Query psy18019
Match_columns 827
No_of_seqs 443 out of 1953
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:26:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 2.7E-49 9.3E-54 434.3 17.8 277 352-641 16-306 (334)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.1E-48 3.8E-53 424.8 21.2 262 357-640 5-271 (310)
3 3qye_A TBC1 domain family memb 100.0 2.2E-47 7.7E-52 418.1 23.0 273 354-640 27-304 (331)
4 2qfz_A TBC1 domain family memb 100.0 1.6E-47 5.3E-52 421.7 20.4 284 348-647 17-336 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 2.6E-47 9E-52 427.6 22.6 275 353-641 4-376 (396)
6 4hl4_A TBC1 domain family memb 100.0 4.2E-44 1.4E-48 386.1 15.8 267 351-646 14-288 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.2E-35 7.5E-40 318.2 15.7 258 358-648 27-287 (294)
8 3hzj_A Rabgap1L, RAB GTPase-ac 99.8 6.5E-20 2.2E-24 198.8 11.3 164 220-399 22-201 (310)
9 2qq8_A TBC1 domain family memb 99.8 2.4E-20 8.2E-25 204.5 7.3 114 217-331 34-184 (334)
10 3qye_A TBC1 domain family memb 99.8 2.4E-19 8.3E-24 195.9 13.6 168 220-399 48-235 (331)
11 1fkm_A Protein (GYP1P), ORF YO 99.7 8.9E-18 3.1E-22 188.2 12.2 162 221-399 23-243 (396)
12 4hl4_A TBC1 domain family memb 99.7 2E-18 6.7E-23 185.8 4.1 101 230-330 48-159 (292)
13 2qfz_A TBC1 domain family memb 99.7 1.6E-17 5.3E-22 182.7 10.2 160 222-399 41-256 (345)
14 3qwl_A TBC1 domain family memb 98.0 1.8E-06 6.3E-11 92.8 2.2 100 218-330 37-162 (294)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=434.34 Aligned_cols=277 Identities=26% Similarity=0.491 Sum_probs=231.4
Q ss_pred HHHHHHHHHH-HhhhcCCCCC-HHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHH
Q psy18019 352 IELEREKKWA-KMFHKWDKVP-ADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMR 429 (827)
Q Consensus 352 ~e~~R~~KW~-kmL~~w~~~~-~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~ 429 (827)
...+|..+|. +|+.+|+.+. .++|++++++|||+++|+.||+.|+|+.... ...............|.++.
T Consensus 16 ~~~~~~~~W~~~il~~w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~-------~~~~y~~ll~~~~~~~~~~~ 88 (334)
T 2qq8_A 16 FQGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNI-------THELFDICLARAKERWRSLS 88 (334)
T ss_dssp CSSCHHHHHHHTTGGGCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCC-------CHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhHHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCcccc-------CHHHHHHHHHHHHHHHHHhc
Confidence 3456789998 5999999876 8999999999999999999999999985321 11111111122223333332
Q ss_pred Hhhh------------cCCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhh
Q psy18019 430 DLAW------------KYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMY 497 (827)
Q Consensus 430 ~~~~------------~~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlv 497 (827)
.... ...+..+||++||.||||++.+|.. .+.+++.|++||.+|+.+||++|||||||+|||+||++
T Consensus 89 ~~~~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~ 167 (334)
T 2qq8_A 89 TGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILN 167 (334)
T ss_dssp ------------------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHH
T ss_pred cccccCcccccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhc
Confidence 2110 0134568999999999999999986 35679999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCc
Q psy18019 498 LSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFK 577 (827)
Q Consensus 498 l~EedAFw~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e 577 (827)
++|++|||||++||++ +...++|.++.+++...+..++.+|+..+|+|++||++.|+.+.+|+++||+|||+++||++
T Consensus 168 ~~E~~aF~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 168 LDTADAFIAFSNLLNK--PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp SCHHHHHHHHHHHHTS--HHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred CCHHHHHHHHHHHHHh--hhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 9999999999999996 23467899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhhhcCCChHHHHHHHH
Q psy18019 578 LTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQ 641 (827)
Q Consensus 578 ~vLRLWD~~l~eG~~~L~~valAIL~~~r~~LL~~d~eeil~~Lq~~l~~~~~~d~d~vI~~l~ 641 (827)
.++||||+||++|..+++++|+|||+.+++.|+++|+++++.+|++++.. ++.+.++..+.
