RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18018
(635 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 147 bits (374), Expect = 5e-40
Identities = 80/261 (30%), Positives = 120/261 (45%), Gaps = 46/261 (17%)
Query: 19 KVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKG 78
+ LKGH +TC+ FS P + + S + + W + + LKG
Sbjct: 3 RTLKGHTG-GVTCVAFS----PDGKLLATGSGDGTIKV--------WDLETGELLRTLKG 49
Query: 79 HDDHVITCLQFS-GSRIVSGSDDNTLKVWSATTGKC---------------------LLV 116
H V + G+ + SGS D T+++W TG+C +L
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109
Query: 117 SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEEC 174
S SRD T++VW +E+G+CL L GH V V + DG V S + D +K+W+ T +C
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169
Query: 175 LHAELQETE----VELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQ 230
+ T V S +++S S D T+K+W +TGKCL TL GH GV S
Sbjct: 170 VATLTGHTGEVNSVAFSPD---GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226
Query: 231 MA--GNIIISGSTDRTLKGWS 249
+ G ++ SGS D T++ W
Sbjct: 227 FSPDGYLLASGSEDGTIRVWD 247
Score = 141 bits (357), Expect = 9e-38
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 29/238 (12%)
Query: 356 VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVWDIVSG 413
+ SGS D +IR+W+ E+G TL GH S S + + IL S + D T+KVWD+ +G
Sbjct: 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125
Query: 414 TKKLMFR------ICLF---DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMEL 464
R + DG V S S D +I++W+ +G TL GH + +
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 465 --RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGT 520
L+S ++D T+K+WD+ +G+CL TL G H++ V + F + + + S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGT 242
Query: 521 VKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWD 578
+++WD++TGE L ++ + + + + + S DGT+++WD
Sbjct: 243 IRVWDLRTGECVQTLSG-----------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 140 bits (354), Expect = 3e-37
Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 38/286 (13%)
Query: 352 DGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNNI-LVSGNADSTVKVWD 409
DG + +GS D +I+VW+ E+G L TL GH + + L SG++D T+++WD
Sbjct: 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
Query: 410 IVSGTK-------KLMFRICLFDGVH--VVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS 460
+ +G F + S S D +I+VW+ E+G TL GH
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--W 137
Query: 461 GMELR----NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVIT 514
+ + S + D T+K+WD+ +G+C+ TL+G H V + F + +++
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLS 194
Query: 515 SSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574
SS DGT+KLWD+ TG+ L N + +S + + + S+DGT+
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSP---------DGYLLASGSEDGTI 243
Query: 575 KLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT 620
++WD++TGE ++ L + V + S A GS +GT
Sbjct: 244 RVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSADGT 284
Score = 137 bits (348), Expect = 2e-36
Identities = 100/402 (24%), Positives = 158/402 (39%), Gaps = 123/402 (30%)
Query: 134 CLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYALR 193
L GH V CV ++PD +
Sbjct: 1 LRRTLKGHTGGVTCVA-----------------FSPDGK--------------------- 22
Query: 194 SRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS-SQMA-GNIIISGSTDRTLKGWSNA 251
+ +GS D T+KVW TG+ LRTL GHTG V + A G + SGS+D+T++ W
Sbjct: 23 -LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD-- 79
Query: 252 ERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAA-- 309
L G+ + T H + + F +L ++
Sbjct: 80 ---LETGECVR----TLTGH-------------------TSYVSSVAFSPDGRILSSSSR 113
Query: 310 -QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVW 368
+T + W KCL H + V F DG V S S D +I++W
Sbjct: 114 DKTIKVWDVETG-------KCLTTLRGHTDWVNSVA----FSPDGTFVASSSQDGTIKLW 162
Query: 369 EAESGNLRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGTKKLMFRICLF-DGV 427
+ +G TL GH +V + DG
Sbjct: 163 DLRTGKCVATLTGHTG---------------------EVN-----------SVAFSPDGE 190
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQ-SLTSGMELRNN-ILVSGNADSTVKVWDIVS 485
++S S D +I++W+ +G TL GH+ + S + +L SG+ D T++VWD+ +
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
Query: 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
G+C+QTLSG H ++VT L + + + + + S DGT+++WD
Sbjct: 251 GECVQTLSG---HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 137 bits (347), Expect = 2e-36
Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 34/261 (13%)
Query: 375 LRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGTKKLMFR---------ICL 423
LR TL GH + + +L +G+ D T+KVWD+ +G +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 424 FDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN--ILVSGNADSTVKVW 481
DG ++ SGS D +IR+W+ E+G TL GH S S + + IL S + D T+KVW
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 482 DIVSGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSF 539
D+ +G+CL TL G H V + F + FV +SS DGT+KLWD++TG+ L
Sbjct: 121 DVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH- 176
Query: 540 ILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGV 599
+ +S + +++SS DGT+KLWD+ TG+ + L G
Sbjct: 177 -TGEVNSVAFSP---------DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-----GHENG 221
Query: 600 VWRIRASETKLVCAVGSRNGT 620
V + S + A GS +GT
Sbjct: 222 VNSVAFSPDGYLLASGSEDGT 242
Score = 130 bits (328), Expect = 9e-34
Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 56/275 (20%)
Query: 10 WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
W + + LKGH V + SS +++ + W
Sbjct: 36 WDLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSD--------KTIRL-WDLET 82
