Consensus 434 ---------------------~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 491 (635)
.++.+..||+.+++.+.++....... ..+...+.+++.++.|+.++.+|.++++.+..
T Consensus 421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 34789999999999888775432211 12344577888899999999999999999998
Q ss_pred ecCC
Q psy18018 492 LSGR 495 (635)
Q Consensus 492 ~~~~ 495 (635)
+...
T Consensus 501 ~~~~ 504 (571)
T 2ad6_A 501 FKMP 504 (571)
T ss_dssp EECS
T ss_pred EeCC
Confidence 8753
No 234
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.11 E-value=2.6e-07 Score=92.90 Aligned_cols=305 Identities=12% Similarity=0.083 Sum_probs=170.5
Q ss_pred cCCEEEEEeC-CCeEEEEeC-CCccceeecccccee-----------EEeeec-cCCCE----EEEEeCCCcEEEEECCC
Q psy18018 151 DGKLVVSGAY-DYMVKIWNP-DTEECLHAELQETEV-----------ELSHGY-ALRSR----IVSGSDDNTLKVWSATT 212 (635)
Q Consensus 151 ~~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~----l~~~~~dg~i~vwd~~~ 212 (635)
.+..++.++. ++.|.-+|. .+++.+.+....... ...... +.++. +++++.|+.+..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 3566666776 788888898 888887765443211 001111 13444 89999999999999999
Q ss_pred CeEEEEEeCCCC----CeE-EEEeeCCEEEEee------CceeEEEecccceeeeccccccccCccceeeeeeeeccccc
Q psy18018 213 GKCLRTLIGHTG----GVW-SSQMAGNIIISGS------TDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQ 281 (635)
Q Consensus 213 ~~~~~~~~~h~~----~v~-~~~~~~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (635)
|+.+........ .+. +..+.+..++.++ .+|.|+.+|..+++.............. ...+...
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~------~~~p~~~ 214 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL------LLASDFN 214 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH------TBCTTTT
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc------ccccccc
Confidence 999977653220 111 1122355666665 3799999998876543321110000000 0000000
Q ss_pred cceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecC
Q psy18018 282 RDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSL 361 (635)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 361 (635)
. + . ...+... .....|... .........-...++.++...++.++.
T Consensus 215 ~--------~---------~----~~~g~~~-------~g~~tw~g~------~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 215 I--------K---------N----PHYGQKG-------LGTGTWEGD------AWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp T--------T---------C----GGGCCTT-------HHHHTSSTT------GGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred c--------c---------c----ccccccc-------cccccCCCc------ceecCCCccccceeEeCCCCEEEEeCC
Confidence 0 0 0 0000000 000000000 000000011112346666677776665
Q ss_pred C----------------CeEEEEEccCCceEEeeeCCCc----------cee-EEE-EeC---CEEEEEeCCCcEEEEEc
Q psy18018 362 D----------------TSIRVWEAESGNLRHTLMGHQS----------LTS-GME-LRN---NILVSGNADSTVKVWDI 410 (635)
Q Consensus 362 d----------------g~i~v~~~~~~~~~~~~~~~~~----------~v~-~l~-~~~---~~l~s~~~dg~i~iwd~ 410 (635)
+ +.|..+|..+|+.+..++.... ++. .+. .++ ..++.++.+|.+.++|.
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 4 3799999999999877764321 121 111 124 46777889999999998
Q ss_pred cCCcceeEEE------------------------------------------------EEeeCCcEEEEE----------
Q psy18018 411 VSGTKKLMFR------------------------------------------------ICLFDGVHVVSG---------- 432 (635)
Q Consensus 411 ~~~~~~~~~~------------------------------------------------~~~~~~~~l~~~---------- 432 (635)
.+++...... .++|+.+.+++.
T Consensus 341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (599)
T 1w6s_A 341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP 420 (599)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence 8877554332 122233333221
Q ss_pred -----------------------e------CCCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEE
Q psy18018 433 -----------------------S------LDTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWD 482 (635)
Q Consensus 433 -----------------------~------~d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd 482 (635)
+ ..|.+..||+.+++.+.+........ ..+...+.+++.++.|+.++.||
T Consensus 421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 1 34789999999999887765321111 12455788888899999999999
Q ss_pred CCCCceeEEecCC
Q psy18018 483 IVSGQCLQTLSGR 495 (635)
Q Consensus 483 ~~~~~~~~~~~~~ 495 (635)
.++++.+.+++..
T Consensus 501 ~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 501 SDTGDLLWKFKIP 513 (599)
T ss_dssp TTTCCEEEEEECS
T ss_pred CCCCCEEEEeeCC
Confidence 9999999988753
No 235
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.10 E-value=2e-07 Score=94.02 Aligned_cols=332 Identities=14% Similarity=0.099 Sum_probs=184.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCC---------eEEEEeeCCEEEEeeCceeEEEecccceeeeccccccc
Q psy18018 193 RSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGG---------VWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDS 263 (635)
Q Consensus 193 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~ 263 (635)
++.+++++.++.|.-+|..+|+.+.++...... -..+.+.+..++.++.|+.+..+|..+++.........
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 677777777555999999999999887644321 12334568888999999999999988765432211000
Q ss_pred cCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhhhhhhccccccCC
Q psy18018 264 CEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHV 343 (635)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (635)
.. .......
T Consensus 148 ~~-----------------------------------------------------------------------~~~~~~~ 156 (582)
T 1flg_A 148 HG-----------------------------------------------------------------------AGYTMTG 156 (582)
T ss_dssp GG-----------------------------------------------------------------------GTCBCCS
T ss_pred CC-----------------------------------------------------------------------cCccccc
Confidence 00 0000000
Q ss_pred CceEEEEe---cCc-EEEEec------CCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc--
Q psy18018 344 PDLFGFQF---DGV-HVVSGS------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV-- 411 (635)
Q Consensus 344 ~~~~~~s~---~~~-~l~~~~------~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~-- 411 (635)
..+ +.. +++ .+++++ .++.|+.+|..+|+.+........ .+............+.....|...
T Consensus 157 sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~---~~~p~~~~~~~~~g~~g~~~w~~~~~ 231 (582)
T 1flg_A 157 APT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG---HMGRLNGKDSTVTGDVKAPSWPDDRN 231 (582)
T ss_dssp CCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT---CEEEETTEEEEESSCTTCTTSCBCTT
T ss_pred CCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc---ccccccCcccccccccccccCCCccc
Confidence 011 111 122 555654 378999999999998876543211 111111222222111111222211
Q ss_pred -----------CCcceeEEEEEeeCCcEEEEEeC--------------------C----CcEEEEeCCCCceeeeecc--
Q psy18018 412 -----------SGTKKLMFRICLFDGVHVVSGSL--------------------D----TSIRVWEAESGNLRHTLMG-- 454 (635)
Q Consensus 412 -----------~~~~~~~~~~~~~~~~~l~~~~~--------------------d----~~i~~~d~~~~~~~~~~~~-- 454 (635)
.+........+.++...++.+.. | +.|..+|..+|+.+..++.
T Consensus 232 ~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~ 311 (582)
T 1flg_A 232 SPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTP 311 (582)
T ss_dssp STTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESST
T ss_pred cccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCC
Confidence 00011111233445555555542 2 5799999999998887653
Q ss_pred CC--------ccEEE-EE-ecCC---EEEEEeCCCcEEEEECCCCceeEEecCCCcc----------ccc----------
Q psy18018 455 HQ--------SLTSG-ME-LRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKH----------QSA---------- 501 (635)
Q Consensus 455 ~~--------~~v~~-~~-~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~---------- 501 (635)
|. .++.. .. .+++ .++.++.+|.++++|..+++.+..+...... ..+
T Consensus 312 ~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 391 (582)
T 1flg_A 312 NDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPL 391 (582)
T ss_dssp TCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCC
T ss_pred CCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCcc
Confidence 32 22221 11 2453 7888999999999999999888765532100 000
Q ss_pred -----------EE-----------EEEec--CCEEEEEe---------------------------------CCCcEEEE
Q psy18018 502 -----------VT-----------CLQFN--SRFVITSS---------------------------------DDGTVKLW 524 (635)
Q Consensus 502 -----------v~-----------~~~~~--~~~l~~~~---------------------------------~d~~i~vw 524 (635)
+. .+++| ..++++.. .+|.|..|
T Consensus 392 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~ 471 (582)
T 1flg_A 392 PEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAM 471 (582)
T ss_dssp CCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEE
T ss_pred ccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEE
Confidence 00 11222 12222221 36789999
Q ss_pred ECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018 525 DVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR 604 (635)
Q Consensus 525 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 604 (635)
|+.+++.+-..... .++..-.+...+.+++.++.|+.++.||.++|+.+.++..- ......+ +.
T Consensus 472 D~~tG~~~W~~~~~------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~g~~a~P---~~ 535 (582)
T 1flg_A 472 DPVSGKVVWEHKEH------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-SGIVSPP---IT 535 (582)
T ss_dssp CTTTCCEEEEEEES------------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCC---EE
T ss_pred ECCCCCEEEEecCC------------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-CCcccCc---eE
Confidence 99999877665432 12222222234667778999999999999999999988531 1111222 55
Q ss_pred eCCCCe-EEEEcc
Q psy18018 605 ASETKL-VCAVGS 616 (635)
Q Consensus 605 ~s~d~~-~l~~~~ 616 (635)
+..||+ |+++.+
T Consensus 536 y~~~G~qYv~~~~ 548 (582)
T 1flg_A 536 WEQDGEQYLGVTV 548 (582)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEc
Confidence 567877 555443
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=8.3e-09 Score=96.73 Aligned_cols=247 Identities=10% Similarity=-0.044 Sum_probs=156.8
Q ss_pred eEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEe----------CCCcEEEEEccCCcceeEEE-----------
Q psy18018 364 SIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN----------ADSTVKVWDIVSGTKKLMFR----------- 420 (635)
Q Consensus 364 ~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~----------- 420 (635)
.|.++|..+++.+..+.....+ .+.++ +..++++. .++.|.+||+.+.+......
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999988766666 67776 55666664 36889999999988766653
Q ss_pred -----EEeeCCcEEEEEeC--CCcEEE--EeCCCCceeeeeccCCccEEEEEec-CCEEEEEeCCCcEEEEECCC-----
Q psy18018 421 -----ICLFDGVHVVSGSL--DTSIRV--WEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVS----- 485 (635)
Q Consensus 421 -----~~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~----- 485 (635)
.++|||++++++.. +..+.+ +|..+ +.++..... ..+.++ ...+++.+.|+.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 37889999998875 467888 88877 344432111 123344 34667778899999999886
Q ss_pred CceeEEec-CCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCc--eeeeeccceec-CceeEEeccCceecccccCC
Q psy18018 486 GQCLQTLS-GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGE--FSTPLMSSFIL-NPFYFLIYSQPLLCPHLQFN 561 (635)
Q Consensus 486 ~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~ 561 (635)
++...... .......+. . ..++..++..+. +.+.+.|..+.. ....+...... ..... .......++|+||
T Consensus 200 ~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~--~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF--RSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE--EECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc--ccCcceeeEEcCC
Confidence 43321100 000012233 2 335566665666 899999997543 22221110000 00000 1112223679999
Q ss_pred CeEEEEecC---------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEcc-CCCeeEeEEEEEee
Q psy18018 562 SRFVITSSD---------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGS-RNGTEETKLLVLDF 630 (635)
Q Consensus 562 ~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~-~dg~~~~~l~~~d~ 630 (635)
++.+.++.. ++.+.++|+.+++.+..+.. ......|+|+|||+ ++++.. .++. |.++|.
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~----VsVID~ 344 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEV----LDIYDA 344 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTE----EEEEES
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCe----EEEEEC
Confidence 988776543 23566999999999988842 33688999999998 455555 4777 777776
Q ss_pred ec
Q psy18018 631 DV 632 (635)
Q Consensus 631 ~~ 632 (635)
..
T Consensus 345 ~t 346 (368)
T 1mda_H 345 AS 346 (368)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 237
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.08 E-value=7.7e-08 Score=83.39 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=126.8
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018 429 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507 (635)
Q Consensus 429 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 507 (635)
..+.+.+|.|+.+|+++++.+..+......-.++.+.++ +.+..-.++.+.+||..+.+.+.++... ..-..+++
T Consensus 68 y~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----~eGwGLt~ 143 (268)
T 3nok_A 68 FESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS----GEGWGLCY 143 (268)
T ss_dssp EEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS----SCCCCEEE
T ss_pred EEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC----CceeEEec
Confidence 344455666888888888777766211112245677655 5555557899999999999999999852 22246778
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe
Q psy18018 508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN 587 (635)
Q Consensus 508 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 587 (635)
+++.|+.+..++.|.++|.++.+....+.......+ -..++.+.|. +|++.+..-.++.|.+.|.++|+.+..
T Consensus 144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 888888888899999999999988877654321111 1123445555 888777776788999999999999988
Q ss_pred eeecc--------CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 588 LVSLD--------SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 588 ~~~~~--------~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+..-. .....+....+|++|+++.|.+.+..=- ++|.+.+
T Consensus 217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp---~~~ev~~ 264 (268)
T 3nok_A 217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP---RLFEVRL 264 (268)
T ss_dssp EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS---EEEEEEE
T ss_pred EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC---ceEEEEE
Confidence 85321 1123356789999998765555444321 3555544
No 238
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.08 E-value=3.3e-07 Score=92.38 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCceeeeeccCCccE-EEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCC
Q psy18018 435 DTSIRVWEAESGNLRHTLMGHQSLT-SGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGR 495 (635)
Q Consensus 435 d~~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 495 (635)
+|.+..||+.+++.+.+........ ..+...+.+++.++.|+.++.||.++++.+.+++..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 5789999999999887765432211 123456788889999999999999999999988764
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=8.3e-08 Score=90.13 Aligned_cols=190 Identities=15% Similarity=0.165 Sum_probs=117.4
Q ss_pred EeeCCcEEEEEeCC------CcEEEEeCCCCceeeeeccCCcc---EEEE--EecCCEEEEEe-----------------
Q psy18018 422 CLFDGVHVVSGSLD------TSIRVWEAESGNLRHTLMGHQSL---TSGM--ELRNNILVSGN----------------- 473 (635)
Q Consensus 422 ~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~---v~~~--~~~~~~l~s~~----------------- 473 (635)
+.|+| .++++..+ +.+.++|..+.+.+.++...... -..+ .++.+.+++..
T Consensus 145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 45666 44444433 78999999999999888633222 2224 44677777774
Q ss_pred --CCCcEEEEECCCCceeEEecCCCcccccEEEEEe----cCCEEEEEe------CCCcEEEEECCCCceeeeeccceec
Q psy18018 474 --ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF----NSRFVITSS------DDGTVKLWDVKTGEFSTPLMSSFIL 541 (635)
Q Consensus 474 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~ 541 (635)
.+.+|.+||+.+++.+.++.....+ .....+.| +++++++++ .+++|.+|....++...........
T Consensus 224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g-~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 224 DRYGNRIHFWDLRKRKRIHSLTLGEEN-RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp HHSCCEEEEEETTTTEEEEEEESCTTE-EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred hccCCEEEEEECCCCcEeeEEecCCCC-CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 3688999999998888887752111 22334444 577777766 4668888777654322111100000
Q ss_pred CceeE-E--------eccCceecccccCCCeEEEEecC-CCeEEEEeCCC---CceEEeeeeccCCCC------------
Q psy18018 542 NPFYF-L--------IYSQPLLCPHLQFNSRFVITSSD-DGTVKLWDVKT---GEFIRNLVSLDSGGS------------ 596 (635)
Q Consensus 542 ~~~~~-~--------~~~~~v~~~~~s~~~~~l~~~~~-d~~v~iwd~~~---~~~~~~~~~~~~~~~------------ 596 (635)
.+... + ........+.+||||++|.++.. .+.|.+||+.+ .+.+..+.. ++.
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t---GG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL---GGIFHRADHPAGHKL 379 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---BTTTTCBCCTTSCCC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe---CCeeccccccccccC
Confidence 00000 0 00235778999999998887764 68999999863 344444421 111
Q ss_pred CceEEEEEeCCCCeEEEEcc
Q psy18018 597 GGVVWRIRASETKLVCAVGS 616 (635)
Q Consensus 597 ~~~i~~l~~s~d~~~l~~~~ 616 (635)
.+.-..++++|||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 11357899999999999988
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.03 E-value=2.4e-07 Score=80.42 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=128.7
Q ss_pred EEEEeCCC--cEEEEeCCCCceeeeeccCCc-cEEEEEecCCEEEEE-eCCCcEEEEECCCCceeEEecCCCcccccEEE
Q psy18018 429 VVSGSLDT--SIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSG-NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTC 504 (635)
Q Consensus 429 l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 504 (635)
+.+.+.+| .|+.+|+.+++.+..+..... .-.++.+.++.|... -.++.+.+||..+.+.+.++... . .=..
T Consensus 56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~---~-eG~g 131 (262)
T 3nol_A 56 YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD---G-EGWG 131 (262)
T ss_dssp EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS---S-CCCC
T ss_pred EEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC---C-CceE
Confidence 34444444 788888888888877764333 234567776655444 46889999999999999999852 1 2245
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce
Q psy18018 505 LQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF 584 (635)
Q Consensus 505 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~ 584 (635)
++++++.|+.+..++.|.++|..+.+....+.......+ -..++.+.+. +|++.+..-.++.|.+.|.++|+.
T Consensus 132 lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 132 LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence 778888888777788899999999988877654211111 0123345565 788777777788999999999999
Q ss_pred EEeeeec--cC-----CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 585 IRNLVSL--DS-----GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 585 ~~~~~~~--~~-----~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+..+..- .+ .........+||+|+++.|.+.+..=. ++|.+.+.
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp---~~~ev~~~ 255 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP---KVFEITLT 255 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS---EEEEEEEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC---ceEEEEEe
Confidence 9888542 11 112346789999998776666665433 35555543
No 241
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.02 E-value=1.2e-07 Score=88.07 Aligned_cols=222 Identities=11% Similarity=0.101 Sum_probs=127.4
Q ss_pred ceEEEEecCc-EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 345 DLFGFQFDGV-HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 345 ~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
....++++++ .+++...++.|..|+. +++ ...+..+...+..++++ ++++++...++.|..|+..
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~---------- 115 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD---------- 115 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT----------
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC----------
Confidence 3466889888 5677777899999987 454 34444455566777775 3333322233445555432
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCceeeee---ccC-CccEEEEEe--cCCEEEE----EeC-------------CCcE
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTL---MGH-QSLTSGMEL--RNNILVS----GNA-------------DSTV 478 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~-~~~v~~~~~--~~~~l~s----~~~-------------dg~i 478 (635)
++..... .+. ...+..+.+ +++++++ |.. .+.|
T Consensus 116 ------------------------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 116 ------------------------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp ------------------------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred ------------------------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence 2211100 000 011223333 4555554 221 2457
Q ss_pred EEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCC------CcEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018 479 KVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDD------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550 (635)
Q Consensus 479 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (635)
..+|..+++..... . ......+++ +++.|+.+... +.|++|++..+. +..... ......
T Consensus 172 ~~~d~~~g~~~~~~-~----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~-------~~~~~~ 238 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA-D----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH-------FASVPD 238 (305)
T ss_dssp EEECSSSCCCEEEE-E----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE-------EECCSS
T ss_pred EEEcCCCCcEEEEe-c----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE-------EEECCC
Confidence 77777666543332 1 123445666 67877777665 689999987654 211110 000012
Q ss_pred CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
.....++++++|++.+ +..+ .|.+|+. +++.+..+.. .. .+.+++|+|+++.|.+++.++ ||.++
T Consensus 239 ~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~-----~~-~~~~~~f~~d~~~L~it~~~~-----l~~~~ 303 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPT-----PG-TASNCTFDQAQQRLFITGGPC-----LWMLP 303 (305)
T ss_dssp SCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEEC-----SS-CCCEEEECTTSCEEEEEETTE-----EEEEE
T ss_pred CCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEEC-----CC-ceeEEEEeCCCCEEEEEcCCe-----EEEEE
Confidence 3456788999999555 4444 4999997 5777777632 22 488999999999888888776 55554
No 242
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.02 E-value=3e-07 Score=85.90 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=42.5
Q ss_pred EEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEcc
Q psy18018 347 FGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIV 411 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~ 411 (635)
++++++|+.+++...++.|.+|+..+++.+..+..+...+.+++++ ++.|+ +...++.|..|++.
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 4577788777777677889999988777666666666677777775 33233 33334555555544
No 243
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.01 E-value=5.5e-07 Score=84.29 Aligned_cols=216 Identities=11% Similarity=0.026 Sum_probs=123.4
Q ss_pred eEEEEec-CcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEee
Q psy18018 346 LFGFQFD-GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF 424 (635)
Q Consensus 346 ~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 424 (635)
...++|+ +..+++...++.|..|+..+++.. .+. ....+.+++++ +
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~-------------------------------~ 99 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI-------------------------------S 99 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE-------------------------------E
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEe-------------------------------C
Confidence 3568886 455666667889999998876543 222 23345555554 3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceeeeecc----CCccEEEEEec--CCEEEEEeC------CCcEEEEECCCCceeEEe
Q psy18018 425 DGVHVVSGSLDTSIRVWEAESGNLRHTLMG----HQSLTSGMELR--NNILVSGNA------DSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 425 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~~~~--~~~l~s~~~------dg~i~iwd~~~~~~~~~~ 492 (635)
+++++++. . ..|.+||..+++....... ....+..+.++ ++++++... .+.|..++ +++... +
T Consensus 100 dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~ 174 (326)
T 2ghs_A 100 DSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-L 174 (326)
T ss_dssp TTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-E
T ss_pred CCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-e
Confidence 33333322 2 2255666555543222111 12345666664 555554432 24455555 444332 2
Q ss_pred cCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECC--CC-ceee--eeccceecCceeEEeccCceecccccCCCeE
Q psy18018 493 SGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVK--TG-EFST--PLMSSFILNPFYFLIYSQPLLCPHLQFNSRF 564 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~--~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 564 (635)
.. .......+++ +++.++.+ +.++.|.+|++. ++ +... .+.. .. ........++++++|++
T Consensus 175 ~~---~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~---~~-----~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 175 FA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID---ST-----GIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE---CT-----TSSSEEEEEEECTTSCE
T ss_pred eC---CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE---CC-----CCCCCCCeeEECCCCCE
Confidence 21 2234556777 57666444 557899999986 55 3211 1100 00 01234567889999998
Q ss_pred EEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC-CCCeEEEEcc
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS-ETKLVCAVGS 616 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~d~~~l~~~~ 616 (635)
.++...++.|.+||. +++.+..+. .+...+++++|+ +|++.|.+++
T Consensus 244 wva~~~~~~v~~~d~-~g~~~~~i~-----~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 244 WNARWGEGAVDRYDT-DGNHIARYE-----VPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEE-----CSCSBEEEEEEESTTSCEEEEEE
T ss_pred EEEEeCCCEEEEECC-CCCEEEEEE-----CCCCCcEEEEEecCCCCEEEEEe
Confidence 887767788999998 677776663 334569999998 8887665443
No 244
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.99 E-value=4.8e-08 Score=101.84 Aligned_cols=211 Identities=11% Similarity=0.053 Sum_probs=122.4
Q ss_pred ccccceEEEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCCCce-eeccCcceEEEEEEc-CCEEEEeeCC
Q psy18018 23 GHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKV-LKGHDDHVITCLQFS-GSRIVSGSDD 100 (635)
Q Consensus 23 gh~~~vi~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~-l~~h~~~vi~~~~~s-~~~l~s~~~d 100 (635)
+|...+ ..++|| |||++||.+.... -++...+.+||+.+++.+.. +.+.. ...++|+ ++.|+.++.+
T Consensus 126 ~~~~~l-~~~~~S----pDg~~lAy~~~~~---G~~~~~i~v~dl~tg~~~~~~~~~~k---~~~~~WsDg~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTAL-DQLSFS----RDGRILAYSLSLA---GSDWREIHLMDVESKQPLETPLKDVK---FSGISWLGNEGFFYSSYD 194 (693)
T ss_dssp TSCCEE-EEEEEC----TTSSEEEEEEECS---SCCEEEEEEEETTTCSEEEEEEEEEE---SCCCEEETTTEEEEEESS
T ss_pred CCcEEE-EEEEEC----CCCCEEEEEEecC---CCceEEEEEEECCCCCCCccccCCce---eccEEEeCCCEEEEEEec
Confidence 565555 899999 9999999643221 02345677899999886442 22211 1345666 8888887776
Q ss_pred CcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCe----EEEEeeC-CCcceEEEEe--cCCEEEEEeC----CCeEEEEeC
Q psy18018 101 NTLKVWSATTGKCLLVSGSRDATLRVWHIESGE----CLHVLVG-HLAAVRCVQY--DGKLVVSGAY----DYMVKIWNP 169 (635)
Q Consensus 101 ~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~----~~~~l~~-h~~~v~~l~~--~~~~l~s~~~----dg~v~iwd~ 169 (635)
.. . +.. +........|++|++.+.+ ++..... |...+..+.+ ||++|+.... ++.|.++|+
T Consensus 195 ~~------~-~~~-~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 195 KP------D-GSE-LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp CC------C---------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred Cc------c-ccc-ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 42 0 000 0001122345666655543 2333333 4555677778 8988755442 358999999
Q ss_pred CCcc-ceeeccccceeEEeeeccCCCEEEEEeC----CCcEEEEECCCCeE--EEEEeCCCCCeEEEEeeCCEEEEeeCc
Q psy18018 170 DTEE-CLHAELQETEVELSHGYALRSRIVSGSD----DNTLKVWSATTGKC--LRTLIGHTGGVWSSQMAGNIIISGSTD 242 (635)
Q Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~l~s~~~d 242 (635)
.++. ....+............++++.++..+. .+.|..+|+.++.. .+.+..|...+..+..+++.|+....+
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMV 346 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEE
T ss_pred CCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEE
Confidence 8764 2333333322222223455666555443 36799999987654 345555655555666678877766654
Q ss_pred e---eEEEecccc
Q psy18018 243 R---TLKGWSNAE 252 (635)
Q Consensus 243 g---~i~~w~~~~ 252 (635)
+ .|++|++.+
T Consensus 347 ~g~~~l~~~d~~g 359 (693)
T 3iuj_A 347 DATARVEQFDYEG 359 (693)
T ss_dssp TTEEEEEEECTTS
T ss_pred CCeeEEEEEECCC
Confidence 3 688888764
No 245
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.97 E-value=2.3e-07 Score=96.69 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=141.5
Q ss_pred ceEEEEecCcEEEE-----ecCCCeEEEEEccCCceEEe-eeCCCcceeEEEE-eCCEEEEEeCCC-------------c
Q psy18018 345 DLFGFQFDGVHVVS-----GSLDTSIRVWEAESGNLRHT-LMGHQSLTSGMEL-RNNILVSGNADS-------------T 404 (635)
Q Consensus 345 ~~~~~s~~~~~l~~-----~~~dg~i~v~~~~~~~~~~~-~~~~~~~v~~l~~-~~~~l~s~~~dg-------------~ 404 (635)
...++||||++++. |+....|+++|+.+++.+.. +... ....++| +++.|+.+..+. .
T Consensus 132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------CCCCE
T ss_pred EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCcccccccccCCCcE
Confidence 34679999999884 33346799999999986543 2211 1233445 467777777664 3
Q ss_pred EEEEEccCCcc--------------eeEEEEEeeCCcEEEEEeC----CCcEEEEeCCCCc-eeeeeccCCccEEE-EEe
Q psy18018 405 VKVWDIVSGTK--------------KLMFRICLFDGVHVVSGSL----DTSIRVWEAESGN-LRHTLMGHQSLTSG-MEL 464 (635)
Q Consensus 405 i~iwd~~~~~~--------------~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~-~~~~~~~~~~~v~~-~~~ 464 (635)
|.+|++.+... ......+++||++|+.... ++.++++|+.++. ....+..+...... +..
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 289 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDN 289 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEec
Confidence 89999876532 1123357899998866543 3589999998764 34455555544433 555
Q ss_pred cCCEEE-EEeCC---CcEEEEECCCCce--eEEecCCCcccccEEEEEecCCEEEEEeCCC---cEEEEECCCCceeeee
Q psy18018 465 RNNILV-SGNAD---STVKVWDIVSGQC--LQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---TVKLWDVKTGEFSTPL 535 (635)
Q Consensus 465 ~~~~l~-s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~ 535 (635)
+++.++ ....+ +.|..+|+.++.. ...+... ....+ .++.+++.|+....++ .|++|++..+. ...+
T Consensus 290 ~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l 365 (693)
T 3iuj_A 290 KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL-TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV 365 (693)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE-EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE-EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe
Confidence 666544 44433 5799999987654 2334331 22234 7777888777666544 68899987543 2222
Q ss_pred ccceecCceeEEeccCceecccccCCCeEEEEecCC----CeEEEEeCCCCce
Q psy18018 536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD----GTVKLWDVKTGEF 584 (635)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~ 584 (635)
.. .....+..+.++|+++.++....+ +++..||+.+++.
T Consensus 366 ~~----------p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 366 AL----------PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CC----------SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ec----------CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 21 123456677888888877665544 7899999988764
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=4.5e-07 Score=79.98 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=133.6
Q ss_pred ceEEEEecCcEEEEecC--CCeEEEEEccCCceEEeeeCCCc-ceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEE
Q psy18018 345 DLFGFQFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRI 421 (635)
Q Consensus 345 ~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~~~~~~~~~~~~-~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 421 (635)
.-+.+++++..+++.+. ++.|+++|+.+++.+..+..... ....+++.++.|+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~ly------------------------ 79 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLY------------------------ 79 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEE------------------------
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEE------------------------
Confidence 35678888654444432 57999999999998887653221 2223443333222
Q ss_pred EeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--cc
Q psy18018 422 CLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQ 499 (635)
Q Consensus 422 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~ 499 (635)
++.-.++.+.++|..+.+.+.++......-..++++++.++++..++.|.++|..+.+.+..+..... ..
T Consensus 80 --------v~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 80 --------QVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp --------EEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred --------EEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 22334677888898888888877533122355888888777777789999999999988888764211 11
Q ss_pred ccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCc--eeEEeccCceecccccCCCe-EEEEecCCCeEE
Q psy18018 500 SAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNP--FYFLIYSQPLLCPHLQFNSR-FVITSSDDGTVK 575 (635)
Q Consensus 500 ~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~v~ 575 (635)
.....+.+ +++.++....++.|.+.|..+++.+..+........ ..........+.++|+|+++ +++++...+.+.
T Consensus 152 ~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 152 IRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp CCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred ccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 13556666 565555555678999999999998887764211000 00000113457899999975 666677788899
Q ss_pred EEeCCCCc
Q psy18018 576 LWDVKTGE 583 (635)
Q Consensus 576 iwd~~~~~ 583 (635)
+.++...+
T Consensus 232 ~i~l~~~~ 239 (266)
T 2iwa_A 232 EIKLHLVR 239 (266)
T ss_dssp EEEEEECC
T ss_pred EEEEeccc
Confidence 88876543
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=1.4e-06 Score=75.04 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=123.8
Q ss_pred CcEEEEeCCCCceeeeeccCCc-cEEEEEecCC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEE
Q psy18018 436 TSIRVWEAESGNLRHTLMGHQS-LTSGMELRNN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI 513 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 513 (635)
..|+.+|+.+++.+..+..... .-.++.+.++ +.+..-.++.+.+||..+.+.+.++... . .-..++.+++.|+
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---~-~Gwglt~dg~~L~ 118 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP---G-EGWALTSDDSHLY 118 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS---S-CCCEEEECSSCEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC---C-CceEEeeCCCEEE
Confidence 4788888888888777654332 2245666655 4445557899999999999999999852 2 2256778888787
Q ss_pred EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc-
Q psy18018 514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD- 592 (635)
Q Consensus 514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~- 592 (635)
.+..++.|.++|.++.+....+.......+ -..++.+.+. +|++.+..-.+..|.+.|.++|+.+..+..-.
T Consensus 119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l 191 (243)
T 3mbr_X 119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRP------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQAL 191 (243)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEE------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred EECCCCeEEEEeCCCCeEEEEEEEccCCcc------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence 777889999999999988777654321111 0123344444 78877777678899999999999998875321
Q ss_pred -C------CCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 593 -S------GGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 593 -~------~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+ ....+....+|++|++..|.+.+..=. +||.+.+.
T Consensus 192 ~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp---~~~~v~~~ 234 (243)
T 3mbr_X 192 VPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP---MLYEIRLT 234 (243)
T ss_dssp STTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS---EEEEEEEC
T ss_pred ccccccccCCcCCceEEEEEcCCCCEEEEECCCCC---cEEEEEEe
Confidence 1 112356789999997665555554332 36665554
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=3.5e-07 Score=79.39 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=129.9
Q ss_pred EEeeeCCCc--ceeEEEEeCCEEE-EEeCCC--cEEEEEccCCcceeEEEE--------EeeCCcEEEEEe-CCCcEEEE
Q psy18018 376 RHTLMGHQS--LTSGMELRNNILV-SGNADS--TVKVWDIVSGTKKLMFRI--------CLFDGVHVVSGS-LDTSIRVW 441 (635)
Q Consensus 376 ~~~~~~~~~--~v~~l~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~~~-~d~~i~~~ 441 (635)
+.++ .|.. -...+.++++.|. +.+.+| .|+.+|+.+++....... ..+++..|.... .++.+.+|
T Consensus 34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 3444 3443 3478888755444 445555 899999999887665542 334555555554 58899999
Q ss_pred eCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCC-ccc-ccEEEEEe-cCCEEEEEeCC
Q psy18018 442 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRN-KHQ-SAVTCLQF-NSRFVITSSDD 518 (635)
Q Consensus 442 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-~~v~~~~~-~~~~l~~~~~d 518 (635)
|..+.+.+.++.... .-.+++++++.|+.+..++.|.++|..+.+.+..+.... +.. ..+..+.+ +|+..+..-.+
T Consensus 113 D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~ 191 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQT 191 (262)
T ss_dssp ETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTS
T ss_pred ECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccC
Confidence 999999999887533 224677888877777778889999999999888876521 111 23445666 67656555578
Q ss_pred CcEEEEECCCCceeeeeccceecCcee-EEeccCceecccccCCCeEEEEecCC
Q psy18018 519 GTVKLWDVKTGEFSTPLMSSFILNPFY-FLIYSQPLLCPHLQFNSRFVITSSDD 571 (635)
Q Consensus 519 ~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d 571 (635)
..|.+.|.++++.+..+.......... ........+.+|++|+++.|.+.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 899999999999988876532211110 00112356889999987766666643
No 249
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.87 E-value=4.3e-06 Score=80.66 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=42.9
Q ss_pred cEEEEEe--cCCEEEEEe-CCCcEEEEECCCCceeEEecCCC------------cccccEEEEEec--CCEEEEEeCCCc
Q psy18018 458 LTSGMEL--RNNILVSGN-ADSTVKVWDIVSGQCLQTLSGRN------------KHQSAVTCLQFN--SRFVITSSDDGT 520 (635)
Q Consensus 458 ~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~--~~~l~~~~~d~~ 520 (635)
...++++ +++++++-. .++.|+.|++.+++... +.+.. ..-.....++++ +.++++-..++.