T Consensus 246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~---~d~~~l~~~a~ 306 (334)
T 2qq8_A 246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED---LPAEELFASIA 306 (334)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc---CCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654 67887777654
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=424.83 Aligned_cols=262 Identities=29% Similarity=0.553 Sum_probs=235.5
Q ss_pred HHHHHHhhhcCCCCC---HHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHHHhhh
Q psy18019 357 EKKWAKMFHKWDKVP---ADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAW 433 (827)
Q Consensus 357 ~~KW~kmL~~w~~~~---~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~~~~~ 433 (827)
.++|.+|+++|+.+. +++|++++++|||+.+|+.||+.|+|+... ....+.|..+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~-----------------~~~~~~Y~~l~~--- 64 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDN-----------------QAMLDRYRILIT--- 64 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCC-----------------HHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcc-----------------hhHHHHHHHHHh---
Confidence 578999999997654 689999999999999999999999998643 123456776653
Q ss_pred cCCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhcCHHHHHHHHHHHHhc
Q psy18019 434 KYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSD 513 (827)
Q Consensus 434 ~~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl~EedAFw~l~~Lm~~ 513 (827)
..++..++|++||.||+|++.+|....+.+++.|++||.+|+.+||++|||||||+|||+||++++|++|||||++||.+
T Consensus 65 ~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~ 144 (310)
T 3hzj_A 65 KDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD 144 (310)
T ss_dssp SCCTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34677899999999999999999988788999999999999999999999999999999999999999999999999986
Q ss_pred ccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCchHHHHHHHHHHhCchH
Q psy18019 514 SKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERI 593 (827)
Q Consensus 514 ~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e~vLRLWD~~l~eG~~~ 593 (827)
+.++++|.++++++...+..++.+|+..+|+|++||.+.|+.+.+|+++||+|||+++||++.++||||+||++|.++
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~ 222 (310)
T 3hzj_A 145 --YGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNI 222 (310)
T ss_dssp --SCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTH
T ss_pred --ccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhhhcC--CChHHHHHHH
Q psy18019 594 MTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQ--YTDDATIESL 640 (827)
Q Consensus 594 L~~valAIL~~~r~~LL~~d~eeil~~Lq~~l~~~~~--~d~d~vI~~l 640 (827)
++++|+|||+.+++.|+++|+++++++|++.++..+. .|.+.+++.+
T Consensus 223 l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A 271 (310)
T 3hzj_A 223 IFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQA 271 (310)
T ss_dssp HHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHH
Confidence 9999999999999999999999999999865554422 2345666655
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=2.2e-47 Score=418.06 Aligned_cols=273 Identities=26% Similarity=0.490 Sum_probs=236.4
Q ss_pred HHHHHHHHHhhhcCCC----CCHHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHH
Q psy18019 354 LEREKKWAKMFHKWDK----VPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMR 429 (827)
Q Consensus 354 ~~R~~KW~kmL~~w~~----~~~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~ 429 (827)
.++.++|.++++++++ .+.++|++++++|||+.+|+.||+.|+|+....+.... +.....+.|.++.