Query: 70 IKDPKVLKGHDDHVITCLQFSGSR--IVSGSDDNTLKVWSATTGKC-------------- 113
+ + L GH +V + + FS + S S D T+KVW TGKC
Sbjct: 83 GECVRTLTGHTSYV-SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 114 -------LLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMV 164
+ S S+D T+++W + +G+C+ L GH V V + DG+ ++S + D +
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201
Query: 165 KIWNPDTEECLHAELQETEVELSHGYALRSR--------IVSGSDDNTLKVWSATTGKCL 216
K+W+ T +CL L+ H + S + SGS+D T++VW TG+C+
Sbjct: 202 KLWDLSTGKCLG-TLR------GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254
Query: 217 RTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
+TL GHT V S + G + SGS D T++ W
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 128 bits (325), Expect = 2e-33
Identities = 98/347 (28%), Positives = 142/347 (40%), Gaps = 71/347 (20%)
Query: 74 KVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGE 133
+ LKGH +TC+ FS D L L +GS D T++VW +E+GE
Sbjct: 3 RTLKGHTG-GVTCVAFS--------PDGKL-----------LATGSGDGTIKVWDLETGE 42
Query: 134 CLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA 191
L L GH VR V DG + SG+ D +++W+ +T EC+ L +S
Sbjct: 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-TLTGHTSYVSSVAF 101
Query: 192 LRSR--IVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWSSQMAGN--IIISGSTDRTLKG 247
+ S S D T+KVW TGKCL TL GHT V S + + + S S D T+K
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161
Query: 248 WSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLR 307
W + + + +L + + F + L
Sbjct: 162 WD-----------LRTGKCVA-----------------TLTGHTGEVNSVAFSPDGEKLL 193
Query: 308 AA---QTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTS 364
++ T + W KCL H N V F DG + SGS D +
Sbjct: 194 SSSSDGTIKLWDLST-------GKCLGTLRGHENGVNSV----AFSPDGYLLASGSEDGT 242
Query: 365 IRVWEAESGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 409
IRVW+ +G TL GH + + + L SG+AD T+++WD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 98.6 bits (244), Expect = 8e-22
Identities = 78/332 (23%), Positives = 141/332 (42%), Gaps = 43/332 (12%)
Query: 88 QFSGSRIVSGSDDNTLKVWSATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRC 147
R + G ++ + + GK L S D T+++W + +G+ L L GH V
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203
Query: 148 VQY---DGKLVVSGAYDYMVKIWNPDTEECLHAELQETEVELSHGYA-LRSRIVSGSDDN 203
+ + G L+ SG+ D +++W+ T + L + L + ++ S + SGS D
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263
Query: 204 TLKVWSA-TTGKCLRTLIGHTGGVWSSQ--MAGNIIISGSTDRTLKGWSNAERILAIGQL 260
T+++W ++ LRTL GH+ V S G ++ SGS+D T++ W
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD----------- 312
Query: 261 IDSCEPTQIRHMMQLIEPQFQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAE 320
+E ++L E + L+F LL + ++
Sbjct: 313 ---------------LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG--------GSD 349
Query: 321 DNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLM 380
D + L + F DG V SGS D ++R+W+ +G+L L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 381 GHQSLTSGMELRNN--ILVSGNADSTVKVWDI 410
GH S + ++ + L SG++D+T+++WD+
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
Score = 97.5 bits (241), Expect = 2e-21
Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 42/311 (13%)
Query: 349 FQFDGVHVVSGS-LDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNN---ILVSGNADST 404
F DG + SGS LD +I++W+ +G TL GH S + + ++ SG++D T
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 405 VKVWDI---------VSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMG 454
+++WD+ +SG + DG + SGS D +IR+W+ S +L TL G
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282
Query: 455 HQSLTSGMEL--RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFN---S 509
H S + +L SG++D TV++WD+ +G+ L +L+ + H+ V+ L F+ S
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HEGPVSSLSFSPDGS 341
Query: 510 RFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSS 569
V SDDGT++LWD++TG+ L + F + R V + S
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP------------DGRVVSSGS 389
Query: 570 DDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVGSRNGT-----EETK 624
DGTV+LWD+ TG +RNL G V + S A GS + T +T
Sbjct: 390 TDGTVRLWDLSTGSLLRNL-----DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
Query: 625 LLVLDFDVDSK 635
L + F D K
Sbjct: 445 LKSVSFSPDGK 455
Score = 94.8 bits (234), Expect = 1e-20
Identities = 118/465 (25%), Positives = 196/465 (42%), Gaps = 66/465 (14%)
Query: 109 TTGKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKI 166
+ LL++ D+ + + + S L GH ++ + + DG+L++SG+ D +K+
Sbjct: 36 SESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDGTIKL 91
Query: 167 WNPDTEECLHAELQETEVELSHGYALRSR------IVSGSDDNTLKVWSATT-GKCLRTL 219
W+ D E L L+ AL S + S S D T+K+W +T GK +RTL
Sbjct: 92 WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151
Query: 220 IGHTGGVWSSQMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQ 279
GH+ V S +S ++LA G +D ++L + +
Sbjct: 152 EGHSESVTSLA-----------------FSPDGKLLASGSSLDGT--------IKLWDLR 186
Query: 280 FQRDFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNK 339
+ +L + L F LL A+ + LW + +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG------TIRLWDLSTGKLLRSTLSG 240
Query: 340 KTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESG-NLRHTLMGHQSLTSGMEL--RNNIL 396
+ F DG + SGS D +IR+W+ S +L TL GH S + +L
Sbjct: 241 HSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 397 VSGNADSTVKVWDIVSGTKKLMFRICLFDGV------------HVVSGSLDTSIRVWEAE 444
SG++D TV++WD+ +G + +G V GS D +IR+W+
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
Query: 445 SGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVT 503