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 3556666 466777777 78999999987776433 32210 012346677774 566666667777
Q ss_pred EEEEEC
Q psy18018 521 VKLWDV 526 (635)
Q Consensus 521 i~vwd~ 526 (635)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777664
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.85 E-value=2.7e-07 Score=80.00 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=125.8
Q ss_pred ceeEEEEeCC-EEEEEeCCCcEEEEEccCCcceeEEEE--------EeeCCcEEEE-EeCCCcEEEEeCCCCceeeeecc
Q psy18018 385 LTSGMELRNN-ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVHVVS-GSLDTSIRVWEAESGNLRHTLMG 454 (635)
Q Consensus 385 ~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~ 454 (635)
....+.++++ +..+.+.+|.|+.+|+.+++..... . ..+++..|.. .-.++.+.+||..+.+.+.++..
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 3478888855 4555667788999999988877665 2 2334444444 44688999999999999998875
Q ss_pred CCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--ccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCce
Q psy18018 455 HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEF 531 (635)
Q Consensus 455 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~ 531 (635)
. ..-.+++++++.|+.+..++.|.++|..+.+.+..+..... .-..++.+.+ +|+..+..-.+..|.+.|.++++.
T Consensus 135 ~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 135 S-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp S-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBE
T ss_pred C-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcE
Confidence 3 33357778888888887899999999999998888765211 1123456677 676555555688999999999999
Q ss_pred eeeeccceecCcee--EEeccCceecccccCCCeEEEEec
Q psy18018 532 STPLMSSFILNPFY--FLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 532 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
+..+.......... ...-....+.+|++|+++.|++.+
T Consensus 214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 88876542111000 001234568899999766555444
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=2.4e-07 Score=90.38 Aligned_cols=258 Identities=11% Similarity=-0.032 Sum_probs=157.2
Q ss_pred EEEecCCCeEEEEEccCCceEEeeeC---------------------------------C--------CcceeEEEE---
Q psy18018 356 VVSGSLDTSIRVWEAESGNLRHTLMG---------------------------------H--------QSLTSGMEL--- 391 (635)
Q Consensus 356 l~~~~~dg~i~v~~~~~~~~~~~~~~---------------------------------~--------~~~v~~l~~--- 391 (635)
|.+|+..|.++++-+.+++.+..+.- + ...-..+++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 67888999999999988877665420 0 011234455
Q ss_pred --eCCEEEEEeC-CCcEEEEEccCCcceeEEE-----------EEe-eCCcEEEEEe------------------CCCcE
Q psy18018 392 --RNNILVSGNA-DSTVKVWDIVSGTKKLMFR-----------ICL-FDGVHVVSGS------------------LDTSI 438 (635)
Q Consensus 392 --~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-----------~~~-~~~~~l~~~~------------------~d~~i 438 (635)
++++++.... +..|.+.|+.+.+...... ... |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3556666554 5679999998876554322 124 8999998885 23579
Q ss_pred EEEeCCCCceeeeecc-CCccEEEEEecCCEEEEEeCCC--------------------------------------cEE
Q psy18018 439 RVWEAESGNLRHTLMG-HQSLTSGMELRNNILVSGNADS--------------------------------------TVK 479 (635)
Q Consensus 439 ~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg--------------------------------------~i~ 479 (635)
.+.|..+.+...++.- ..-.-..++++++++++.+.+. .|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999999888877653 2223344566777777776443 366
Q ss_pred EEECCC--Cce-eEEecC-CCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceee--eeccceecCceeEEeccCc
Q psy18018 480 VWDIVS--GQC-LQTLSG-RNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFST--PLMSSFILNPFYFLIYSQP 552 (635)
Q Consensus 480 iwd~~~--~~~-~~~~~~-~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 552 (635)
+.|.++ ++. +..+.. ...| -..++.||+++++++ .+.+|.++|+.+.+... .+... ........-...
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~Ph---Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~--~~v~~~v~vG~g 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPH---GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR--SAVVAEPELGLG 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCC---CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG--GGEEECCBCCSC
T ss_pred EEeCcccCCceeEEEEecCCCce---EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc--cceEEEcCCCCC
Confidence 677666 333 344432 1111 122444788776665 67899999999653110 00000 000011112445
Q ss_pred eecccccCCCeEEEEecCCCeEEEEeCCC----------CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCC
Q psy18018 553 LLCPHLQFNSRFVITSSDDGTVKLWDVKT----------GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRN 618 (635)
Q Consensus 553 v~~~~~s~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~d 618 (635)
...++|+|||...++.-.|+.|.+||+.+ .+.+..+...-..+|...-..+.++|||++|+++..-
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 67889999996666777899999999987 4556666321111221112233568999999987653
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.83 E-value=1.4e-06 Score=74.99 Aligned_cols=193 Identities=9% Similarity=0.015 Sum_probs=128.7
Q ss_pred EEeeeCCCc--ceeEEEEeCCEEEEEe-CC--CcEEEEEccCCcceeEEEE--------EeeCCcEEEE-EeCCCcEEEE
Q psy18018 376 RHTLMGHQS--LTSGMELRNNILVSGN-AD--STVKVWDIVSGTKKLMFRI--------CLFDGVHVVS-GSLDTSIRVW 441 (635)
Q Consensus 376 ~~~~~~~~~--~v~~l~~~~~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~--------~~~~~~~l~~-~~~d~~i~~~ 441 (635)
+.++ .|.. ....+.|+++.|..++ .+ ..|+.+|+.+++....... ....+..|.. .-.++.+.+|
T Consensus 12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 3444 4443 5678888866555554 43 4899999998877665542 2334444444 4568899999
Q ss_pred eCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCc--ccccEEEEEe-cCCEEEEEeCC
Q psy18018 442 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNK--HQSAVTCLQF-NSRFVITSSDD 518 (635)
Q Consensus 442 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~l~~~~~d 518 (635)
|..+.+.+.++.... .-.+++.+++.|+.+..++.|.++|..+.+.+..+..... .-..++.+.+ +|+.++..-.+
T Consensus 91 D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s 169 (243)
T 3mbr_X 91 DLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLT 169 (243)
T ss_dssp ETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTT
T ss_pred ECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCC
Confidence 999999999887543 2357778888777777789999999999998888765210 1134556667 56655555567
Q ss_pred CcEEEEECCCCceeeeeccceecCceeE--EeccCceecccccCCCeEEEEecC
Q psy18018 519 GTVKLWDVKTGEFSTPLMSSFILNPFYF--LIYSQPLLCPHLQFNSRFVITSSD 570 (635)
Q Consensus 519 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~ 570 (635)
..|.+.|.++++.+..+........... .......+.+|++|+++.|.+.+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999999999888765422211100 012345688999997665555543
No 253
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.80 E-value=4.6e-06 Score=76.84 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=113.2
Q ss_pred EEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCEEEEEeCCCeEEEEeCCCccceeeccc----cceeEEe
Q psy18018 114 LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQ----ETEVELS 187 (635)
Q Consensus 114 ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~ 187 (635)
++++...++.|..||.++++. ..+ .....+.++++ +|+++++ . ++.|.+||..+++....... .......
T Consensus 27 l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp EEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 334444455556666555543 222 23467889999 7775444 4 67899999988764322111 1122223
Q ss_pred eeccCCCEEEEEeC----------CCcEEEEECCC-CeEEEEEeCCCCCeEEEEee--CCEE-EEeeCceeEEEeccc--
Q psy18018 188 HGYALRSRIVSGSD----------DNTLKVWSATT-GKCLRTLIGHTGGVWSSQMA--GNII-ISGSTDRTLKGWSNA-- 251 (635)
Q Consensus 188 ~~~~~~~~l~~~~~----------dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~-- 251 (635)
..+.++.+++.++. ...-.+|.+.. ++.. .+..+......++++ ++.+ ++.+.++.|..|++.
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~ 181 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ 181 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC
Confidence 33333444555442 12334554443 3332 233334456778884 6555 555667889999863
Q ss_pred ceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEeecCCcchhhhhhh
Q psy18018 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLE 331 (635)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (635)
++.+...+.. ..+
T Consensus 182 ~G~~~~~~~~-----------------------------------~~~-------------------------------- 194 (297)
T 3g4e_A 182 TGQISNRRSV-----------------------------------YKL-------------------------------- 194 (297)
T ss_dssp TCCEEEEEEE-----------------------------------EEC--------------------------------
T ss_pred CCcccCcEEE-----------------------------------EEC--------------------------------
Confidence 2211000000 000
Q ss_pred hhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018 332 AATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR 392 (635)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~ 392 (635)
......+..++++++|++.++....+.|..||..+++.+..+..+...+++++|.
T Consensus 195 ------~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 195 ------EKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp ------CGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred ------CCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence 0000122345688889877777777889999999899998888887889999997
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.73 E-value=0.00065 Score=73.98 Aligned_cols=162 Identities=8% Similarity=0.177 Sum_probs=101.3
Q ss_pred CeEEEEEccCCceEEeeeCCC-cceeEEEE---e---CCEEEEEe----------CCCcEEEEEccCCcceeEEE-----
Q psy18018 363 TSIRVWEAESGNLRHTLMGHQ-SLTSGMEL---R---NNILVSGN----------ADSTVKVWDIVSGTKKLMFR----- 420 (635)
Q Consensus 363 g~i~v~~~~~~~~~~~~~~~~-~~v~~l~~---~---~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~----- 420 (635)
+.|++.|..+.+.+..+.-.. ..+.+++. . ..++++|+ ..|.|.+|++...+......
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 468888888887766554332 34445443 2 36788776 35789999987443222222
Q ss_pred ----EEeeCCcEEEEEeCCCcEEEEeCCCCceee-eeccCCc-cEEEEEecCCEEEEEeCCCcEEEEECC--CCceeEEe
Q psy18018 421 ----ICLFDGVHVVSGSLDTSIRVWEAESGNLRH-TLMGHQS-LTSGMELRNNILVSGNADSTVKVWDIV--SGQCLQTL 492 (635)
Q Consensus 421 ----~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~-~v~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~ 492 (635)
+...+| +|++| ...++++|++...+.+. ....... .+..+...+++++.|..-..+.++..+ .++....-
T Consensus 887 ~v~al~~~~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 887 AVYSMVEFNG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp CEEEEEEETT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred cCEEEeeeCC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 234466 44444 35789999998765433 1111211 133555678999999988888776543 33322222
Q ss_pred cCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCC
Q psy18018 493 SGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~ 528 (635)
. ......++++.+ +...++.+..+|.+.+.....
T Consensus 965 ~--D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 965 R--DFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp E--CCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred e--ecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 2 224567888888 777888999999999988765
No 255
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.71 E-value=3e-06 Score=82.87 Aligned_cols=195 Identities=8% Similarity=0.020 Sum_probs=121.1
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCceeeeeccC-CccEEEEE----ecCCEEEEEe------------------CCCcEEE
Q psy18018 425 DGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH-QSLTSGME----LRNNILVSGN------------------ADSTVKV 480 (635)
Q Consensus 425 ~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~----~~~~~l~s~~------------------~dg~i~i 480 (635)
||+++..... ++.|.+.|+.+.+....+.-. ......+. ++++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 6777777665 457999999999987744322 12345555 4677888874 2457999
Q ss_pred EECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC---------------cEEEEECCCCc-------e-----ee
Q psy18018 481 WDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---------------TVKLWDVKTGE-------F-----ST 533 (635)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---------------~i~vwd~~~~~-------~-----~~ 533 (635)
.|..+.+...++.... .. .-..+..+|+++++.+.+. .+.+.|....+ . +.
T Consensus 180 ID~~t~~v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999998888876421 11 2233555788888887553 24444433211 0 11
Q ss_pred eecccee-cCc-eeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCCc------------eEEeeeeccCCCCCc
Q psy18018 534 PLMSSFI-LNP-FYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGE------------FIRNLVSLDSGGSGG 598 (635)
Q Consensus 534 ~~~~~~~-~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~------------~~~~~~~~~~~~~~~ 598 (635)
.+..... ... ...+.......++.++|||+++++++ .+.+|.++|+.+.+ ...++ ....
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v------~vG~ 331 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP------ELGL 331 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC------BCCS
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc------CCCC
Confidence 1111100 001 12333344567899999999877765 67899999999763 33333 2345
Q ss_pred eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
....++|+|||....+...|+. +..||.+
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsq----V~kwdi~ 360 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQ----VVKWNIE 360 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTE----EEEEEHH
T ss_pred CcceEEECCCCeEEEEEecCCc----EEEEEhh
Confidence 6889999999965566777776 4445544
No 256
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.70 E-value=1.3e-06 Score=82.49 Aligned_cols=153 Identities=14% Similarity=0.053 Sum_probs=86.0
Q ss_pred cceEEEEEEc--CCEEEEee--CCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEe--cCCE
Q psy18018 81 DHVITCLQFS--GSRIVSGS--DDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKL 154 (635)
Q Consensus 81 ~~vi~~~~~s--~~~l~s~~--~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~ 154 (635)
..+ ..++++ |+.+++.. .++.++||.+.+++ +.-|- ... ....+|...+.++++ ++++
T Consensus 17 ~~p-~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-----------~~~~p--~~~--~~~~~~~~~p~gv~~d~~g~L 80 (343)
T 2qe8_A 17 LAP-GNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-----------LIPFP--PQS--GNAIITFDTVLGIKSDGNGIV 80 (343)
T ss_dssp SCE-EEEEECTTSCEEEEECGGGCCSCSEEEEETTE-----------EEESC--CCC--SSCCCCCSCEEEEEECSSSEE
T ss_pred CCc-ceEEECCCCCEEEEeCCCCCCceEEEEECCCC-----------eecCC--Ccc--cCcccceeEeeEEEEcCCCcE
Confidence 445 889998 78888754 23435666543332 22110 000 012246678899999 4444
Q ss_pred EEEEeC-----CCeEEEEeCCCccceeeccccc------e-eEEeeeccCCCEEEEEe----CCCcEEEEECCCCeEEEE
Q psy18018 155 VVSGAY-----DYMVKIWNPDTEECLHAELQET------E-VELSHGYALRSRIVSGS----DDNTLKVWSATTGKCLRT 218 (635)
Q Consensus 155 l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~------~-~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~ 218 (635)
.++-.. ++.|.+||+.+++.+..+.... . .......+.++.++.+. .++.|.+||+.+++..+.
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 444333 5799999999888655443211 1 11122222344554443 578999999998888777
Q ss_pred EeCCCCCe---EEEEeeCCEEEEeeCceeEEEec
Q psy18018 219 LIGHTGGV---WSSQMAGNIIISGSTDRTLKGWS 249 (635)
Q Consensus 219 ~~~h~~~v---~~~~~~~~~l~s~~~dg~i~~w~ 249 (635)
+.+|.... ..+..++..+.+.+.+|.++.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 194 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH 194 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCC
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceecee
Confidence 76553211 12233455566666677666553
No 257
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.67 E-value=0.001 Score=72.54 Aligned_cols=173 Identities=14% Similarity=0.174 Sum_probs=100.9
Q ss_pred CcEEEEeCCCCceeeeeccCC-ccEEEEE---ec---CCEEEEEe----------CCCcEEEEECCCCceeEEecCCCcc
Q psy18018 436 TSIRVWEAESGNLRHTLMGHQ-SLTSGME---LR---NNILVSGN----------ADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~~~~~-~~v~~~~---~~---~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
+.+++.|..+.+.+..+.-.. ..+.++. +. ..++++|. ..|.|++|++.+++ +..+.. ...
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~-~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAE-KEV 884 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEE-EEE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEE-EEc
Confidence 347777877777665554322 2334443 32 35888876 35789999987443 332221 125
Q ss_pred cccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 499 QSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 499 ~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
.+++++++- +|++++.. ..++++|++...+.+. .... .+. .|..+.....+.++++|+.-..|.+.
T Consensus 885 ~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~---------~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~ 951 (1158)
T 3ei3_A 885 KGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELR-TECN---------HYN-NIMALYLKTKGDFILVGDLMRSVLLL 951 (1158)
T ss_dssp SSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEE-EEEE---------ECC-CSCEEEEEEETTEEEEEESSBCEEEE
T ss_pred CCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEE-EEee---------ccc-cEEEEEEeccCCEEEEEEhhheEEEE
Confidence 678888886 77555544 4789999998765443 1110 111 13222333357788888877777765
Q ss_pred eC--CCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 578 DV--KTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 578 d~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
.. ..++. ..+.. ......++++.|-.++ .++.+..+|. +.++.+|.
T Consensus 952 ~y~~~~~~L-~~~a~---D~~~~~vta~~~ld~~-t~l~aD~~gN--l~vl~~~~ 999 (1158)
T 3ei3_A 952 AYKPMEGNF-EEIAR---DFNPNWMSAVEILDDD-NFLGAENAFN--LFVCQKDS 999 (1158)
T ss_dssp EEETTTTEE-EEEEE---CCSCBCEEEEEEEETT-EEEEEETTSE--EEEEEECT
T ss_pred EEEcCCCeE-EEEEe---ecccccEEEEEEEccC-cEEEEcCCCc--EEEEecCC
Confidence 44 33333 33321 4456788999987665 5566888887 34444443
No 258
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.61 E-value=8.3e-06 Score=75.49 Aligned_cols=208 Identities=10% Similarity=0.024 Sum_probs=124.6
Q ss_pred CCccccccccceEEEEEecCCCCCCCc-eeecCCcchheeeccceeeeeeecCCCCCCceeeccCcceEEEEEEc--CCE
Q psy18018 17 DPKVLKGHDDHVITCLQFSGKSFPCES-FIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFS--GSR 93 (635)
Q Consensus 17 ~~~~l~gh~~~vi~~~~~s~~~~~~~~-~la~~~~~~~~~~~~~~~~~iwd~~~~~~~~~l~~h~~~vi~~~~~s--~~~ 93 (635)
....|..+.... ...+|+ |+|+ ++.+.... ..+..|+. +++ ...+..+...+ .+++++ |++
T Consensus 36 ~~~~l~~~~~~~-egp~~~----~~g~~l~~~d~~~--------~~i~~~~~-~g~-~~~~~~~~~~~-~gl~~d~dG~l 99 (305)
T 3dr2_A 36 RLLTLYDQATWS-EGPAWW----EAQRTLVWSDLVG--------RRVLGWRE-DGT-VDVLLDATAFT-NGNAVDAQQRL 99 (305)
T ss_dssp CCEEEECCCSSE-EEEEEE----GGGTEEEEEETTT--------TEEEEEET-TSC-EEEEEESCSCE-EEEEECTTSCE
T ss_pred ceEEEecCCcCc-cCCeEe----CCCCEEEEEECCC--------CEEEEEeC-CCC-EEEEeCCCCcc-ceeeECCCCCE
Confidence 445566666666 899999 8998 44444332 23445876 444 45566566656 899999 776
Q ss_pred EEEeeCCCcEEEEECCCCcEE------------------------EEE-----eeC-------------CCcEEEEeCCC
Q psy18018 94 IVSGSDDNTLKVWSATTGKCL------------------------LVS-----GSR-------------DATLRVWHIES 131 (635)
Q Consensus 94 l~s~~~d~~v~vWd~~~~~~l------------------------l~~-----~~~-------------dg~i~vwd~~~ 131 (635)
+++...++.|.+|+.. |+.. +.. |.. .+.|..+|.++
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 6665566789999875 4332 222 211 13455555555
Q ss_pred CeEEEEeeCCCcceEEEEe--cCCEEEEEeCC------CeEEEEeCCCccceee---ccc-cceeEEeeeccCCCEEEEE
Q psy18018 132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYD------YMVKIWNPDTEECLHA---ELQ-ETEVELSHGYALRSRIVSG 199 (635)
Q Consensus 132 ~~~~~~l~~h~~~v~~l~~--~~~~l~s~~~d------g~v~iwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~ 199 (635)
++..... +......++| |++.|+.+... +.|.+|++..+. +.. +.. ............+..|.++
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~ 255 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS 255 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence 5433322 3344567888 78878777665 789999987543 111 000 0111112223334457777
Q ss_pred eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe--eCCEEEEeeCceeEEE
Q psy18018 200 SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM--AGNIIISGSTDRTLKG 247 (635)
Q Consensus 200 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~~~dg~i~~ 247 (635)
+.+ .|.+|+. +++.+..+..+. .+..++| +++.|+.++.++..++
T Consensus 256 ~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 256 SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 655 4999997 577777776555 5778888 4667777777765444
No 259
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.60 E-value=2.8e-05 Score=72.55 Aligned_cols=185 Identities=10% Similarity=-0.018 Sum_probs=106.7
Q ss_pred EeeCC-cEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCC-c
Q psy18018 422 CLFDG-VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRN-K 497 (635)
Q Consensus 422 ~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~ 497 (635)
+++++ ..+++...++.|..||..+++... +. ....+.++.++ +++++ ++.+ .|.+||..+++......... .
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~~~~~~ 131 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDL 131 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEeeCCCCC
Confidence 34543 334444556778888887665432 22 23467777763 44554 4444 49999998877543322111 1
Q ss_pred ccccEEEEEe--cCCEEEEEeC------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-
Q psy18018 498 HQSAVTCLQF--NSRFVITSSD------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS- 568 (635)
Q Consensus 498 ~~~~v~~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 568 (635)
....+..+++ +|+++++... .+.|..++ +++... +.. .......++|+||++.|+.+
T Consensus 132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~-----------~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA-----------DISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE-----------EESSEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC-----------CCcccCCeEEcCCCCEEEEEE
Confidence 1245777888 4676655432 24455555 443221 111 12345678999999866544
Q ss_pred cCCCeEEEEeCC--CC-ceE--EeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 569 SDDGTVKLWDVK--TG-EFI--RNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 569 ~~d~~v~iwd~~--~~-~~~--~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+.++.|.+||+. ++ +.. ..+... .........++++++|.+.++...++. |+.+|.
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~--~~~~~~p~gi~~d~~G~lwva~~~~~~----v~~~d~ 258 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDS--TGIKGGMDGSVCDAEGHIWNARWGEGA----VDRYDT 258 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEEC--TTSSSEEEEEEECTTSCEEEEEETTTE----EEEECT
T ss_pred CCCCEEEEEEcccccCCcccCceEEEEC--CCCCCCCCeeEECCCCCEEEEEeCCCE----EEEECC
Confidence 567899999986 55 321 112111 223456788999999987776655554 666665
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.52 E-value=1.1e-05 Score=83.54 Aligned_cols=260 Identities=10% Similarity=0.095 Sum_probs=146.7
Q ss_pred eEEEEe-cCcEEEEecCCC-----------eEEEEEccCCceE--EeeeC-CCcceeEEEE--eCCEEEEEeC-CCcEEE
Q psy18018 346 LFGFQF-DGVHVVSGSLDT-----------SIRVWEAESGNLR--HTLMG-HQSLTSGMEL--RNNILVSGNA-DSTVKV 407 (635)
Q Consensus 346 ~~~~s~-~~~~l~~~~~dg-----------~i~v~~~~~~~~~--~~~~~-~~~~v~~l~~--~~~~l~s~~~-dg~i~i 407 (635)
..++.+ +++.++.|+.+. .+.+||..+++-. ..+.. +.....+.++ ++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 455677 888888876532 5889998876532 22222 2233333443 4778888874 468999
Q ss_pred EEccCCcceeE---------E-EEEeeCCcEEEEEe-CC-----CcEEEEeCCCCceeee-------eccCCccEEEEEe
Q psy18018 408 WDIVSGTKKLM---------F-RICLFDGVHVVSGS-LD-----TSIRVWEAESGNLRHT-------LMGHQSLTSGMEL 464 (635)
Q Consensus 408 wd~~~~~~~~~---------~-~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~~ 464 (635)
||..+.+.... . ....++++.++.|+ .+ ..+.+||..+++.... +...... ..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeec
Confidence 99876542221 1 12335899999988 34 5789999987654332 0000000 01112
Q ss_pred cCCEEEEEeCC---------CcEEEEECCCCceeEEecCCCc------ccccEEEEE---ecCCEEEEEeCCC-------
Q psy18018 465 RNNILVSGNAD---------STVKVWDIVSGQCLQTLSGRNK------HQSAVTCLQ---FNSRFVITSSDDG------- 519 (635)
Q Consensus 465 ~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~---~~~~~l~~~~~d~------- 519 (635)
++..++.++.+ ..+..||..+............ ....-.++. .++++++.|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 34444555444 3567888877654433322110 011223343 3688888888543
Q ss_pred ----cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----------CeEEEEeCCCCce
Q psy18018 520 ----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----------GTVKLWDVKTGEF 584 (635)
Q Consensus 520 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~v~iwd~~~~~~ 584 (635)
.+.+||..+.+......... .....-.+++..|++++++.|+.+ ..+.+||..+++.
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~m--------p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGL--------YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCC--------SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CcceEEEcCCCCCCCeeEEccCCC--------CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 57788887766443220000 011112234566899999999854 5689999988775
Q ss_pred EEeeeeccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018 585 IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSR 617 (635)
Q Consensus 585 ~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~ 617 (635)
.. +.... ..........+.|||++++.|+.
T Consensus 501 ~~-~~~~~--~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 501 YK-QNPNS--IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EE-CCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred ee-cCCCC--CccccccHhhcCCCcEEEecCCC
Confidence 43 21111 11122234456799999999985
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.50 E-value=0.00029 Score=63.54 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=131.5
Q ss_pred cEEEEecCCCeEEEEEccCCceE-----EeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEccCCcceeE-------
Q psy18018 354 VHVVSGSLDTSIRVWEAESGNLR-----HTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIVSGTKKLM------- 418 (635)
Q Consensus 354 ~~l~~~~~dg~i~v~~~~~~~~~-----~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~------- 418 (635)
.+|+.+.. +.|+.+++...... ..+........+++++ ++.|+ +-...+.|..+++........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 47888887754321 1122223456788887 34444 445578899999876543211
Q ss_pred --EEEEeeCCcEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeC---CCcEEEEECCCCceeE
Q psy18018 419 --FRICLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNA---DSTVKVWDIVSGQCLQ 490 (635)
Q Consensus 419 --~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~ 490 (635)
...+.+++..++.+ ...+.|.++++..................++++ +..|..+.. .+.|..+++.. ....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence 12245555555544 456789999886443222222222345667775 355555443 36788888763 3333
Q ss_pred EecCCCcccccEEEEEec--CCEE-EEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018 491 TLSGRNKHQSAVTCLQFN--SRFV-ITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567 (635)
Q Consensus 491 ~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 567 (635)
.+... .......++++ +..| ++-...+.|.++|............ ......+++. ++.++++
T Consensus 160 ~~~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------~~~P~gi~~d-~~~lyva 224 (267)
T 1npe_A 160 ILAQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------LQYPFAVTSY-GKNLYYT 224 (267)
T ss_dssp EEECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------------CCSEEEEEEE-TTEEEEE
T ss_pred EEEEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------------CCCceEEEEe-CCEEEEE
Confidence 33211 22345667773 5555 4455568899999875432221110 1122344543 4555555
Q ss_pred ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCe
Q psy18018 568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKL 610 (635)
Q Consensus 568 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 610 (635)
...++.|.++|..+++.+..+.. +.......+++.|++-
T Consensus 225 ~~~~~~v~~~d~~~g~~~~~i~~----g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 225 DWKTNSVIAMDLAISKEMDTFHP----HKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEECC----SSCCCCCCEEEECSCC
T ss_pred ECCCCeEEEEeCCCCCceEEEcc----ccccccceeeecCccC
Confidence 55678999999999998888742 2122356777777763
No 262
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.47 E-value=1.3e-05 Score=75.40 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=115.0
Q ss_pred CCcEEEE-EeCCCcEEEEeCCCC----ceeeeecc-------CCccEEE--EEecCCEEEEEeCC------CcEEEEECC
Q psy18018 425 DGVHVVS-GSLDTSIRVWEAESG----NLRHTLMG-------HQSLTSG--MELRNNILVSGNAD------STVKVWDIV 484 (635)
Q Consensus 425 ~~~~l~~-~~~d~~i~~~d~~~~----~~~~~~~~-------~~~~v~~--~~~~~~~l~s~~~d------g~i~iwd~~ 484 (635)
++++|++ +..+++|+++|+.+. +...++.. ....-.. +.+++ +++++..+ |.+.++|..
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 4444444 445677888887654 45555520 0111111 22345 66666555 789999999
Q ss_pred CCceeEEecCCCcccccEEEE--EecCCEEEEEe-------------------CCCcEEEEECCCCceeeeeccceecCc
Q psy18018 485 SGQCLQTLSGRNKHQSAVTCL--QFNSRFVITSS-------------------DDGTVKLWDVKTGEFSTPLMSSFILNP 543 (635)
Q Consensus 485 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 543 (635)
+++.+..+........--..+ ..+++.+++.. .+.+|.+||+.+++.+..+.... .
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---~ 249 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---E 249 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT---T
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC---C
Confidence 999999887421111112224 34678888774 36889999999987666654320 0
Q ss_pred eeEEeccCceec--ccccCCCeEEEEec------CCCeEEEEeCCCCceEEeeeec--cCC---C-----------CCce
Q psy18018 544 FYFLIYSQPLLC--PHLQFNSRFVITSS------DDGTVKLWDVKTGEFIRNLVSL--DSG---G-----------SGGV 599 (635)
Q Consensus 544 ~~~~~~~~~v~~--~~~s~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~--~~~---~-----------~~~~ 599 (635)
...... ++|+|+++++.+++ .+++|.+|....++.- ....+ ... + ....
T Consensus 250 ------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 250 ------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp ------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred ------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCc
Confidence 011222 45699999888877 4568888776654321 11111 000 0 0245
Q ss_pred EEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 600 VWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 600 i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
...+.+|+||++|.++..... .|.+||.+
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d---~VavfdV~ 351 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIG---EVRQYDIS 351 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTT---EEEEEECS
T ss_pred eeEEEECCCCCEEEEEeCCCC---EEEEEEec
Confidence 788999999999988877543 36666654
No 263
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.42 E-value=0.0024 Score=64.86 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=95.2
Q ss_pred CCCcEEEEeCCCCceeee-ec-cCCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018 434 LDTSIRVWEAESGNLRHT-LM-GHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN 508 (635)
Q Consensus 434 ~d~~i~~~d~~~~~~~~~-~~-~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 508 (635)
..+.|+..++........ +. ..-..+.+++++. + ++++-...+.|+.+++........+.. .......+++|
T Consensus 324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~---~~~~p~GlAvD 400 (619)
T 3s94_A 324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA---QIAHPDGIAVD 400 (619)
T ss_dssp ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---SCSCCCEEEEE
T ss_pred cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC---CCCCcCceEEe
Confidence 345667677665432111 11 1123456777763 4 444444577888888875433333322 22234456664
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEe-cCCCeEEEEeCCCCc
Q psy18018 509 ---SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITS-SDDGTVKLWDVKTGE 583 (635)
Q Consensus 509 ---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-~~d~~v~iwd~~~~~ 583 (635)
++++++-+..+.|.+.++.... ...+... .-.....+++.|. |.+.++- +....|...++. |.
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~----------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~ 468 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNGTM-RKILISE----------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GS 468 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS-CEEEECT----------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred cccCcEEEEeCCCCcEEEEeCCCCe-EEEEEEC----------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CC
Confidence 4555565667889999887543 2222111 1234678889986 5544443 223667777765 33
Q ss_pred eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 584 FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 584 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
....+. ...-.....|++++++..|..+..... +|+.+|++.
T Consensus 469 ~~~~l~----~~~l~~P~GlalD~~~~~LY~aD~~~~---~I~~~~~dG 510 (619)
T 3s94_A 469 DRVVLV----NTSLGWPNGLALDYDEGKIYWGDAKTD---KIEVMNTDG 510 (619)
T ss_dssp SCEEEE----CSSCSCEEEEEEETTTTEEEEEETTTT---EEEEEESSS
T ss_pred ccEEEE----eCCCCCCeeeEEcccCCEEEEEECCCC---EEEEEecCC
Confidence 223332 122345678999987666665554432 366666643
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.001 Score=61.30 Aligned_cols=227 Identities=10% Similarity=0.003 Sum_probs=118.5
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEe
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICL 423 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 423 (635)
...++++++++.+++-..++.|..||... .....+.. ......++++
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~------------------------------- 80 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFT------------------------------- 80 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEEC-------------------------------
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEc-------------------------------
Confidence 34567888888777766788898888764 33222221 2334455553
Q ss_pred eCCcEEEEEeCC--CcEEEEeCCCCceeeeecc-CCccEEEEE-ecCCE-EEEEeCCCcEEEEECCCCce-eEEec----
Q psy18018 424 FDGVHVVSGSLD--TSIRVWEAESGNLRHTLMG-HQSLTSGME-LRNNI-LVSGNADSTVKVWDIVSGQC-LQTLS---- 493 (635)
Q Consensus 424 ~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~-~~~~v~~~~-~~~~~-l~s~~~dg~i~iwd~~~~~~-~~~~~---- 493 (635)
++++.+++.... ..+..++..+++....... .......+. +.+.. +++-..++.|+.+|...++. +....
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 233322222111 1244444444443221111 111112222 23344 44444578888888765421 11100
Q ss_pred --CCCcccccEEEEEecCCEEE-EEeCCCcEEEEECCC-CceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 494 --GRNKHQSAVTCLQFNSRFVI-TSSDDGTVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 494 --~~~~~~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
...........+..++++|+ +-...+.|..+++.. ++.. ... ..........++++++|++.++..
T Consensus 161 ~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~-~~~---------~~~~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 161 RSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG-EPE---------IFVEQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp CSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC-CCE---------EEEESCCCSSEEEBTTCCEEEECB
T ss_pred cccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC-ccE---------EEeccCCCCCeEECCCCCEEEEeC
Confidence 00011123444567776554 445678899999875 3311 000 000113456789999999888777
Q ss_pred CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC---CCCeEEEEccC
Q psy18018 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS---ETKLVCAVGSR 617 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~d~~~l~~~~~ 617 (635)
..+.|.++|.. ++..... .. .......++++|. ||+..|.+++.
T Consensus 231 ~~~~V~~~~~~-G~~~~~~-~~--~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 231 IYNSVVRIAPD-RSTTIIA-QA--EQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TTCCEEEECTT-CCEEEEE-CG--GGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCeEEEECCC-CCEEEEe-ec--ccccCCceEEEEecccCCCCEEEEECC
Confidence 78899999975 6653211 11 1122457899999 88776665544
No 265
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.31 E-value=0.0011 Score=59.71 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=114.4
Q ss_pred CceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEE-EeCCCcEEEEEccCCccee--
Q psy18018 344 PDLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVS-GNADSTVKVWDIVSGTKKL-- 417 (635)
Q Consensus 344 ~~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s-~~~dg~i~iwd~~~~~~~~-- 417 (635)
+..+++++++..|+ +-..++.|..++...+.....+.........++++ +..++. -...+.|.++++.......
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence 34567888655554 44557899999987655443333333467788886 345544 4556789888886543211
Q ss_pred -------EEEEEeeCCcEEEEEeC---CCcEEEEeCCCCceeeeec-cCCccEEEEEec--CCEE-EEEeCCCcEEEEEC
Q psy18018 418 -------MFRICLFDGVHVVSGSL---DTSIRVWEAESGNLRHTLM-GHQSLTSGMELR--NNIL-VSGNADSTVKVWDI 483 (635)
Q Consensus 418 -------~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~ 483 (635)
.-..+++++..|..+.. .+.|..+++... ....+. .......+++++ ++.| ++-...+.|..+|+
T Consensus 118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 12235666666665554 367888887643 222222 223345667774 4444 55556688999999
Q ss_pred CCCceeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCceeeeecc
Q psy18018 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~ 537 (635)
........+.. ......++.++..|+.+. ..+.|.++|..+++.+..+..