T Consensus 27 ~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---------~~~~~~~~Y~~l~ 97 (331)
T 3qye_A 27 KEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---------KQQPKDVPYKELL 97 (331)
T ss_dssp HHHHHHHHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---------SSCCCCCCHHHHT
T ss_pred HHHHHHHHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---------hhhhchHHHHHHH
Confidence 3477899999998765 23899999999999999999999999997532100000 0112345677776
Q ss_pred HhhhcCCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhcCHHHHHHHHHH
Q psy18019 430 DLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSS 509 (827)
Q Consensus 430 ~~~~~~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl~EedAFw~l~~ 509 (827)
+ ..++..++|++||.||+|++.+|....+.+++.|++||.+|+.+||++|||||||+|+|+||++++|++|||||++
T Consensus 98 ~---~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~ 174 (331)
T 3qye_A 98 K---QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKF 174 (331)
T ss_dssp T---SCCTTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred H---hcCCchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4 3456678999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCchHHHHHHHHHHh
Q psy18019 510 LVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILE 589 (827)
Q Consensus 510 Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e~vLRLWD~~l~e 589 (827)
||.+ +.++++|.++++++...+..++.+|+..+|+|++||++.|+.+.+|+++||+|||+++||++.++||||+||++
T Consensus 175 l~~~--~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~ 252 (331)
T 3qye_A 175 LMFD--MGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ 252 (331)
T ss_dssp HHTT--TCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHh--cCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC
Confidence 9986 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHhhhhhhcCCChHHHHHHH
Q psy18019 590 GERIMTAMAYNLLKMHQRQLAKL-SMDDILHFIQVKLEKQFQYTDDATIESL 640 (827)
Q Consensus 590 G~~~L~~valAIL~~~r~~LL~~-d~eeil~~Lq~~l~~~~~~d~d~vI~~l 640 (827)
|.++++++|+|||+.+++.|+++ |+++++.+|++.++..-..+.+.++..+
T Consensus 253 g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A 304 (331)
T 3qye_A 253 GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQV 304 (331)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999966542112334445444
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1.6e-47 Score=421.75 Aligned_cols=284 Identities=17% Similarity=0.347 Sum_probs=240.1
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHH
Q psy18019 348 KDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEE 427 (827)
Q Consensus 348 k~~~~e~~R~~KW~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~ 427 (827)
.....+..|.++|.++++++. .+.++|++++++|||+.+|+.||+.|||+.+.+ ...+........+.|..
T Consensus 17 ~~~~~e~~r~~kw~~~l~~~~-~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~--------~~~~~~~l~~~~~~Y~~ 87 (345)
T 2qfz_A 17 QGSEREASRLDKFKQLLAGPN-TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPAN--------VDRRPATLQRKQKEYFA 87 (345)
T ss_dssp -------CHHHHHHHHHHCSB-CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSB--------GGGHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHHHHH
Confidence 346678889999999999874 569999999999999999999999999986541 12333445667788888
Q ss_pred HHHhhhc------CCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhc---
Q psy18019 428 MRDLAWK------YSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL--- 498 (827)
Q Consensus 428 L~~~~~~------~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl--- 498 (827)
+++.... ..+..+||++||.||+|+ ++|.. ...++.|.+||.+|+.+||++|||||||+|+|+||+++
T Consensus 88 l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~--~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~ 164 (345)
T 2qfz_A 88 FIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE-ALILQ--PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICE 164 (345)
T ss_dssp HHHHC--------CHHHHHHHHHHGGGCSCH-HHHTS--HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGG
T ss_pred HHHHhhcCCCccchHHHHHHHHHhCcccCCc-cccCC--chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhh
Confidence 8765321 224568999999999999 99987 46789999999999999999999999999999999865
Q ss_pred ----------------------CHHHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCC
Q psy18019 499 ----------------------SEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNV 556 (827)
Q Consensus 499 ----------------------~EedAFw~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv 556 (827)
+|++|||||++||++ ++++|.++++++...+..++.+|++.+|+|++||++.|+
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~----~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i 240 (345)
T 2qfz_A 165 YIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG----IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEV 240 (345)
T ss_dssp GCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHT----SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTC
T ss_pred hcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHc----cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 299999999999997 578999999999999999999999999999999999999
Q ss_pred CcccchhHHHHHhcCCCCCCchHHHHHHHHHHhCch---HHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhhhhhcC-C
Q psy18019 557 DTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGER---IMTAMAYNLLKMHQRQLAK-LSMDDILHFIQVKLEKQFQ-Y 631 (827)
Q Consensus 557 ~~~~fa~~WfltLF~~~lp~e~vLRLWD~~l~eG~~---~L~~valAIL~~~r~~LL~-~d~eeil~~Lq~~l~~~~~-~ 631 (827)
.+.+|+++||+|||+++||++.++||||+||++|.. +++++|+|||+.++++||+ .|+++++.+|++++...|. .