+G TL GH ++ S ++ SG+ D TV++WD+ +G L+ L G H S VT
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG---HTSRVT 416
Query: 504 CLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYF 546
L F + + + + S D T++LWD+KT S +
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
Score = 94.8 bits (234), Expect = 1e-20
Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 35/288 (12%)
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGN--LRHTLMGHQSLTSGMELRNN-----ILVSGNA 401
F DG ++SGS D +I++W+ ++G ++ H S S + L + +L S +
Sbjct: 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132
Query: 402 DSTVKVWDIVSGTKKLMFRICLFDGV-----------HVVSGSLDTSIRVWEAESGNLRH 450
D TVK+WD+ + K + + V SLD +I++W+ +G
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192
Query: 451 TLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQF 507
TL GH S + + ++ SG++D T+++WD+ +G+ L++ S V+
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHSDSVVSSFSP 251
Query: 508 NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVIT 567
+ + + S DGT++LWD+++ +S +S +L + + + +
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSG----------HSSSVLSVAFSPDGKLLAS 301
Query: 568 SSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAVG 615
S DGTV+LWD++TG+ + SL G G V + S + G
Sbjct: 302 GSSDGTVRLWDLETGKLL---SSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Score = 90.9 bits (224), Expect = 3e-19
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 37/271 (13%)
Query: 340 KTHVPDLFGFQF---DGVHVVSGSLDTSIRVWEAESGN-LRHTLMGHQSLTSG-MELRNN 394
H + F G+ + SGS D +IR+W+ +G LR TL GH +
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254
Query: 395 ILVSGNADSTVKVWDIVSGTKKLMFRI--------CLFDGVH--VVSGSLDTSIRVWEAE 444
+L SG++D T+++WD+ S + L F + SGS D ++R+W+ E
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Query: 445 SGNLRH--TLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQ 499
+G L TL GH+ S + + ++ G+ D T+++WD+ +G+ L+TL +
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL----EGH 370
Query: 500 SAVTCLQF--NSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLLCPH 557
S V + F + R V + S DGTV+LWD+ TG L + +
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH-----------TSRVTSLD 419
Query: 558 LQFNSRFVITSSDDGTVKLWDVKTGEFIRNL 588
+ + + + S D T++LWD+KT +
Sbjct: 420 FSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Score = 89.0 bits (219), Expect = 1e-18
Identities = 107/467 (22%), Positives = 179/467 (38%), Gaps = 78/467 (16%)
Query: 24 HDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHV 83
+ + G S S + S + + + + +L+GH+D +
Sbjct: 10 ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL-LLRGHEDSI 68
Query: 84 IT-CLQFSGSRIVSGSDDNTLKVWSATTGK--------------------------CLLV 116
+ G ++SGS D T+K+W G+ LL
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 117 SGSRDATLRVWHIES-GECLHVLVGHLAAVRCVQY---DGKLVVSGAYDYMVKIWNPDTE 172
S S D T+++W + + G+ + L GH +V + + L + D +K+W+ T
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188
Query: 173 ECLHAELQETEVELSHGYA--LRSRIVSGSDDNTLKVWSATTGKCLR-TLIGHTGGVWSS 229
+ L T+ S ++ I SGS D T+++W +TGK LR TL GH+ V SS
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248
Query: 230 -QMAGNIIISGSTDRTLKGWSNAERILAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
G+++ SGS+D T++ W S T H ++ F D L
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSS--------SSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 289 PRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKKTHVPDLFG 348
+ T R W D + H V L
Sbjct: 301 ----------------SGSSDGTVRLW-----DLETGKLLSSLTLKGHEGP---VSSLSF 336
Query: 349 FQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTS-GMELRNNILVSGNADSTVKV 407
+ V GS D +IR+W+ +G TL GH ++ S ++ SG+ D TV++
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396
Query: 408 WDIVSGT-----KKLMFRICL----FDGVHVVSGSLDTSIRVWEAES 445
WD+ +G+ R+ DG + SGS D +IR+W+ ++
Sbjct: 397 WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Score = 85.9 bits (211), Expect = 1e-17
Identities = 73/270 (27%), Positives = 105/270 (38%), Gaps = 42/270 (15%)
Query: 10 WRTRPIKDPKVLKGHDDHVITCLQFSGKSFPCESFIRSSSPWKALFMSHRSVEINWRTRP 69
W R K L GH D V + L FS S W
Sbjct: 183 WDLRTGKPLSTLAGHTDPV-SSLAFS-----------PDGGLLIASGSSDGTIRLWDLST 230
Query: 70 -IKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKCL-------------- 114
L GH D V++ GS + SGS D T+++W + L
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 115 --------LVSGSRDATLRVWHIESGECLHVL--VGHLAAVRCVQY---DGKLVVSGAYD 161
L SGS D T+R+W +E+G+ L L GH V + + LV G+ D
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 162 YMVKIWNPDTEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLRTLIG 221
+++W+ T + L + V + SGS D T+++W +TG LR L G
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 222 HTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
HT V S + G + SGS+D T++ W
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
Score = 83.2 bits (204), Expect = 8e-17
Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 39/306 (12%)
Query: 335 LHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELR-- 392
L + + G G+ +++ D+ + + + S LR GH+ + +
Sbjct: 21 LGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR----GHEDSITSIAFSPD 76
Query: 393 NNILVSGNADSTVKVWDIVSGTKKLM------------FRICLFDGVHVVS--GSLDTSI 438
+L+SG++D T+K+WD+ +G K + + DG ++ SLD ++
Sbjct: 77 GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136
Query: 439 RVWEAES-GNLRHTLMGHQSLTSGMELRNN---ILVSGNADSTVKVWDIVSGQCLQTLSG 494
++W+ + G L TL GH + + + + + D T+K+WD+ +G+ L TL+G
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 495 RNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVKTGEFSTPLMSSFILNPFYFLIYSQPLL 554
S++ + + S DGT++LWD+ TG+ L S+ + + P