T Consensus 197 ~g~~~~~~~~~----~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 197 AQPGRRKVLEG----LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TEEEEEEEEEC----CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCCceEEEecC----CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 75543333332 122345667666665555 568999999999987776643
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=8.9e-05 Score=76.65 Aligned_cols=214 Identities=11% Similarity=0.047 Sum_probs=121.7
Q ss_pred EEEEecCcEEEEecC-CCeEEEEEccCCceEEeeeCC--CcceeEEEE-eCCEEEEEe-CC-----CcEEEEEccCCcce
Q psy18018 347 FGFQFDGVHVVSGSL-DTSIRVWEAESGNLRHTLMGH--QSLTSGMEL-RNNILVSGN-AD-----STVKVWDIVSGTKK 416 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~~--~~~v~~l~~-~~~~l~s~~-~d-----g~i~iwd~~~~~~~ 416 (635)
.++.++++.++.|+. +..+.+||..+.+-...-..+ .....+... ++.+++.|+ .+ ..+.+||..+.+..
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 456678898888884 468999998876543322222 222334445 577888887 34 46899998876533
Q ss_pred eEE-----E--------EEeeCCcEEEEEeCCC---------cEEEEeCCCCceeeeeccCCc---------cEEEEE--
Q psy18018 417 LMF-----R--------ICLFDGVHVVSGSLDT---------SIRVWEAESGNLRHTLMGHQS---------LTSGME-- 463 (635)
Q Consensus 417 ~~~-----~--------~~~~~~~~l~~~~~d~---------~i~~~d~~~~~~~~~~~~~~~---------~v~~~~-- 463 (635)
... . .+..++..++.++.++ .+..||..+.........+.. .-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~ 407 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 407 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEecc
Confidence 210 0 0113445555565443 467788877654333222211 123333
Q ss_pred -ecCCEEEEEeCCC-----------cEEEEECCCCceeEEe--cCCCcccccEEEEEe-cCCEEEEEeCC----------
Q psy18018 464 -LRNNILVSGNADS-----------TVKVWDIVSGQCLQTL--SGRNKHQSAVTCLQF-NSRFVITSSDD---------- 518 (635)
Q Consensus 464 -~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~-~~~~l~~~~~d---------- 518 (635)
.++++++.|+.++ .+.+||..+.+-.... ..+. ......++.. ++++++.|+.+
T Consensus 408 ~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~-~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF-ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS-CCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC-CcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 2567888887543 6788888776544332 1111 1222333444 89999999864
Q ss_pred -CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018 519 -GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570 (635)
Q Consensus 519 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 570 (635)
..+.+||..+.+....-.. +.. .....+..+.||+++++.|+.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~-----~~~----R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPN-----SIV----RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCC-----SSC----CCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCC-----CCc----cccccHhhcCCCcEEEecCCC
Confidence 4689999887654331111 000 111123345689999999885
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.13 E-value=0.0021 Score=59.68 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=76.6
Q ss_pred CCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEE-eCCCcEEEEECCCCceeeeeccceecCceeEEeccC
Q psy18018 475 DSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITS-SDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ 551 (635)
Q Consensus 475 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (635)
++.|..+|..+++....... ......+++ +++.|+.+ +.++.|.+|++...... .... + .....
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~------~--~~~~g 230 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEV------L--VKIPN 230 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEE------E--EECSS
T ss_pred CceEEEEeCCCCEEEEeccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccce------E--EeCCC
Confidence 36688888766654322221 112234566 56755555 55688999998753210 0000 0 00112
Q ss_pred ceecccccCCCeEEEEecC----------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee
Q psy18018 552 PLLCPHLQFNSRFVITSSD----------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE 621 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~ 621 (635)
...++++++|++.++... .+.|..+|. +++.+..+..... ..-..++.+++ .++++.++...++.
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g-~~~~~~~~~~~-~~g~L~v~~~~~~~- 305 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPP-FAGEHFEQIQE-HDGLLYIGTLFHGS- 305 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTT-TTTSCCCEEEE-ETTEEEEECSSCSE-
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCC-CccccceEEEE-eCCEEEEeecCCCc-
Confidence 566889999987776544 467888886 4777766642111 11244666766 46776666656665
Q ss_pred EeEEEEEeeec
Q psy18018 622 ETKLLVLDFDV 632 (635)
Q Consensus 622 ~~~l~~~d~~~ 632 (635)
|..++++.
T Consensus 306 ---i~~~~~~~ 313 (322)
T 2fp8_A 306 ---VGILVYDK 313 (322)
T ss_dssp ---EEEEEC--
T ss_pred ---eEEEeccc
Confidence 66666543
No 268
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.04 E-value=0.016 Score=58.90 Aligned_cols=156 Identities=5% Similarity=-0.036 Sum_probs=85.7
Q ss_pred ccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCC---cccccEEEEEec---CCEEEEEeCCCcEEEEECC
Q psy18018 457 SLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRN---KHQSAVTCLQFN---SRFVITSSDDGTVKLWDVK 527 (635)
Q Consensus 457 ~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~ 527 (635)
..+.++.++. + ++.+=...+.|+.+++........+.... .....+..+++| +++.++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 3466777753 3 44444456778888776433222222100 012346677775 4455666677889999886
Q ss_pred CCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCC--eEEEEeCCCCceEEeeeeccCCCCCceEEEEE
Q psy18018 528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDG--TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR 604 (635)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 604 (635)
|+....+... .......+++.| .|.+..+-.... .|...++. |.....+. ...-.....|+
T Consensus 420 -G~~~~~l~~~----------~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~----~~~l~~P~gla 483 (628)
T 4a0p_A 420 -GRSVGVVLKG----------EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLF----FSGLSKPIALA 483 (628)
T ss_dssp -SCEEEEEEEC----------TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEE----CSSCSCEEEEE
T ss_pred -CCeEEEEEeC----------CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEE----eccCCCccEEE
Confidence 4433333211 124567889999 566655533333 56666665 43333332 11233468899
Q ss_pred eCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 605 ASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 605 ~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+++++..|..+..... +|+.+|++
T Consensus 484 ~D~~~~~LYw~D~~~~---~I~~~~~d 507 (628)
T 4a0p_A 484 LDSRLGKLFWADSDLR---RIESSDLS 507 (628)
T ss_dssp EETTTTEEEEEETTTT---EEEEEETT
T ss_pred EeCCCCEEEEEeCCCC---EEEEEeCC
Confidence 9998766665544322 36666654
No 269
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.98 E-value=0.0014 Score=59.66 Aligned_cols=190 Identities=11% Similarity=0.178 Sum_probs=111.5
Q ss_pred eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEe------cCC---EEEEEeC---CCcEEEEECC-CCceeE
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL------RNN---ILVSGNA---DSTVKVWDIV-SGQCLQ 490 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~------~~~---~l~s~~~---dg~i~iwd~~-~~~~~~ 490 (635)
|....++.....+-+.+||+ +|+.++.+.. +.++.+.. .++ ++++... +++|.+|++. ....+.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 34455666677788999999 7888888764 34444443 232 2333333 5789999763 222355
Q ss_pred EecCC--C--cccccEEEEEe--c---CC-EEEEEeCCCcEEEEECC---CCceeeeeccceecCceeEEeccCceeccc
Q psy18018 491 TLSGR--N--KHQSAVTCLQF--N---SR-FVITSSDDGTVKLWDVK---TGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557 (635)
Q Consensus 491 ~~~~~--~--~~~~~v~~~~~--~---~~-~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 557 (635)
.+... . .....+..+++ + ++ ++++...+|.+..|++. .+....++.. .+.....+..+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR--------~f~lgsq~Egcv 186 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR--------AFKMNSQTEGMA 186 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE--------EEECSSCEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE--------EecCCCCcceEE
Confidence 54221 0 01133344444 3 43 68888889999999983 3322222222 122345677888
Q ss_pred ccCCCeEEEEecCCCeEEEEeCC-----CCceEEeeeeccCCCCCceEEEEEe--CCCCe-EEEEcc-CCCeeEeEEEEE
Q psy18018 558 LQFNSRFVITSSDDGTVKLWDVK-----TGEFIRNLVSLDSGGSGGVVWRIRA--SETKL-VCAVGS-RNGTEETKLLVL 628 (635)
Q Consensus 558 ~s~~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~~~~~~~~~i~~l~~--s~d~~-~l~~~~-~dg~~~~~l~~~ 628 (635)
..+....|..+-++.-|..+|.+ +++.+..+. .......+..|+. .++++ +|++.+ .+.+ +-+|
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~---~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s----~~Vy 259 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD---GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS----YAIY 259 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS---SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE----EEEE
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec---CCccccCcceEEEEecCCCCEEEEEEcCCCCE----EEEE
Confidence 88888899999998766666644 344554431 1233346888887 56666 666555 4444 6666
Q ss_pred eee
Q psy18018 629 DFD 631 (635)
Q Consensus 629 d~~ 631 (635)
|.+
T Consensus 260 dr~ 262 (355)
T 3amr_A 260 DRQ 262 (355)
T ss_dssp ESS
T ss_pred ECC
Confidence 665
No 270
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.85 E-value=0.0063 Score=55.81 Aligned_cols=222 Identities=14% Similarity=0.217 Sum_probs=125.5
Q ss_pred cCcEEEEec-CC-----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeCC-----CcEEEEEccCCc---c
Q psy18018 352 DGVHVVSGS-LD-----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGT---K 415 (635)
Q Consensus 352 ~~~~l~~~~-~d-----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~d-----g~i~iwd~~~~~---~ 415 (635)
++..++.|+ .+ ..+..||..+.+-... +............++.+++.|+.+ ..+.+||+.+.+ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 445566666 32 3688899876653221 122122223334456666777654 468889988766 3
Q ss_pred eeE---------EEEEeeCCcEEEEEeCC-----CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC----
Q psy18018 416 KLM---------FRICLFDGVHVVSGSLD-----TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD---- 475 (635)
Q Consensus 416 ~~~---------~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d---- 475 (635)
... ......+++.++.|+.+ ..+.+||+.+.+-.. .+........+...++.+++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 173 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI 173 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc
Confidence 222 11233467777777644 358889988765332 2222222233444577777777754
Q ss_pred -CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018 476 -STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549 (635)
Q Consensus 476 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 549 (635)
..+.+||+.+.+-... ...........++..++++++.|+.+ ..+.+||..+.+........ .
T Consensus 174 ~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~------- 242 (301)
T 2vpj_A 174 LNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT---T------- 242 (301)
T ss_dssp CCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS---S-------
T ss_pred cceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC---C-------
Confidence 4588999887654332 21111222334455688888888764 46899999887654322110 0
Q ss_pred cCceecccccCCCeEEEEecCC-----CeEEEEeCCCCceE
Q psy18018 550 SQPLLCPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFI 585 (635)
Q Consensus 550 ~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~ 585 (635)
......+...++++++.|+.+ ..+.+||+++.+..
T Consensus 243 -~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 243 -PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp -CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred -cccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 001111122378888888765 46889999887653
No 271
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.85 E-value=0.003 Score=57.93 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=109.9
Q ss_pred EeeCCcEEEEEeCC-----CcEEEEeCCCCc---eee--eeccCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCC
Q psy18018 422 CLFDGVHVVSGSLD-----TSIRVWEAESGN---LRH--TLMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSG 486 (635)
Q Consensus 422 ~~~~~~~l~~~~~d-----~~i~~~d~~~~~---~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 486 (635)
...++..++.|+.+ ..+.+||..+.+ -.. .+........+...++.+++.|+.+ ..+.+||+.+.
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCC
Confidence 44567777777755 468899988765 322 2222222333444567777777654 35889998876
Q ss_pred ceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN 561 (635)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 561 (635)
+-...-..+. ......++..++++++.|+.+ ..+.+||..+.+........ .+ .....+...+
T Consensus 139 ~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~--------r~~~~~~~~~ 206 (301)
T 2vpj_A 139 QWSMLGDMQT-AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TK--------RSGAGVALLN 206 (301)
T ss_dssp EEEEEEECSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS---SC--------CBSCEEEEET
T ss_pred eEEECCCCCC-CcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC---cc--------cccceEEEEC
Confidence 5333221111 222334445588888888765 45889999887654331110 00 0011112237
Q ss_pred CeEEEEecCC-----CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018 562 SRFVITSSDD-----GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD 633 (635)
Q Consensus 562 ~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~ 633 (635)
+++++.|+.+ ..+.+||+.+.+....- ..+. +. .....+. -++++++.|+.++. ..-.++.||++.+
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~-~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-SMTT-PR-CYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-CCSS-CC-BSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECC-CCCC-cc-cceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7888888764 46899999988764332 1111 11 1112222 26788888876653 2246888888654
No 272
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.80 E-value=0.0065 Score=55.87 Aligned_cols=181 Identities=10% Similarity=0.107 Sum_probs=98.1
Q ss_pred CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC------CcEEEEECCCCceeEEecCCCcccccEEEEEe
Q psy18018 436 TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 507 (635)
..+..||..+.+-.. .+........+...++.+++.|+.+ ..+.+||+.+.+-...-..+. ......++..
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~ 148 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEA 148 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEEE
Confidence 456677776654322 1221122223344567777777765 458999998765333211111 2223344556
Q ss_pred cCCEEEEEeC---------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----Ce
Q psy18018 508 NSRFVITSSD---------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GT 573 (635)
Q Consensus 508 ~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~ 573 (635)
++++++.|+. -..+.+||..+.+........ . ......+..-++++++.|+.+ ..
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~--------~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI---E--------ARKNHGLVFVKDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS---S--------CCBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc---c--------hhhcceEEEECCEEEEEeCCCCCCCCce
Confidence 7888787764 345889999887644322110 0 001111122277888887754 46
Q ss_pred EEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018 574 VKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD 633 (635)
Q Consensus 574 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~ 633 (635)
+.+||+.+.+....- ..+. .......+.+ ++++++.|+.++. ..-.++.||++.+
T Consensus 218 ~~~yd~~~~~W~~~~-~~p~--~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVS-PMPW--KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEETTTTEEEECC-CCSC--CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEeeCCCCcEEECC-CCCC--CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 899999987654332 1111 1112222223 7788888886543 2346888888754
No 273
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.80 E-value=0.01 Score=54.36 Aligned_cols=223 Identities=15% Similarity=0.210 Sum_probs=123.8
Q ss_pred cCcEEEEecCC----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeCC-----CcEEEEEccCCcceeE--
Q psy18018 352 DGVHVVSGSLD----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGTKKLM-- 418 (635)
Q Consensus 352 ~~~~l~~~~~d----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~-- 418 (635)
++..++.|+.+ ..+..||..+.+-... +......-......+.+++.|+.+ ..+..||..+.+....
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 34556666643 3578888876653221 111111222333446666666654 3577888776542221
Q ss_pred -------EEEEeeCCcEEEEEeCCC-----cEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCC-------Cc
Q psy18018 419 -------FRICLFDGVHVVSGSLDT-----SIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD-------ST 477 (635)
Q Consensus 419 -------~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-------g~ 477 (635)
......+++.++.|+.++ .+.+||+.+.+-... +........+...++.+++.|+.+ ..
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST 174 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence 122344777777777653 577888877653322 222222233444567777777643 35
Q ss_pred EEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCc
Q psy18018 478 VKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP 552 (635)
Q Consensus 478 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (635)
+.+||+.+.+-...-..+. ......++..++++++.|+.+ ..+.+||..+.+........ .+ .
T Consensus 175 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~--------r 242 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMST-RRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN---MC--------R 242 (302)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS---SC--------C
T ss_pred EEEEeCCCCcEEECCCCcc-ccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC---Cc--------c
Confidence 8899998765333211111 222334455688888888765 36889999887644322110 00 0
Q ss_pred eecccccCCCeEEEEecCCC-----eEEEEeCCCCceEE
Q psy18018 553 LLCPHLQFNSRFVITSSDDG-----TVKLWDVKTGEFIR 586 (635)
Q Consensus 553 v~~~~~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~ 586 (635)
....+...++++++.|+.++ .+.+||+.+.+...
T Consensus 243 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 01111223788888887653 58999999887543
No 274
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.78 E-value=0.0032 Score=57.84 Aligned_cols=195 Identities=14% Similarity=0.183 Sum_probs=108.3
Q ss_pred EeeCCcEEEEEeCC-----CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCCC-----cEEEEECCCCcee
Q psy18018 422 CLFDGVHVVSGSLD-----TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNADS-----TVKVWDIVSGQCL 489 (635)
Q Consensus 422 ~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 489 (635)
...++..++.|+.+ ..+..||..+.+-.. .+........+...++.+++.|+.++ .+.+||+.+.+-.
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 33467777777754 358889988765332 22222222334445777788887653 4788898876533
Q ss_pred EEecCCCcccccEEEEEecCCEEEEEeCC-------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCC
Q psy18018 490 QTLSGRNKHQSAVTCLQFNSRFVITSSDD-------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNS 562 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 562 (635)
..-..+ .......+...++++++.|+.+ ..+.+||..+.+....-... .+ .-...+...++
T Consensus 138 ~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~--------r~~~~~~~~~~ 205 (302)
T 2xn4_A 138 HVAPMN-TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS---TR--------RSGAGVGVLNN 205 (302)
T ss_dssp EECCCS-SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS---SC--------CBSCEEEEETT
T ss_pred ecCCCC-CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc---cc--------cccccEEEECC
Confidence 321111 1222334455678888877643 35889999887644321110 00 00011112278
Q ss_pred eEEEEecCC-----CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018 563 RFVITSSDD-----GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD 633 (635)
Q Consensus 563 ~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~ 633 (635)
++++.|+.+ ..+.+||+.+.+....- .... .... ...+. .++++++.|+.++. ..-.++.||++.+
T Consensus 206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~-~r~~-~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA-DMNM-CRRN-AGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEEECCBSSSSBCCCEEEEETTTTEEEEEC-CCSS-CCBS-CEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEECCCCCCcccceEEEEeCCCCCEeeCC-CCCC-cccc-CeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 888888764 46999999887654332 2111 1111 11222 36788888887653 1235788887654
No 275
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.01 Score=54.15 Aligned_cols=198 Identities=9% Similarity=0.252 Sum_probs=111.3
Q ss_pred cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431 (635)
Q Consensus 352 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~ 431 (635)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-+.+-+ + .+.+-+ -+++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l-~--g~~~dl--------------------a~as 92 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPL-N--GKKVDI--------------------AAAS 92 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEE-T--TEEEEE--------------------EEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccccc-C--CceEeE--------------------EEEe
Confidence 4455666667788999999 7888887754 44555544322100 0 000000 0111
Q ss_pred EeC--CCcEEEEeC--CCCceeeeecc------CC-ccEEEEEe--c---CC-EEEEEeCCCcEEEEECC-------CCc
Q psy18018 432 GSL--DTSIRVWEA--ESGNLRHTLMG------HQ-SLTSGMEL--R---NN-ILVSGNADSTVKVWDIV-------SGQ 487 (635)
Q Consensus 432 ~~~--d~~i~~~d~--~~~~~~~~~~~------~~-~~v~~~~~--~---~~-~l~s~~~dg~i~iwd~~-------~~~ 487 (635)
... +++|.+|++ .+++ +..+.. .. ..+..+++ + +. ++++...+|.+..|++. +.+
T Consensus 93 ~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 93 NRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK 171 (355)
T ss_dssp ECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence 222 355666644 2222 222211 11 23333443 3 33 68888889999999883 345
Q ss_pred eeEEecCCCcccccEEEEEec--CCEEEEEeCCCcEEEEECC-----CCceeeeeccceecCceeEEeccCceecccc--
Q psy18018 488 CLQTLSGRNKHQSAVTCLQFN--SRFVITSSDDGTVKLWDVK-----TGEFSTPLMSSFILNPFYFLIYSQPLLCPHL-- 558 (635)
Q Consensus 488 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 558 (635)
.++++.. .+.+..+..| ...|+.+-++.-|..++.+ +++.+..+... .....+..|++
T Consensus 172 lVR~f~l----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g---------~l~aDvEGLai~~ 238 (355)
T 3amr_A 172 KVRAFKM----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------HLTRDIEGLTIYY 238 (355)
T ss_dssp EEEEEEC----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS---------SBCSCEEEEEEEE
T ss_pred EEEEecC----CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCC---------ccccCcceEEEEe
Confidence 6677764 3456667775 5789999888777777755 22333322111 01234666666
Q ss_pred cCCCe-EEEEec-CCCeEEEEeCC-CCceEEeee
Q psy18018 559 QFNSR-FVITSS-DDGTVKLWDVK-TGEFIRNLV 589 (635)
Q Consensus 559 s~~~~-~l~~~~-~d~~v~iwd~~-~~~~~~~~~ 589 (635)
.++++ ||++++ .++++.+||.+ +.+.+..+.
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 44554 555544 67899999997 788888875
No 276
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.72 E-value=0.0046 Score=57.18 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=86.5
Q ss_pred EEecCCEEEEEeCC--------CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeC-C-----CcEEEEECC
Q psy18018 462 MELRNNILVSGNAD--------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD-D-----GTVKLWDVK 527 (635)
Q Consensus 462 ~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-d-----~~i~vwd~~ 527 (635)
...++.+++.|+.+ ..+.+||+.+.+-.. +...........++..++++++.|+. + ..+.+||..
T Consensus 95 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 95 GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCC
Confidence 34466677777632 458899998765322 22111122333445568888888876 2 468999998
Q ss_pred CCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCC-----eEEEEeCCCCceEEeeeeccCCCCCceEEE
Q psy18018 528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDG-----TVKLWDVKTGEFIRNLVSLDSGGSGGVVWR 602 (635)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 602 (635)
+.+........ . ......+..-++++++.|+.++ .+.+||+.+.+....- ..+. +. .....
T Consensus 174 ~~~W~~~~~~p---~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~-~r-~~~~~ 239 (315)
T 4asc_A 174 KFEWKELAPMQ---T--------ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE-AFPQ-ER-SSLSL 239 (315)
T ss_dssp TTEEEECCCCS---S--------CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC-CCSS-CC-BSCEE
T ss_pred CCeEEECCCCC---C--------chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC-CCCC-cc-cceeE
Confidence 87644322110 0 0011111222778888887654 5889999887654432 1111 11 11122
Q ss_pred EEeCCCCeEEEEccCCC----------eeEeEEEEEeeecC
Q psy18018 603 IRASETKLVCAVGSRNG----------TEETKLLVLDFDVD 633 (635)
Q Consensus 603 l~~s~d~~~l~~~~~dg----------~~~~~l~~~d~~~~ 633 (635)
+. -++++++.|+.++ ...-.+|.||++.+
T Consensus 240 ~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 240 VS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 22 2678888888753 23456889988764
No 277
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00049 Score=63.01 Aligned_cols=199 Identities=10% Similarity=0.100 Sum_probs=109.7
Q ss_pred CcEEEEecCCCeEEEEEccCCceEEeeeCCC-cceeEEEEeCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018 353 GVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431 (635)
Q Consensus 353 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~-~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~ 431 (635)
+..+++++.||.|.-+|..+|+.+..++... .++....-... ..++..++.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~----------------------------~~~~~~~vv 61 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR----------------------------LETYETLII 61 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT----------------------------TTSSEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc----------------------------ccCCcEEEE
Confidence 6789999999999999999999998887651 11111100000 001122222
Q ss_pred E-eCCCcEEEEeCCCCceeeeecc----CCccEEE---EEe-------cCCEEEEEeCCCcEEEEECCCCceeEEecCCC
Q psy18018 432 G-SLDTSIRVWEAESGNLRHTLMG----HQSLTSG---MEL-------RNNILVSGNADSTVKVWDIVSGQCLQTLSGRN 496 (635)
Q Consensus 432 ~-~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~---~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 496 (635)
. +.||.+..++..+|.....+.. ..++... ... .+..+++|+.+|.+...|+.+|+.+.++....
T Consensus 62 ~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~ 141 (339)
T 2be1_A 62 EPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS 141 (339)
T ss_dssp CCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred EECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence 2 4677777777766644433321 1122221 001 46688999999999999999999999887522
Q ss_pred ccc----ccEEEEE-------ecCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCc-eecccccCCCeE
Q psy18018 497 KHQ----SAVTCLQ-------FNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQP-LLCPHLQFNSRF 564 (635)
Q Consensus 497 ~~~----~~v~~~~-------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~ 564 (635)
... ....|.. -.+..++.+..+..+.+.+ ++|+ ............ ....+ ..+-.++.|+.+
T Consensus 142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~----~~~~~~~~~~~~s~Dg~~ 215 (339)
T 2be1_A 142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN----VLDVPLALQNTFSKDGMC 215 (339)
T ss_dssp BCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECC----TTTHHHHTTCSSCSSSCC
T ss_pred CcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccc----ccccccccccccccCCcE
Confidence 110 0111111 1245677777777777766 4443 222211000000 00000 011123446777
Q ss_pred EEEecCCCeEEEEeCCCCceEE
Q psy18018 565 VITSSDDGTVKLWDVKTGEFIR 586 (635)
Q Consensus 565 l~~~~~d~~v~iwd~~~~~~~~ 586 (635)
++ ++.||.|.-+|..+|+.+.
T Consensus 216 ~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 216 IA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EE-EETTTEEEEECSTTCCEEE
T ss_pred EE-ECCCCEEEEEECCCCcEEE
Confidence 44 7889999999999998876
No 278
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.67 E-value=0.03 Score=51.34 Aligned_cols=221 Identities=11% Similarity=0.186 Sum_probs=124.0
Q ss_pred cEEEEecC--CCeEEEEEccCCceEE--eeeCCCcceeEEEEeCCEEEEEeCC----CcEEEEEccCCcceeEE------
Q psy18018 354 VHVVSGSL--DTSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD----STVKVWDIVSGTKKLMF------ 419 (635)
Q Consensus 354 ~~l~~~~~--dg~i~v~~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~------ 419 (635)
..++.|+. ...+..||..+.+-.. .+.............+.+++.|+.+ ..+..||..+.+.....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 34555554 3568889988765332 1222222333344456666777654 56788888776433221
Q ss_pred ---EEEeeCCcEEEEEeCC------CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeC---------CCcEE
Q psy18018 420 ---RICLFDGVHVVSGSLD------TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA---------DSTVK 479 (635)
Q Consensus 420 ---~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~---------dg~i~ 479 (635)
.....+++.++.|+.+ ..+.+||..+.+-... +........++..++.+++.|+. -..+.
T Consensus 93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEE
Confidence 1234477777777765 4688899887654322 22112222344456777777763 34588
Q ss_pred EEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCcee
Q psy18018 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554 (635)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 554 (635)
+||+.+.+-.. +.........-.++..++++++.|+.+ ..+.+||..+.+....-... . + .....
T Consensus 173 ~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~-~------r~~~~ 242 (306)
T 3ii7_A 173 VYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP--W-K------GVTVK 242 (306)
T ss_dssp EEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS--C-C------BSCCE
T ss_pred EeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC--C-C------cccee
Confidence 99998765332 222111222334455578888887754 35889999887644321110 0 0 00111
Q ss_pred cccccCCCeEEEEecCC-----CeEEEEeCCCCceEE
Q psy18018 555 CPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFIR 586 (635)
Q Consensus 555 ~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~~ 586 (635)
++ .-++++++.|+.+ ..+.+||+.+.+...
T Consensus 243 ~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 243 CA--AVGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp EE--EETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred EE--EECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 11 1278888888854 568999998876543
No 279
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.66 E-value=0.0052 Score=57.00 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=79.1
Q ss_pred cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCC-C-cccccEEEEEec---CCEEEEEeC-------------
Q psy18018 458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGR-N-KHQSAVTCLQFN---SRFVITSSD------------- 517 (635)
Q Consensus 458 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~---~~~l~~~~~------------- 517 (635)
...++.++ ...|+.+...+.+..+|..+++. ..+... . ........++++ |++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 45677776 35666666666688888775532 222210 0 011234556663 444444322
Q ss_pred ----CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-cCCCeEEEEeCCCCc--eEEeeee
Q psy18018 518 ----DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGE--FIRNLVS 590 (635)
Q Consensus 518 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~--~~~~~~~ 590 (635)
++.|..||..+++...... .......++++||+++|..+ ..++.|.+|++.... ....+..
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~ 227 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK 227 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe
Confidence 3567778876665322111 11234568999999866555 566899999987531 1222211
Q ss_pred ccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018 591 LDSGGSGGVVWRIRASETKLVCAVGSR 617 (635)
Q Consensus 591 ~~~~~~~~~i~~l~~s~d~~~l~~~~~ 617 (635)
..+ ...+++.++|.+.++...
T Consensus 228 -----~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 228 -----IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -----CSS-EEEEEECTTSCEEEEEEE
T ss_pred -----CCC-CCCeEECCCCCEEEEecC
Confidence 112 677899999986665543
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.64 E-value=0.016 Score=50.73 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=105.5
Q ss_pred EEeCCCcEEEEeCCCCceeeeecc-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce---eEEecC---CCccccc
Q psy18018 431 SGSLDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC---LQTLSG---RNKHQSA 501 (635)
Q Consensus 431 ~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~---~~~~~~~ 501 (635)
+...++.|...|.. ++....+.- -....-++++. +.++++.-.++.+.++++..... +..... ....+..
T Consensus 44 V~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g 122 (255)
T 3qqz_A 44 TINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG 122 (255)
T ss_dssp EEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSC
T ss_pred EECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCC
Confidence 34556666677766 666665532 12345566663 33445544667888888765432 222221 1123455
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECCC---CceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecCCCeEE
Q psy18018 502 VTCLQFN--SRFVITSSDDGTVKLWDVKT---GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSDDGTVK 575 (635)
Q Consensus 502 v~~~~~~--~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~v~ 575 (635)
...++++ ++.|+++.+.....+|.+.. ............... .+...+.++++.|. +++++....+..+.
T Consensus 123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~----~~~~d~S~l~~dp~tg~lliLS~~s~~L~ 198 (255)
T 3qqz_A 123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ----FTLDDVSGAEFNQQKNTLLVLSHESRALQ 198 (255)
T ss_dssp CEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT----CCSSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc----cccCCceeEEEcCCCCeEEEEECCCCeEE
Confidence 6888885 55666666655556665541 111111100000000 01235678888884 66777788889999
Q ss_pred EEeCCCCceEEeeeeccCCCC-----CceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 576 LWDVKTGEFIRNLVSLDSGGS-----GGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~-----~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
++|.+ |+.+..+. +....+ -..--.|+|.++|++.++ ++-.. +|.|...+
T Consensus 199 ~~d~~-g~~~~~~~-L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~----~y~f~~~~ 253 (255)
T 3qqz_A 199 EVTLV-GEVIGEMS-LTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR----FYRFTPQS 253 (255)
T ss_dssp EECTT-CCEEEEEE-CSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE----EEEEEC--
T ss_pred EEcCC-CCEEEEEE-cCCccCCcccccCCCCeeEECCCCCEEEE-cCCce----EEEEEecC
Confidence 99966 66555543 322111 135679999999986555 55554 88886543
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.053 Score=52.38 Aligned_cols=250 Identities=8% Similarity=0.035 Sum_probs=122.0
Q ss_pred CCCceEEEEe-cCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEEEEeCC-CcEEEEEccCCccee
Q psy18018 342 HVPDLFGFQF-DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNAD-STVKVWDIVSGTKKL 417 (635)
Q Consensus 342 ~~~~~~~~s~-~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~~~~~~~ 417 (635)
..+..++++| ++..|+++...+.|+.+|+..+.... +.........++++ ++.|+.+... +.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~------------ 203 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNND------------ 203 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTT------------
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcc------------
Confidence 4556778997 45566666655889999987655433 33334456677775 3434433321 100
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEeCCCCcee--eeec--cCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy18018 418 MFRICLFDGVHVVSGSLDTSIRVWEAESGNLR--HTLM--GHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQCLQTL 492 (635)
Q Consensus 418 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~--~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 492 (635)
...+..++.. +... ..+. .|...+ ++.. ++.++++-..++.|..++...+......
T Consensus 204 -----------------~~~v~~~~~~-g~~~~~~~l~~~~~p~gi-avdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 204 -----------------RPNNYILTRE-SGFKVITELTKGQNCNGA-ETHPINGELYFNSWNAGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp -----------------SEEEEEEEGG-GTSCSEEEEEECSSCCCE-EECTTTCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----------------cceEEEEeCC-CceeeeeeeccCCCceEE-EEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 0011111111 1110 1111 122111 2333 3456666667788999998866542222
Q ss_pred cCCCcccccEEEEEe--cCCE-EEEEeCCCcEEEEECCC--Cce--eeeeccce-ecCceeE----EeccCceecccc--
Q psy18018 493 SGRNKHQSAVTCLQF--NSRF-VITSSDDGTVKLWDVKT--GEF--STPLMSSF-ILNPFYF----LIYSQPLLCPHL-- 558 (635)
Q Consensus 493 ~~~~~~~~~v~~~~~--~~~~-l~~~~~d~~i~vwd~~~--~~~--~~~~~~~~-~~~~~~~----~~~~~~v~~~~~-- 558 (635)
... .......+++ ++++ +++-...+.|..++... ++. ...+.... ....... ..+..+--.++.
T Consensus 265 ~~~--~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~ 342 (430)
T 3tc9_A 265 TIQ--DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN 342 (430)
T ss_dssp ECS--SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred EcC--CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence 211 1123456777 5774 44555678899987653 221 11111100 0000000 001111113333
Q ss_pred ------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeecc---CCC----------CCceEEEEEeCCC-CeEEEEccCC
Q psy18018 559 ------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLD---SGG----------SGGVVWRIRASET-KLVCAVGSRN 618 (635)
Q Consensus 559 ------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~----------~~~~i~~l~~s~d-~~~l~~~~~d 618 (635)
.+++.+.++=...+.|+.++ .+|+..... ... ..+ .-.....++++|+ |.++++-..+
T Consensus 343 ~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 420 (430)
T 3tc9_A 343 PAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN 420 (430)
T ss_dssp GGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence 24466666666678899998 456543332 110 001 0124789999994 6666655555
Q ss_pred CeeEeEEEEEeee
Q psy18018 619 GTEETKLLVLDFD 631 (635)
Q Consensus 619 g~~~~~l~~~d~~ 631 (635)
.. |..+++|
T Consensus 421 ~r----Ir~i~~e 429 (430)
T 3tc9_A 421 RR----IRKIGYE 429 (430)
T ss_dssp TE----EEEEEEC
T ss_pred Ce----EEEEccC
Confidence 54 6667665
No 282
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.58 E-value=0.0062 Score=56.03 Aligned_cols=181 Identities=9% Similarity=0.078 Sum_probs=97.7
Q ss_pred CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018 436 TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD-----STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN 508 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 508 (635)
..+.+||..+.+-.. .+........+...++.+++.|+.+ ..+.+||+.+.+-...-..+. ....-.++..+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~ 168 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVLN 168 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEET
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEEEC
Confidence 356777776654322 1111122233444567777777643 358899988765332211111 22233444557
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEEe
Q psy18018 509 SRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLWD 578 (635)
Q Consensus 509 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd 578 (635)
+++++.|+.+ ..+.+||..+.+........ .+ ..-.++ ..-++++++.|+.+ ..+.+||
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~-------r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd 237 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN---TI-------RSGAGV-CVLHNCIYAAGGYDGQDQLNSVERYD 237 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS---SC-------CBSCEE-EEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC---Cc-------cccceE-EEECCEEEEEeCCCCCCccceEEEEe
Confidence 8888888765 45889998877644321110 00 000011 12278888888765 5699999
Q ss_pred CCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe-eEeEEEEEeeecC
Q psy18018 579 VKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-EETKLLVLDFDVD 633 (635)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~-~~~~l~~~d~~~~ 633 (635)
+.+.+....- ..+. +. .....+. -++++++.|+.++. ..-.++.||++.+
T Consensus 238 ~~~~~W~~~~-~~p~-~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 238 VETETWTFVA-PMKH-RR-SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTTTEEEECC-CCSS-CC-BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCcEEECC-CCCC-Cc-cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 9988764332 2111 11 1112222 26788888886653 2346888888754
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.56 E-value=0.092 Score=53.29 Aligned_cols=183 Identities=7% Similarity=0.030 Sum_probs=97.3
Q ss_pred ceEEEEecCcEEE-EecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcceeEE-
Q psy18018 345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKLMF- 419 (635)
Q Consensus 345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~- 419 (635)
..+++.+.+..|+ +-...+.|+.++.........+...-....+++++ +. +.++-...+.|.+.++.........