T Consensus 241 ~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~ 320 (345)
T 2qfz_A 241 RYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDE 320 (345)
T ss_dssp CHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHH
T ss_pred chhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchh
Confidence 999999999999999999999999999999999986 7899999999999999996 5999999999998876643 2
Q ss_pred ChHHHHHHHHHHHHHH
Q psy18019 632 TDDATIESLQKCLEEL 647 (827)
Q Consensus 632 d~d~vI~~l~~~~~eL 647 (827)
|.+.+|..+.......
T Consensus 321 di~~ll~~A~~l~~~~ 336 (345)
T 2qfz_A 321 DISLLLAEAYRLKFAF 336 (345)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777666555443
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.6e-47 Score=427.63 Aligned_cols=275 Identities=18% Similarity=0.388 Sum_probs=243.0
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHHHhh
Q psy18019 353 ELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLA 432 (827)
Q Consensus 353 e~~R~~KW~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~~~~ 432 (827)
..+|.+||.++|+++...+.++||+++++|||+.+|+.||+.|||+.+.. ...+........+.|..++++.
T Consensus 4 ~~~R~~kw~~lL~~~~~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~--------~~~~~~~l~~~~~~Y~~l~~~~ 75 (396)
T 1fkm_A 4 IIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVN--------TKRQEGFLQRKRKEYRDSLKHT 75 (396)
T ss_dssp HHHHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSB--------GGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999875779999999999999999999999999987552 1233344566788899888753
Q ss_pred h-----cCCCcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhc---------
Q psy18019 433 W-----KYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL--------- 498 (827)
Q Consensus 433 ~-----~~s~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl--------- 498 (827)
. ...+..+||++||.||||++.+|.. +.+++.|.+||.+|+.+||++|||||||+|+|+||+++
T Consensus 76 ~~~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~ 153 (396)
T 1fkm_A 76 FSDQHSRDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQ 153 (396)
T ss_dssp SSSSCSTHHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGG
T ss_pred hhccCcccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccc
Confidence 2 2234568999999999999999987 67899999999999999999999999999999999863
Q ss_pred -------------C-------HHHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCc
Q psy18019 499 -------------S-------EEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDT 558 (827)
Q Consensus 499 -------------~-------EedAFw~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~ 558 (827)
+ |++|||||++||.+ +.++|.++++++...+..++.+|++.+|+|++||++.|+.+
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~----~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~ 229 (396)
T 1fkm_A 154 IDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ----ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEF 229 (396)
T ss_dssp GGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGG----GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCT
T ss_pred cccccccchhhccchhhhhhhHHHHHHHHHHHHHH----HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 3 99999999999997 68999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhcCCCCCCchHHHHHHHHHHhC------------------------------------------------
Q psy18019 559 GIYTLKWFFQCFLDRIPFKLTLRVWDIYILEG------------------------------------------------ 590 (827)
Q Consensus 559 ~~fa~~WfltLF~~~lp~e~vLRLWD~~l~eG------------------------------------------------ 590 (827)
.+|+++||++||+++||++.++||||+||++|
T Consensus 230 ~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 309 (396)
T 1fkm_A 230 IQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTP 309 (396)
T ss_dssp HHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998
Q ss_pred ---------------chHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhhhhc-CCChHHHHHHHH
Q psy18019 591 ---------------ERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQF-QYTDDATIESLQ 641 (827)
Q Consensus 591 ---------------~~~L~~valAIL~~~r~~LL~~d~eeil~~Lq~~l~~~~-~~d~d~vI~~l~ 641 (827)
..+++++|+|||..+|++||++|+++++.+|++++...| ..|.+.++..+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~ 376 (396)
T 1fkm_A 310 NNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAF 376 (396)
T ss_dssp -------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred ccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 268999999999999999999999999999999887654 235567777776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=4.2e-44 Score=386.07 Aligned_cols=267 Identities=16% Similarity=0.259 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHcC---CCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHH
Q psy18019 351 EIELEREKKWAKMFHKWDKVPADKLKRRVYKG---IPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEE 427 (827)
Q Consensus 351 ~~e~~R~~KW~kmL~~w~~~~~~KLk~li~kG---IP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~ 427 (827)
..+..+.+++.+.+++ +..+.++|+++++.| +|+++|+.||+.|||+........ |..