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK---LLRSTLSGHSDSVVSSFSP-- 251
Query: 555 CPHLQFNSRFVITSSDDGTVKLWDVKTGEFIRNLVSLDSGGSGGVVWRIRASETKLVCAV 614
+ + + S DGT++LWD+++ +L+ SG S V + S + A
Sbjct: 252 ------DGSLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSS-VLSVAFSPDGKLLAS 301
Query: 615 GSRNGT 620
GS +GT
Sbjct: 302 GSSDGT 307
Score = 44.7 bits (104), Expect = 1e-04
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 66 RTRPIKDPKVLKGHDDHVITCLQFSGSR---IVSGSDDNTLKVWSATTGKCLLV------ 116
T + LKGH+ ++ L FS + GSDD T+++W TGK L
Sbjct: 314 ETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
Query: 117 --------------SGSRDATLRVWHIESGECLHVLVGHLAAVRCVQY--DGKLVVSGAY 160
SGS D T+R+W + +G L L GH + V + + DGK + SG+
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 161 DYMVKIWNPDTEEC 174
D +++W+ T
Sbjct: 433 DNTIRLWDLKTSLK 446
Score = 31.6 bits (70), Expect = 1.3
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 21/91 (23%)
Query: 65 WRTRPIKDPKVLKGHDDHVITCLQFSGSRIVSGSDDNTLKVWSATTGKC----------- 113
W R K K L+GH + + G + SGS D T+++W +TG
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415
Query: 114 ----------LLVSGSRDATLRVWHIESGEC 134
L SGS D T+R+W +++
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like. This is an F-box-like family.
Length = 47
Score = 65.6 bits (161), Expect = 7e-14
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 285 ISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
+S LP E+ L + ++L P DLLR A CR WR LA D+ LWR CL
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46
>gnl|CDD|201368 pfam00646, F-box, F-box domain. This domain is approximately 50
amino acids long, and is usually found in the N-terminal
half of a variety of proteins. Two motifs that are
commonly found associated with the F-box domain are the
leucine rich repeats (LRRs; pfam00560 and pfam07723) and
the WD repeat (pfam00400). The F-box domain has a role
in mediating protein-protein interactions in a variety
of contexts, such as polyubiquitination, transcription
elongation, centromere binding and translational
repression.
Length = 48
Score = 46.8 bits (112), Expect = 4e-07
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 283 DFISLLPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREKCL 330
+ LP +L L +L+ L P+DLLR + + WR L + LW+++ L
Sbjct: 1 FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 44.6 bits (106), Expect = 2e-06
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 485 SGQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
SG+ L+TL G H VT + F + +++ + SDDGT+KLWD
Sbjct: 1 SGELLKTLKG---HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 40.8 bits (96), Expect = 3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 131 SGECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
SGE L L GH V V + DGK + SG+ D +K+W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107
K LKGH V T + FS G + SGSDD T+K+W
Sbjct: 6 KTLKGHTGPV-TSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 36.5 bits (85), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 212 TGKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
+G+ L+TL GHTG V S + G + SGS D T+K W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.041
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 372 SGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 409
SG L TL GH + + L SG+ D T+K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.041
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 445 SGNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 482
SG L TL GH + + L SG+ D T+K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 30.0 bits (68), Expect = 0.28
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 561 NSRFVITSSDDGTVKLWD 578
+ +++ + SDDGT+KLWD
Sbjct: 23 DGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.5 bits (103), Expect = 4e-06
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 486 GQCLQTLSGRNKHQSAVTCLQF--NSRFVITSSDDGTVKLWD 525
G+ L+TL G H VT + F + + + SDDGTV++WD
Sbjct: 1 GKLLRTLKG---HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 39.6 bits (93), Expect = 9e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 132 GECLHVLVGHLAAVRCVQY--DGKLVVSGAYDYMVKIWN 168
G+ L L GH V V + DG L+ SG+ D V++W+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 74 KVLKGHDDHVITCLQFS--GSRIVSGSDDNTLKVWS 107
+ LKGH V T + FS G+ + SGSDD T++VW
Sbjct: 5 RTLKGHTGPV-TSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.8 bits (83), Expect = 0.002
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 213 GKCLRTLIGHTGGVWSSQMA--GNIIISGSTDRTLKGWS 249
GK LRTL GHTG V S + GN++ SGS D T++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.4 bits (69), Expect = 0.17
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 561 NSRFVITSSDDGTVKLWD 578
+ + + SDDGTV++WD
Sbjct: 22 DGNLLASGSDDGTVRVWD 39
Score = 29.2 bits (66), Expect = 0.44
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 373 GNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 409
G L TL GH + + N+L SG+ D TV+VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 29.2 bits (66), Expect = 0.44
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 446 GNLRHTLMGHQSLTSGMEL--RNNILVSGNADSTVKVWD 482
G L TL GH + + N+L SG+ D TV+VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 26.9 bits (60), Expect = 3.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 349 FQFDGVHVVSGSLDTSIRVW 368
F DG + SGS D ++RVW
Sbjct: 19 FSPDGNLLASGSDDGTVRVW 38
Score = 26.2 bits (58), Expect = 5.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 425 DGVHVVSGSLDTSIRVW 441
DG + SGS D ++RVW
Sbjct: 22 DGNLLASGSDDGTVRVW 38
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets.