T Consensus 352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~ 431 (619)
T 3s94_A 352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS 431 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEE
Confidence 3456776444444 44457889888887544433343333466788886 44 5555556778888888765332221
Q ss_pred --------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEECCCC
Q psy18018 420 --------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWDIVSG 486 (635)
Q Consensus 420 --------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~ 486 (635)
.++.|....|..+.. ...|...++............-...++++++ .+.|..+ ...+.|..+++...
T Consensus 432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 124444344444433 2456666654322222222233456677765 4455544 44577888888644
Q ss_pred ceeEEecCCCcccccEEEEEecCCEEEEEe-CCCcEEEEECCCCc
Q psy18018 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSS-DDGTVKLWDVKTGE 530 (635)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~ 530 (635)
.....+.....|.. .++..+.+|+... ..+.|...|..++.
T Consensus 512 ~~~~~~~~~l~~P~---glav~~~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 512 GRRVLVEDKIPHIF---GFTLLGDYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CCEEEEECCCCSSC---CEEEETTEEEEECTTSSCEEEEESSSCC
T ss_pred ceEEEeccCCCCcE---EEEEECCEEEEeecCCCeEEEEEcCCCc
Confidence 32222222112332 3445444554443 45667777777763
No 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.53 E-value=0.13 Score=54.21 Aligned_cols=216 Identities=10% Similarity=0.057 Sum_probs=110.5
Q ss_pred cceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeE--------------EEEEeeCCcEEEEEeCCCcEEEEeCCCC--
Q psy18018 384 SLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLM--------------FRICLFDGVHVVSGSLDTSIRVWEAESG-- 446 (635)
Q Consensus 384 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~l~~~~~d~~i~~~d~~~~-- 446 (635)
..|.++..+ ...|..|+ ++-+..++..+++.... ..++......|..|+..+-+..+|..+.
T Consensus 373 ~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~ 451 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQ 451 (758)
T ss_dssp SCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHH
T ss_pred CceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccc
Confidence 357777776 44566666 45788888776543221 1122223345666776666788875421
Q ss_pred ---cee---eeec---c-CCccEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec-CCEEE
Q psy18018 447 ---NLR---HTLM---G-HQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVI 513 (635)
Q Consensus 447 ---~~~---~~~~---~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~ 513 (635)
... ..+. + ....|.++..+ +++.+.++..+-+..+|..+++..............+.++..| ...|.
T Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE
T ss_pred cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE
Confidence 111 1111 1 12357777775 4444433444558889988765443221111123457777774 33444
Q ss_pred EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC
Q psy18018 514 TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS 593 (635)
Q Consensus 514 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 593 (635)
.|+..| +..++..+++... +... . + ....|.++... +|++.+ ++.+| +..+|.++.+.. .+. .
T Consensus 532 igt~~G-l~~~~~~~~~~~~-~~~~----g---l-~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~-~~~-~-- 594 (758)
T 3ott_A 532 VGFHGG-VMRINPKDESQQS-ISFG----S---F-SNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDAR-QQN-M-- 594 (758)
T ss_dssp EEETTE-EEEECC--CCCCB-CCCC----C-------CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEE-EC-----
T ss_pred EEecCc-eEEEecCCCceEE-eccc----C---C-CccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeE-Eec-C--
Confidence 555555 8888877654322 1100 0 0 12346666653 666555 44556 778898876643 221 1
Q ss_pred CCCCceEEEEEe-CCCCeEEEEccCCCe
Q psy18018 594 GGSGGVVWRIRA-SETKLVCAVGSRNGT 620 (635)
Q Consensus 594 ~~~~~~i~~l~~-s~d~~~l~~~~~dg~ 620 (635)
....+....+ .++|++ ..|+.+|.
T Consensus 595 --~~~~~~~~~~~~~~G~l-~fG~~~Gl 619 (758)
T 3ott_A 595 --TNKRFTSLLFDPKEDCV-YLGGADGF 619 (758)
T ss_dssp --CCCCCSEEEEETTTTEE-EEECBSEE
T ss_pred --CCCceeeeEEECCCCcE-EEecCCce
Confidence 1112223333 456654 55777783
No 285
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.51 E-value=0.047 Score=48.81 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=122.7
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV 427 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 427 (635)
.+|..+.+|.-. ...+++||+++.+.++.+.-. ..|....|- .+.|+..+. ..|.-|++....
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s------------- 137 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGES------------- 137 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEES-SEEEEEESSTTC-------------
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEcC-CcEEEEcccCCC-------------
Confidence 567777666654 678999999998888877664 355566663 555554443 356666665311
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEe-------CCCcEEEEECCCCceeEEecCCCcc
Q psy18018 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-------ADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
.-++++|.... + ....|.....+ .++++..+ -.|.+.+|..+. +..+.+.+ |
T Consensus 138 --------~P~kvFdR~~~-----L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieG---h 198 (365)
T 2xzh_A 138 --------QPVKMFDRHSS-----L--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEG---H 198 (365)
T ss_dssp --------CCEEEEECCGG-----G--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECC---S
T ss_pred --------CCceeeecchh-----c--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeee---e
Confidence 11222222110 0 01122222222 22222211 136789999874 34555665 5
Q ss_pred cccEEEEEecCC-----EEEEEeC---CCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 499 QSAVTCLQFNSR-----FVITSSD---DGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 499 ~~~v~~~~~~~~-----~l~~~~~---d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
...-..+..+|+ +++.+.. .+.+++-++... .-...+......-......-.+--.++..|+.-..+..-+
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT 278 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 278 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe
Confidence 444444444322 3333332 257889888543 1111111100000000001123345677787778888888
Q ss_pred CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
.-|.+.+||++++.++..-+ -..++|..-+...+..=++.....|.
T Consensus 279 K~G~ihlyDleTgt~i~~nr-----IS~d~iF~ta~~~~~~Gi~~Vnr~Gq 324 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ 324 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEEGGGTEEEEEETTCE
T ss_pred CCcEEEEEEcccCcEEEEec-----cCCCceEEecccCCCCcEEEEcCCCE
Confidence 99999999999999987763 34555665555444333333446665
No 286
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.49 E-value=0.074 Score=50.52 Aligned_cols=218 Identities=7% Similarity=0.003 Sum_probs=122.0
Q ss_pred EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCE-EEEEeCCCcEEEEEccCCcceeEE---------EEE
Q psy18018 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNI-LVSGNADSTVKVWDIVSGTKKLMF---------RIC 422 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~~~~---------~~~ 422 (635)
+|+.+. ...|+.+++.......... ......+++|+ .+. +++-...+.|..+++......... ..+
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 344333 3568888887655444443 33457888887 344 445456778888888766432221 123
Q ss_pred eeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEE-EEEeCC-CcEEEEECCCCceeEEecCCCc
Q psy18018 423 LFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNIL-VSGNAD-STVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 423 ~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~d-g~i~iwd~~~~~~~~~~~~~~~ 497 (635)
.+.+..| ++-...+.|.+.++........+...-....+++++ +..| ++-... +.|..+++...........
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~--- 243 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT--- 243 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---
Confidence 4334444 444456678888876443333333333455667665 3444 443344 6788888764333222222
Q ss_pred ccccEEEEEec--CCE-EEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018 498 HQSAVTCLQFN--SRF-VITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574 (635)
Q Consensus 498 ~~~~v~~~~~~--~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v 574 (635)
.......++++ +.. +++-+..+.|..+++........+.. .......+++ ..+.++++-...+.|
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-----------~~~~P~giav-~~~~ly~td~~~~~V 311 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-----------GLPHPFAITV-FEDSLYWTDWHTKSI 311 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS-----------SCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC-----------CCCCceEEEE-ECCEEEEeeCCCCeE
Confidence 22335667773 444 44545667899999764332211111 0123345666 356677777778899
Q ss_pred EEEeCCCCceEEeee
Q psy18018 575 KLWDVKTGEFIRNLV 589 (635)
Q Consensus 575 ~iwd~~~~~~~~~~~ 589 (635)
..+|..+|+.+..+.
T Consensus 312 ~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 312 NSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEETTTCCSCEEEE
T ss_pred EEEECCCCcceEEEc
Confidence 999977777665553
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.43 E-value=0.095 Score=50.57 Aligned_cols=160 Identities=9% Similarity=0.025 Sum_probs=85.6
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEEECC--CCcee--eeecc
Q psy18018 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLWDVK--TGEFS--TPLMS 537 (635)
Q Consensus 465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vwd~~--~~~~~--~~~~~ 537 (635)
++.++++-..++.|+.+|..++.....+.... ....-..+++ ++++| ++-...+.|+.++.. ++... ..+..
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp TCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred CCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 34555565567889999988776523322111 1111234666 57744 444556889998865 33221 11111
Q ss_pred ceecCce-eEE---eccCceecccc---------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccC-----------
Q psy18018 538 SFILNPF-YFL---IYSQPLLCPHL---------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDS----------- 593 (635)
Q Consensus 538 ~~~~~~~-~~~---~~~~~v~~~~~---------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------- 593 (635)
....... ... ..-.....+++ .+++.+.++-..++.|+.++. +|+.. .+.....
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~ 395 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGEL 395 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEET
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCcc
Confidence 0000000 000 00112456788 677888877777889999984 56543 3321100
Q ss_pred --CCCCceEEEEEeC-CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 594 --GGSGGVVWRIRAS-ETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 594 --~~~~~~i~~l~~s-~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
...-.....|+++ ++|.++++-..+.. |..+++|
T Consensus 396 ~~~~~~~~P~giavd~~~g~lyVaD~~n~r----Ir~i~~e 432 (433)
T 4hw6_A 396 RSQALFNHPTSIAYDMKRKCFYIGDCDNHR----VRKIAPE 432 (433)
T ss_dssp TTTCBCSSEEEEEEETTTTEEEEEEGGGTE----EEEEEEC
T ss_pred ccccEeCCCcEEEEECCCCEEEEEeCCCCE----EEEEecC
Confidence 0011247899999 67777766666665 6666665
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.42 E-value=0.011 Score=62.13 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=98.7
Q ss_pred ceEEEE-ecCcEEEEecC-C----CeEEEEEccCC-ceEE-eeeCCCcceeEEEEe--CCEEEEEeCC-----CcEEEEE
Q psy18018 345 DLFGFQ-FDGVHVVSGSL-D----TSIRVWEAESG-NLRH-TLMGHQSLTSGMELR--NNILVSGNAD-----STVKVWD 409 (635)
Q Consensus 345 ~~~~~s-~~~~~l~~~~~-d----g~i~v~~~~~~-~~~~-~~~~~~~~v~~l~~~--~~~l~s~~~d-----g~i~iwd 409 (635)
...++| |||++|+.+.. + ..|+++|+.++ +.+. .+. .....++|+ ++.|+....+ ..|..++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 346799 99998875433 2 35999999988 6321 111 113456675 4455555544 2577777
Q ss_pred ccCCcce--e----------EEEEEeeCCcEEEEEeC---CCcEEEEeCCCCc-ee--eee-ccCCccEEEEE-ecCCEE
Q psy18018 410 IVSGTKK--L----------MFRICLFDGVHVVSGSL---DTSIRVWEAESGN-LR--HTL-MGHQSLTSGME-LRNNIL 469 (635)
Q Consensus 410 ~~~~~~~--~----------~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~-~~--~~~-~~~~~~v~~~~-~~~~~l 469 (635)
+.++... . ....+++||++|+.... ...|.++|+.++. .. ..+ ........... ..++.|
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 7665321 1 12247899999887663 3468889988752 12 333 33344555555 346654
Q ss_pred E-EEeCC----CcEEEEECCCCceeEE-ecCCCcccccEEEEEecCC-EEEEEeCCCc--EEEEEC
Q psy18018 470 V-SGNAD----STVKVWDIVSGQCLQT-LSGRNKHQSAVTCLQFNSR-FVITSSDDGT--VKLWDV 526 (635)
Q Consensus 470 ~-s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~--i~vwd~ 526 (635)
+ ....+ ..|..+++.++..... +... .....+..+.+.++ ++++...++. |.++++
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 4 44333 2566777764322222 2211 12224566777544 5566666775 455564
No 289
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.42 E-value=0.028 Score=51.57 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=122.8
Q ss_pred ecCcEEEEecCC----CeEEEEEccCCceEEe--eeCCCcceeEEEEeCCEEEEEeC----C-----CcEEEEEccCCcc
Q psy18018 351 FDGVHVVSGSLD----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA----D-----STVKVWDIVSGTK 415 (635)
Q Consensus 351 ~~~~~l~~~~~d----g~i~v~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~~~----d-----g~i~iwd~~~~~~ 415 (635)
.++..++.|+.+ ..+.+||..+.+-... +......-......+.+++.|+. + ..+.+||+.+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 356666776632 4688899876653322 11111122233334556666654 2 4678888776542
Q ss_pred eeE---------EEEEeeCCcEEEEEeCC-----CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeCC----
Q psy18018 416 KLM---------FRICLFDGVHVVSGSLD-----TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNAD---- 475 (635)
Q Consensus 416 ~~~---------~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d---- 475 (635)
... ......+++.++.|+.+ ..+..||..+.+-... +......-.+...++.+++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp EECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred eECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCc
Confidence 221 11233467777776643 4588889887643322 222222223444567777777754
Q ss_pred -CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEec
Q psy18018 476 -STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIY 549 (635)
Q Consensus 476 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 549 (635)
..+.+||+.+.+-.. +...........++..++++++.|+.+ ..+.+||+.+.+........ .
T Consensus 183 ~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~------- 251 (308)
T 1zgk_A 183 LNSAECYYPERNEWRM-ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK---H------- 251 (308)
T ss_dssp CCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS---S-------
T ss_pred CceEEEEeCCCCeEee-CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC---C-------
Confidence 458899988765332 221111222334455588888888765 56899999887644322110 0
Q ss_pred cCceecccccCCCeEEEEecCC-----CeEEEEeCCCCceEE
Q psy18018 550 SQPLLCPHLQFNSRFVITSSDD-----GTVKLWDVKTGEFIR 586 (635)
Q Consensus 550 ~~~v~~~~~s~~~~~l~~~~~d-----~~v~iwd~~~~~~~~ 586 (635)
. .....+..-++++++.|+.+ ..+.+||+.+.+...
T Consensus 252 ~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 252 R-RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp C-CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred C-ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 0 00011112277888888754 468899998876543
No 290
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.42 E-value=0.017 Score=53.29 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=93.1
Q ss_pred EEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeCC-------CcEEEEECCCCceeEEecCCCcccccEEEEEec
Q psy18018 438 IRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNAD-------STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN 508 (635)
Q Consensus 438 i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 508 (635)
+..||..+.+-.. .+........+...++.+++.|+.+ ..+.+||+.+.+-...-..+. ....-.++..+
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~ 158 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVYGHNVISHN 158 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEESCEEEEET
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-cccccEEEEEC
Confidence 5566665543322 1111112223344567777777754 347888988765333211111 12223344467
Q ss_pred CCEEEEEeC------CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC-----CeEEEE
Q psy18018 509 SRFVITSSD------DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD-----GTVKLW 577 (635)
Q Consensus 509 ~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw 577 (635)
+++++.|+. -..+.+||..+.+........ .+ ...| ++ ..-++++++.|+.+ ..+.+|
T Consensus 159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~--r~~~-----~~-~~~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK---TP--RSMF-----GV-AIHKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS---SC--CBSC-----EE-EEETTEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC---CC--cccc-----eE-EEECCEEEEEcCcCCCCccceEEEE
Confidence 888888764 245899999887644321110 00 0001 11 12267888887653 357899
Q ss_pred eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe----------eEeEEEEEeeecC
Q psy18018 578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT----------EETKLLVLDFDVD 633 (635)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~----------~~~~l~~~d~~~~ 633 (635)
|+.+.+....- ..+. +. ... +++ .-++++++.|+.++. ..-.+|.||++.+
T Consensus 228 d~~~~~W~~~~-~~p~-~r-~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 228 DLKTNKWEVMT-EFPQ-ER-SSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp ETTTCCEEECC-CCSS-CC-BSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred ECCCCeEEECC-CCCC-cc-cce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 99887754322 1111 11 111 222 235788888886541 2345889988754
No 291
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.39 E-value=0.19 Score=52.88 Aligned_cols=425 Identities=10% Similarity=0.048 Sum_probs=213.7
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEECCCCcEEEEEeeCCCcEEEEeCCCCeEEEEeeCCCcceEEEEecCCEEEEEeCCC
Q psy18018 84 ITCLQFS-GSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDY 162 (635)
Q Consensus 84 i~~~~~s-~~~l~s~~~d~~v~vWd~~~~~~ll~~~~~dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~l~s~~~dg 162 (635)
|.++... ...|-.|+.+| +..+|..+++. ..........|.++..+...|..++.+
T Consensus 65 i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f---------------------~~~~~~~~~~i~~i~~~~g~lWigt~~- 121 (758)
T 3ott_A 65 IYCGVIIDNTYLYMGTDNG-ILVYNYRADRY---------------------EQPETDFPTDVRTMALQGDTLWLGALN- 121 (758)
T ss_dssp EEEEEEETTTEEEEEETTE-EEEEETTTTEE---------------------CCCSCCCCSCEEEEEEETTEEEEEETT-
T ss_pred EEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE---------------------ECcccCCCceEEEEEecCCcEEEEcCC-
Confidence 3777666 55566666554 66777664421 110011123466665545567777766
Q ss_pred eEEEEeCCCccceeecc----ccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCC----CCCeEEEEee-
Q psy18018 163 MVKIWNPDTEECLHAEL----QETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTL-IGH----TGGVWSSQMA- 232 (635)
Q Consensus 163 ~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h----~~~v~~~~~~- 232 (635)
-+..+|..+++...... .....+.......++.|.+++.+ -+..++..+++..... ... ...|.++..+
T Consensus 122 Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 200 (758)
T 3ott_A 122 GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT 200 (758)
T ss_dssp EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence 57788887655322100 11122333333445667777765 4778887766543211 111 2247888775
Q ss_pred -CCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhccc
Q psy18018 233 -GNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQT 311 (635)
Q Consensus 233 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (635)
++.|..|.. +-+..++..+....... ..
T Consensus 201 ~~~~lWigt~-~Gl~~~~~~~~~~~~~~--------------~l------------------------------------ 229 (758)
T 3ott_A 201 TRQCVWIGTE-GYLFQYFPSTGQIKQTE--------------AF------------------------------------ 229 (758)
T ss_dssp TTTEEEEEEE-EEEEEEETTTTEEEEEE--------------EE------------------------------------
T ss_pred CCCEEEEEEC-CCCeEEcCCCCeEEecc--------------CC------------------------------------
Confidence 455566664 45666775443211000 00
Q ss_pred ccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEecCCCeEEEEEccCCceEEeee-------CCCc
Q psy18018 312 CRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM-------GHQS 384 (635)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~-------~~~~ 384 (635)
.......+....+|. |..|+.+ -+.+++..+++...... -...
T Consensus 230 ----------------------------~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 230 ----------------------------HNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp ----------------------------EEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCS
T ss_pred ----------------------------CCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcC
Confidence 000011111222343 4555544 47788876654332211 1123
Q ss_pred ceeEEEEe-CCEEEEEeCCCcEEEEEccCC-------------cceeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc--e
Q psy18018 385 LTSGMELR-NNILVSGNADSTVKVWDIVSG-------------TKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGN--L 448 (635)
Q Consensus 385 ~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~ 448 (635)
.|.++..+ ...|..|+..| +.++..... .......++......|..|+.+| +..++..+++ .
T Consensus 280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 280 IIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHD 357 (758)
T ss_dssp CEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCC
T ss_pred eEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccce
Confidence 57788776 44566666666 544332110 00112222222333455566554 6666655432 1
Q ss_pred eeeecc-------CCccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeEEec-CCC--cccccEEEEEec-CCEEEEEe
Q psy18018 449 RHTLMG-------HQSLTSGMELRN-NILVSGNADSTVKVWDIVSGQCLQTLS-GRN--KHQSAVTCLQFN-SRFVITSS 516 (635)
Q Consensus 449 ~~~~~~-------~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~--~~~~~v~~~~~~-~~~l~~~~ 516 (635)
...+.. ....|.++..+. ..|..|+. +-+..||..+++...-.. ... .....|.++..+ ...|..|+
T Consensus 358 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT 436 (758)
T 3ott_A 358 AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST 436 (758)
T ss_dssp CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE
T ss_pred eEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE
Confidence 111210 123577887753 34555654 569999988765433211 110 023457888875 45677777
Q ss_pred CCCcEEEEECCCC-----ceee---eeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018 517 DDGTVKLWDVKTG-----EFST---PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 517 ~d~~i~vwd~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 588 (635)
..+-|.++|.++. .... .+... .. .....|.++...++|++.+.++..+-+..+|..+++... +
T Consensus 437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~---~~----l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-~ 508 (758)
T 3ott_A 437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVH---NG----LSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-L 508 (758)
T ss_dssp SSSCEEEEEHHHHHHCCSSEEECSEEECGG---GT----CSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-E
T ss_pred CCCceEEEccccccccCCcceecccccccc---cc----cccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-e
Confidence 6666888885431 1110 00000 00 012357888888889877643334458889988776443 3
Q ss_pred eeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 589 VSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
.. ........+.++....+|.+-+.. .+| |+.+|++
T Consensus 509 ~~-~~~~~~~~~~~i~~d~~g~lWigt-~~G-----l~~~~~~ 544 (758)
T 3ott_A 509 FA-DELTGEKSPNYLLCDEDGLLWVGF-HGG-----VMRINPK 544 (758)
T ss_dssp CT-TTSCGGGCEEEEEECTTSCEEEEE-TTE-----EEEECC-
T ss_pred cC-CCcCCCcccceEEECCCCCEEEEe-cCc-----eEEEecC
Confidence 11 111123568888888888866543 456 6666654
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.02 Score=55.49 Aligned_cols=161 Identities=14% Similarity=0.215 Sum_probs=92.1
Q ss_pred EEEEEecC---C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe---------cCCEEEEEeCCC------
Q psy18018 459 TSGMELRN---N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF---------NSRFVITSSDDG------ 519 (635)
Q Consensus 459 v~~~~~~~---~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~l~~~~~d~------ 519 (635)
...|++++ + ++++-...+.|++.|+.++..................+++ ++++|+.+...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 44566664 2 4455444577999999877665544432222335777887 477666665543
Q ss_pred -cEEEEECCC-CceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCC-------CCce-----
Q psy18018 520 -TVKLWDVKT-GEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVK-------TGEF----- 584 (635)
Q Consensus 520 -~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~-------~~~~----- 584 (635)
.+.+++... +........ ..+ ... .....++++| ++.++++-..++.|..+|+. +++.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~----~~v--~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDI----QLI--AAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCE----EEE--EEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred ceEEEEecCCCCceeecccc----eee--ccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 256666443 222100000 000 012 2445788899 45666666788899999998 5553
Q ss_pred ------EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 585 ------IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 585 ------~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
+..+... +.......|+|+|+|++|.++..... +|+.+|++.
T Consensus 294 ~~~~g~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~~h---~I~kid~dg 341 (496)
T 3kya_A 294 KNNPNTFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVINNH---YFMRSDYDE 341 (496)
T ss_dssp GGCTTTEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTT---EEEEEEEET
T ss_pred cccccccceeEec---CCCCCceEEEEcCCCCEEEEEeCCCC---EEEEEecCC
Confidence 2232211 22345679999999996666654443 477766654
No 293
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.017 Score=52.97 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=97.9
Q ss_pred EEEecCcEEEEecCCCeEEEEEccCC--ceEEeeeCCCcceeEEEEeCCEEEEE--eCCCcEEEEEccCCcceeEEEE--
Q psy18018 348 GFQFDGVHVVSGSLDTSIRVWEAESG--NLRHTLMGHQSLTSGMELRNNILVSG--NADSTVKVWDIVSGTKKLMFRI-- 421 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~v~~~~~~--~~~~~~~~~~~~v~~l~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~-- 421 (635)
.-+.||...+.-..+|.+ +|..... ............ .+..++.+ +.||.+..++..++........
T Consensus 15 v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 15 AADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred EEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 345588877777777754 6887765 222222222211 22233333 5788888888776643322221
Q ss_pred ------Ee-------------eCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCc-c------EEEEE-------ecCCE
Q psy18018 422 ------CL-------------FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQS-L------TSGME-------LRNNI 468 (635)
Q Consensus 422 ------~~-------------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~------v~~~~-------~~~~~ 468 (635)
+. ..+..+++|+.++.+...|+.+|+.+.++..... . ..|.. ..++.
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11 1567889999999999999999999998864321 0 11111 12456
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecC----CCcccccEE---EEEecCCEEEEEeCCCcEEEEECCCCceee
Q psy18018 469 LVSGNADSTVKVWDIVSGQCLQTLSG----RNKHQSAVT---CLQFNSRFVITSSDDGTVKLWDVKTGEFST 533 (635)
Q Consensus 469 l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 533 (635)
++.+..+..+.+.+ ++++ +..+.. .......+. .+..|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777766 4443 222110 000000000 00113455 557889999999998888665
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.019 Score=55.55 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=87.4
Q ss_pred EEEEec---CCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeC-CC----cEEEEECCCC
Q psy18018 460 SGMELR---NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSD-DG----TVKLWDVKTG 529 (635)
Q Consensus 460 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~----~i~vwd~~~~ 529 (635)
..++++ +..|.++...+.|+.+|+..+....... .......+++ ++++|+.+.. ++ .+..++ ..+
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 345555 2455555555889999988765443333 3344667777 4775555553 22 233333 333
Q ss_pred ceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018 530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET 608 (635)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 608 (635)
..... ...........++++| ++.++++-..++.|..++..+++..... .. +.......++|+|+
T Consensus 215 ~~~~~----------~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-~~---~~~~~P~gia~~pd 280 (430)
T 3tc9_A 215 GFKVI----------TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-TI---QDSGWEFHIQFHPS 280 (430)
T ss_dssp TSCSE----------EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-EC---SSSSCCEEEEECTT
T ss_pred ceeee----------eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-Ec---CCCCcceeEEEcCC
Confidence 22210 0011123456788999 7777777777889999999876642222 11 12244678999999
Q ss_pred CeEEEEccCCCeeEeEEEEEeeec
Q psy18018 609 KLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 609 ~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
|++|.++..... +|+.+|.+.
T Consensus 281 G~~lyv~d~~~~---~I~~~~~d~ 301 (430)
T 3tc9_A 281 GNYAYIVVVNQH---YILRSDYDW 301 (430)
T ss_dssp SSEEEEEETTTT---EEEEEEEET
T ss_pred CCEEEEEECCCC---EEEEEeCCc
Confidence 996666554432 366666653
No 295
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.30 E-value=0.013 Score=61.43 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=100.3
Q ss_pred EEEe-eCCcEEEEEeC-C----CcEEEEeCCCC-ceee-eeccCCccEEEEEe--cCCEEEEEeCC-----CcEEEEECC
Q psy18018 420 RICL-FDGVHVVSGSL-D----TSIRVWEAESG-NLRH-TLMGHQSLTSGMEL--RNNILVSGNAD-----STVKVWDIV 484 (635)
Q Consensus 420 ~~~~-~~~~~l~~~~~-d----~~i~~~d~~~~-~~~~-~~~~~~~~v~~~~~--~~~~l~s~~~d-----g~i~iwd~~ 484 (635)
..++ |||++|+.+.. + ..|+++|+.++ +.+. .+.. ....+.| +++.|+....| ..|+.+++.
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 3568 88888776543 2 25999999988 6321 1111 1123444 56666655554 258888887
Q ss_pred CCce--eEEecCCCcccccEEEEEe--cCCEEEEEeC---CCcEEEEECCCCce-e--eeeccceecCceeEEeccCcee
Q psy18018 485 SGQC--LQTLSGRNKHQSAVTCLQF--NSRFVITSSD---DGTVKLWDVKTGEF-S--TPLMSSFILNPFYFLIYSQPLL 554 (635)
Q Consensus 485 ~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---d~~i~vwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~v~ 554 (635)
++.. ...+... .......+.+ |+++|+..+. ...|+++|+.++.. . ..+... ......
T Consensus 256 t~~~~~~lv~~~~--~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~----------~~~~~~ 323 (751)
T 2xe4_A 256 KLQSEDVCLYEEH--NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR----------EKGVRY 323 (751)
T ss_dssp SCGGGCEEEEECC--CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC----------CTTCCE
T ss_pred CCchhcEEEEecC--CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC----------CCCceE
Confidence 7642 1222211 1223344555 7888876653 34688889887521 1 112111 112222
Q ss_pred cccccCCCeEEEEecCC----CeEEEEeCCCCceEEe-eeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 555 CPHLQFNSRFVITSSDD----GTVKLWDVKTGEFIRN-LVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 555 ~~~~s~~~~~l~~~~~d----~~v~iwd~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
++.|+.++.+++....+ ..|..+|+.++..... +. .......+..+.+. .+.++++...+|. .+|+.+|
T Consensus 324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li---~~~~~~~l~~~~~~-~~~lv~~~~~~g~--~~l~~~d 397 (751)
T 2xe4_A 324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV---DHSEDVFMESIAVR-SNYLVVAGRRAGL--TRIWTMM 397 (751)
T ss_dssp EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE---CCCSSEEEEEEEEC-SSEEEEEEEETTE--EEEEEEE
T ss_pred EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE---CCCCCcEEEEEEEE-CCEEEEEEEeCCE--EEEEEEe
Confidence 23333344444544443 3677778765321112 21 11223356677776 3567777778887 6777777
Q ss_pred e
Q psy18018 630 F 630 (635)
Q Consensus 630 ~ 630 (635)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 5
No 296
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.26 E-value=0.029 Score=52.81 Aligned_cols=144 Identities=8% Similarity=0.004 Sum_probs=70.7
Q ss_pred CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeC------CCcEEEEEC--CCCceeeeeccceecCceeEE
Q psy18018 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSD------DGTVKLWDV--KTGEFSTPLMSSFILNPFYFL 547 (635)
Q Consensus 476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~ 547 (635)
..+.+||+.+.+-...-..+........++..++++++.|+. ...+.+||+ .+.+....... ..+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~---~~~---- 240 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV---SSP---- 240 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS---STT----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC---CCC----
Confidence 578999998765333222111112223444457777777764 245777877 44332221110 000
Q ss_pred eccCceecccccCCCeEEEEecCC----------------------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEe
Q psy18018 548 IYSQPLLCPHLQFNSRFVITSSDD----------------------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRA 605 (635)
Q Consensus 548 ~~~~~v~~~~~s~~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 605 (635)
.....+.+...++++++.|+.+ ..+.+||+.+.+.... ...+. +... -.+ .
T Consensus 241 --~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~-~r~~-~~~--~ 313 (357)
T 2uvk_A 241 --DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-GELSQ-GRAY-GVS--L 313 (357)
T ss_dssp --TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-EECSS-CCBS-SEE--E
T ss_pred --cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-CCCCC-Cccc-cee--E
Confidence 0011111233477888888732 2578999987765432 22211 1111 112 2
Q ss_pred CCCCeEEEEccCCCe--eEeEEEEEeeecC
Q psy18018 606 SETKLVCAVGSRNGT--EETKLLVLDFDVD 633 (635)
Q Consensus 606 s~d~~~l~~~~~dg~--~~~~l~~~d~~~~ 633 (635)
..++++++.|+.++. ..-.++.++++.+
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 347888888986653 2356888888765
No 297
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.26 E-value=0.14 Score=48.63 Aligned_cols=93 Identities=4% Similarity=-0.153 Sum_probs=49.8
Q ss_pred CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECCCCeEEEEEeCCCCCeEEEEee---CCE
Q psy18018 160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMA---GNI 235 (635)
Q Consensus 160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~ 235 (635)
....|+..++.....................+.++.|+.. ...+.|..+++..+.....+.........++++ +.+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 4467888888765543332222223333333345555544 456788889987665444333222334455554 334
Q ss_pred EEEeeCceeEEEecccc
Q psy18018 236 IISGSTDRTLKGWSNAE 252 (635)
Q Consensus 236 l~s~~~dg~i~~w~~~~ 252 (635)
.++-...+.|.+.+++.
T Consensus 174 Y~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDG 190 (386)
T ss_dssp EEEETTTTEEEECBTTS
T ss_pred EEEcCCCCeEEEEeCCC
Confidence 45555566777776553
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.23 E-value=0.23 Score=50.52 Aligned_cols=148 Identities=12% Similarity=0.058 Sum_probs=79.6
Q ss_pred cEEEEEec--CC-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEec---CCEEEEEeCCC--cEEEEECCCC
Q psy18018 458 LTSGMELR--NN-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---SRFVITSSDDG--TVKLWDVKTG 529 (635)
Q Consensus 458 ~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~--~i~vwd~~~~ 529 (635)
...+++++ ++ +.++-+..+.|.+.++. ++....+... .......++++ |.++++-.... .|...++. |
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~--~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G 465 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKG--EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-G 465 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEEC--TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-S
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeC--CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-C
Confidence 45566664 34 66676778889999986 4444443221 23456777774 44444433222 45555554 3
Q ss_pred ceeeeeccceecCceeEEeccCceecccccCCCeEEEEe-cCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCC
Q psy18018 530 EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS-SDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASET 608 (635)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 608 (635)
.....+... .-...+.++++++.+.|..+ +..+.|...|+. |+....+.. .......+|+...