T Consensus 14 ~~~~~k~~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------------~~~ 74 (292)
T 4hl4_A 14 AKRKKKVAEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------------SGK 74 (292)
T ss_dssp HHHHHHHHHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------------CCT
T ss_pred chhHHHHHHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------------hhh
Confidence 3456677788888865 456799999999874 899999999999999976532111 111
Q ss_pred HHHhhhcCCCccccccccccccccccccccc--ccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhhcCHHHHHH
Q psy18019 428 MRDLAWKYSPDIRQIDLDVNRTYREHNMFRD--RYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFW 505 (827)
Q Consensus 428 L~~~~~~~s~~~~qI~~DV~RTfp~~~~F~~--~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlvl~EedAFw 505 (827)
. ....+++.+||++||.||+++++.|.. ..+.+|+.|++||.+|+.+||++|||||||+|||+||++++|++|||
T Consensus 75 ~---~~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~ 151 (292)
T 4hl4_A 75 N---LRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATS 151 (292)
T ss_dssp T---HHHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHH
T ss_pred h---hcccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHH
Confidence 0 123467789999999999999988753 34567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCC-CchHHHHHH
Q psy18019 506 ALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIP-FKLTLRVWD 584 (827)
Q Consensus 506 ~l~~Lm~~~~~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp-~e~vLRLWD 584 (827)
||++||+. .++++|.++++++...+..++.+|+..+|+|++||++.++. .+|+++||+|||++++| ++.++||||
T Consensus 152 ~l~~l~~~---~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD 227 (292)
T 4hl4_A 152 LVEKLSTH---HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYD 227 (292)
T ss_dssp HHHHHHHT---TTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHH---HHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 99999994 57899999999999999999999999999999999999995 69999999999999996 999999999
Q ss_pred HHHHhCchHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHH
Q psy18019 585 IYILEGERIMTAMAYNLLKMHQRQLAKL--SMDDILHFIQVKLEKQFQYTDDATIESLQKCLEE 646 (827)
Q Consensus 585 ~~l~eG~~~L~~valAIL~~~r~~LL~~--d~eeil~~Lq~~l~~~~~~d~d~vI~~l~~~~~e 646 (827)
+||++|..+++++|+||++.++++||++ |++.++.+|++++.. +|.+.++..+...+.+
T Consensus 228 ~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~---~d~~~li~~A~~l~~~ 288 (292)
T 4hl4_A 228 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQD---LPYETLISRAGDLFVQ 288 (292)
T ss_dssp HHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSS---CCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 899999999987743 6889999988887765
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=318.17 Aligned_cols=258 Identities=16% Similarity=0.260 Sum_probs=202.2
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHcC-CCcchhHhhhhhhhCCCCCCCCCCCCchhhHHHHHHHHhHHHHHHHHHhhhcCC
Q psy18019 358 KKWAKMFHKWDKVPADKLKRRVYKG-IPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYS 436 (827)
Q Consensus 358 ~KW~kmL~~w~~~~~~KLk~li~kG-IP~~lR~~VW~~LLgi~~~~~~~e~~~~~~~~~~~~~~~~~~Y~~L~~~~~~~s 436 (827)
+++..+|++ +.++.+||++++++| ||+.+|+.||++|||+.+.+ .+.+.......++.|.++++..