Length = 41
Score = 42.0 bits (100), Expect = 2e-05
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 288 LPRELALYVLTFLQPEDLLRAAQTCRSWRFLAEDNLLWREK 328
LP E+ +L+ L P+DLLR + R WR L + + W +
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 47.8 bits (113), Expect = 2e-05
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 37 KSFPCESFIRSSS----PWKALFMSHRSVEINWRTRPIKDPKVLKGHDDHVITCLQFSGS 92
K F CES I+ P L + I W + IK +V + + V+ + S
Sbjct: 508 KIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY-IKS-QVASSNFEGVVQVWDVARS 565
Query: 93 RIVSGSDDNTLKVWS---ATTGKCLLVSGSRDATLRVWHIESGECLHVLVGHL---AAVR 146
++V+ ++ +VWS ++ LL SGS D ++++W I G V +G + A +
Sbjct: 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSIGTIKTKANIC 621
Query: 147 CVQY---DGKLVVSGAYDYMVKIW---NPDTEECLHAELQETEVELSHGYALRSRIVSGS 200
CVQ+ G+ + G+ D+ V + NP C +T + + S +VS S
Sbjct: 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR--FVDSSTLVSSS 679
Query: 201 DDNTLKVW------SATTGKCLRTLIGHT 223
DNTLK+W S L + +GHT
Sbjct: 680 TDNTLKLWDLSMSISGINETPLHSFMGHT 708
Score = 43.9 bits (103), Expect = 3e-04
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 428 HVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRN---NILVSGNADSTVKVWDIV 484
V S + + ++VW+ L + H+ ++ + +L SG+ D +VK+W I
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 485 SGQCLQTLSGRNKHQSAVTCLQFNS---RFVITSSDDGTVKLWDVKTGEFSTPLMSSFIL 541
G + T+ K ++ + C+QF S R + S D V +D++ + PL +
Sbjct: 607 QGVSIGTI----KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCT---- 656
Query: 542 NPFYFLIYSQPLLCPHLQF-NSRFVITSSDDGTVKLWDV 579
+ +++F +S +++SS D T+KLWD+
Sbjct: 657 ------MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689
Score = 38.9 bits (90), Expect = 0.009
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 40/223 (17%)
Query: 347 FGFQFDGVHVVSGSLDTSIRVWEAES----GNLRH---TLMGHQSLTSGMELRNNI---L 396
GF DG + ++ I+++E ES G H + +S SG+ + I +
Sbjct: 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQV 548
Query: 397 VSGNADSTVKVWDIVSGT--------KKLMFRICL--FDGVHVVSGSLDTSIRVWEAESG 446
S N + V+VWD+ +K ++ I D + SGS D S+++W G
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608
Query: 447 NLRHTLMGHQSLT-------SGMELRNNILVSGNADSTVKVWDIVSGQC-LQTLSGRNKH 498
T+ ++ SG L G+AD V +D+ + + L T+ G H
Sbjct: 609 VSIGTIKTKANICCVQFPSESGRSL-----AFGSADHKVYYYDLRNPKLPLCTMIG---H 660
Query: 499 QSAVTCLQF-NSRFVITSSDDGTVKLWDVK---TGEFSTPLMS 537
V+ ++F +S +++SS D T+KLWD+ +G TPL S
Sbjct: 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703
Score = 31.2 bits (70), Expect = 2.0
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 192 LRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGVWS---SQMAGNIIISGSTDRTLKGW 248
++S++ S + + ++VW + + + H VWS S ++ SGS D ++K W
Sbjct: 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603
Query: 249 S 249
S
Sbjct: 604 S 604
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 38.0 bits (88), Expect = 0.013
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 424 FDGVHVVSGSLDTSIRVW--------EAESGNLRHTLMGHQSLTSGMELR---NNILVSG 472
FD + + S D +I W + S + H L GH + N+L S
Sbjct: 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASA 144
Query: 473 NADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSR--FVITSSDDGTVKLWDVKTG 529
AD V VWD+ G+ ++ + H +T L++N + T+S D + + D + G
Sbjct: 145 GADMVVNVWDVERGKAVEVIKC---HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
Score = 35.3 bits (81), Expect = 0.10
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 30/161 (18%)
Query: 351 FDGVHVVSGSLDTSIRVW--------EAESGNLRHTLMGHQSLTSGMELR---NNILVSG 399
FD + + S D +I W + S + H L GH + N+L S
Sbjct: 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASA 144
Query: 400 NADSTVKVWDIVSGTKKLMFRICL----------FDGVHVVSGSLDTSIRVWEAESGNLR 449
AD V VWD+ G + + C DG + + S D + + + G +
Sbjct: 145 GADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203
Query: 450 HTLMGHQSLTSGMEL---RNNILV----SGNADSTVKVWDI 483
++ H S S L R ++++ S + + +WD
Sbjct: 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 35.7 bits (82), Expect = 0.085
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 340 KTHVPDLFGFQFDGVH---VVSGSLDTSIRVWE--------AESGNLRHTLMGHQ---SL 385