T Consensus 466 ~~~~~l~~~----------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~----~~~~~P~glav~~- 529 (628)
T 4a0p_A 466 TEREVLFFS----------GLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED----SNILQPVGLTVFE- 529 (628)
T ss_dssp CSCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC----SSCSCEEEEEEET-
T ss_pred CCcEEEEec----------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEc----CCCCCcEEEEEEC-
Confidence 222222110 12245778899876555555 456889999985 444444421 2223456777755
Q ss_pred CeEEEEccCCCeeEeEEEEEe
Q psy18018 609 KLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 609 ~~~l~~~~~dg~~~~~l~~~d 629 (635)
+.+..+-..... |+.+|
T Consensus 530 ~~ly~tD~~~~~----i~~~~ 546 (628)
T 4a0p_A 530 NWLYWIDKQQQM----IEKID 546 (628)
T ss_dssp TEEEEEETTTTE----EEEEE
T ss_pred CEEEEEECCCCe----EEEEE
Confidence 444444444443 55554
No 299
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.21 E-value=0.14 Score=47.72 Aligned_cols=217 Identities=8% Similarity=0.043 Sum_probs=120.5
Q ss_pred EEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe--CCEEE-EEeCCCcEEEEEccCCcceeEE---------EEE
Q psy18018 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILV-SGNADSTVKVWDIVSGTKKLMF---------RIC 422 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~---------~~~ 422 (635)
+|+.+. ...|+..++........+. ......+++++ .+.|+ +-...+.|..+++......... ..+
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 123 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 123 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEE
Confidence 344333 3458888877555443333 33457888887 34444 4456778888888765433221 123
Q ss_pred eeCCcEE-EEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CC-EEEEEeCC-CcEEEEECCCCceeEEecCCCc
Q psy18018 423 LFDGVHV-VSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NN-ILVSGNAD-STVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 423 ~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~ 497 (635)
.+.+..| ++-...+.|.+.++........+...-....+++++ +. ++++-... +.|..+++.... ...+...
T Consensus 124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~-- 200 (349)
T 3v64_C 124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADT-- 200 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCS--
T ss_pred ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEEC--
Confidence 4434444 444456788888887544333333333445667765 34 44444444 778888876433 2333210
Q ss_pred ccccEEEEEec--CCEEE-EEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeE
Q psy18018 498 HQSAVTCLQFN--SRFVI-TSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574 (635)
Q Consensus 498 ~~~~v~~~~~~--~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v 574 (635)
.......+++| +..|+ +-...+.|..+++........+... ......+++ ..+.+.++-...+.|
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-----------~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-----------LPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-----------CSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-----------CCCceEEEE-ECCEEEEecCCCCeE
Confidence 22345667774 45444 4445678999998743322111110 123345666 356666766677889
Q ss_pred EEEeCCCCceEEee
Q psy18018 575 KLWDVKTGEFIRNL 588 (635)
Q Consensus 575 ~iwd~~~~~~~~~~ 588 (635)
..++..+|+.+..+
T Consensus 269 ~~~~~~~G~~~~~i 282 (349)
T 3v64_C 269 NSANKFTGKNQEII 282 (349)
T ss_dssp EEEETTTCCSCEEE
T ss_pred EEEEccCCCccEEe
Confidence 88887677655554
No 300
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.19 E-value=0.15 Score=47.62 Aligned_cols=184 Identities=5% Similarity=-0.023 Sum_probs=99.0
Q ss_pred EeeCCcEEEEE-eCCCcEEEEeCCCCceeeeeccCCccEEEEEec--C-CEEEEEeCCCcEEEEECCCCceeEEecCCCc
Q psy18018 422 CLFDGVHVVSG-SLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGQCLQTLSGRNK 497 (635)
Q Consensus 422 ~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 497 (635)
+.+.+..|... ...+.|..+++........+........+++++ + +++++-...+.|.+.++........+..
T Consensus 80 ~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--- 156 (349)
T 3v64_C 80 FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--- 156 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---
T ss_pred EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---
Confidence 34444444444 456788888887655433333222233445553 3 4556666678899999875433332322
Q ss_pred ccccEEEEEec--CCEE-EEEeCC-CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE-ecCCC
Q psy18018 498 HQSAVTCLQFN--SRFV-ITSSDD-GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT-SSDDG 572 (635)
Q Consensus 498 ~~~~v~~~~~~--~~~l-~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~ 572 (635)
.......++++ +..| ++-... +.|..+++..... ..+... .-...+.++++|++..|.. -...+
T Consensus 157 ~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~----------~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 157 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADT----------HLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCS----------SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEEC----------CCCCcceEEEeCCCCEEEEEECCCC
Confidence 22345667774 4444 444444 7788888764322 222110 1223577999986655544 45567
Q ss_pred eEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEe
Q psy18018 573 TVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLD 629 (635)
Q Consensus 573 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d 629 (635)
.|..+|+..... ..+. .........|++. ++.+..+-...+. |+.+|
T Consensus 226 ~I~~~~~dG~~~-~~~~----~~~~~~P~giav~-~~~ly~td~~~~~----V~~~~ 272 (349)
T 3v64_C 226 VIERANLDGSHR-KAVI----SQGLPHPFAITVF-EDSLYWTDWHTKS----INSAN 272 (349)
T ss_dssp EEEEEETTSCSC-EEEE----CSSCSSEEEEEEE-TTEEEEEETTTTE----EEEEE
T ss_pred EEEEEeCCCCce-EEEE----eCCCCCceEEEEE-CCEEEEecCCCCe----EEEEE
Confidence 899999875433 2221 1123345677773 4455555445554 55554
No 301
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.19 E-value=0.022 Score=52.21 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=78.1
Q ss_pred cEEEEEe--cCCEEEEEeCCC--cEEEEECCCCceeEEecCCCcccccEEEEE-ecCCE-EEEEeCCCcEEEEECCCCce
Q psy18018 458 LTSGMEL--RNNILVSGNADS--TVKVWDIVSGQCLQTLSGRNKHQSAVTCLQ-FNSRF-VITSSDDGTVKLWDVKTGEF 531 (635)
Q Consensus 458 ~v~~~~~--~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-l~~~~~d~~i~vwd~~~~~~ 531 (635)
...++.+ +++++++..... .|..+|..+++........ .......++ +.+.. +++-..++.|.++|..+++.
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC--CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 4566666 455555543322 4777777777654332211 111122333 33444 44444588899999875421
Q ss_pred -eeeecccee-cCceeEEeccCceecccccCCCeEEE-EecCCCeEEEEeCCC-Cce--EEeeeeccCCCCCceEEEEEe
Q psy18018 532 -STPLMSSFI-LNPFYFLIYSQPLLCPHLQFNSRFVI-TSSDDGTVKLWDVKT-GEF--IRNLVSLDSGGSGGVVWRIRA 605 (635)
Q Consensus 532 -~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~v~iwd~~~-~~~--~~~~~~~~~~~~~~~i~~l~~ 605 (635)
+........ ..... .-...+.+ +||+++|. +-...+.|..+|+.. ++. ...+.. ......|++
T Consensus 151 ~v~~~~~~~~~~~~~~---~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~gi~v 219 (306)
T 2p4o_A 151 SIWLEHPMLARSNSES---VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNIDDFAF 219 (306)
T ss_dssp EEEEECGGGSCSSTTC---CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCSSEEE
T ss_pred eEEEECCccccccccC---CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCCCeEE
Confidence 110000000 00000 00122334 78886554 445678999999875 331 111111 123456888
Q ss_pred CCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 606 SETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 606 s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+++|++.++...++. |..+|.
T Consensus 220 d~dG~l~va~~~~~~----V~~~~~ 240 (306)
T 2p4o_A 220 DVEGNLYGATHIYNS----VVRIAP 240 (306)
T ss_dssp BTTCCEEEECBTTCC----EEEECT
T ss_pred CCCCCEEEEeCCCCe----EEEECC
Confidence 999987776666665 555654
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.19 E-value=0.15 Score=47.67 Aligned_cols=232 Identities=12% Similarity=0.136 Sum_probs=125.6
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEE-eCCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV 427 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 427 (635)
.+|..+.++.-. ...+.+||+++.+.++.+.-.+ .|....| +++.|+..+. ..|.-|++....
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s------------- 136 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGES------------- 136 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSC-------------
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCC-------------
Confidence 566666666554 6789999999988888777654 4555555 4565555543 356777765311
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEe-------CCCcEEEEECCCCceeEEecCCCcc
Q psy18018 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN-------ADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
.-++++|.... + . ...|.....+ .++++..+ -.|.+.+|..+.+ ..+.+.+ |
T Consensus 137 --------~P~kvFdR~~~-L----~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG---h 197 (494)
T 1bpo_A 137 --------QPVKMFDRHSS-L----A--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG---H 197 (494)
T ss_dssp --------CCEEEEECCGG-G----T--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC---S
T ss_pred --------Cchhheecchh-c----c--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee---e
Confidence 11223322110 0 0 1122222222 22222211 1377899998753 4455665 5
Q ss_pred cccEEEEEecC-----CEEEEEeCC---CcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 499 QSAVTCLQFNS-----RFVITSSDD---GTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 499 ~~~v~~~~~~~-----~~l~~~~~d---~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
...-..+..+| ..++.+... +.+++-++... .....+......-.+....-.+--.++..|+.-..+..-+
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 55544454443 234444432 78999988543 1111111100000000001123345677888888888889
Q ss_pred CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
.-|.+.+||++++.++..-+ -...+|..-+...+..=++.....|.
T Consensus 278 K~G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred cCceEEEEecccceeeeeec-----ccCCceEEecccCCCCcEEEEccCce
Confidence 99999999999999987764 34455665555444333344446665
No 303
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.18 E-value=0.14 Score=47.04 Aligned_cols=219 Identities=9% Similarity=0.071 Sum_probs=119.6
Q ss_pred EEEEecCCCeEEEEEccCCceEE-eeeCC--CcceeEEEEeCCEEEEEeC-----C--C----cEEEEEccCCccee---
Q psy18018 355 HVVSGSLDTSIRVWEAESGNLRH-TLMGH--QSLTSGMELRNNILVSGNA-----D--S----TVKVWDIVSGTKKL--- 417 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~~~~~-~~~~~--~~~v~~l~~~~~~l~s~~~-----d--g----~i~iwd~~~~~~~~--- 417 (635)
.++.|+ ..+..||..+++-.. .+... ..........+.+++.|+. . . .+..||..+.+-..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 568999998776432 12111 1122222234667777763 1 1 26677776654211
Q ss_pred ------EEEEEeeCCcEEEEEeCC--------CcEEEEeCCCCceee--eeccCCccEEEEEecCCEEEEEeC-C-----
Q psy18018 418 ------MFRICLFDGVHVVSGSLD--------TSIRVWEAESGNLRH--TLMGHQSLTSGMELRNNILVSGNA-D----- 475 (635)
Q Consensus 418 ------~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~-d----- 475 (635)
.......+++.++.|+.+ ..+.+||..+.+-.. .+........++..++.+++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 112234467777777642 458889988764322 222222233344567777778776 2
Q ss_pred CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCC-----cEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG-----TVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550 (635)
Q Consensus 476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (635)
..+.+||+.+.+-.. +...........++..++++++.|+.++ .+.+||..+.+........ . .
T Consensus 165 ~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~-------~ 233 (315)
T 4asc_A 165 NKMCVYDPKKFEWKE-LAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---Q-------E 233 (315)
T ss_dssp CCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---S-------C
T ss_pred ceEEEEeCCCCeEEE-CCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---C-------c
Confidence 468999988764322 2211112223344556888888888654 4888999887544322110 0 0
Q ss_pred CceecccccCCCeEEEEecCC--------------CeEEEEeCCCCceEEe
Q psy18018 551 QPLLCPHLQFNSRFVITSSDD--------------GTVKLWDVKTGEFIRN 587 (635)
Q Consensus 551 ~~v~~~~~s~~~~~l~~~~~d--------------~~v~iwd~~~~~~~~~ 587 (635)
.....+..-++++++.|+.+ ..+.+||+++.+....
T Consensus 234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 00111122367888888764 2477899988776544
No 304
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.16 E-value=0.056 Score=52.19 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=87.3
Q ss_pred EEEEEecC----CEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCC----c-EEEEECC
Q psy18018 459 TSGMELRN----NILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDG----T-VKLWDVK 527 (635)
Q Consensus 459 v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~----~-i~vwd~~ 527 (635)
..++++++ ..|..+...+.|+.+|+.+++...... .......+++ +++ |+.+...+ . +...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 34666663 455555544889999998776554433 3344667777 467 44444321 1 2222221
Q ss_pred CCceeeeeccceecCceeEEeccCceecccccC-CCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeC
Q psy18018 528 TGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRAS 606 (635)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 606 (635)
+..... ...........++++| ++.+.++-..++.|+.+|..+++....+... +....-..++|+
T Consensus 216 -~~~~~~----------~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---~~~~~~~~ia~d 281 (433)
T 4hw6_A 216 -SGFTER----------LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---DTKGSNFHIVWH 281 (433)
T ss_dssp -GTTCCE----------EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---SCCSSCEEEEEC
T ss_pred -CCeecc----------ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---CCCCCcccEEEe
Confidence 111100 0111233457789999 7777766667889999999888763443222 112223479999
Q ss_pred CCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 607 ETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 607 ~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
|+|++|.++..... +|+.+|++.
T Consensus 282 pdG~~LYvad~~~~---~I~~~~~d~ 304 (433)
T 4hw6_A 282 PTGDWAYIIYNGKH---CIYRVDYNR 304 (433)
T ss_dssp TTSSEEEEEETTTT---EEEEEEBCT
T ss_pred CCCCEEEEEeCCCC---EEEEEeCCC
Confidence 99996665555432 477777653
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.028 Score=50.78 Aligned_cols=166 Identities=7% Similarity=0.041 Sum_probs=98.5
Q ss_pred EEEEecC--CEEEEEe-CCCcEEEEECCCCceeEE-ecCC---CcccccEEEEEe---c--CCEEEEEe-----------
Q psy18018 460 SGMELRN--NILVSGN-ADSTVKVWDIVSGQCLQT-LSGR---NKHQSAVTCLQF---N--SRFVITSS----------- 516 (635)
Q Consensus 460 ~~~~~~~--~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~~---~~~~~~v~~~~~---~--~~~l~~~~----------- 516 (635)
.+..|+. ..+..++ ..++|..||...+..... +... ......+..+.+ | ++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3566753 4444444 789999999975543332 2210 011224577888 4 45555443
Q ss_pred --CCCcEEEEECC---CCceeeeeccceecCc---eeEEeccCceecccccCCCeEEEEecCC-CeEEEEeCCCCceEEe
Q psy18018 517 --DDGTVKLWDVK---TGEFSTPLMSSFILNP---FYFLIYSQPLLCPHLQFNSRFVITSSDD-GTVKLWDVKTGEFIRN 587 (635)
Q Consensus 517 --~d~~i~vwd~~---~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~v~iwd~~~~~~~~~ 587 (635)
.+..|..||+. +++.+........... ... .-......++..++|+..++++.. +.|...+.. |+.+..
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g-~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG-KRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS-SCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc-ccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEee
Confidence 26779999999 7776544332100000 000 001246788999999999988888 887777755 333333
Q ss_pred eeecc-CCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 588 LVSLD-SGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 588 ~~~~~-~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
+.... .....-....+++.|||.+|++....|. |+.+|..
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~----L~~fD~~ 214 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA----LTAFDVS 214 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS----EEEEECS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCe----EEEEcCC
Confidence 32111 1112234668899999998888877776 8888865
No 306
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.13 E-value=0.02 Score=50.06 Aligned_cols=172 Identities=10% Similarity=0.076 Sum_probs=101.0
Q ss_pred eeccCCccEEEEEecC--C-EEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEE
Q psy18018 451 TLMGHQSLTSGMELRN--N-ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525 (635)
Q Consensus 451 ~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd 525 (635)
.+.+-...+.++++++ + ++++...++.|...|.. ++.++.+... .....-.+++ ++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 4556666788999863 3 56667888999999998 8888877531 1234566666 455556655678899999
Q ss_pred CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCC---CCceEEeeee--ccCCCCCceE
Q psy18018 526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK---TGEFIRNLVS--LDSGGSGGVV 600 (635)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~~--~~~~~~~~~i 600 (635)
+.....+....... -+......+.....++++|+++.|.++.+.....||.+. ....+..+.. +........+
T Consensus 98 v~~~~~i~~~~~~~--~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIK--IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEE--CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeec--cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 87655322111110 011011235567899999998777777666555666654 1111111110 0001123346
Q ss_pred EEEEeCCCC-eEEEEccCCCeeEeEEEEEeee
Q psy18018 601 WRIRASETK-LVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 601 ~~l~~s~d~-~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
.++++.|.. ++++...++.. |..+|.+
T Consensus 176 S~l~~dp~tg~lliLS~~s~~----L~~~d~~ 203 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRA----LQEVTLV 203 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTE----EEEECTT
T ss_pred eeEEEcCCCCeEEEEECCCCe----EEEEcCC
Confidence 888998864 45555555544 7777654
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.06 E-value=0.16 Score=45.52 Aligned_cols=249 Identities=8% Similarity=0.040 Sum_probs=137.4
Q ss_pred CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-eCCEEEEe
Q psy18018 161 DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-AGNIIISG 239 (635)
Q Consensus 161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s~ 239 (635)
+.+|.|-|+.++....+...... .....|....++.- ....+.++|+++.+.++.+.-. ..|.-=.| +.+.|+-.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad--sAIMnP~~~ViALr-ag~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lV 123 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALV 123 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS--EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEE
T ss_pred CCEEEEEECCCCCCccccccccc--eeeeCCCccEEEEe-cCCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEE
Confidence 44788999988765433222222 22223444444444 4789999999999999888754 45555555 45555555
Q ss_pred eCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhHhhcccccceeEee
Q psy18018 240 STDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLA 319 (635)
Q Consensus 240 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (635)
+ +..|.-|++........ ..+.. +.+ ....+..
T Consensus 124 T-~taVyHWs~~~~s~P~k-vFdR~-------------~~L---------~~~QIIn----------------------- 156 (365)
T 2xzh_A 124 T-DNAVYHWSMEGESQPVK-MFDRH-------------SSL---------AGCQIIN----------------------- 156 (365)
T ss_dssp E-SSEEEEEESSTTCCCEE-EEECC-------------GGG---------TTCEEEE-----------------------
T ss_pred c-CCcEEEEcccCCCCCce-eeecc-------------hhc---------ccceEEE-----------------------
Confidence 4 45789999765211000 00000 000 0001111
Q ss_pred cCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-------CCCeEEEEEccCCceEEeeeCCCcceeEEEEe
Q psy18018 320 EDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-------LDTSIRVWEAESGNLRHTLMGHQSLTSGMELR 392 (635)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~ 392 (635)
...+++.++++..+ -.|.+.+|+.+ .+..+.+.+|...-..+...
T Consensus 157 ---------------------------Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~ 208 (365)
T 2xzh_A 157 ---------------------------YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKME 208 (365)
T ss_dssp ---------------------------EEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCT
T ss_pred ---------------------------EEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccceeeeeeeeeEEEecC
Confidence 11222333332211 13789999987 45556777776654444443
Q ss_pred CC-----EEEEEeC---CCcEEEEEccCC---cc---eeEEEE---------------EeeCCcEEEEEeCCCcEEEEeC
Q psy18018 393 NN-----ILVSGNA---DSTVKVWDIVSG---TK---KLMFRI---------------CLFDGVHVVSGSLDTSIRVWEA 443 (635)
Q Consensus 393 ~~-----~l~s~~~---dg~i~iwd~~~~---~~---~~~~~~---------------~~~~~~~l~~~~~d~~i~~~d~ 443 (635)
++ +++.+.. .+++.+.++... .. .....+ .++.-..+..-+.-|.+++||+
T Consensus 209 g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDl 288 (365)
T 2xzh_A 209 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 288 (365)
T ss_dssp TCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEc
Confidence 21 2333322 258888888543 11 112222 3344556888889999999999
Q ss_pred CCCceeeeeccCCccEEEEEe--cCCEEEEEeCCCcEEEEECCCCce
Q psy18018 444 ESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQC 488 (635)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 488 (635)
+++.++..-+-....|..-+. +..-++.....|.|.--.+.+...
T Consensus 289 eTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 289 ETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp TTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred ccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 999998776655555554444 334555556777776666655443
No 308
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.15 Score=47.01 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=117.3
Q ss_pred cEEEEecCCCeEEEEEccCCceEEe-eeC--CCcceeEEEEeCCEEEEEeC----CC-------cEEEEEccCCccee--
Q psy18018 354 VHVVSGSLDTSIRVWEAESGNLRHT-LMG--HQSLTSGMELRNNILVSGNA----DS-------TVKVWDIVSGTKKL-- 417 (635)
Q Consensus 354 ~~l~~~~~dg~i~v~~~~~~~~~~~-~~~--~~~~v~~l~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~-- 417 (635)
..++.|+. .+..||..+.+-... ... .......+...+.+++.|+. ++ .+..||..+.+-..
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 44555553 488999887764331 111 11112222234667777763 12 16677776543221
Q ss_pred -------EEEEEeeCCcEEEEEeCC-------CcEEEEeCCCCceeee--eccCCccEEEEEecCCEEEEEeC------C
Q psy18018 418 -------MFRICLFDGVHVVSGSLD-------TSIRVWEAESGNLRHT--LMGHQSLTSGMELRNNILVSGNA------D 475 (635)
Q Consensus 418 -------~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~------d 475 (635)
.......+++.++.|+.+ ..+.+||..+.+-... +......-.++..++.+++.|+. -
T Consensus 95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence 112234467777777754 3578888887654322 11111122233456777777764 2
Q ss_pred CcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCC-----CcEEEEECCCCceeeeeccceecCceeEEecc
Q psy18018 476 STVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD-----GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYS 550 (635)
Q Consensus 476 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (635)
..+.+||+.+.+-...-..+ .......++..++++++.|+.+ ..+.+||..+.+....-... .+
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~------- 243 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP---QE------- 243 (318)
T ss_dssp CCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS---SC-------
T ss_pred ceEEEEcCCCCEEEECCCCC-CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC---Cc-------
Confidence 45899999876533221111 1222234455688888888754 34778998887644321110 00
Q ss_pred CceecccccCCCeEEEEecCC--------------CeEEEEeCCCCceEEe
Q psy18018 551 QPLLCPHLQFNSRFVITSSDD--------------GTVKLWDVKTGEFIRN 587 (635)
Q Consensus 551 ~~v~~~~~s~~~~~l~~~~~d--------------~~v~iwd~~~~~~~~~ 587 (635)
.....+...++++++.|+.+ ..+.+||+.+.+....
T Consensus 244 -r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 244 -RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp -CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred -ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 00111122367888887754 3588899988876554
No 309
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.05 E-value=0.19 Score=46.13 Aligned_cols=108 Identities=8% Similarity=0.013 Sum_probs=56.8
Q ss_pred ceEEEEe---cCCEEEEEeCCCeEEEEeCCCccceee-ccc--cceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy18018 144 AVRCVQY---DGKLVVSGAYDYMVKIWNPDTEECLHA-ELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR 217 (635)
Q Consensus 144 ~v~~l~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 217 (635)
...++.| ++...++-...+.|..+++........ ... ..+.-....+..+..+++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4567788 345555656678899999877632111 111 1111122222233444555566788888876543322
Q ss_pred EEeCCCCCeEEEEee--CCEEEEee--CceeEEEeccc
Q psy18018 218 TLIGHTGGVWSSQMA--GNIIISGS--TDRTLKGWSNA 251 (635)
Q Consensus 218 ~~~~h~~~v~~~~~~--~~~l~s~~--~dg~i~~w~~~ 251 (635)
.+.........++++ +..|+... ..+.|...+++
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 233444556777775 34444443 24566665544
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.01 E-value=0.19 Score=45.50 Aligned_cols=149 Identities=9% Similarity=0.036 Sum_probs=87.8
Q ss_pred EEEEEe-CCCcEEEEeCCCCceeee-ecc----C--CccEEEEEe---cC--CEEEEEe-------------CCCcEEEE
Q psy18018 428 HVVSGS-LDTSIRVWEAESGNLRHT-LMG----H--QSLTSGMEL---RN--NILVSGN-------------ADSTVKVW 481 (635)
Q Consensus 428 ~l~~~~-~d~~i~~~d~~~~~~~~~-~~~----~--~~~v~~~~~---~~--~~l~s~~-------------~dg~i~iw 481 (635)
.+..++ ..++|..|+...+..... +.+ . ...+.++.+ ++ .++++.. .+..+..|
T Consensus 26 ~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~ 105 (334)
T 2p9w_A 26 VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSF 105 (334)
T ss_dssp EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEE
T ss_pred EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEE
Confidence 344443 678888888765543322 221 1 113467777 43 3444433 26779999
Q ss_pred ECC---CCceeEEecCCCc----------ccccEEEEEe--cCCEEEEEeCC-CcEEEEECCCCceeeeeccceecCcee
Q psy18018 482 DIV---SGQCLQTLSGRNK----------HQSAVTCLQF--NSRFVITSSDD-GTVKLWDVKTGEFSTPLMSSFILNPFY 545 (635)
Q Consensus 482 d~~---~~~~~~~~~~~~~----------~~~~v~~~~~--~~~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~ 545 (635)
|+. +++.+........ .......++. +|+..++++.- +.|...+.... ....+.......
T Consensus 106 Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~--- 181 (334)
T 2p9w_A 106 NLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNG--- 181 (334)
T ss_dssp ESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCS---
T ss_pred cCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCc---
Confidence 999 7776665542100 0123666777 48888888877 77666665533 222221110000
Q ss_pred EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018 546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 546 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~ 582 (635)
......+.++++|||++|++....|.+..+|+.+.
T Consensus 182 --~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 182 --GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp --SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred --ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 01234678999999998888877999999998843
No 311
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.97 E-value=0.22 Score=45.69 Aligned_cols=92 Identities=10% Similarity=-0.094 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEE-eCCCcEEEEECCC---CeEEE-EEeCCCCCeEEEEee--C
Q psy18018 161 DYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSG-SDDNTLKVWSATT---GKCLR-TLIGHTGGVWSSQMA--G 233 (635)
Q Consensus 161 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~---~~~~~-~~~~h~~~v~~~~~~--~ 233 (635)
...|+..|+.+.+.................+.++.|+.+ ...+.|..+++.. +.... .+.........++++ +
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 356788888776544332222222223333344555544 4568899998875 12222 232222344566664 4
Q ss_pred C-EEEEeeCceeEEEecccc
Q psy18018 234 N-IIISGSTDRTLKGWSNAE 252 (635)
Q Consensus 234 ~-~l~s~~~dg~i~~w~~~~ 252 (635)
+ ..++-...+.|.+.++..
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp TEEEEEETTTTEEEEEETTS
T ss_pred CeEEEEECCCCEEEEEeCCC
Confidence 4 444545667787777554
No 312
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.88 E-value=0.26 Score=45.17 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=105.4
Q ss_pred ceEEEEecCcEE-EEecCCCeEEEEEccC----CceEEeeeCCCcceeEEEEe--CCE-EEEEeCCCcEEEEEccCCcce
Q psy18018 345 DLFGFQFDGVHV-VSGSLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELR--NNI-LVSGNADSTVKVWDIVSGTKK 416 (635)
Q Consensus 345 ~~~~~s~~~~~l-~~~~~dg~i~v~~~~~----~~~~~~~~~~~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~ 416 (635)
..+++++.+..| ++-...+.|..+++.. ......+...-.....++++ +.. .++-...+.|.+.++......
T Consensus 33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~ 112 (316)
T 1ijq_A 33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 112 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE
Confidence 345677755444 4545568899998875 22222232222345677775 444 445566788988888754332
Q ss_pred eEEE---------EEeeCCcEEEEEeCC--CcEEEEeCCCCceeeee-ccCCccEEEEEec--CCEEE-EEeCCCcEEEE
Q psy18018 417 LMFR---------ICLFDGVHVVSGSLD--TSIRVWEAESGNLRHTL-MGHQSLTSGMELR--NNILV-SGNADSTVKVW 481 (635)
Q Consensus 417 ~~~~---------~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iw 481 (635)
.... .+.|.+..|+.+... +.|..+++. ++....+ ...-....+++++ ++.|. +-...+.|..+
T Consensus 113 ~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~ 191 (316)
T 1ijq_A 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191 (316)
T ss_dssp EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence 2221 355556655555543 678888875 3333333 2223456677775 44544 44456789999
Q ss_pred ECCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018 482 DIVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 536 (635)
|+.... ...+............++++ +.++++-...+.|..++..+++....+.
T Consensus 192 d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 192 DVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 987432 33332110112234556665 4455555567889999987777555543
No 313
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.87 E-value=0.19 Score=47.15 Aligned_cols=228 Identities=9% Similarity=0.051 Sum_probs=119.0
Q ss_pred EEecCcEEEEecC-CCeEEEEEccC--CceE--Eeee-CCCcceeEEEEeCCEEEEEeC-C---------CcEEEEEccC
Q psy18018 349 FQFDGVHVVSGSL-DTSIRVWEAES--GNLR--HTLM-GHQSLTSGMELRNNILVSGNA-D---------STVKVWDIVS 412 (635)
Q Consensus 349 ~s~~~~~l~~~~~-dg~i~v~~~~~--~~~~--~~~~-~~~~~v~~l~~~~~~l~s~~~-d---------g~i~iwd~~~ 412 (635)
...++..++.|+. ...+.+||..+ .+-. ..+. .....-.+....+.+++.|+. + ..+..||+.+
T Consensus 16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3446777677654 35688899864 2221 1122 112222333445666666665 2 3578888766
Q ss_pred Ccce----------eEEEEEeeCCcEEEEEeCC---------------------------------------CcEEEEeC
Q psy18018 413 GTKK----------LMFRICLFDGVHVVSGSLD---------------------------------------TSIRVWEA 443 (635)
Q Consensus 413 ~~~~----------~~~~~~~~~~~~l~~~~~d---------------------------------------~~i~~~d~ 443 (635)
.+-. ........+++.++.|+.+ ..+.+||.
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 4321 1122344677888888754 57889998
Q ss_pred CCCceee--eeccC-CccEEEEEecCCEEEEEeC------CCcEEEEEC--CCCceeEEecCCCcc--cccEEEEEecCC
Q psy18018 444 ESGNLRH--TLMGH-QSLTSGMELRNNILVSGNA------DSTVKVWDI--VSGQCLQTLSGRNKH--QSAVTCLQFNSR 510 (635)
Q Consensus 444 ~~~~~~~--~~~~~-~~~v~~~~~~~~~l~s~~~------dg~i~iwd~--~~~~~~~~~~~~~~~--~~~v~~~~~~~~ 510 (635)
.+.+-.. .+... .....++..++.+++.|+. ...+..||+ .+.+ -..+...... .....++..+++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECCE
Confidence 8765432 22211 1113334456667777664 345777887 3332 2222211001 112334556888
Q ss_pred EEEEEeCC----------------------CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEe
Q psy18018 511 FVITSSDD----------------------GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITS 568 (635)
Q Consensus 511 ~l~~~~~d----------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 568 (635)
+++.|+.+ ..+.+||+.+.+....-.. + .......+...++++++.|
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----p------~~r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-----S------QGRAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-----S------SCCBSSEEEEETTEEEEEE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-----C------CCcccceeEEeCCEEEEEe
Confidence 88888742 2578899887764432111 0 0111122233478888888
Q ss_pred cCCC------eEEEEeCCCCceEEee
Q psy18018 569 SDDG------TVKLWDVKTGEFIRNL 588 (635)
Q Consensus 569 ~~d~------~v~iwd~~~~~~~~~~ 588 (635)
+.++ .|.++++++++.+...
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 8653 4666788888877655
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.87 E-value=0.3 Score=45.74 Aligned_cols=259 Identities=8% Similarity=0.035 Sum_probs=144.0
Q ss_pred cCCEEEEE---eCCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeE
Q psy18018 151 DGKLVVSG---AYDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVW 227 (635)
Q Consensus 151 ~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 227 (635)
.++++..- +.+.+|.|-|+.++....+...... .....+....++.- ....+.++|+++.+.++.+.-... |.
T Consensus 34 SDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad--sAIMnP~~~iiALr-ag~~lQiFnle~K~klks~~~~e~-Vv 109 (494)
T 1bpo_A 34 SDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDD-VT 109 (494)
T ss_dssp ETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS--EEEECSSSSCEEEE-ETTEEEEEETTTTEEEEEEECSSC-CC
T ss_pred cCceEEEEecCCCCCeEEEEECCCCCcceecccccc--eeeeCCCCcEEEEe-cCCeEEEEchHHhhhhcceecCCC-ce
Confidence 34444443 2344788999988765433222222 22233334444444 478999999999999988875554 44
Q ss_pred EEEe-eCCEEEEeeCceeEEEecccceeeeccccccccCccceeeeeeeeccccccceeeccccceeeEEEeecCchhhH
Q psy18018 228 SSQM-AGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLL 306 (635)
Q Consensus 228 ~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (635)
-=.| +.+.|+-.+ +..|.-|++.+...... +.+.. +.+ ....+..
T Consensus 110 fWkWis~~~l~lVT-~taVyHWsi~~~s~P~k-vFdR~-------------~~L---------~~~QIIn---------- 155 (494)
T 1bpo_A 110 FWKWISLNTVALVT-DNAVYHWSMEGESQPVK-MFDRH-------------SSL---------AGCQIIN---------- 155 (494)
T ss_dssp EEEEEETTEEEEEC-SSEEEEEESSSSCCCEE-EEECC-------------GGG---------TTCEEEE----------
T ss_pred EEEecCCCeEEEEc-CCeeEEecccCCCCchh-heecc-------------hhc---------ccceEEE----------
Confidence 4444 566666554 46799999865211000 00000 000 0011111
Q ss_pred hhcccccceeEeecCCcchhhhhhhhhhhccccccCCCceEEEEecCcEEEEec-------CCCeEEEEEccCCceEEee
Q psy18018 307 RAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGS-------LDTSIRVWEAESGNLRHTL 379 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~v~~~~~~~~~~~~ 379 (635)
...+++.++++..+ -.|.+.+|+.+. +..+.+
T Consensus 156 ----------------------------------------Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~i 194 (494)
T 1bpo_A 156 ----------------------------------------YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPI 194 (494)
T ss_dssp ----------------------------------------EEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEE
T ss_pred ----------------------------------------EEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchh
Confidence 11223333333211 247899999874 455677
Q ss_pred eCCCcceeEEEEeC-----CEEEEEeC---CCcEEEEEccCC---cc---eeEEE---------------EEeeCCcEEE
Q psy18018 380 MGHQSLTSGMELRN-----NILVSGNA---DSTVKVWDIVSG---TK---KLMFR---------------ICLFDGVHVV 430 (635)
Q Consensus 380 ~~~~~~v~~l~~~~-----~~l~s~~~---dg~i~iwd~~~~---~~---~~~~~---------------~~~~~~~~l~ 430 (635)
.+|...-..+...+ ..+..+.. .+.+.+.++... .. ..... ..++.-..+.
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 88876655555542 23444433 278889888543 11 11111 2344566788
Q ss_pred EEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCce
Q psy18018 431 SGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQC 488 (635)
Q Consensus 431 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 488 (635)
.-+.-|.+++||++++.++..-+-....|..-+.+ ..-++.....|.|.--.+.+...