T Consensus 27 ~~~~~ll~~-~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~--------~~~~~~~l~~kr~eY~~l~~~~---- 93 (294)
T 3qwl_A 27 KSLEILLKD-DRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPH--------HESHAKVMMYRKEQYLDVLHAL---- 93 (294)
T ss_dssp HHHHHHTTS-SBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSB--------GGGHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHhcC-CCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCC--------chhHHHHHHHHHHHHHHHHHhh----
Confidence 455667766 677799999999999 99999999999999998762 2223344666788999988763
Q ss_pred CcccccccccccccccccccccccchhHHHHHHHHHHHhhcccccccccccchhhHHHHhh-cCHHHHHHHHHHHHhccc
Q psy18019 437 PDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMY-LSEEEAFWALSSLVSDSK 515 (827)
Q Consensus 437 ~~~~qI~~DV~RTfp~~~~F~~~~~~~q~~L~rIL~ays~~npeiGY~QGM~~Iaa~LLlv-l~EedAFw~l~~Lm~~~~ 515 (827)
+..++|+.+. |.+..|...+...+.. +..++. .+++. ++|||..||++++++ .+|+||||||++||++
T Consensus 94 ~~~r~I~~~t----P~~~vfl~~~~~~~~~---l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-- 162 (294)
T 3qwl_A 94 KVVRFVSDAT----PQAEVYLRMYQLESGK---LPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-- 162 (294)
T ss_dssp HHTTSCCTTS----CHHHHHHHHHHHHHTC---CCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH--
T ss_pred hhhhhhhccC----chHHHHHHHHHccccc---cccccc-CCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH--
Confidence 2345665533 2222232211111000 111121 13343 559999999988864 5899999999999997
Q ss_pred ccccccccCChhHHHHHHHHHHHHHHHhhhhHHHHHhhcCCCcccchhHHHHHhcCCCCCCchHHHHHHHHHHhCchHHH
Q psy18019 516 YSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMT 595 (827)
Q Consensus 516 ~~l~~~f~~~~~~l~~~~~~~~~LL~~~dPeL~~HL~~~gv~~~~fa~~WfltLF~~~lp~e~vLRLWD~~l~eG~~~L~ 595 (827)
++++|.++++++... ++.+|+..+|+|++||++.|+.+.+++.+||++||+++||++.++||||+||++|.++++
T Consensus 163 --l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~ 237 (294)
T 3qwl_A 163 --LNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILV 237 (294)
T ss_dssp --HHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHH
T ss_pred --HHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHH
Confidence 779999999998865 489999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHH
Q psy18019 596 AMAYNLLKMHQRQLAKLSM-DDILHFIQVKLEKQFQYTDDATIESLQKCLEELK 648 (827)
Q Consensus 596 ~valAIL~~~r~~LL~~d~-eeil~~Lq~~l~~~~~~d~d~vI~~l~~~~~eL~ 648 (827)
++|+|||+.+++.|+++++ ++++.+|++++. .+.+.++.++...+.+-.