K H + QF+ + SGS D +IRVWE E + + L GH+ S+
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 386 TSGMELRNNILVSGNADSTVKVWDI 410
+ I+ S DS V +WDI
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 33.4 bits (76), Expect = 0.41
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 42/143 (29%)
Query: 423 LFDGVHVVSGSLDTS--------IRV-WEAESGNL----------RH----TLMGHQSLT 459
LFD + + S +D+ + V WE E G L R L GH S
Sbjct: 18 LFDDLRICSRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTS-- 75
Query: 460 SGMELRNN-----ILVSGNADSTVKVWDIVSG----------QCLQTLSGRNKHQSAVTC 504
S ++L+ N IL SG+ D T++VW+I QC+ L G K S +
Sbjct: 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKKISIIDW 133
Query: 505 LQFNSRFVITSSDDGTVKLWDVK 527
N + +S D V +WD++
Sbjct: 134 NPMNYYIMCSSGFDSFVNIWDIE 156
Score = 32.6 bits (74), Expect = 0.64
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 114 LLVSGSRDATLRVWHI--------ESGECLHVLVGHLAAVRCVQYDGK---LVVSGAYDY 162
+L SGS D T+RVW I E + +L GH + + ++ ++ S +D
Sbjct: 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148
Query: 163 MVKIWNPDTEE 173
V IW+ + E+
Sbjct: 149 FVNIWDIENEK 159
>gnl|CDD|235958 PRK07194, fliG, flagellar motor switch protein G; Reviewed.
Length = 334
Score = 34.6 bits (80), Expect = 0.16
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 28/120 (23%)
Query: 248 WSNAERIL--AIGQ-----LIDSCEPTQIRHMMQLIE---------------PQFQRDFI 285
S +R L A+G LI+S +IRH MQ ++ Q Q F+
Sbjct: 77 RSYLQRTLNKALGGDIAKSLINSIYGDEIRHRMQRLQWVDPQQLARLIANEHLQMQAVFL 136
Query: 286 SLLPRELALYVLTFLQPED-----LLRAAQTCRSWRFLAEDNLLWREKCLEAATLHRNKK 340
+ LP E A VL +L PED L R AQ R + ++ E+CL + + K
Sbjct: 137 AFLPPESAAAVLKYL-PEDRQDDILYRIAQLDDVDRDVVDELDELIERCLAVLSEQSHTK 195
>gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain. This domain contains several
repeats of the PQQ repeat.
Length = 234
Score = 33.5 bits (77), Expect = 0.21
Identities = 46/245 (18%), Positives = 81/245 (33%), Gaps = 40/245 (16%)
Query: 364 SIRVWEAESGN-LRHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSG----TKKLM 418
+ +A +G L +G +L G+ + L + D +G K L
Sbjct: 4 VVAALDAATGKVLWRVDLGGTALGGGVAVDGGRLYVATGKGELVALDAATGKLLWRKDLS 63
Query: 419 FRIC---LFDGVHVVSGSLDTSIRVWEAESGNLRHT-LMGHQSLT----SGMELRNNILV 470
I G VV + D S+ +AE+G L + LT S + + ++
Sbjct: 64 GEILGAPTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPAIVGDTVI 123
Query: 471 SGNADSTVKVWDIVSGQCL-QTLSGRNKHQSAVTCLQ-------FNSRFVITSSDDGTVK 522
G + + D +G+ L + + S + L + V SS G +
Sbjct: 124 VGFSSGKLVALDPKTGKVLWEAPVAAPRGGSEIERLVDITGTPVVDGGRVYASSYQGRLV 183
Query: 523 LWDVKTGE--FSTPLMSSFILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVK 580
D+ TG+ +S + S L++ DDG + D
Sbjct: 184 ALDLATGKVLWSREISSINGPAVDGGLLF-----------------VVDDDGELVALDRA 226
Query: 581 TGEFI 585
TG +
Sbjct: 227 TGAVL 231
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 32.3 bits (73), Expect = 0.82
Identities = 45/206 (21%), Positives = 71/206 (34%), Gaps = 47/206 (22%)
Query: 392 RNNILVSGNADSTVKVWDIVSGTKKLMFRICLFDGVHVVSGSLDTSIRVWEAESGNLRHT 451
RN+ L+S N D T+K+W I K++ L D H G TS + E L
Sbjct: 99 RNHFLLSTN-DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK--ELLLPRLSE- 154
Query: 452 LMGHQSLTSGMELRNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS-R 510
H + + R N H + + FNS +
Sbjct: 155 ---HDEIIAAKPCRVY---------------------------ANAHPYHINSISFNSDK 184
Query: 511 FVITSSDDGTVKLW--DVKTGEFSTPLMSSFILNPFYFLIYS---QPLLCPHLQFNSRFV 565
+ S+DD + LW ++ G F+ + + +I S P +C +
Sbjct: 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY----- 239
Query: 566 ITSSDDGTVKLWDVKTGEFIRNLVSL 591
SS G +KL D++ N L
Sbjct: 240 --SSSKGEIKLNDLRQSALCDNSKKL 263
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 31.6 bits (72), Expect = 1.6
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 502 VTCLQFNSRFVITSS----DDGTVKLWDVKTGEFSTPLMSSFILNPFYFL 547
+ L +R + + S D G + +D++TGEF F +L
Sbjct: 115 ASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEE--EGFKFPGISWL 162
>gnl|CDD|182129 PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small
permease protein YiaM; Provisional.