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 88899999999999999887766555555544442 33555555777666666555443
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.76 E-value=0.071 Score=49.76 Aligned_cols=159 Identities=9% Similarity=0.071 Sum_probs=92.9
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeEEecCCC-cccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeee------
Q psy18018 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRN-KHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPL------ 535 (635)
Q Consensus 465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~------ 535 (635)
++..++.+- ++.||.-++......+.+..+. -.-..|..+.. +|++||..+ +..|.|-.+..+.....-
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444432 3667777776444444444321 01113333444 789998886 457999999854321110
Q ss_pred -c-cceecCceeEEeccCceecccccCC---CeEEEEecCCCeEEEEeCCCCceEE-eee----eccCCCCCceEEEEEe
Q psy18018 536 -M-SSFILNPFYFLIYSQPLLCPHLQFN---SRFVITSSDDGTVKLWDVKTGEFIR-NLV----SLDSGGSGGVVWRIRA 605 (635)
Q Consensus 536 -~-~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~v~iwd~~~~~~~~-~~~----~~~~~~~~~~i~~l~~ 605 (635)
. ......+.. .....+|..+.|+|- +..|++-..|+.|++||+....... .+. .+........|.+++|
T Consensus 109 ~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 0 011111111 112567999999994 5688999999999999998632111 121 1111223367999999
Q ss_pred CCCCeEEEE--ccCCCeeEeEEEEEee
Q psy18018 606 SETKLVCAV--GSRNGTEETKLLVLDF 630 (635)
Q Consensus 606 s~d~~~l~~--~~~dg~~~~~l~~~d~ 630 (635)
.+++-.|.+ .+++|. ||.+.+
T Consensus 188 g~~~lTLYvl~~t~~GD----IYAlcP 210 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGD----IFAFYP 210 (452)
T ss_dssp CTTSSCEEEEECTTSCE----EEEESS
T ss_pred cCCCcEEEEEecCCCCC----EEEECC
Confidence 999987777 458887 777654
No 316
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.76 E-value=0.16 Score=47.07 Aligned_cols=144 Identities=10% Similarity=0.038 Sum_probs=78.2
Q ss_pred CCCcEEEEECCCCc-eeEEec--C--CCcccccEEEEEe----cCC-EEEEE-eC--CCcEEEEECCCCceeeeecccee
Q psy18018 474 ADSTVKVWDIVSGQ-CLQTLS--G--RNKHQSAVTCLQF----NSR-FVITS-SD--DGTVKLWDVKTGEFSTPLMSSFI 540 (635)
Q Consensus 474 ~dg~i~iwd~~~~~-~~~~~~--~--~~~~~~~v~~~~~----~~~-~l~~~-~~--d~~i~vwd~~~~~~~~~~~~~~~ 540 (635)
.+|.|.++|+++.. ...++. + .....-....+.+ ++. +|+.+ .. +.++.+|++..+...........
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 122222 1 1112234445554 343 34444 33 46788887765432222221111
Q ss_pred cCceeEEeccCceecccccCCCeEEEEecC-----------------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEE
Q psy18018 541 LNPFYFLIYSQPLLCPHLQFNSRFVITSSD-----------------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRI 603 (635)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 603 (635)
.. --...+.+.+.++|++.++... .|.|.-+|. ++...... .-.....+
T Consensus 161 g~------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~------~l~~pNGi 226 (355)
T 3sre_A 161 HK------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE------GFDFANGI 226 (355)
T ss_dssp CT------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEE------EESSEEEE
T ss_pred cC------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeec------CCcccCcc
Confidence 11 1234678889999998887641 244555554 33222221 12346789
Q ss_pred EeCCCCeEEEEccCCCeeEeEEEEEeeecCC
Q psy18018 604 RASETKLVCAVGSRNGTEETKLLVLDFDVDS 634 (635)
Q Consensus 604 ~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~~ 634 (635)
+||||++.|.++..... +||.||++.++
T Consensus 227 a~spDg~~lYvadt~~~---~I~~~~~~~~g 254 (355)
T 3sre_A 227 NISPDGKYVYIAELLAH---KIHVYEKHANW 254 (355)
T ss_dssp EECTTSSEEEEEEGGGT---EEEEEEECTTS
T ss_pred eECCCCCEEEEEeCCCC---eEEEEEECCCC
Confidence 99999988887765443 58888887654
No 317
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.68 E-value=0.46 Score=45.22 Aligned_cols=191 Identities=13% Similarity=0.059 Sum_probs=108.5
Q ss_pred ceEEEEecCcEEE-EecCCCeEEEEEccCC----ceEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCcce
Q psy18018 345 DLFGFQFDGVHVV-SGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKK 416 (635)
Q Consensus 345 ~~~~~s~~~~~l~-~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~ 416 (635)
..+++++.+..|+ +-...+.|+.+++... .....+.........++++ +. +.++-...+.|.+.++......
T Consensus 115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~ 194 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence 3456776544444 4445678888887652 2233333334456777776 34 4455556778888888765433
Q ss_pred eEEE---------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEE
Q psy18018 417 LMFR---------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWD 482 (635)
Q Consensus 417 ~~~~---------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd 482 (635)
.... .+.|.+.+|+.... .+.|...++............-....+++++ +..|..+ ...+.|..+|
T Consensus 195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274 (400)
T ss_dssp EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence 3322 35555556655553 3678888876443333333333456677775 4455444 4567899999
Q ss_pred CCCCceeEEecCCCcccccEEEEEec-CCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018 483 IVSGQCLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGTVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 536 (635)
+........+... ........++.+ +.++++-...+.|..++..+++....+.
T Consensus 275 ~dG~~~~~~~~~~-~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 275 VNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TTSCCCEEEEECS-STTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCccEEEEeCC-CCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 8654332222211 112234456664 4555566667889999988887665554
No 318
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.61 E-value=0.88 Score=47.52 Aligned_cols=190 Identities=13% Similarity=0.034 Sum_probs=107.5
Q ss_pred ceEEEEecC-cEEEEecCCCeEEEEEccCC----ceEEeeeCCCcceeEEEEe--C-CEEEEEeCCCcEEEEEccCCcce
Q psy18018 345 DLFGFQFDG-VHVVSGSLDTSIRVWEAESG----NLRHTLMGHQSLTSGMELR--N-NILVSGNADSTVKVWDIVSGTKK 416 (635)
Q Consensus 345 ~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~----~~~~~~~~~~~~v~~l~~~--~-~~l~s~~~dg~i~iwd~~~~~~~ 416 (635)
..+++.+.. ..+++-...+.|+.+++... .....+........+|+++ + .+.++-...+.|.+.++......
T Consensus 427 ~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~ 506 (791)
T 3m0c_C 427 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 506 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred EEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE
Confidence 446666644 44455555678888887642 2233333344556778876 4 45555566788999888765433
Q ss_pred eEE---------EEEeeCCcEEEEEeC--CCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEE-eCCCcEEEEE
Q psy18018 417 LMF---------RICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSG-NADSTVKVWD 482 (635)
Q Consensus 417 ~~~---------~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd 482 (635)
... .++.|.+.+|+.... .+.|...++........+...-....+|+++ ...|..+ ...+.|...+
T Consensus 507 ~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 322 134555555655553 2678888886444433333333466777775 4444444 4557899999
Q ss_pred CCCCceeEEecCCCcccccEEEEEecCCEEE-EEeCCCcEEEEECCCCceeeee
Q psy18018 483 IVSGQCLQTLSGRNKHQSAVTCLQFNSRFVI-TSSDDGTVKLWDVKTGEFSTPL 535 (635)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~ 535 (635)
+........+.... ......+|++.+.+|+ +-...+.|...+..+++.+..+
T Consensus 587 ~dG~~~~~v~~~~~-~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 587 VNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCceEEEecCCC-ccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 86544333332211 1223446666554544 4446678888888777655544
No 319
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.56 E-value=0.45 Score=43.56 Aligned_cols=212 Identities=9% Similarity=0.063 Sum_probs=115.6
Q ss_pred CCeEEEEEccCCc-eEEeeeCCCcceeEEEEe--CC-EEEEEeCCCcEEEEEccCCccee-EE---------EEEeeCCc
Q psy18018 362 DTSIRVWEAESGN-LRHTLMGHQSLTSGMELR--NN-ILVSGNADSTVKVWDIVSGTKKL-MF---------RICLFDGV 427 (635)
Q Consensus 362 dg~i~v~~~~~~~-~~~~~~~~~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~-~~---------~~~~~~~~ 427 (635)
...|+..++.... .............++.|+ ++ +.++-...+.|..+++....... .. ..+.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4578888987653 111111122356678887 34 44455567788888887663211 11 12333333
Q ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEec--CCEEEEEe--CCCcEEEEECCCCceeEEecCCCcccccE
Q psy18018 428 -HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR--NNILVSGN--ADSTVKVWDIVSGQCLQTLSGRNKHQSAV 502 (635)
Q Consensus 428 -~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 502 (635)
.+++-...+.|.++++........+........+++++ +..|..+. ..+.|...++.... ...+... .-...
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~--~l~~P 168 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINS--EIYWP 168 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECS--SCSCE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEEC--CCCCc
Confidence 34444456788888876543332232333445666665 34554444 35778888876332 2332210 22334
Q ss_pred EEEEec--CCEEEE-EeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeC
Q psy18018 503 TCLQFN--SRFVIT-SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDV 579 (635)
Q Consensus 503 ~~~~~~--~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~ 579 (635)
..+++| +..|+. -+..+.|..+|+..... ..+... .......+++. .+.++.+-...+.|..++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~----------~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKG----------SLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS----------CCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecC----------CCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 667774 455544 44567899999864322 222110 11223455554 4466666667789999998
Q ss_pred CCCceEEee
Q psy18018 580 KTGEFIRNL 588 (635)
Q Consensus 580 ~~~~~~~~~ 588 (635)
.+|+.+..+
T Consensus 237 ~~G~~~~~i 245 (318)
T 3sov_A 237 YTGEGLREI 245 (318)
T ss_dssp TTCCSCEEE
T ss_pred CCCCceEEE
Confidence 777765544
No 320
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.32 E-value=0.77 Score=43.69 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCcceEEEEec--CCEE-EEEeCCCeEEEEeCCC
Q psy18018 121 DATLRVWHIESGECLHVLVGHLAAVRCVQYD--GKLV-VSGAYDYMVKIWNPDT 171 (635)
Q Consensus 121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~~--~~~l-~s~~~dg~v~iwd~~~ 171 (635)
...|+..++...+....+ .....+..++|+ ++.| ++-...+.|..+++..
T Consensus 91 ~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 356777777665544443 345567888883 4444 4445678888888865
No 321
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.12 E-value=1.2 Score=46.08 Aligned_cols=185 Identities=9% Similarity=0.080 Sum_probs=91.4
Q ss_pred cEEEEeCCCCceee--eeccCCccEEEEEe-cCCEEEEEeCCC--cEEEEECCCCceeEEecC--CCcccccEEEEEec-
Q psy18018 437 SIRVWEAESGNLRH--TLMGHQSLTSGMEL-RNNILVSGNADS--TVKVWDIVSGQCLQTLSG--RNKHQSAVTCLQFN- 508 (635)
Q Consensus 437 ~i~~~d~~~~~~~~--~~~~~~~~v~~~~~-~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~- 508 (635)
.+.+||..+.+-.. .+......-.+..+ ++.+++.|+.++ .+.+||+.+.+-...-.. .........++.++
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred cEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence 36667776643221 12212222234443 777888887654 699999987653222110 00011122334444
Q ss_pred --CCEEEEEeC--C-----CcEEEEECCCCce-----eeeeccceecCceeEEeccCceecccccCCCeEEEEecC----
Q psy18018 509 --SRFVITSSD--D-----GTVKLWDVKTGEF-----STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD---- 570 (635)
Q Consensus 509 --~~~l~~~~~--d-----~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---- 570 (635)
++.++.|+. + ..+.+||+.+.+. -..+.. .. + ....-.+++...++++++.|+.
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-~p--~-----~~R~~~~~~~~~~~~iyv~GG~~~~~ 620 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-HP--L-----FQRYGSQIKYITPRKLLIVGGTSPSG 620 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-CG--G-----GCCBSCEEEEEETTEEEEECCBCSSC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-CC--C-----CCcccceEEEeCCCEEEEECCccCCC
Confidence 667788775 2 4588999988772 111110 00 0 0000011222223888888874
Q ss_pred ----CCeEEEEeCCCCceEEeeeeccCCC-----CCceEEEEEeCCCCeEEEEccCC-----CeeEeEEEEEeee
Q psy18018 571 ----DGTVKLWDVKTGEFIRNLVSLDSGG-----SGGVVWRIRASETKLVCAVGSRN-----GTEETKLLVLDFD 631 (635)
Q Consensus 571 ----d~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~d~~~l~~~~~d-----g~~~~~l~~~d~~ 631 (635)
...+.+||+.+.+... +. +.... ....-.++...++|++++.|+.. |+.--.+|.+|+.
T Consensus 621 ~~~~~~~v~~yd~~t~~W~~-~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~ 693 (695)
T 2zwa_A 621 LFDRTNSIISLDPLSETLTS-IP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAI 693 (695)
T ss_dssp CCCTTTSEEEEETTTTEEEE-CC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEEC
T ss_pred CCCCCCeEEEEECCCCeEEE-ee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEE
Confidence 3469999999887652 21 10000 00000234445677888888743 3333357777764
No 322
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.11 E-value=0.079 Score=54.78 Aligned_cols=192 Identities=13% Similarity=0.059 Sum_probs=101.8
Q ss_pred CCceEEEEecCcEEEEe-cCCCeEEEEEccC----CceEEeeeCCCcceeEEEEe---CCEEEEEeCCCcEEEEEccCCc
Q psy18018 343 VPDLFGFQFDGVHVVSG-SLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELR---NNILVSGNADSTVKVWDIVSGT 414 (635)
Q Consensus 343 ~~~~~~~s~~~~~l~~~-~~dg~i~v~~~~~----~~~~~~~~~~~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~ 414 (635)
.+..+++++.+..|+.+ ...+.|+.+++.. ......+.........++++ +.++++-...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 34557788866666555 4457899998875 22222222222234556664 3444454566788888876543
Q ss_pred ceeEEE---------EEeeCCcEEEEEeC--CCcEEEEeCCCCceeeee-ccCCccEEEEEec---CCEEEEEeCCCcEE
Q psy18018 415 KKLMFR---------ICLFDGVHVVSGSL--DTSIRVWEAESGNLRHTL-MGHQSLTSGMELR---NNILVSGNADSTVK 479 (635)
Q Consensus 415 ~~~~~~---------~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~~~dg~i~ 479 (635)
...... .+.|.+.+|+.+.. .+.|..+++.... ...+ ...-....+|+++ +.++++-...+.|.
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 322211 23444444444432 2567777665322 2222 1122234456664 34555656678899
Q ss_pred EEECCCCceeEEecCCCcccccEEEEEecC-CEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018 480 VWDIVSGQCLQTLSGRNKHQSAVTCLQFNS-RFVITSSDDGTVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~ 536 (635)
.+++.... ...+............+++++ .++++....+.|..++..+++.+..+.
T Consensus 566 ~~d~dG~~-~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 566 SIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECSSSSC-CEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEccCCCc-eEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 99986433 233321111112233455554 444555567889999988887766654
No 323
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.00 E-value=0.59 Score=48.32 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=98.2
Q ss_pred CcEEEEeCCCCceeeee--------ccCCccEEEEEe--cCCEEEEEeCC------CcEEEEECCCCceeEEecCCCccc
Q psy18018 436 TSIRVWEAESGNLRHTL--------MGHQSLTSGMEL--RNNILVSGNAD------STVKVWDIVSGQCLQTLSGRNKHQ 499 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~ 499 (635)
..+.+||..+++-...- ......-.+... ++.+++.|+.+ ..+.+||+.+.+-... .......
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCCCc
Confidence 35677777765433222 111122334555 66677777754 3578899887543222 1111122
Q ss_pred ccEEEEEe-cCCEEEEEeCCC--cEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC-CeEEEEecC--C--
Q psy18018 500 SAVTCLQF-NSRFVITSSDDG--TVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN-SRFVITSSD--D-- 571 (635)
Q Consensus 500 ~~v~~~~~-~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~--d-- 571 (635)
..-.+..+ ++++++.|+.++ .+.+||..+.+......... .+.. ...-.++.+..+ +++++.|+. +
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~--~p~~----r~~~~a~v~~~~~~~iyv~GG~~~~~~ 564 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE--FFQN----SLVSAGLEFDPVSKQGIILGGGFMDQT 564 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG--GGGS----CCBSCEEEEETTTTEEEEECCBCTTSS
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC--CCCc----ccceeEEEEeCCCCEEEEECCcCCCCC
Confidence 33344554 888888888655 69999998876443321100 0000 001112333444 778888875 2
Q ss_pred ---CeEEEEeCCCCce-----EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe----eEeEEEEEeeecC
Q psy18018 572 ---GTVKLWDVKTGEF-----IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT----EETKLLVLDFDVD 633 (635)
Q Consensus 572 ---~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~----~~~~l~~~d~~~~ 633 (635)
+.+.+||+.+.+. -..+....+.+. ... +++...++++++.|+.++. ..-.++.||++.+
T Consensus 565 ~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 565 TVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred eeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 4689999998872 111211100111 111 2223344788888885432 1234788887654
No 324
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.96 E-value=0.98 Score=41.54 Aligned_cols=259 Identities=11% Similarity=0.053 Sum_probs=123.5
Q ss_pred EEEecCcEEEEecCCCeEEEEEccCCceEEeee----CCCcceeEEEEeCCEEEEEeCCCcEEE-------EEccCCc--
Q psy18018 348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM----GHQSLTSGMELRNNILVSGNADSTVKV-------WDIVSGT-- 414 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~----~~~~~v~~l~~~~~~l~s~~~dg~i~i-------wd~~~~~-- 414 (635)
.+..++..+++| ..|.| +...+.++.-.... .....+.++.++++.++.++..+.|.. |......
T Consensus 42 ~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~ 119 (327)
T 2xbg_A 42 SFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPK 119 (327)
T ss_dssp EESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTT
T ss_pred EECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccC
Confidence 333355556644 46654 33333343222221 124467888888666666666664443 1111100
Q ss_pred -ceeEEEE-EeeCCcEEEEEeCCCcEEEEeCCCCce-eeeeccCCccEEEEEec--CCEEEEEeCCCcEEEEECCCCcee
Q psy18018 415 -KKLMFRI-CLFDGVHVVSGSLDTSIRVWEAESGNL-RHTLMGHQSLTSGMELR--NNILVSGNADSTVKVWDIVSGQCL 489 (635)
Q Consensus 415 -~~~~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 489 (635)
......+ ..+++..+++ +.++.+.. ..+.++- .....+....+.++.+. +.+++.+ .+|.+..-+-..++.-
T Consensus 120 ~~~~~~~i~~~~~~~~~~~-~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMI-TNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAW 196 (327)
T ss_dssp CSSCEEEEEEEETTEEEEE-ETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSC
T ss_pred CCCCeEEEEEECCCCEEEE-eCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCce
Confidence 0111222 3345554444 44554432 1122322 22223344567777764 3455444 5555544321112222
Q ss_pred EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018 490 QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 567 (635)
..+.. .....+..+.+ +++ ++.++.+|.+++.+...++.-..+... . ......+.++++.+++.++++
T Consensus 197 ~~~~~--~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 197 EPHNR--TTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSP----L---RRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp EEEEC--CSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCT----T---SSCCSCEEEEEESSSSCEEEE
T ss_pred eECCC--CCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCC----c---ccCCcceEEEEecCCCEEEEE
Confidence 22221 13456677777 344 445566788777643323322211110 0 001234677888888887776
Q ss_pred ecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEee
Q psy18018 568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDF 630 (635)
Q Consensus 568 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~ 630 (635)
+. ++.+ .+....|+.-..+... ......+.++.|.++++++ +++.+|. ++.++-
T Consensus 267 g~-~g~i-~~S~DgG~tW~~~~~~--~~~~~~~~~v~~~~~~~~~-~~G~~G~----i~~~~~ 320 (327)
T 2xbg_A 267 GG-AGAL-LCSQDGGQTWQQDVDV--KKVPSNFYKILFFSPDQGF-ILGQKGI----LLRYVT 320 (327)
T ss_dssp ES-TTCE-EEESSTTSSCEECGGG--TTSSSCCCEEEEEETTEEE-EECSTTE----EEEECC
T ss_pred eC-CCeE-EEeCCCCcccEEcCcc--CCCCCCeEEEEEECCCceE-EEcCCce----EEEEcC
Confidence 65 6666 3444545433223210 1223567888888767654 5566786 666653
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.93 E-value=1 Score=41.60 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=42.4
Q ss_pred ceecccccCCCeEEEEec-CCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCC-CCeEEEEccCC
Q psy18018 552 PLLCPHLQFNSRFVITSS-DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASE-TKLVCAVGSRN 618 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~l~~~~~d 618 (635)
.-+.++||||++.|..+. ..+.|..|++.....+.....+ ...+..-.++..+ +|.+.+++..+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCC
Confidence 457899999998776654 5689999998642222222221 1245678889998 58877766533
No 326
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.91 E-value=1 Score=41.41 Aligned_cols=60 Identities=5% Similarity=-0.018 Sum_probs=33.4
Q ss_pred EEEecCcEEEEecCCCeEEEEEccCCceEEeeeC---CCcceeEEEEe-CCEEEEEeCCCcEEEEE
Q psy18018 348 GFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMG---HQSLTSGMELR-NNILVSGNADSTVKVWD 409 (635)
Q Consensus 348 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~---~~~~v~~l~~~-~~~l~s~~~dg~i~iwd 409 (635)
.+.+++..++++. +|.+ .+..+.++.-..+.. ....+.++.+. +..++.++.+|.+.-++
T Consensus 256 ~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 256 AYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp EESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred EecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 3445556555544 5655 344455554443332 23456777774 56677777777665544
No 327
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.83 E-value=2.2 Score=44.56 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=30.1
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCcceEEEEe---cCCEEEEEeCCCeEEEEeCCC
Q psy18018 121 DATLRVWHIESGECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDT 171 (635)
Q Consensus 121 dg~i~vwd~~~~~~~~~l~~h~~~v~~l~~---~~~~l~s~~~dg~v~iwd~~~ 171 (635)
...|+..++...+....+. ....+..|+| ++..+++-...+.|+.+++..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g 455 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 455 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccC
Confidence 4557777776655444443 3455678888 344455555668888888875
No 328
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.60 E-value=0.09 Score=54.36 Aligned_cols=137 Identities=9% Similarity=-0.067 Sum_probs=68.2
Q ss_pred EEEEEc---CCEEEEeeCCCcEEEEECCCCcEE------------EEEeeCCCcEEEEeCCCCeEEEE----------e-
Q psy18018 85 TCLQFS---GSRIVSGSDDNTLKVWSATTGKCL------------LVSGSRDATLRVWHIESGECLHV----------L- 138 (635)
Q Consensus 85 ~~~~~s---~~~l~s~~~d~~v~vWd~~~~~~l------------l~~~~~dg~i~vwd~~~~~~~~~----------l- 138 (635)
..|+++ ++++++-...+.|.+.++...... ++.....|.|++-|......+.. +
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 356665 555555566788888887654432 22222233343333221111111 1
Q ss_pred eCCCcceEEEEe--c-CCEEEEEeCCCeEEEEeCCCccceeeccc--cceeEEeeeccCCCEEEEEeCCCcEEEEECCCC
Q psy18018 139 VGHLAAVRCVQY--D-GKLVVSGAYDYMVKIWNPDTEECLHAELQ--ETEVELSHGYALRSRIVSGSDDNTLKVWSATTG 213 (635)
Q Consensus 139 ~~h~~~v~~l~~--~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 213 (635)
...-..-+.|++ + +.+.++-+..+.|..++++.......... .......+....+..+++....+.|..++..++
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence 111223346777 3 44555556678899999875332211111 111111122223444555556678888888788
Q ss_pred eEEEEEeC
Q psy18018 214 KCLRTLIG 221 (635)
Q Consensus 214 ~~~~~~~~ 221 (635)
+.+..+..
T Consensus 616 ~~~~~i~~ 623 (699)
T 1n7d_A 616 SDVNLLAE 623 (699)
T ss_dssp EEEECCCT
T ss_pred CceEEeec
Confidence 77766643
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.33 E-value=1.2 Score=48.96 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=112.2
Q ss_pred EEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCc
Q psy18018 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGV 427 (635)
Q Consensus 349 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 427 (635)
.+|..+.++.-. ...+.+||+.+.+.++.+.-.. .|....|- ++.|+..+ +..|..|++....
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s------------- 136 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGES------------- 136 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCCC-------------
Confidence 556556555544 6789999999888777665543 45555553 44444433 3346666654211
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeccC----CccEEEEEe--cCCEEEEE-------eCCCcEEEEECCCCceeEEecC
Q psy18018 428 HVVSGSLDTSIRVWEAESGNLRHTLMGH----QSLTSGMEL--RNNILVSG-------NADSTVKVWDIVSGQCLQTLSG 494 (635)
Q Consensus 428 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~ 494 (635)
.+...+.-| ...|..... +.++++.. .-.|.+.+|+.+.+ ..+.+.+
T Consensus 137 -------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ieg 196 (1630)
T 1xi4_A 137 -------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG 196 (1630)
T ss_pred -------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhH
Confidence 111111111 112222222 22333222 23478889987643 2333433
Q ss_pred CCcccccEEEEEec-----CCEEEEEeC---CCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEE
Q psy18018 495 RNKHQSAVTCLQFN-----SRFVITSSD---DGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFV 565 (635)
Q Consensus 495 ~~~~~~~v~~~~~~-----~~~l~~~~~---d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 565 (635)
|...-..+..+ ...++.+.. .+.++|-++... .....+......-.+..-.-..-..++..|+.-..+
T Consensus 197 ---ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~i 273 (1630)
T 1xi4_A 197 ---HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (1630)
T ss_pred ---hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEE
Confidence 33222222221 112221111 267888888543 111111110000000000112234567778888888
Q ss_pred EEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 566 ITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 566 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
...+.-|.+.++|+.||.++..-+ -...+|...+..+...=++.....|.
T Consensus 274 y~itk~G~~~~~d~~t~~~i~~~r-----is~~~iF~~~~~~~~~g~~~vnr~G~ 323 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVNRKGQ 323 (1630)
T ss_pred EEEecCceEEEEecccchhhhhcc-----ccCCceEEeccCCCCCceEEEcCCce
Confidence 888999999999999999876552 23444554444433222233335554
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.24 E-value=2.5 Score=46.49 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCeEEEEeCCCccceeeccccceeEEeeeccCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCCCeEEEEe-eCCEEEE
Q psy18018 160 YDYMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQM-AGNIIIS 238 (635)
Q Consensus 160 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~s 238 (635)
...+|.|-|+.++..+.+... ........|.. .+++--...++.++|+.+.+.++.+.-.. +|.-=.| +.+.|+-
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~-~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~l 121 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI--SADSAIMNPAS-KVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVAL 121 (1630)
T ss_pred CCceEEEEECCCCCCcccccc--cchhhccCCCc-ceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEE
Confidence 344788889888664422211 11122223333 44444457899999999988887765433 4544455 4555544
Q ss_pred eeCceeEEEecccc
Q psy18018 239 GSTDRTLKGWSNAE 252 (635)
Q Consensus 239 ~~~dg~i~~w~~~~ 252 (635)
.+ +..|.-|++.+
T Consensus 122 VT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEG 134 (1630)
T ss_pred Ec-CCeEEEeccCC
Confidence 43 56799999864
No 331
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.22 E-value=2.4 Score=41.12 Aligned_cols=161 Identities=10% Similarity=0.059 Sum_probs=82.7
Q ss_pred CCEEEEEeCCCcEEEEECC-------CCce-----------eEEecCCCcccccEEEEEe--cCCEE-EEEeCCCcEEEE
Q psy18018 466 NNILVSGNADSTVKVWDIV-------SGQC-----------LQTLSGRNKHQSAVTCLQF--NSRFV-ITSSDDGTVKLW 524 (635)
Q Consensus 466 ~~~l~s~~~dg~i~iwd~~-------~~~~-----------~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~vw 524 (635)
+.++++-..++.|..+|+. ++.. ...+... ........+++ ++++| ++-+..+.|+.+
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki 337 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence 4466677778889999987 4443 1121110 11233456777 57754 444566788886
Q ss_pred ECC--CCcee--eeeccce-ec----CceeEEeccCceeccccc-------CCCeEEEEecCCCeEEEEeCCCCceEEee
Q psy18018 525 DVK--TGEFS--TPLMSSF-IL----NPFYFLIYSQPLLCPHLQ-------FNSRFVITSSDDGTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 525 d~~--~~~~~--~~~~~~~-~~----~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 588 (635)
+.. ++... ..+.... .. .+........+--.++.. +++.+.++=..+..|+.++ .+|. +.++
T Consensus 338 d~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti 415 (496)
T 3kya_A 338 DYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY 415 (496)
T ss_dssp EEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred ecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence 543 33221 1111110 00 000000011111133343 4667777667788999999 5664 4444
Q ss_pred eeccC---------CC----------CCceEEEEEeCCC-CeEEEEccCCCeeEeEEEEEeeecC
Q psy18018 589 VSLDS---------GG----------SGGVVWRIRASET-KLVCAVGSRNGTEETKLLVLDFDVD 633 (635)
Q Consensus 589 ~~~~~---------~~----------~~~~i~~l~~s~d-~~~l~~~~~dg~~~~~l~~~d~~~~ 633 (635)
..... .+ .-.....|+++++ |.+.++-..+.. |..++++.+
T Consensus 416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r----Irki~~~~~ 476 (496)
T 3kya_A 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT----IRTISMEQE 476 (496)
T ss_dssp EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE----EEEEEECCC
T ss_pred ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE----EEEEECCCC
Confidence 32100 01 1134679999997 776666666665 666666543
No 332
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.68 E-value=2.7 Score=39.00 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=40.1
Q ss_pred ceecccccCCCeEEEEecCCCeEEEEeCCCCce---EEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCC
Q psy18018 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF---IRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNG 619 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg 619 (635)
....++| .+|.++++.-..+.|...+++.... ......+. .....+..+++.|||.++++.. .+|
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 4456667 5788877777778888888765431 11111110 1235789999999998666553 344
No 333
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.13 E-value=3 Score=37.19 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=128.7
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCCcc-------eeE
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTK-------KLM 418 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~ 418 (635)
+..++....+.+.-. ||.++.|-....-.+..-......|..++......+... ||.+..|-...... ...
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~ 103 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARSG 103 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSS
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCC
Confidence 444555444444445 899999976543222111112346778887755544445 99999997553211 111
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcc
Q psy18018 419 FRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 419 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
....+....+.++-. +|.++.|-......+.........|..++......+.-. ||.++.|-......+.. +...
T Consensus 104 v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~---p~~~ 178 (282)
T 3qhy_B 104 VDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV---PAEA 178 (282)
T ss_dssp EEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC---CGGG
T ss_pred eEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC---ceec
Confidence 222333344444555 999999976542222111122345777777555444445 79999997654322211 1113
Q ss_pred cccEEEEEecCCEEEEEeCCCcEEEEECCCC-ceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 499 QSAVTCLQFNSRFVITSSDDGTVKLWDVKTG-EFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 499 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
...|..++......+.- .||.++.|-.... ++-.+.. ....|..++...+..++++ ||.|..|
T Consensus 179 ~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~---~g~v~~w 242 (282)
T 3qhy_B 179 QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK---NGKVIAW 242 (282)
T ss_dssp GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE---TTEEEEE
T ss_pred CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE---CCEEEEe
Confidence 45688888855444444 6999999986643 2211111 1234555555444444443 8899999
Q ss_pred eCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 578 DVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
--....++. ....|.+++-.....+.++.
T Consensus 243 G~n~~gq~~---------v~~~v~~iaaG~~h~~al~~ 271 (282)
T 3qhy_B 243 GSSRTAPSS---------VQSGVSSIEAGPNAAYALKG 271 (282)
T ss_dssp STTCCCCGG---------GSSCEEEEEECSSCEEEEEC
T ss_pred cCCCCcccc---------CCCCcEEEEECcCeEEEEec
Confidence 765433221 12357777766655554443
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.58 E-value=4.6 Score=37.48 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=48.7
Q ss_pred cCceeccccc-------CCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCCee
Q psy18018 550 SQPLLCPHLQ-------FNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNGTE 621 (635)
Q Consensus 550 ~~~v~~~~~s-------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg~~ 621 (635)
......++|. .+++++++.-..+.|...++..++.......+ ......+..|++.|||.++++.. .+|.
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~~v~~~pdG~lyv~td~~~g~- 346 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIRDVRTGPDGYLYVLTDESSGE- 346 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEEEEEECTTSCEEEEECSTTEE-
T ss_pred CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCceeEEEECCCCcEEEEEeCCCCE-
Confidence 3455666665 36888888778888998888876544332211 12245799999999998766533 5564
Q ss_pred EeEEEEEe
Q psy18018 622 ETKLLVLD 629 (635)
Q Consensus 622 ~~~l~~~d 629 (635)
||.+.
T Consensus 347 ---I~ri~ 351 (353)
T 2g8s_A 347 ---LLKVS 351 (353)
T ss_dssp ---EEEEE
T ss_pred ---EEEEe
Confidence 66553
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.95 E-value=6.1 Score=37.13 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=78.4
Q ss_pred CCcEEEEeCCCCceeeeeccC----CccE--EEEEecCCEEEEEeCCCcEEEEECCCCc------------eeEEecCC-
Q psy18018 435 DTSIRVWEAESGNLRHTLMGH----QSLT--SGMELRNNILVSGNADSTVKVWDIVSGQ------------CLQTLSGR- 495 (635)
Q Consensus 435 d~~i~~~d~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~- 495 (635)
++.||.-++.....-+.+... -..+ ..++++|++||..+. ..|.|-.+..+. ..+.+...
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 455666666533322232221 1123 334456778877755 468888877321 01122210
Q ss_pred --CcccccEEEEEec-----CCEEEEEeCCCcEEEEECCCCceee-eeccceecCceeEEeccCceecccccCCCeEEEE
Q psy18018 496 --NKHQSAVTCLQFN-----SRFVITSSDDGTVKLWDVKTGEFST-PLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567 (635)
Q Consensus 496 --~~~~~~v~~~~~~-----~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 567 (635)
.....+|..+.|+ +..|++-..|+.|++||+....... .+... ......-.....|.+++|.+++-.|..
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~--~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKP--NNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCC--CSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcc--ccccCCCcccceEEEEEEcCCCcEEEE
Confidence 0024678899993 7789999999999999998633111 11110 011110112257889999998876665
Q ss_pred --ecCCCeEEEE
Q psy18018 568 --SSDDGTVKLW 577 (635)
Q Consensus 568 --~~~d~~v~iw 577 (635)
.+.+|.|+-.
T Consensus 197 l~~t~~GDIYAl 208 (452)
T 3pbp_A 197 LNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSCEEEEE
T ss_pred EecCCCCCEEEE
Confidence 4578877643
No 336
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.84 E-value=6 Score=36.70 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=43.0
Q ss_pred ceecccc-------cCCCeEEEEecCCCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEcc-CCC
Q psy18018 552 PLLCPHL-------QFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGS-RNG 619 (635)
Q Consensus 552 ~v~~~~~-------s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~-~dg 619 (635)
....++| ..+|+++++.-..+.|...++.....+.....+. ......+..+++.|||.+.++.. .+|
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~~rp~~v~~~pDG~lyv~~~~~~G 334 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-KNVFGRLRDVVIDDDGGILISTSNRDG 334 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-TTTSCCEEEEEECTTSCEEEEECTTSS
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-cCCCCCeeEEEECCCCcEEEEEeCCCC
Confidence 4556666 3578888887778889999987642222111111 12346789999999998766654 344
No 337
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.73 E-value=5.1 Score=35.66 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=98.4
Q ss_pred cceeEEEEeCCEEEEEeCCCcEEEEEccCCcce-------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCCceeeeeccCC
Q psy18018 384 SLTSGMELRNNILVSGNADSTVKVWDIVSGTKK-------LMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ 456 (635)
Q Consensus 384 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 456 (635)
..|..++......+... ||.+..|-....... ......+....+.+.-. ||.++.|-......+..-..-.