T Consensus 238 ~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~----~di~~ll~~A~~l~~~~~ 287 (294)
T 3qwl_A 238 FVAVEILLTFKIKVMALNSAEKITKFLENIPQ----DSSDAIVSKAIDLWHKHC 287 (294)
T ss_dssp HHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS----TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc----ccHHHHHHHHHHHHHHcC
Confidence 9999999999999999965 999999998774 357888888887776653
No 8
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=198.84 Aligned_cols=164 Identities=26% Similarity=0.394 Sum_probs=121.5
Q ss_pred hhhhhhhhh--cccc---hhhhHHHhh----------HHHHHhhhhcCCcchhhhhhhhhcccccccccccccchhhHHH
Q psy18019 220 EHNMFRDRY--SVKQ---TQLFNVLAA----------YSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQL 284 (827)
Q Consensus 220 ~~~k~r~~~--gip~---~~vW~~l~~----------y~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~F~~~~~~~q~~L 284 (827)
..+++++.+ |||. +.||..+.. |..+.. ..++..++|++||+||+|++.+|+.+.+.+|+.|
T Consensus 22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~~~~Y~~l~~---~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L 98 (310)
T 3hzj_A 22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILIT---KDSAQESVITRDIHRTFPAHDYFKDTGGDGQESL 98 (310)
T ss_dssp CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHHHHHHHHHTT---SCCTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhHHHHHHHHHh---ccCCcHHHHHHHHHhhCCCchhhcCCCchhHHHH
Confidence 345666665 9999 899976643 444433 3456789999999999999999999989999999
Q ss_pred HHHHHHHhhcccccccccCchhHHHHHHHhcchhhHHHHhhhcccCcccccccccccccchhhhhHHHHHHHHHHHHHhh
Q psy18019 285 FNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMF 364 (827)
Q Consensus 285 ~~vL~ays~~~p~vGY~QGm~~laa~lL~~~~ee~aFw~l~~l~~~~k~smh~~s~q~~~~e~k~~~~e~~R~~KW~kmL 364 (827)
+|||.+||.+||++|||||||++||+||++++|++|||||+++|.+ +.++++...... . -.........++
T Consensus 99 ~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~--~~~~~~~~~~~~--~-----~~~~~~~l~~ll 169 (310)
T 3hzj_A 99 YKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD--YGLRDLYRNNFE--D-----LHCKFYQLERLM 169 (310)
T ss_dssp HHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHT--SCGGGGTHHHHH--H-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhc--ccccccccccHH--H-----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 456665422111 0 011122344455
Q ss_pred hcCCCCCHHHHHH-HHHcCCCcchhHhhhhhhhCCC
Q psy18019 365 HKWDKVPADKLKR-RVYKGIPNSCRGRGWSLLLNLP 399 (827)
Q Consensus 365 ~~w~~~~~~KLk~-li~kGIP~~lR~~VW~~LLgi~ 399 (827)
...+ .+|.+ +...||.+.+=..-|...+-..
T Consensus 170 ~~~~----p~L~~hL~~~~i~~~~~~~~W~ltlF~~ 201 (310)
T 3hzj_A 170 QEQL----PDLHSHFSDLNLEAHMYASQWFLTLFTA 201 (310)
T ss_dssp HHHC----HHHHHHHHHHTCCGGGTSHHHHHHTTTT
T ss_pred HHhC----hHHHHHHHHcCCChHHHHHHHHHHHHhc
Confidence 4422 34444 3445999887666687766543
No 9
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=204.52 Aligned_cols=114 Identities=28% Similarity=0.468 Sum_probs=93.1
Q ss_pred hhhhhhhhhhhh--cccc---hhhhHHHhh---------HHHHHhhhhc-----------------------CCcchhhh
Q psy18019 217 TYREHNMFRDRY--SVKQ---TQLFNVLAA---------YSEMRDLAWK-----------------------YSPDIRQI 259 (827)
Q Consensus 217 ~~~~~~k~r~~~--gip~---~~vW~~l~~---------y~~~~~~~~~-----------------------~~~~~~qI 259 (827)
++...+++|+.+ |||. +.||.++.. |..+.++... ..+..+||
T Consensus 34 ~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I 113 (334)
T 2qq8_A 34 TMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELI 113 (334)
T ss_dssp --CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------CCHHHHH
T ss_pred hccChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHH
Confidence 344456777766 9998 999977542 4444432210 14567899
Q ss_pred hhhhhcccccccccccccchhhHHHHHHHHHHhhcccccccccCchhHHHHHHHhcchhhHHHHhhhcccCc
Q psy18019 260 DLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDS 331 (827)
Q Consensus 260 ~~Dv~RT~~~~~~F~~~~~~~q~~L~~vL~ays~~~p~vGY~QGm~~laa~lL~~~~ee~aFw~l~~l~~~~ 331 (827)
++||+||+|++.+|+. .+.+++.|+|||.+||++||++|||||||+|||+||++++|++|||||+++|++.