Length = 157
Score = 30.3 bits (68), Expect = 1.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 239 GSTDRTLKGWSNAERILA--IGQLIDSCEPT-------QIRHMMQLI 276
G+T +T++ WS+ IL IG + +C PT ++RH+ QLI
Sbjct: 98 GATLKTIQDWSDYSPILGLPIGLMYAACLPTSLVIALFELRHLYQLI 144
>gnl|CDD|216258 pfam01037, AsnC_trans_reg, AsnC family. The AsnC family is a
family of similar bacterial transcription regulatory
proteins.
Length = 73
Score = 28.3 bits (64), Expect = 2.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 156 VSGAYDYMVKIWNPDTEE 173
V+G YDY++K+ D E
Sbjct: 30 VTGDYDYLLKVVARDMEA 47
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a
nucleoporin that is crucial for nuclear pore complex
(NPC) biogenesis. The N terminal forms a seven-bladed
beta propeller structure. This family now contains other
sized nucleoporins, including Nup155, Nup8, Nuo132,
Nup15 and Nup170.
Length = 411
Score = 30.5 bits (69), Expect = 3.1
Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 465 RNNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLW 524
R +L + + T++VWD+ + + + ++ + LQ + ++ ++K+
Sbjct: 202 RGRLLYTLTSKGTIRVWDLSPSGE-KLVREVDIYEIILRDLQESIPKSASTLSSKSLKIL 260
Query: 525 DV 526
D+
Sbjct: 261 DI 262
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 30.0 bits (68), Expect = 3.5
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
Query: 468 ILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWDVK 527
VS D+T+ V D + + +T + + +T + + +SD TV++ D
Sbjct: 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITFSKDGKLLYVCASDSDTVQVIDPA 61
Query: 528 TGEFSTPLMSS-----FILNPFYFLIYSQPLLCPHLQFNSRFVITSSDDGTVKLWDVKT 581
TGE L S F L+P ++Y I + DD V + D++T
Sbjct: 62 TGEVLHTLPSGPDPELFALHPNGKILY----------------IANEDDALVTVIDIET 104
>gnl|CDD|221182 pfam11715, Nup160, Nucleoporin Nup120/160. Nup120 is conserved
from fungi to plants to humans, and is homologous with
the Nup160 of vertebrates. The nuclear core complex, or
NPC, mediates macromolecular transport across the
nuclear envelope. Deletion of the NUP120 gene causes
clustering of NPCs at one side of the nuclear envelope,
moderate nucleolar fragmentation and slower cell growth.
The vertebrate NPC is estimated to contain between 30
and 60 different proteins. most of which are not known.
Two important ones in creating the nucleoporin basket
are Nup98 and Nup153, and Nup120, in conjunction with
Nup 133, interacts with these two and itself plays a
role in mRNA export. Nup160, Nup133, Nup96, and Nup107
are all targets of phosphorylation. The phosphorylation
sites are clustered mainly at the N-terminal regions of
these proteins, which are predicted to be natively
disordered. The entire Nup107-160 subcomplex is stable
throughout the cell cycle, thus it seems unlikely that
phosphorylation affects interactions within the
Nup107-160 subcomplex, but rather that it regulates the
association of the subcomplex with the NPC and other
proteins.
Length = 511
Score = 29.8 bits (67), Expect = 4.5
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 111 GKCLLVSGSRDATLRVWHIESGECLHVLVGHLAAVRCVQYDGKLVVSGAYDYMVKIWNPD 170
G+ L + S D TLRVW++++G+C + SG Y+ ++P
Sbjct: 231 GQTFLFTLSLDGTLRVWNLDTGQCA--------------FLPSRADSGGSRYLCVTYSPF 276
Query: 171 TEECLHAELQETEVELSHGYALRSRIVSGSDDNTLKVWSATT 212
+ + G + S ++ S + L +
Sbjct: 277 SSGEF------KFFSVKSGALVDSSVIEDSFPDALLLPLDPD 312
Score = 29.4 bits (66), Expect = 7.2
Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 37/183 (20%)
Query: 421 ICLFDG--VHVVSGSLDTSIRVWEAESGNLRHTLMGHQSLTSGMELRNNILVSGNA---- 474
+ L DG + + S DT VW+ L + L + L S A
Sbjct: 164 VSLADGGLLKLTRSSGDTDGAVWKETLYGPSSWLRSLRGLLPFQRYGKDRLASSAAASTI 223
Query: 475 -----------------DSTVKVWDIVSGQCL-QTLSGRNKHQSAVTCLQFNSRFVITSS 516
D T++VW++ +GQC + + C+ + +
Sbjct: 224 VSSSEVNGQTFLFTLSLDGTLRVWNLDTGQCAFLPSRADSGGSRYL-CVTY------SPF 276
Query: 517 DDGTVKLWDVKTGEFSTPLMSSFILNP--FYFLIYSQPLLCPHLQFNSRFVITSSDDGTV 574
G K + VK+G + L Q + SS
Sbjct: 277 SSGEFKFFSVKSGALVDSSVIEDSFPDALLLPLDPDSFRTLADFQEDLIDFGLSST---- 332
Query: 575 KLW 577
KLW
Sbjct: 333 KLW 335
>gnl|CDD|99727 cd06406, PB1_P67, A PB1 domain is present in p67 proteins which
forms a signaling complex with p40, a crucial step for
activation of NADPH oxidase during phagocytosis. PB1
domain is a modular domain mediating specific
protein-protein interactions which play a role in many
critical cell processes . A canonical PB1-PB1
interaction, which involves heterodimerization of two
PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1. There
are three types of PB1 domains: type I which contains an
OPCA motif, acidic aminoacid cluster, type II which
contains a basic cluster, and type I/II which contains
both an OPCA motif and a basic cluster. Interactions of
PB1 domains with other protein domains have been
described as noncanonical PB1-interactions. The PB1
domain module is conserved in amoebas, fungi, animals,
and plants. The p67 proteins contain a type II PB1
domain.