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGS
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcccC
Confidence 36777877766555556 999999975432111 11112222233333335 8999999765422211111113
Q ss_pred ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCCCceee-ee
Q psy18018 457 SLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFST-PL 535 (635)
Q Consensus 457 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~ 535 (635)
..|..++......+.-. ||.|+.|-......+.. +......|..++......+.-. ||.++.|-......+. +.
T Consensus 102 ~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~---~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 102 SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV---PAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC---CccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce
Confidence 46778887766666666 99999997654322211 1124456888888555544455 7999999876432211 11
Q ss_pred ccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCC
Q psy18018 536 MSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTG 582 (635)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~ 582 (635)
. ....|..++...+. .++. .||.|..|-....
T Consensus 177 ~------------~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 177 E------------AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp G------------GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred e------------cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence 1 12345555544333 3333 4899999976543
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.55 E-value=5.7 Score=35.77 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEe----CCCcEEEEECCCCceeEEecCCCcccccEEEEEecCCE
Q psy18018 436 TSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGN----ADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRF 511 (635)
Q Consensus 436 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 511 (635)
..|+..++..++... +.. .....++++++.++-.. .+..|+..++... ....+.. +.. ..+.++++.
T Consensus 88 ~~Iy~i~~dg~~~~~-l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~---~~~--~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV-LDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKN---HYL--FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEE-EEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEES---SCC--CCSEEETTE
T ss_pred CeEEEEeCCCCcceE-eec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeC---CCc--eEeeEECCE
Confidence 457777777654322 222 23346777888777655 3345555666533 3444443 211 235667777
Q ss_pred EEEEeC-CCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCC--CeEEEEeCCCCceEEee
Q psy18018 512 VITSSD-DGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDD--GTVKLWDVKTGEFIRNL 588 (635)
Q Consensus 512 l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~ 588 (635)
|+-.+. ...|.+-++..+....... .... ..++|++++|+-...+ ..|..-++..++. ..+
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L 222 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFYD--------------CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVL 222 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEEC--------------SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EEC
T ss_pred EEEEeCCCceEEEEECCCCCEEEEeC--------------CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEE
Confidence 775554 6778888877654322211 1111 1355888877765433 3566667665543 333
Q ss_pred eeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 589 VSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 589 ~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
. ...+ ..|+|++.+|.-+
T Consensus 223 t-------~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 223 T-------EANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp S-------CSCE--EEEEEETTEEEEE
T ss_pred e-------CCCc--ceEEECCCEEEEE
Confidence 1 1122 2256666666544
No 339
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.74 E-value=10 Score=37.01 Aligned_cols=261 Identities=10% Similarity=0.057 Sum_probs=131.9
Q ss_pred EEEEecCCCeEEEEEccCCceEEeeeCCCcce-eEEEEe--CCEEEEEeCCCcEEEEEccCCcceeEEEEEeeCCcEEEE
Q psy18018 355 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLT-SGMELR--NNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVS 431 (635)
Q Consensus 355 ~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~l~~ 431 (635)
.+.+|+..|.|+++-+.+++.+..+.-.+... +.--++ ...++..+ + ...| -.+........--..||++|..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~--~-~~~~-gD~HHp~~S~tdg~yDGrylfi 147 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDS--A-KFLN-GDCHHPHISMTDGKYDGKYLFI 147 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGG--G-GCCC-CCCCCCEEEEETTEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcC--C-CccC-CCcCCCcccccCCeeeeEEEEE
Confidence 36788888999999999888888776654311 000000 00010000 0 0000 0000111111112347788888
Q ss_pred Ee-CCCcEEEEeCCCCceeeeecc-CCccEEEEEec----CCEEEEEeC-------CCcEE---------E---EECCCC
Q psy18018 432 GS-LDTSIRVWEAESGNLRHTLMG-HQSLTSGMELR----NNILVSGNA-------DSTVK---------V---WDIVSG 486 (635)
Q Consensus 432 ~~-~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~----~~~l~s~~~-------dg~i~---------i---wd~~~~ 486 (635)
.. .+.++...+++..+.-+.+.- ....+.++.+. -.+++.+++ ||... + .|..+.
T Consensus 148 Ndkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm 227 (638)
T 3sbq_A 148 NDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM 227 (638)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC
T ss_pred ecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCcc
Confidence 77 456788888888776655543 33455566652 346766654 22210 0 111122
Q ss_pred ceeEEecCCCcccccEEEEEecCCEEEEEeCCC---------------cEEEEECCC-------Cce-------eeeecc
Q psy18018 487 QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG---------------TVKLWDVKT-------GEF-------STPLMS 537 (635)
Q Consensus 487 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~---------------~i~vwd~~~-------~~~-------~~~~~~ 537 (635)
+...++... ..-.-....+++++.++.+.+. .+.+++++. |+. +..+..
T Consensus 228 ~v~~Qv~v~--gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 228 EMAFQVIVD--GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp SEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred EEEEEEEcC--CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 111111100 0000111122355655554321 355666431 111 111111
Q ss_pred ce----ecCceeEEeccCceecccccCCCeEEEEec-CCCeEEEEeCCCC------ce-------EEeeeeccCCCCCce
Q psy18018 538 SF----ILNPFYFLIYSQPLLCPHLQFNSRFVITSS-DDGTVKLWDVKTG------EF-------IRNLVSLDSGGSGGV 599 (635)
Q Consensus 538 ~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~v~iwd~~~~------~~-------~~~~~~~~~~~~~~~ 599 (635)
.. ...-.+++.-....-.+.++|||+++++++ .+.++.|+|+++- +. ..+. .....
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~------e~GlG 379 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP------ELGLG 379 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC------BCCSC
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec------cCCCc
Confidence 11 112334445555666788999999988866 5789999998752 11 2222 23556
Q ss_pred EEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 600 VWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 600 i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
....+|.++|....+..-|.. +..||++
T Consensus 380 PlHt~Fd~~G~aYTtlfidSq----vvkWni~ 407 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQ----VVKWNME 407 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTE----EEEEEHH
T ss_pred ccEEEECCCCceEeeeeecce----EEEEecc
Confidence 789999999977777777776 5555554
No 340
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=87.79 E-value=19 Score=34.12 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=44.5
Q ss_pred cEEEEEecCCEEEEEeCCCcEEEEECCCCc---------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018 458 LTSGMELRNNILVSGNADSTVKVWDIVSGQ---------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 458 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~ 528 (635)
.|..++......+.-..||.++.|-..... ..............|..++......+.-..||.|+.|=...
T Consensus 278 ~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 278 FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence 466677666666667789999999643211 11111111113346777888777777777899999997653
No 341
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=86.65 E-value=20 Score=33.14 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018 599 VVWRIRASETKLVCAVGSRNGTEETKLLVLDFDVD 633 (635)
Q Consensus 599 ~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~~ 633 (635)
....++| .+|.++++.-..+. |+.++++.+
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~----v~~v~~~~~ 298 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQA----LLRLVLEGE 298 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTE----EEEEEEEEE
T ss_pred CCcceEE-ECCEEEEEECCCCE----EEEEEECCC
Confidence 4567777 56776666555554 666666543
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.25 E-value=13 Score=40.02 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=33.1
Q ss_pred ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777889999999999999999999999988753
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.46 E-value=16 Score=30.87 Aligned_cols=151 Identities=6% Similarity=-0.151 Sum_probs=76.1
Q ss_pred cEEEEEec--CCEEEEEeCCCcEEEEECCCCceeEEecCCCccccc--------EEEEEec--CCEEEEEeCCCcEEEEE
Q psy18018 458 LTSGMELR--NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSA--------VTCLQFN--SRFVITSSDDGTVKLWD 525 (635)
Q Consensus 458 ~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------v~~~~~~--~~~l~~~~~d~~i~vwd 525 (635)
.+..++++ +.+.++ .+|.++-.+..+.....-+. .... -.++.|| |.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~----s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG----RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH----HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc----cccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 44466665 444444 67766666654422111110 1111 2456664 555555 669888777
Q ss_pred CCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEee--eeccCCCCCceEEEE
Q psy18018 526 VKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNL--VSLDSGGSGGVVWRI 603 (635)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~i~~l 603 (635)
-.+.....-+.. .......--..+..+.|.|+|.+-++. |+.++-+...++....-+ ........-..-.-+
T Consensus 114 pP~~~~~~Wl~~----a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 114 PPQSDTDNWIAR----ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp CCCSTTCCHHHH----SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred CCcCCCCceecc----ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 644321111110 000000012467889999999988877 777554443322211000 000001223345567
Q ss_pred EeCCCCeEEEEccCCCeeEeEEEEE
Q psy18018 604 RASETKLVCAVGSRNGTEETKLLVL 628 (635)
Q Consensus 604 ~~s~d~~~l~~~~~dg~~~~~l~~~ 628 (635)
.|.++|.+.++. +|. +|.-
T Consensus 188 ~f~~~G~l~~v~--~g~----~Y~~ 206 (236)
T 1tl2_A 188 FFSSVGTLFGVQ--GGK----FYED 206 (236)
T ss_dssp EECTTSCEEEEE--TTE----EEEE
T ss_pred EECCCCcEEEEe--CCe----EEec
Confidence 799999988877 665 6654
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=85.28 E-value=15 Score=35.36 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=56.2
Q ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEE-eccCceecccccCC----CeEEEEecC---
Q psy18018 501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL-IYSQPLLCPHLQFN----SRFVITSSD--- 570 (635)
Q Consensus 501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~----~~~l~~~~~--- 570 (635)
....+++ +|+++++-...+.|++++..+++....... ...... ........++|+|| +.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~----~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV----PEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----TTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecC----CccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457777 577666554334688887655543221110 000000 01345678999995 444444322
Q ss_pred ---------CCeEEEEeCCCC--ce--EEeee-eccCCCCCceEEEEEeCCCCeEEEEccC
Q psy18018 571 ---------DGTVKLWDVKTG--EF--IRNLV-SLDSGGSGGVVWRIRASETKLVCAVGSR 617 (635)
Q Consensus 571 ---------d~~v~iwd~~~~--~~--~~~~~-~~~~~~~~~~i~~l~~s~d~~~l~~~~~ 617 (635)
...|.-+++..+ +. ...+. .+.. ...-....|+|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 234555655432 11 11111 1111 11224689999999987666544
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.09 E-value=0.95 Score=38.04 Aligned_cols=71 Identities=10% Similarity=-0.055 Sum_probs=44.8
Q ss_pred CceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee---eccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEE
Q psy18018 551 QPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV---SLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLV 627 (635)
Q Consensus 551 ~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~ 627 (635)
..++.++|+|+|.+.++ .+|.+.-.+..+++...-+. .+...+-.. -.++.|.|+|.+.++ .||. ||.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~----iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDK----LYK 111 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTE----EEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCE----EEE
Confidence 36779999999997777 67777776665522211110 000001111 478999999999888 5586 777
Q ss_pred Eee
Q psy18018 628 LDF 630 (635)
Q Consensus 628 ~d~ 630 (635)
++.
T Consensus 112 ~~p 114 (236)
T 1tl2_A 112 ASP 114 (236)
T ss_dssp ESC
T ss_pred eCC
Confidence 764
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=83.22 E-value=34 Score=32.95 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=53.3
Q ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee--EEecCCC---cccccEEEEEec-----CCEEEEEeC--------
Q psy18018 458 LTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL--QTLSGRN---KHQSAVTCLQFN-----SRFVITSSD-------- 517 (635)
Q Consensus 458 ~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~---~~~~~v~~~~~~-----~~~l~~~~~-------- 517 (635)
...+|++ +++++++-...+.|++++..+++.. ..+.... ........|+++ +..|+....
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 3456666 4555555443347888886555432 2222110 124556778885 455554442
Q ss_pred -----CCcEEEEECCCCc--ee--eeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018 518 -----DGTVKLWDVKTGE--FS--TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570 (635)
Q Consensus 518 -----d~~i~vwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 570 (635)
...|.-|+...+. .. ..+...... ...+....|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCCCCCeEeECCCCeEEEEECC
Confidence 1245555543321 10 111000000 01234688999999998777553
No 347
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.05 E-value=34 Score=32.11 Aligned_cols=180 Identities=12% Similarity=0.157 Sum_probs=104.2
Q ss_pred EEEEecCcEEEEecCCCeEEEEEccCC-c----------eEEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccCCc
Q psy18018 347 FGFQFDGVHVVSGSLDTSIRVWEAESG-N----------LRHTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGT 414 (635)
Q Consensus 347 ~~~s~~~~~l~~~~~dg~i~v~~~~~~-~----------~~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~ 414 (635)
++++....+.+.-+.+|.|+.|-.... + ....+.. ....|..++......+....+|.|..|-.....
T Consensus 110 v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G 189 (389)
T 3kci_A 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYG 189 (389)
T ss_dssp EEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGG
T ss_pred EEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCC
Confidence 344445556666677888888864321 0 1111211 223677888878888888899999999643210
Q ss_pred --------cee------------EEEE-EeeCCcEEEEEeCCCcEEEEeCCCC-c----------eeeeeccC-CccEEE
Q psy18018 415 --------KKL------------MFRI-CLFDGVHVVSGSLDTSIRVWEAESG-N----------LRHTLMGH-QSLTSG 461 (635)
Q Consensus 415 --------~~~------------~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~-~----------~~~~~~~~-~~~v~~ 461 (635)
... ...+ +.....+.++-..+|.++.|-.... + ....+... ...|..
T Consensus 190 qLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 269 (389)
T 3kci_A 190 RLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEE
Confidence 000 0111 1111256666678899999965421 1 11222221 225777
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCc-----------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018 462 MELRNNILVSGNADSTVKVWDIVSGQ-----------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 462 ~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~ 528 (635)
++......+.-..||.|+.|-..... ....+.. .....|..++......+....||.|+.|=...
T Consensus 270 v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 270 VECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 77767766777899999999754211 1111111 12245777888766777778899999998764
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.72 E-value=33 Score=31.85 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=80.1
Q ss_pred cEEEEECCCC--ceeEEecCCC---cccccEEEEEec---------CCEEEEEe-CCCcEEEEECCCCceeeeeccceec
Q psy18018 477 TVKVWDIVSG--QCLQTLSGRN---KHQSAVTCLQFN---------SRFVITSS-DDGTVKLWDVKTGEFSTPLMSSFIL 541 (635)
Q Consensus 477 ~i~iwd~~~~--~~~~~~~~~~---~~~~~v~~~~~~---------~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~ 541 (635)
+|.+||+.+. +.++.+..+. ...+.+..+.+| +.+...+. ..+-|.|+|+.+++.-+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667788777 7776665421 123456667665 23433333 4677999999998866655332222
Q ss_pred Ccee-------EEeccCceecccccCC----CeEEEEecCCCeEEEEeCCC-----CceEEeeeeccCCCCCceEEEEEe
Q psy18018 542 NPFY-------FLIYSQPLLCPHLQFN----SRFVITSSDDGTVKLWDVKT-----GEFIRNLVSLDSGGSGGVVWRIRA 605 (635)
Q Consensus 542 ~~~~-------~~~~~~~v~~~~~s~~----~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~i~~l~~ 605 (635)
.... .......+..+++||+ ++.|.-..-.+ -++|.+++ ......+..+...+..+.-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 2111 1122457889999998 67666554443 23443322 221111211111121233445667
Q ss_pred C-CCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 606 S-ETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 606 s-~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
. .+|.+..+--+... |..||.+
T Consensus 283 D~~~G~ly~~~~~~~a----I~~w~~~ 305 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQ----VSCWNTQ 305 (381)
T ss_dssp CTTTCEEEEEESSSSE----EEEEETT
T ss_pred eCCCCeEEEEeccCCe----EEEEeCC
Confidence 5 67776666666665 6666654
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=81.66 E-value=33 Score=31.67 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=50.9
Q ss_pred EEEEEe--cCCEEEEEeCCCcEEEEECCCCceeEEecCC----CcccccEEEEEec-----CCEEEEEe-C-------CC
Q psy18018 459 TSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGR----NKHQSAVTCLQFN-----SRFVITSS-D-------DG 519 (635)
Q Consensus 459 v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~-----~~~l~~~~-~-------d~ 519 (635)
..+|.+ +++.++++...|.|++++.. +.....+... .........++++ +..|+... . ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 345665 45525556678999999853 3322112110 1123345678874 34444332 2 23
Q ss_pred cEEEEECCCCc-eeeeeccceecCceeEEeccCceecccccCCCeEEEEecC
Q psy18018 520 TVKLWDVKTGE-FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSD 570 (635)
Q Consensus 520 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 570 (635)
.|..|++..+. .+.....-....+.. ....+.-..++|.|||.+.++.+.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKL-STGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCC-BSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCC-CCCcccCccEEECCCCcEEEEECC
Confidence 46666665331 111100000000000 001122467999999987776544
No 350
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=79.89 E-value=5.5 Score=39.66 Aligned_cols=58 Identities=28% Similarity=0.195 Sum_probs=41.9
Q ss_pred ecccccCCCeEEEEecCC------------CeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 554 LCPHLQFNSRFVITSSDD------------GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 554 ~~~~~s~~~~~l~~~~~d------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
-.|+|+|+|++++.-..+ +.+.+.+..+++..+-+. .+....++.++|+||++.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~----~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV----GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE----CCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe----CCCCccCcCeeECCCCCEEEEE
Confidence 457899999977765432 346666777787655443 3456899999999999988765
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=78.83 E-value=36 Score=30.49 Aligned_cols=207 Identities=8% Similarity=0.020 Sum_probs=114.4
Q ss_pred EEecCcEEEEec--CCCeEEEEEccCCceEEeeeCCCcceeEEEEeCCEEEEEeCC--------------CcEEEEEccC
Q psy18018 349 FQFDGVHVVSGS--LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNAD--------------STVKVWDIVS 412 (635)
Q Consensus 349 ~s~~~~~l~~~~--~dg~i~v~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~~~d--------------g~i~iwd~~~ 412 (635)
+++++.++.... .++.|...+.+... ...+.. ..+..+...++.++-+... ..|+..++..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 567777776654 24666666655333 333322 2345556667766655432 3567777776
Q ss_pred CcceeEE----EEEeeCCcEEEEEe----CCCcEEEEeCCCCceeeeeccCCccEEEEEecCCEEEEEeC-CCcEEEEEC
Q psy18018 413 GTKKLMF----RICLFDGVHVVSGS----LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA-DSTVKVWDI 483 (635)
Q Consensus 413 ~~~~~~~----~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~-dg~i~iwd~ 483 (635)
.+..... ..+++++++|+-.. .+..|...++.. .....+..+.. ..+.+.++.|.-.+. ...|...++
T Consensus 98 ~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l 174 (302)
T 3s25_A 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDT 174 (302)
T ss_dssp CCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEET
T ss_pred CcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEEC
Confidence 6543322 24678888888776 344566667663 33444444433 346777876665544 678888888
Q ss_pred CCCceeEEecCCCcccccEEEEEecCCEEEEEeCC--CcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCC
Q psy18018 484 VSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDD--GTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFN 561 (635)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 561 (635)
..+.....+.+ ... ..+.+++.+|+-...+ ..|..-++..... ..+. ...+ ..|+|+
T Consensus 175 ~g~~~~~l~~~----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-------------~~~~--~~~~~~ 233 (302)
T 3s25_A 175 ASQSEALFYDC----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-------------EANI--EHYNVY 233 (302)
T ss_dssp TTTEEEEEECS----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-------------CSCE--EEEEEE
T ss_pred CCCCEEEEeCC----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-------------CCCc--ceEEEC
Confidence 76654433332 111 1234577777766543 2455555554432 2221 1112 237788
Q ss_pred CeEEEEec--CCCeEEEEeCCCC
Q psy18018 562 SRFVITSS--DDGTVKLWDVKTG 582 (635)
Q Consensus 562 ~~~l~~~~--~d~~v~iwd~~~~ 582 (635)
+++|.-+. ..+.|..-++...
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC
T ss_pred CCEEEEEECCCCcEEEEEECCCC
Confidence 88777553 3456666676543
No 352
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=77.71 E-value=43 Score=30.72 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=55.6
Q ss_pred ccEEEEEe--cCCEEEEEeCCCcEEEEECCCCcee--EEecC-CCcccccEEEEEec-----CCEEEEE-e--CCCcEEE
Q psy18018 457 SLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCL--QTLSG-RNKHQSAVTCLQFN-----SRFVITS-S--DDGTVKL 523 (635)
Q Consensus 457 ~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~~v~~~~~~-----~~~l~~~-~--~d~~i~v 523 (635)
....+|++ ++.++++--..|.|++++..+++.. ..+.. ..........++++ +.+|+.. + .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 34456666 5666666555899999987655432 22211 11134567788884 2334332 2 3455666
Q ss_pred EECCCCce----e---eeeccceecCceeEEeccCceecccccCCCeEEEEec
Q psy18018 524 WDVKTGEF----S---TPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569 (635)
Q Consensus 524 wd~~~~~~----~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 569 (635)
|.+..+.. . ..+...... ...+.-..|+|.|||.+.++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPK------GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECC------CSSCCCCCEEECTTSCEEEECB
T ss_pred EEeCCCCcccccCCCcEEEEEcCCC------CCCccCccccCCCCCCEEEEEC
Confidence 66554211 0 011000000 1123456799999999888755
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.18 E-value=37 Score=36.50 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.8
Q ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy18018 501 AVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLM 536 (635)
Q Consensus 501 ~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 536 (635)
.+.+++. +..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3444555 56799999999999999999999877654
No 354
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=77.05 E-value=50 Score=31.15 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=103.6
Q ss_pred eEEEEecCcEEEEecCC-CeEEEEEccCC---------ceE--EeeeC-CCcceeEEEEeCCEEEEEeCCCcEEEEEccC
Q psy18018 346 LFGFQFDGVHVVSGSLD-TSIRVWEAESG---------NLR--HTLMG-HQSLTSGMELRNNILVSGNADSTVKVWDIVS 412 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~d-g~i~v~~~~~~---------~~~--~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~ 412 (635)
+..++....+.+.-..+ +.|+.|-.... ... ..+.. ....|..++......+....+|.|..|-...
T Consensus 70 i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~ 149 (406)
T 4d9s_A 70 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 149 (406)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCC
Confidence 44455544444444444 48888854321 111 11111 2236788888788888888999999996543
Q ss_pred Ccc--------ee-----------EEEEEeeCCcEEEEEeCCCcEEEEeCCCC-c----------eeeeecc-CCccEEE
Q psy18018 413 GTK--------KL-----------MFRICLFDGVHVVSGSLDTSIRVWEAESG-N----------LRHTLMG-HQSLTSG 461 (635)
Q Consensus 413 ~~~--------~~-----------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~----------~~~~~~~-~~~~v~~ 461 (635)
... .. .....+....+.++-..+|.++.|-.... + ....+.. ....+..
T Consensus 150 ~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~ 229 (406)
T 4d9s_A 150 NGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSM 229 (406)
T ss_dssp TSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEE
T ss_pred CccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEE
Confidence 210 00 12223344556666778999999964321 1 1111111 1245667
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCc-----------eeEEecCCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018 462 MELRNNILVSGNADSTVKVWDIVSGQ-----------CLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 462 ~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~ 528 (635)
++......+.-..+|.|+.|-..... ....+.. .....|..++......+.-..||.|+.|=...
T Consensus 230 va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA--LSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG--GTTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred EEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc--cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence 77766777777889999999753211 1111111 12345777777666777777899999997654
No 355
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=76.76 E-value=52 Score=31.22 Aligned_cols=180 Identities=11% Similarity=0.031 Sum_probs=102.7
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEc--cC-Cce--------EEee-eCCCcceeEEEEeCCEEEEEeCCCcEEEEEccCC
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEA--ES-GNL--------RHTL-MGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG 413 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~--~~-~~~--------~~~~-~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 413 (635)
+..++....+.++-..+|.|+.|-. .. +++ .... ......|..++......+....+|.|..|-....
T Consensus 129 i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~ 208 (423)
T 3mvd_K 129 ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQ 208 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred EEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcC
Confidence 4445555556666677888888874 21 211 1111 1223467888887888888889999999953221
Q ss_pred c-----------------------c--------eeEEEEEeeCCcEEEEEeCCCcEEEEeCCCCc-----------eeee
Q psy18018 414 T-----------------------K--------KLMFRICLFDGVHVVSGSLDTSIRVWEAESGN-----------LRHT 451 (635)
Q Consensus 414 ~-----------------------~--------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----------~~~~ 451 (635)
. + .....+..-....++.-..++.++.|-..... ....
T Consensus 209 GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p 288 (423)
T 3mvd_K 209 GQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTP 288 (423)
T ss_dssp STTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEE
T ss_pred CccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeee
Confidence 0 0 00111111222223333578888888643310 1111
Q ss_pred eccCCccEEEEEecCCEEEEEeCCCcEEEEECCCC------------ceeEEecCCCcccccEEEEEecCCEEEEEeCCC
Q psy18018 452 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG------------QCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDG 519 (635)
Q Consensus 452 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 519 (635)
.......|..++......+.-..||.|+.|-.... .....+.. ....|..++......+.-..||
T Consensus 289 ~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~---l~~~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 289 IKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK---LTEKIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp EEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTT---CCSCEEEEEEETTEEEEEETTS
T ss_pred EEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEecc---CCCCEEEEEcCCCeEEEEcCCC
Confidence 11113467777776777777788999999965321 11122222 2226888888666666668899
Q ss_pred cEEEEECCC
Q psy18018 520 TVKLWDVKT 528 (635)
Q Consensus 520 ~i~vwd~~~ 528 (635)
.|+.|=...
T Consensus 366 ~v~~wG~n~ 374 (423)
T 3mvd_K 366 KLYSWGSGV 374 (423)
T ss_dssp CEEEEECCT
T ss_pred CEEEECCCC
Confidence 999998654
No 356
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=76.70 E-value=47 Score=30.62 Aligned_cols=32 Identities=9% Similarity=-0.054 Sum_probs=21.6
Q ss_pred ceEEEEEeC-------CCCeEEEEccCCCeeEeEEEEEeeecC
Q psy18018 598 GVVWRIRAS-------ETKLVCAVGSRNGTEETKLLVLDFDVD 633 (635)
Q Consensus 598 ~~i~~l~~s-------~d~~~l~~~~~dg~~~~~l~~~d~~~~ 633 (635)
.....++|. .+|.++++.-..+. |+.++++.+
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~----v~~~~~~~~ 297 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSM----LAAVNFGDN 297 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTE----EEEEEECGG
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCE----EEEEEECCC
Confidence 457788883 57777776665554 777777654
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.89 E-value=73 Score=32.47 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=32.8
Q ss_pred ccEEEEEecCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy18018 500 SAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMS 537 (635)
Q Consensus 500 ~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 537 (635)
..|.++.++..++++-+.|.++|+|++++++++.....
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45788888999999999999999999999997766544
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=74.12 E-value=13 Score=37.79 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred EEEEecCCCCCCCceeecCCcchheeeccceeeeeeecCCCCC------Cc-eeec----cCcceEEEEEEcCCEEEEee
Q psy18018 30 TCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKD------PK-VLKG----HDDHVITCLQFSGSRIVSGS 98 (635)
Q Consensus 30 ~~~~~s~~~~~~~~~la~~~~~~~~~~~~~~~~~iwd~~~~~~------~~-~l~~----h~~~vi~~~~~s~~~l~s~~ 98 (635)
..++.+ ++. ++++-.+++.+....+.. --|+.-.... ++ -+.+ -.+.+|.|+.+...+|++.+
T Consensus 165 ~L~avs----~~~-liVsL~DGGLLrL~r~~~-~d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~ 238 (729)
T 3f7f_A 165 FLFYVS----PQF-SVVFLEDGGLLGLKKVDG-VHYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLT 238 (729)
T ss_dssp EEEECS----SSB-EEEEETTSCEECCEESSS-SCEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEE
T ss_pred EEEEEC----CCe-EEEEEcCCCEEEEEeccC-CCcceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEE
Confidence 567777 444 777766666666543322 1133222211 11 1222 12345688888888999999
Q ss_pred CCCcEEEEECCCCcEE
Q psy18018 99 DDNTLKVWSATTGKCL 114 (635)
Q Consensus 99 ~d~~v~vWd~~~~~~l 114 (635)
.|.++|+|++++++.+
T Consensus 239 ~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 239 QNCHLKIWDLTSFTLI 254 (729)
T ss_dssp TTCEEEEEETTTTEEE
T ss_pred cCCeEEEEEcCCCceE
Confidence 9999999999998754
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.10 E-value=1.1e+02 Score=33.89 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=32.5
Q ss_pred ceecccccCCCeEEEEecCCCeEEEEeCCCCceEEeee
Q psy18018 552 PLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLV 589 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 589 (635)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44566677888999999999999999999999988754
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.25 E-value=13 Score=36.68 Aligned_cols=60 Identities=25% Similarity=0.164 Sum_probs=42.0
Q ss_pred ceecccccCCCeEEEEecC------------CCeEEEEeCCCCceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 552 PLLCPHLQFNSRFVITSSD------------DGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 552 ~v~~~~~s~~~~~l~~~~~------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
....|+|+++|.+.+.... .+.|..++..+++....+. ......+..++|+||++.|.++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~----~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV----GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE----CCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe----CCCCccccCCEECCCCCEEEEE
Confidence 3456889999998774321 2267777877888654442 2335679999999999988775
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.20 E-value=34 Score=32.95 Aligned_cols=125 Identities=11% Similarity=0.088 Sum_probs=64.2
Q ss_pred EEEEEe--cCC-EEEEEeCCCcEEEEECCCCceeeeeccceecCceeEE----eccCceecccccCC----CeEEEEecC
Q psy18018 502 VTCLQF--NSR-FVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFL----IYSQPLLCPHLQFN----SRFVITSSD 570 (635)
Q Consensus 502 v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~----~~~l~~~~~ 570 (635)
...|++ ++. .|+++...|.|++++.........+.. ...+... ........|+|+|+ +.+.++-+.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~---~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLD---IHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEE---CTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecC---CcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 456777 554 455667889999997532211111100 0000000 11345678999996 454444321
Q ss_pred --C----------CeEEEEeCCC----------CceEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCee-------
Q psy18018 571 --D----------GTVKLWDVKT----------GEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTE------- 621 (635)
Q Consensus 571 --d----------~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~------- 621 (635)
+ ..|.-|.+.. .+.+..+.. ....|. -..|+|.|||.+.++.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-~~~~H~--g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~ 169 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-LHRKHL--GGQLLFGPDGFLYIILGDGMITLDDMEEM 169 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-SSSSSC--EEEEEECTTSCEEEEECCTTCCHHHHHHC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-CCCccc--CCcEeECCCCcEEEEeCCCCCCCCccccc
Confidence 1 1344455542 123333321 123443 5799999999876666654421
Q ss_pred ------EeEEEEEeeec
Q psy18018 622 ------ETKLLVLDFDV 632 (635)
Q Consensus 622 ------~~~l~~~d~~~ 632 (635)
.-+|+.+|.+.
T Consensus 170 q~~~~~~GkIlRi~~dg 186 (463)
T 2wg3_C 170 DGLSDFTGSVLRLDVDT 186 (463)
T ss_dssp TTCCSCTTEEEEEBCCC
T ss_pred cCcCCCCeeEEEEECCC
Confidence 24677777764
No 362
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=67.63 E-value=5.2 Score=39.02 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=47.2
Q ss_pred EEEecCCEEEEEe-CCCcEEEEECCCCce-----eeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEE
Q psy18018 504 CLQFNSRFVITSS-DDGTVKLWDVKTGEF-----STPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLW 577 (635)
Q Consensus 504 ~~~~~~~~l~~~~-~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iw 577 (635)
.+++||++++.++ .+.++.++|++.... +.......... ..-.......+|.++|.-..+---|..|.-|
T Consensus 329 ~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae----~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 329 NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE----PELGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC----CBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee----ccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence 3566899887776 578899999885221 00000000000 0113345667899999766777799999999
Q ss_pred eCCCC
Q psy18018 578 DVKTG 582 (635)
Q Consensus 578 d~~~~ 582 (635)
++...
T Consensus 405 ni~~a 409 (638)
T 3sbq_A 405 NMEEA 409 (638)
T ss_dssp EHHHH
T ss_pred eccHH
Confidence 99763
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.01 E-value=91 Score=29.11 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=61.6
Q ss_pred ceEEEEecCCEEEEEeCCCeEEEEeCCCcccee-----------ec--cccceeEEeeeccCCCEEEEEeCCCcEEEEEC
Q psy18018 144 AVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLH-----------AE--LQETEVELSHGYALRSRIVSGSDDNTLKVWSA 210 (635)
Q Consensus 144 ~v~~l~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 210 (635)
.|..++......+.-..||.|..|-....-.+. .. .....+............++-..+|.|+.|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 455666655666666789999999654321111 00 01111111222233456667788999999965
Q ss_pred CC-C---------e-EEEEEeC-CCCCeEEEEeeCCEEEEeeCceeEEEeccc
Q psy18018 211 TT-G---------K-CLRTLIG-HTGGVWSSQMAGNIIISGSTDRTLKGWSNA 251 (635)
Q Consensus 211 ~~-~---------~-~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 251 (635)
.. + . ....+.. ....|..++......+....||.|..|-..
T Consensus 134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCC
Confidence 32 1 0 1111111 223677777777788888889999999643
No 364
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=62.97 E-value=1e+02 Score=29.03 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=103.9
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEc--cC-Cce-----------EEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEcc
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEA--ES-GNL-----------RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIV 411 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~--~~-~~~-----------~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~~ 411 (635)
+..++....+.++-+.+|.|+.|-. .. +++ ...+ .....|..++......+....+|.|..|=..
T Consensus 113 i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n 191 (413)
T 1a12_A 113 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCG 191 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCC
Confidence 4445555556666677788888864 11 110 1111 2234677888877788888899999999643
Q ss_pred CCcc---------------------e--------------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCC-c--------
Q psy18018 412 SGTK---------------------K--------------LMFRICLFDGVHVVSGSLDTSIRVWEAESG-N-------- 447 (635)
Q Consensus 412 ~~~~---------------------~--------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~-------- 447 (635)
.... . ...........+.++-..+|.++.|-.... +
T Consensus 192 ~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~ 271 (413)
T 1a12_A 192 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES 271 (413)
T ss_dssp TTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC
T ss_pred CCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCc
Confidence 2100 0 011122223344555568899999976431 1
Q ss_pred --eeeeeccC---CccEEEEEecCCEEEEEeCCCcEEEEECCCC----------c--eeEEecCCCcccccEEEEEecCC
Q psy18018 448 --LRHTLMGH---QSLTSGMELRNNILVSGNADSTVKVWDIVSG----------Q--CLQTLSGRNKHQSAVTCLQFNSR 510 (635)
Q Consensus 448 --~~~~~~~~---~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~--~~~~~~~~~~~~~~v~~~~~~~~ 510 (635)
....+..- ...|..++......+.-..||.|+.|-.... . ....+. ....|..++....
T Consensus 272 ~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~----~l~~v~~v~~G~~ 347 (413)
T 1a12_A 272 CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS----RLPAVSSVACGAS 347 (413)
T ss_dssp EEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC----SSSSEEEEEECSS
T ss_pred ccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec----ccCceeEEEECcc
Confidence 11112211 1347777776666677778999999965321 0 111122 1226888888777
Q ss_pred EEEEEeCCCcEEEEECCC
Q psy18018 511 FVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 511 ~l~~~~~d~~i~vwd~~~ 528 (635)
..+.-..||.|+.|=...
T Consensus 348 hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 348 VGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp EEEEEETTSCEEEEECCT
T ss_pred eEEEEeCCCCEEEecCCC
Confidence 777777899999997653
No 365
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.98 E-value=1.3e+02 Score=28.49 Aligned_cols=140 Identities=7% Similarity=-0.090 Sum_probs=79.1
Q ss_pred eEEEEecCcEEEEecCCCeEEEEEccCC-----------------------ceEEeeeCCCcceeEEEEeCCEEEEE-eC
Q psy18018 346 LFGFQFDGVHVVSGSLDTSIRVWEAESG-----------------------NLRHTLMGHQSLTSGMELRNNILVSG-NA 401 (635)
Q Consensus 346 ~~~~s~~~~~l~~~~~dg~i~v~~~~~~-----------------------~~~~~~~~~~~~v~~l~~~~~~l~s~-~~ 401 (635)
+..++....+.++-..+|.|+.|-.... .+..........|..++......+.. ..
T Consensus 181 i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~ 260 (423)
T 3mvd_K 181 CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQ 260 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETT
T ss_pred EEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECC
Confidence 4445555566666677888888864321 11111112233566666665544444 68
Q ss_pred CCcEEEEEccCCc---------ce---------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCC------------ceeee
Q psy18018 402 DSTVKVWDIVSGT---------KK---------LMFRICLFDGVHVVSGSLDTSIRVWEAESG------------NLRHT 451 (635)
Q Consensus 402 dg~i~iwd~~~~~---------~~---------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~ 451 (635)
++.+..|-..... .. ......+....+.++-..+|.++.|-.... .....
T Consensus 261 ~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~ 340 (423)
T 3mvd_K 261 TQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTI 340 (423)
T ss_dssp TCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEE
T ss_pred CCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceE
Confidence 8999998643311 00 011123344556666678999999965321 11222
Q ss_pred eccCCccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018 452 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS 485 (635)
Q Consensus 452 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 485 (635)
+..-...|..++......+.-..||.|+.|-...
T Consensus 341 v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 341 VKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred eccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 2323336777877767666668999999997543
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=55.92 E-value=1.3e+02 Score=27.95 Aligned_cols=171 Identities=8% Similarity=0.018 Sum_probs=85.5
Q ss_pred cEEEEeCCCC--ceeeeeccC------CccEEEEEec---------CCEEEEE-eCCCcEEEEECCCCceeEEecCCCcc
Q psy18018 437 SIRVWEAESG--NLRHTLMGH------QSLTSGMELR---------NNILVSG-NADSTVKVWDIVSGQCLQTLSGRNKH 498 (635)
Q Consensus 437 ~i~~~d~~~~--~~~~~~~~~------~~~v~~~~~~---------~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 498 (635)
+|.+||+.++ ++++++.-. .+....+.++ +.++..+ ...+.|.++|+.+++..+.+...-..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777777 666655421 2345666665 2233333 34677999999988876655321000
Q ss_pred ---------------cccEEEEEe--c----CCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccC---cee
Q psy18018 499 ---------------QSAVTCLQF--N----SRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQ---PLL 554 (635)
Q Consensus 499 ---------------~~~v~~~~~--~----~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 554 (635)
...+..++. + ++.|.-....+ -++|.+.+.-+. .......+......+ .-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~----~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELK----QKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHS----STTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhh----CcchhhceEEeeecCCCCCcc
Confidence 012333333 1 23333332222 223333221110 000112222222232 223
Q ss_pred ccccc-CCCeEEEEecCCCeEEEEeCCCC----ceEEeeeeccCCCCCceEEEEEeCCCCeEEEEc
Q psy18018 555 CPHLQ-FNSRFVITSSDDGTVKLWDVKTG----EFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615 (635)
Q Consensus 555 ~~~~s-~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~ 615 (635)
.+++. .+|.++++--..+.|..|+..+. +....+.. ...-.....+.+.++|.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~---d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT---SSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE---CTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE---CCCccccCeEEECCCCeEEEEE
Confidence 45564 67888888888899999998751 22333321 1223356778887888755544
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.23 E-value=1.2e+02 Score=27.28 Aligned_cols=186 Identities=11% Similarity=0.128 Sum_probs=93.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcee---------eeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCC--------
Q psy18018 425 DGVHVVSGSLDTSIRVWEAESGNLR---------HTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSG-------- 486 (635)
Q Consensus 425 ~~~~l~~~~~d~~i~~~d~~~~~~~---------~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~-------- 486 (635)
+..+++..+.+|.|+-..+..-+.. ..+......+..+.. ..+.++..+..|.++-+....-
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 4456666777777776654332111 112222222322222 3457777788888776654321
Q ss_pred -ceeEEecCCCcccccEEEE-Ee----cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccC
Q psy18018 487 -QCLQTLSGRNKHQSAVTCL-QF----NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQF 560 (635)
Q Consensus 487 -~~~~~~~~~~~~~~~v~~~-~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (635)
.++...-... ....|.++ .. ++.+++..+..|.++...+....... ..... .. .+.-...+..+....
T Consensus 87 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r--~~G~~--~i-~L~~~d~lv~~~~~~ 160 (312)
T 1suu_A 87 GQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK--SRGVI--VI-KLNDKDFVTSAEIVF 160 (312)
T ss_dssp -CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC------CEE--CB-CCCTTCCEEEEEEEC
T ss_pred CcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC--CCcEE--EE-ecCCCCEEEEEEEeC
Confidence 1110111111 22334333 32 36778899999999998876432211 00000 00 011133444444444
Q ss_pred CCeEEEEecCCCeEEEEeCCCCce-------EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCe
Q psy18018 561 NSRFVITSSDDGTVKLWDVKTGEF-------IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620 (635)
Q Consensus 561 ~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~ 620 (635)
+...++..+.+|.+..++...-.. +..+. -.....|.++..-+++..|++.++.|.
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~----L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMK----LKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCC----CCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEE----eCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 455677788899998888754111 11111 122455666666555666777788886
No 368
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=54.34 E-value=1.3e+02 Score=27.33 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-------eeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECC--CCcee-----
Q psy18018 425 DGVHVVSGSLDTSIRVWEAESGN-------LRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIV--SGQCL----- 489 (635)
Q Consensus 425 ~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~--~~~~~----- 489 (635)
+..+++..+.+|.++-..+..-. ....+.....-+..+.. ..+.++..+..|.+..+... .-...
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 57899999999999988765422 12223333333333333 34578888899998888776 32111
Q ss_pred --EEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018 490 --QTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG 529 (635)
Q Consensus 490 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~ 529 (635)
.-+.. .....|.++.. .+.+++..+..|.++.-.+..-
T Consensus 188 Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 188 GVQGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CEESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CeeeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 11111 12344555554 4568999999999998876543
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.87 E-value=2.3e+02 Score=29.10 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCCCce----EEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeee
Q psy18018 570 DDGTVKLWDVKTGEF----IRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFD 631 (635)
Q Consensus 570 ~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~ 631 (635)
..+.|.+.|+.++.. ......+........+..+.+..+ .++++...++. .+|+.+|++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~--~~l~~~~~~ 380 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV--AKVVTFTLE 380 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE--EEEEEECEE
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE--EEEEEEECC
Confidence 367788899876421 011111111344667889999886 56777778887 456666654
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.46 E-value=1.5e+02 Score=26.81 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=64.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeE-----EecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECC--CCceeeeecc
Q psy18018 466 NNILVSGNADSTVKVWDIVSGQCLQ-----TLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVK--TGEFSTPLMS 537 (635)
Q Consensus 466 ~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~--~~~~~~~~~~ 537 (635)
...++..+.+|.++--.+.+..... .+.. .....-+..... ....++..+..|.+..+... .-.....-..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-ke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-RDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-CTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-CCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 5699999999999998876532211 1111 112223333233 45678888889999888877 2221111000
Q ss_pred ceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCC
Q psy18018 538 SFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581 (635)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~ 581 (635)
.. +...+.....|.++...+++.+++.++..|.++.-.+..
T Consensus 188 Gv---~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 188 GV---QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp CE---ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred Ce---eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 00 001112244566665555667888899999999888754
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=49.03 E-value=1.4e+02 Score=26.23 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=74.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCc----eeEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCCceeeeeccce
Q psy18018 466 NNILVSGNADSTVKVWDIVSGQ----CLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF 539 (635)
Q Consensus 466 ~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 539 (635)
...++..+.+|.++-..+.+.. -...+.. . ....+..+.. ....++..+..|.+..++...-.....-....
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l-k-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL-T-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC-C-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec-C-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 4577888888888887765432 0111111 0 1223333333 34578888888888887764322111000000
Q ss_pred ecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce-------EEeeeeccCCCCCceEEEEEeCCCCeEE
Q psy18018 540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF-------IRNLVSLDSGGSGGVVWRIRASETKLVC 612 (635)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~~~~~~~i~~l~~s~d~~~l 612 (635)
. ...+.....|..+...+++.+++..+..|.++...++.-.. +..+ ...+.+..+....+...+
T Consensus 158 ~---~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i 228 (276)
T 3no0_A 158 Q---GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVEL 228 (276)
T ss_dssp E---CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEE
T ss_pred E---EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEE
Confidence 0 00011234555555555667888889999999888754322 2222 122344454443444566
Q ss_pred EEccCCCe
Q psy18018 613 AVGSRNGT 620 (635)
Q Consensus 613 ~~~~~dg~ 620 (635)
+..+.+|.
T Consensus 229 ~~~t~~G~ 236 (276)
T 3no0_A 229 LITTKNGK 236 (276)
T ss_dssp EEEETTSC
T ss_pred EEEcCCCe
Confidence 66677775
No 372
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=45.59 E-value=2.1e+02 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.6
Q ss_pred CCCceEEEEecCc-EEEEecCCCeEEEEEcc
Q psy18018 342 HVPDLFGFQFDGV-HVVSGSLDTSIRVWEAE 371 (635)
Q Consensus 342 ~~~~~~~~s~~~~-~l~~~~~dg~i~v~~~~ 371 (635)
..+..+++.|++. +++++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4556678889986 56667788999999754
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.38 E-value=2.3e+02 Score=31.20 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.1
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeEEecC
Q psy18018 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSG 494 (635)
Q Consensus 465 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 494 (635)
+..++++-+.|+++|+|++.+++++.+...
T Consensus 248 ~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 248 TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred CccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456999999999999999999999887553
No 374
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=43.76 E-value=2.3e+02 Score=27.27 Aligned_cols=185 Identities=8% Similarity=0.072 Sum_probs=108.2
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEcc---CCce------------EEeeeC-CCcceeEEEEeCCEEEEEeCCCcEEE
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAE---SGNL------------RHTLMG-HQSLTSGMELRNNILVSGNADSTVKV 407 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~---~~~~------------~~~~~~-~~~~v~~l~~~~~~l~s~~~dg~i~i 407 (635)
..+..++......++-+.+|.|+.|-.. .+++ ...+.. ....|..++......+....+|.|..
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~ 227 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEE
Confidence 4566666666666777788889888751 1110 011111 12358888888888888889999999
Q ss_pred EEccCCcc--------------e------eEEEEEeeCCcEEEEEeCCCcEEEEeCCCC-c-----------e---eeee
Q psy18018 408 WDIVSGTK--------------K------LMFRICLFDGVHVVSGSLDTSIRVWEAESG-N-----------L---RHTL 452 (635)
Q Consensus 408 wd~~~~~~--------------~------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~-----------~---~~~~ 452 (635)
|-...... . ...........+.++-..+|.++.|-.... + . ...+
T Consensus 228 wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v 307 (473)
T 3of7_A 228 WGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL 307 (473)
T ss_dssp EECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEEC
T ss_pred EeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccc
Confidence 96432110 0 112234445566666778999999965321 1 1 1111
Q ss_pred cc-CCccEEEEEecCCEEEEEeCCCcEEEEECCCCcee--------------------E-EecCCCcccccEEEEEecCC
Q psy18018 453 MG-HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCL--------------------Q-TLSGRNKHQSAVTCLQFNSR 510 (635)
Q Consensus 453 ~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------~-~~~~~~~~~~~v~~~~~~~~ 510 (635)
.. ....|..++......+.-..||.|+.|-......+ . ..+........|..++....
T Consensus 308 ~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~ 387 (473)
T 3of7_A 308 ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSH 387 (473)
T ss_dssp CCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSS
T ss_pred cccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCC
Confidence 11 12357777776666666688999999964321100 0 00000001126777887767
Q ss_pred EEEEEeCCCcEEEEECCC
Q psy18018 511 FVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 511 ~l~~~~~d~~i~vwd~~~ 528 (635)
..+.-..||.|+.|=...
T Consensus 388 hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 388 HSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEEEETTSCEEEEECCT
T ss_pred eEEEEeCCCcEEEeeCCC
Confidence 667778899999997654
No 375
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=40.53 E-value=2.4e+02 Score=26.49 Aligned_cols=183 Identities=10% Similarity=0.054 Sum_probs=106.5
Q ss_pred ceEEEEecCcEEEEecCCCeEEEEEccCC-c------------eEEeeeCCCcceeEEEEeCCEEEEEeCCCcEEEEEc-
Q psy18018 345 DLFGFQFDGVHVVSGSLDTSIRVWEAESG-N------------LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDI- 410 (635)
Q Consensus 345 ~~~~~s~~~~~l~~~~~dg~i~v~~~~~~-~------------~~~~~~~~~~~v~~l~~~~~~l~s~~~dg~i~iwd~- 410 (635)
.+..++....+.+.-..+|.|+.|-.... + ....+ .-...|..++......+....+|.|..|-.
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~~hs~alt~~G~v~~wG~~ 138 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGDSHTAALTDDGRVFLWGSF 138 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCCCeEEEEcCCCcEEEeeCC
Confidence 45556666666666778888988865421 1 00111 112367788887788888889999999975
Q ss_pred -cCC---------ccee-E--------EEEEeeCCcEEEEEeCCCcEEEEeCCCC-ce---------------------e
Q psy18018 411 -VSG---------TKKL-M--------FRICLFDGVHVVSGSLDTSIRVWEAESG-NL---------------------R 449 (635)
Q Consensus 411 -~~~---------~~~~-~--------~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~---------------------~ 449 (635)
+.. .... . ....+....+.++-..+|.++.|-.... ++ .
T Consensus 139 ~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P 218 (413)
T 1a12_A 139 RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVP 218 (413)
T ss_dssp EETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSC
T ss_pred cCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccC
Confidence 211 0000 1 1112334455666678899999965431 11 0
Q ss_pred eeecc------CCccEEEEEecCCEEEEEeCCCcEEEEECCCCc-----------eeEEecCCCcccccEEEEEecCCEE
Q psy18018 450 HTLMG------HQSLTSGMELRNNILVSGNADSTVKVWDIVSGQ-----------CLQTLSGRNKHQSAVTCLQFNSRFV 512 (635)
Q Consensus 450 ~~~~~------~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l 512 (635)
..+.. ....|..++......+.-..||.|+.|-..... ....+.........|..++......
T Consensus 219 ~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs 298 (413)
T 1a12_A 219 KCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298 (413)
T ss_dssp EECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEE
T ss_pred ceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceE
Confidence 00111 224577777766766777789999999764311 1111211111113477788766676
Q ss_pred EEEeCCCcEEEEECCC
Q psy18018 513 ITSSDDGTVKLWDVKT 528 (635)
Q Consensus 513 ~~~~~d~~i~vwd~~~ 528 (635)
+.-..||.|+.|-...
T Consensus 299 ~al~~~G~v~~wG~n~ 314 (413)
T 1a12_A 299 VCMDSEGKAYSLGRAE 314 (413)
T ss_dssp EEEETTSCEEEEECCG
T ss_pred EEEeCCCCEEEeeCCC
Confidence 7777899999997653
No 376
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=38.57 E-value=2.7e+02 Score=26.70 Aligned_cols=185 Identities=10% Similarity=0.102 Sum_probs=108.4
Q ss_pred CceEEEEecCcEEEEecCCCeEEEEEccCCce----------------------------------EEeeeC-------C
Q psy18018 344 PDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL----------------------------------RHTLMG-------H 382 (635)
Q Consensus 344 ~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~----------------------------------~~~~~~-------~ 382 (635)
..+..++..+...++-..+|.|+.|-....-. ...+.. .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 35666777677777777888898886432100 001111 1
Q ss_pred CcceeEEEEeCCEEEEEeCCCcEEEEEccC---C-------c-ceeE------------EEEEeeCCcEEEEEeCCCcEE
Q psy18018 383 QSLTSGMELRNNILVSGNADSTVKVWDIVS---G-------T-KKLM------------FRICLFDGVHVVSGSLDTSIR 439 (635)
Q Consensus 383 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~---~-------~-~~~~------------~~~~~~~~~~l~~~~~d~~i~ 439 (635)
...|..++......+....+|.|..|-... + . .... ....+....+.++-..+|.++
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 356788888788888888999999997521 0 0 0000 122334455666667899999
Q ss_pred EEeCCCC-cee------------eeeccCCccEEEEEecCCEEEEEeCCCcEEEEECCCC------------cee-EEec
Q psy18018 440 VWEAESG-NLR------------HTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG------------QCL-QTLS 493 (635)
Q Consensus 440 ~~d~~~~-~~~------------~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~-~~~~ 493 (635)
.|-.... ++- .........|..++......+.-..+|.|+.|-.... ... ....
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~ 306 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKR 306 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEE
T ss_pred EEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccc
Confidence 9965431 110 0000011457777777777777788999999964321 011 1111
Q ss_pred CCCcccccEEEEEecCCEEEEEeCCCcEEEEECCC
Q psy18018 494 GRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKT 528 (635)
Q Consensus 494 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~ 528 (635)
........|..++......+.-..||.|+.|-...
T Consensus 307 v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 307 LALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp CCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCC
Confidence 11112346778888766666778899999997643
No 377
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.81 E-value=3.7e+02 Score=27.65 Aligned_cols=222 Identities=10% Similarity=0.095 Sum_probs=106.1
Q ss_pred EEEecCcEEEEe-----cCCCeEEEEEccCCceEEe-ee-CCCc------ceeEEEEe-CCEEEEEe-----------CC
Q psy18018 348 GFQFDGVHVVSG-----SLDTSIRVWEAESGNLRHT-LM-GHQS------LTSGMELR-NNILVSGN-----------AD 402 (635)
Q Consensus 348 ~~s~~~~~l~~~-----~~dg~i~v~~~~~~~~~~~-~~-~~~~------~v~~l~~~-~~~l~s~~-----------~d 402 (635)
+++|++++++.+ +.-..++++|+.+++.+.. +. .-.. ....++|- .+.++.+. ..
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 377888887653 2234799999999877631 22 0000 01233553 44444432 12
Q ss_pred CcEEEEEccCCccee------------EEEEEeeCCc-----EEEEEe---CCCcEEEEeCCC--CceeeeeccCCccEE
Q psy18018 403 STVKVWDIVSGTKKL------------MFRICLFDGV-----HVVSGS---LDTSIRVWEAES--GNLRHTLMGHQSLTS 460 (635)
Q Consensus 403 g~i~iwd~~~~~~~~------------~~~~~~~~~~-----~l~~~~---~d~~i~~~d~~~--~~~~~~~~~~~~~v~ 460 (635)
..++.|.+-+....- .....+.+++ .+++.+ ....+.+.+... ++.. .+........
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 294 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDATL 294 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTCEE
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcceE
Confidence 457888776542211 1112334444 233332 123455555543 3322 2222221111
Q ss_pred EEEe-cCCEEEEE----------eCCCcEEEEECCCCc-------eeEEecCCCcccccEEEEEec-CCEEEEEeCCCc-
Q psy18018 461 GMEL-RNNILVSG----------NADSTVKVWDIVSGQ-------CLQTLSGRNKHQSAVTCLQFN-SRFVITSSDDGT- 520 (635)
Q Consensus 461 ~~~~-~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~- 520 (635)
+.. .+.+++.. ...+.|...++.++. ....+-.+ .....+..+.+. +.++++...++.
T Consensus 295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~ 372 (711)
T 4hvt_A 295 -QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP-TANEVFNFISTTKDRVFLATYDNVVA 372 (711)
T ss_dssp -EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC-CTTEEEEEEEECSSCEEEEEEETTEE
T ss_pred -eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC-CCCCeEEEEEEECCEEEEEEEECCEE
Confidence 222 33343322 246778888887642 22222211 134567778884 566677777765
Q ss_pred -EEEEECCCCce-eee-eccceecCceeEEeccCceecccccCCCe-EEEEecC---CCeEEEEeCCCCc
Q psy18018 521 -VKLWDVKTGEF-STP-LMSSFILNPFYFLIYSQPLLCPHLQFNSR-FVITSSD---DGTVKLWDVKTGE 583 (635)
Q Consensus 521 -i~vwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~---d~~v~iwd~~~~~ 583 (635)
+.++++.+++. ... +... ....+.....++++. ++++.+. -+.+..+|+. ++
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp----------~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLP----------YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp EEEEECEETTEECCCEEECCC----------STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEEEEECCCCceEEEeccCCC----------CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 56676655531 111 1110 112344444556654 4444332 2578888876 44
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.56 E-value=2.3e+02 Score=25.31 Aligned_cols=176 Identities=9% Similarity=0.079 Sum_probs=100.4
Q ss_pred ecCcEEEEecCCCeEEEEEccCCceE---------EeeeCCCcceeEEEEe-CCEEEEEeCCCcEEEEEccCC-------
Q psy18018 351 FDGVHVVSGSLDTSIRVWEAESGNLR---------HTLMGHQSLTSGMELR-NNILVSGNADSTVKVWDIVSG------- 413 (635)
Q Consensus 351 ~~~~~l~~~~~dg~i~v~~~~~~~~~---------~~~~~~~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~------- 413 (635)
++...+++.+.+|.|+-..+..-+.. ..++.....+..+..+ .+.++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45667888999999998776533211 1123333333333333 567888888888777654311
Q ss_pred --------------cceeEEEEEe--eCCcEEEEEeCCCcEEEEeCCC-------CceeeeeccCCccEEEEEe-c-CCE
Q psy18018 414 --------------TKKLMFRICL--FDGVHVVSGSLDTSIRVWEAES-------GNLRHTLMGHQSLTSGMEL-R-NNI 468 (635)
Q Consensus 414 --------------~~~~~~~~~~--~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~-~-~~~ 468 (635)
+......... .++.+++..+.+|.++...+.. |.....+.. ...+..+.. + ++.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEK 164 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCE
Confidence 1111111111 1467788899999998887643 222223333 233443333 3 457
Q ss_pred EEEEeCCCcEEEEECCCCce-------eEEecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018 469 LVSGNADSTVKVWDIVSGQC-------LQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG 529 (635)
Q Consensus 469 l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~ 529 (635)
++..+.+|....+...+-.. +..+... ....|..+.. ++..+++.+..|..+..++..-
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 88889999998888754211 1112111 2344555544 4667888899999998887643
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=35.63 E-value=2.5e+02 Score=25.32 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred eCCcEEEEEeCCCcEEEEeCCC----CceeeeeccCCccEEEEEecCC-EEEEEeCCCcEEEEEC---------CCCcee
Q psy18018 424 FDGVHVVSGSLDTSIRVWEAES----GNLRHTLMGHQSLTSGMELRNN-ILVSGNADSTVKVWDI---------VSGQCL 489 (635)
Q Consensus 424 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~---------~~~~~~ 489 (635)
++...+++.+.+|.|+--.+.+ +..-..++.....+..+..+.+ .++..+..|.++-+.. ..|.++
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Q ss_pred EEecCCCcccccEEEEEec----CCEEEEEeCCCcEEEEEC--------CCCceeeeeccceecCceeEEeccCceeccc
Q psy18018 490 QTLSGRNKHQSAVTCLQFN----SRFVITSSDDGTVKLWDV--------KTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557 (635)
Q Consensus 490 ~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~vwd~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 557 (635)
..+-........+..+..+ +.+++.++.+|.++-..+ ..+.....+.. ...+..+.
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e------------~d~lv~~~ 150 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN------------DDQVVDVH 150 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT------------TCCEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC------------CCEEEEEE
Q ss_pred ccCCCeEEEEecCCCeEEEEeCCC---------CceEEeeeeccCCCCCceEEEEEeCCCCe-EEEEccCCCeeEeEEEE
Q psy18018 558 LQFNSRFVITSSDDGTVKLWDVKT---------GEFIRNLVSLDSGGSGGVVWRIRASETKL-VCAVGSRNGTEETKLLV 627 (635)
Q Consensus 558 ~s~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l~~~~~dg~~~~~l~~ 627 (635)
.......++..+.+|.+..++... |.....+ .....|.++..-+++. .|++.+..|. .-.
T Consensus 151 ~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L------~~~d~Vv~~~~~~~~~~~ll~vt~~G~----gKr 220 (323)
T 1wp5_A 151 LTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL------KEGDYIVSGQLITSKDESIVVATQRGA----VKK 220 (323)
T ss_dssp EECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC------CTTCCEEEEEEECCTTCEEEEEETTSE----EEE
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe------CCCCEEEEEEEEcCCCcEEEEEECCCc----eEE
Q ss_pred Eeee
Q psy18018 628 LDFD 631 (635)
Q Consensus 628 ~d~~ 631 (635)
.+++
T Consensus 221 ~~~~ 224 (323)
T 1wp5_A 221 MKLT 224 (323)
T ss_dssp EEGG
T ss_pred EEHH
No 380
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=34.55 E-value=2.7e+02 Score=25.42 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=44.2
Q ss_pred CCCceEEEEecCcEEEEecCCCeEEEEEccCCceEE--ee----eCCCcceeEEEEeC-----CEEEEE---eCCCcEEE
Q psy18018 342 HVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRH--TL----MGHQSLTSGMELRN-----NILVSG---NADSTVKV 407 (635)
Q Consensus 342 ~~~~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~--~~----~~~~~~v~~l~~~~-----~~l~s~---~~dg~i~i 407 (635)
..+..+++.|+|..+++--..|.|++++...++... .+ .........+++++ ..|... ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 455678899999877776658999999866555321 11 12345678899964 344443 23445655
Q ss_pred EEccC
Q psy18018 408 WDIVS 412 (635)
Q Consensus 408 wd~~~ 412 (635)
|.+..
T Consensus 112 ~~~~~ 116 (347)
T 3das_A 112 MLYDE 116 (347)
T ss_dssp EEBCT
T ss_pred EEeCC
Confidence 65554
No 381
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=32.35 E-value=3.8e+02 Score=26.46 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=38.7
Q ss_pred CeEEEEeCCCCceEEeeeeccCCCCCceEEEEE---eCCCC--eEEEEccCCCeeEeEEEEEeeecC
Q psy18018 572 GTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIR---ASETK--LVCAVGSRNGTEETKLLVLDFDVD 633 (635)
Q Consensus 572 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~---~s~d~--~~l~~~~~dg~~~~~l~~~d~~~~ 633 (635)
..|.|.|+.+|++++.+..-......+.+..++ ...|| .++.+|...|. ||.+|+...
T Consensus 223 ~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~Gn----lWRfDl~~~ 285 (570)
T 3hx6_A 223 AALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGN----LWRFDLIAG 285 (570)
T ss_dssp EEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSE----EEEEECSCS
T ss_pred cEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCc----EEEEEcCCC
Confidence 479999999999999885321111112233332 33444 47899999997 999999764
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=29.54 E-value=2.9e+02 Score=24.17 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc------eeeeeccCCccEEEEEe-cCCEEEEEeCCCcEEEEECCCCce-------eE
Q psy18018 425 DGVHVVSGSLDTSIRVWEAESGN------LRHTLMGHQSLTSGMEL-RNNILVSGNADSTVKVWDIVSGQC-------LQ 490 (635)
Q Consensus 425 ~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-------~~ 490 (635)
++.+++..+.+|.++-..+..-. ....+.....-+..... ..+.++..+..|.+..++...-.. +.
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 34566677777777766654321 11122222222222222 345788888899888887543111 11
Q ss_pred EecCCCcccccEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q psy18018 491 TLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTG 529 (635)
Q Consensus 491 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~vwd~~~~ 529 (635)
-+.. . ....|.++.. ++..++..+..|.++...+..-
T Consensus 159 ~i~L-~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 159 GIKL-E-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp CCCC-C-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEcc-C-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 1111 1 2244544443 4668889999999998887643
No 383
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.83 E-value=2.9e+02 Score=23.76 Aligned_cols=144 Identities=10% Similarity=-0.090 Sum_probs=68.6
Q ss_pred EEEEEeCCCcEEEEECCCCce-eEEecCCCcccccEEEEEe-cCCEEEEEeCCCcEEEEECCCCceeeeeccceecCcee
Q psy18018 468 ILVSGNADSTVKVWDIVSGQC-LQTLSGRNKHQSAVTCLQF-NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFY 545 (635)
Q Consensus 468 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 545 (635)
.+++.+.+|.|+--....... ...+.. ...-+..+.. ....++..+..|.++-+....-.... -.+ .+.....
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke---~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r-~~G-~~i~~~i 78 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA---GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQG-EPLTGKL 78 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT---TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSS-SCC-EEGGGTC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC---CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcC-CCC-eEeeeee
Confidence 455667777776555432110 001111 2222222222 34566667778876665543211000 000 0000011
Q ss_pred EEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCce-----EEeeeeccCCCCCceEEEEEeC-CCCeEEEEccCCC
Q psy18018 546 FLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEF-----IRNLVSLDSGGSGGVVWRIRAS-ETKLVCAVGSRNG 619 (635)
Q Consensus 546 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~l~~s-~d~~~l~~~~~dg 619 (635)
.+.-...|.++....++.+|+.++..|.++...+..-.. +..+ .+ . ..+.+..+... .++..++..+.+|
T Consensus 79 ~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i-~L--~-~~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 79 TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALI-TL--P-ENAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECB-CC--C-TTCCBCCCEECCCTTCEEEEEETTS
T ss_pred cCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEE-EE--C-CCCEEEEEEEecCCCCEEEEEcCCC
Confidence 112234555554434566788899999999998754211 1111 11 1 22345454454 3455677788888
Q ss_pred e
Q psy18018 620 T 620 (635)
Q Consensus 620 ~ 620 (635)
.
T Consensus 155 ~ 155 (256)
T 1zvt_A 155 R 155 (256)
T ss_dssp E
T ss_pred e
Confidence 6
No 384
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.70 E-value=2e+02 Score=20.79 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=13.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeE
Q psy18018 466 NNILVSGNADSTVKVWDIVSGQCLQ 490 (635)
Q Consensus 466 ~~~l~s~~~dg~i~iwd~~~~~~~~ 490 (635)
+.+.+.-..||.+.+|+...+..+.
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vW 48 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVW 48 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEE
Confidence 4555555667777777653233333
No 385
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=24.68 E-value=2.1e+02 Score=20.98 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=3.8
Q ss_pred CCCeEEEEe
Q psy18018 570 DDGTVKLWD 578 (635)
Q Consensus 570 ~d~~v~iwd 578 (635)
.||.+.++|
T Consensus 69 ~dGNLVl~d 77 (119)
T 1b2p_A 69 PDGVLVVIT 77 (119)
T ss_dssp TTSCEEEEC
T ss_pred cCCEEEEEe
Confidence 344444444
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.87 E-value=1.4e+02 Score=29.02 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred eEEEEecCCCeEEEEeC-CCCc-------eEEeeeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeE
Q psy18018 563 RFVITSSDDGTVKLWDV-KTGE-------FIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEE 622 (635)
Q Consensus 563 ~~l~~~~~d~~v~iwd~-~~~~-------~~~~~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~ 622 (635)
..+..|..+|.|.=.-+ ..+. .+..+.. .....+|..|.++++..+|.+++.++.+.
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v---~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~ 486 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTV---FREPTTISAMELSTKQQQLYIGSTAGVAQ 486 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECC---SSSCCCCCEEEEETTTTEEEEEBSSCEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEee---cCCCCccceEEEcCCCCEEEEEECCeEEE
Confidence 35667888887753333 2221 1222221 12357899999999999999999998633
No 387
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.11 E-value=2.3e+02 Score=20.49 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=6.0
Q ss_pred EEEeCCCCeEEEE
Q psy18018 602 RIRASETKLVCAV 614 (635)
Q Consensus 602 ~l~~s~d~~~l~~ 614 (635)
.+.+..||.+++.
T Consensus 60 ~l~l~~dGNLVl~ 72 (113)
T 3mez_B 60 FMRLGHSGELDIT 72 (113)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCCcEEEE
Confidence 3444455554443
No 388
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=20.93 E-value=4.4e+02 Score=23.39 Aligned_cols=230 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEEccC-----------------CcceeEEEEEeeCCcEEEEEeCCCcEEEEeCCC---------C
Q psy18018 393 NNILVSGNADSTVKVWDIVS-----------------GTKKLMFRICLFDGVHVVSGSLDTSIRVWEAES---------G 446 (635)
Q Consensus 393 ~~~l~s~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~ 446 (635)
.+.+++.+.+|.|+--.+.. ..-.............++..+..|.++-+.... |
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Q ss_pred ceee---eeccCCccEEEEEe----cCCEEEEEeCCCcEEEEECC-------CCceeEEecCCCcccccEEEEEe-cCCE
Q psy18018 447 NLRH---TLMGHQSLTSGMEL----RNNILVSGNADSTVKVWDIV-------SGQCLQTLSGRNKHQSAVTCLQF-NSRF 511 (635)
Q Consensus 447 ~~~~---~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~v~~~~~-~~~~ 511 (635)
..+. .+...+..+..+.. ++.+++..+.+|.++--.+. .+.....+.. ...-+..... +...
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~---~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 83 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD---GDELIGVDLTSGEDE 159 (307)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT---TCCEEEEEEECTTCE
T ss_pred eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC---CCEEEEEEEeCCCCE
Q ss_pred EEEEeCCCcEEEEECCCCceeeeeccceecCceeEEeccCceecccccCCCeEEEEecCCCeEEEEeCCCCceEEe----
Q psy18018 512 VITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRN---- 587 (635)
Q Consensus 512 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~v~iwd~~~~~~~~~---- 587 (635)
++..+.+|.+..++... +........-.....+.-...|.++...+++..+++.+..|.++-.++..-.....
T Consensus 160 i~l~T~~G~~irf~~~~---v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESS---VRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp EEEEETTSEEEEEEGGG---SCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred EEEECCCCcEEEEEHHH---cCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Q ss_pred eeeccCCCCCceEEEEEeCCCCeEEEEccCCCeeEeEEEEEeeec
Q psy18018 588 LVSLDSGGSGGVVWRIRASETKLVCAVGSRNGTEETKLLVLDFDV 632 (635)
Q Consensus 588 ~~~~~~~~~~~~i~~l~~s~d~~~l~~~~~dg~~~~~l~~~d~~~ 632 (635)
..........+.+..+....+...|+..+.+|. +..++.+.
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~----~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGT----LVRTRVSE 277 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCC----EEEEEGGG
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCc----EEEEeccc
Done!