Length = 80
Score = 27.8 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 178 ELQETEVELSHGYALRSRIVSGSDDNTLKVWSATTGKCLR 217
EL + LS+ V SD N VWS CL
Sbjct: 35 ELPAEHITLSYKSEASGEDVILSDTNMEDVWSQAKDGCLT 74
>gnl|CDD|217606 pfam03543, Peptidase_C58, Yersinia/Haemophilus virulence surface
antigen.
Length = 203
Score = 29.4 bits (66), Expect = 5.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 512 VITSSDDGTVKLWDVKTGEFSTPLMSSF 539
V S D G V +D GEF+ P SF
Sbjct: 145 VAASVDGGKVTFFDPNFGEFTFPSKESF 172
>gnl|CDD|111000 pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.
Length = 669
Score = 29.6 bits (66), Expect = 6.2
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 316 RFLAEDNLLWREKCLEAATLHRNKKTHVPDLFGFQFDGVHVVSGSLDTSIRVWEAESGNL 375
+ +A DNL W + A+ L + V D+ G + G H V + T ++W +E +
Sbjct: 206 KIIASDNL-WEP--ISASMLLDQELWKVVDVIGAHYPGTHTVKDAKLTGKKLWSSEDFST 262
Query: 376 RHTLMGHQSLTSGMELRNNILVSGNADSTVKVWDIVS 412
++ +G + N ++G ST+ W++V+
Sbjct: 263 LNSDVGAGCWG---RILNQNYINGYMTSTI-AWNLVA 295
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 29.4 bits (67), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 255 LAIGQLIDSCEPTQIRHMMQLIEPQFQRDFISLL 288
L IG+LIDS +MQL+ F ++ +++L
Sbjct: 197 LKIGELIDS-------EIMQLLPVDFAKELVAIL 223
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 29.4 bits (66), Expect = 7.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 466 NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNS 509
NN+ GN ++T++ + G + G VT +QFNS
Sbjct: 239 NNLGHPGNYETTLESMKLPDGVKPRPEDGERDQVLYVTHVQFNS 282
>gnl|CDD|148096 pfam06282, DUF1036, Protein of unknown function (DUF1036). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 115
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 127 WHIESGECLHVLVGHLAA----VRCVQYDGKLVVSGAY 160
W I+ G+C ++ G L + + DG G
Sbjct: 34 WTIDPGKCETLIEGPLKSRYYYLYAEDADGGGRWGGDI 71
>gnl|CDD|182485 PRK10472, PRK10472, low affinity gluconate transporter;
Provisional.
Length = 445
Score = 29.0 bits (65), Expect = 9.8
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 186 LSH----GYALRSRIVSGSDDNTLKVWSATTGKCLRTLIGHTGGV 226
+SH G+ L + ++ TLK W+ + T++G G +
Sbjct: 397 VSHVNDAGFWLFGKFTGATEAQTLKTWTM-----METILGTVGAI 436
>gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related
proteins. This family is composed of dehydrogenases
with pyrroloquinoline quinone (PQQ) as a cofactor, such
as ethanol, methanol, and membrane-bound glucose
dehydrogenases. The alignment model contains an 8-bladed
beta-propeller, and the family also includes distantly
related proteins which are not enzymatically active and
do not bind PQQ.
Length = 434
Score = 28.7 bits (64), Expect = 9.8
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 466 NNILVSGNADSTVKVWDIVSGQCLQTLSGRNKHQSAVTCLQFNSRFVITSSDDGTVKLWD 525
+ L A+ + D V+G + S + L V + DG +K ++
Sbjct: 313 DRELFYVPANGRIMALDPVTGVVVWEKSELHPLLGGP--LSTAGNLVFVGTSDGYLKAYN 370
Query: 526 VKTGEF--STPLMSSFILNP 543
TGE + S F P
Sbjct: 371 ADTGEKLWQQKVPSGFQAEP 390
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.416
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,455,320
Number of extensions: 2992479
Number of successful extensions: 2380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 81
Length of query: 635
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 532
Effective length of database: 6,369,140
Effective search space: 3388382480
Effective search space used: 3388382480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)