T Consensus 114 ~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~ 184 (334)
T 2qq8_A 114 KLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKP 184 (334)
T ss_dssp HHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSH
T ss_pred HHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999999999999987 4578999999999999999999999999999999999999999999999999863
No 10
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.79 E-value=2.4e-19 Score=195.95 Aligned_cols=168 Identities=25% Similarity=0.404 Sum_probs=119.9
Q ss_pred hhhhhhhhh--cccc---hhhhHHHhhHHHHHh---------------hhhcCCcchhhhhhhhhcccccccccccccch
Q psy18019 220 EHNMFRDRY--SVKQ---TQLFNVLAAYSEMRD---------------LAWKYSPDIRQIDLDVNRTYREHNMFRDRYSV 279 (827)
Q Consensus 220 ~~~k~r~~~--gip~---~~vW~~l~~y~~~~~---------------~~~~~~~~~~qI~~Dv~RT~~~~~~F~~~~~~ 279 (827)
..+++++.+ |||. +.||.++..+..... ..+...+..++|++||+||+|++.+|+.+.+.
T Consensus 48 ~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~ 127 (331)
T 3qye_A 48 DMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGA 127 (331)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSCCTTHHHHHHHHTTSSTTSTTTCSTTCH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhcCCchhHHHHhhcccCCCchhhcCCCcc
Confidence 346676666 9999 999987765433221 11123456789999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccccccCchhHHHHHHHhcchhhHHHHhhhcccCcccccccccccccchhhhhHHHHHHHHHH
Q psy18019 280 KQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELEREKK 359 (827)
Q Consensus 280 ~q~~L~~vL~ays~~~p~vGY~QGm~~laa~lL~~~~ee~aFw~l~~l~~~~k~smh~~s~q~~~~e~k~~~~e~~R~~K 359 (827)
+++.|++||.+||.+||++|||||||++||+||++++|++|||||+++|.+ +.++++.......- ......
T Consensus 128 ~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~--~~~~~~~~~~~~~~-------~~~~~~ 198 (331)
T 3qye_A 128 GQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFD--MGLRKQYRPDMIIL-------QIQMYQ 198 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTT--TCGGGGGSTTCHHH-------HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCchhcCCCChHHH-------HHHHHH
Confidence 999999999999999999999999999999999999999999999999986 34555442221110 011122
Q ss_pred HHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCC
Q psy18019 360 WAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLP 399 (827)
Q Consensus 360 W~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~ 399 (827)
...++...+ ++-.+.+...||.+.+=..-|...+-..
T Consensus 199 l~~ll~~~~---p~L~~hL~~~~i~~~~~~~~W~l~lF~~ 235 (331)
T 3qye_A 199 LSRLLHDYH---RDLYNHLEEHEIGPSLYAAPWFLTMFAS 235 (331)
T ss_dssp HHHHHHHHC---HHHHHHHHHTTCCGGGTSHHHHHSTTTT
T ss_pred HHHHHHHHH---HHHHHHHHHcCCChHHHHHHHHHHHhhh
Confidence 334444322 3333334455998877666677666543
No 11
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.73 E-value=8.9e-18 Score=188.25 Aligned_cols=162 Identities=17% Similarity=0.327 Sum_probs=114.8
Q ss_pred hhhhhhhh--cccc---hhhhHHHhh-------------------HHHHHhhh-----hcCCcchhhhhhhhhccccccc
Q psy18019 221 HNMFRDRY--SVKQ---TQLFNVLAA-------------------YSEMRDLA-----WKYSPDIRQIDLDVNRTYREHN 271 (827)
Q Consensus 221 ~~k~r~~~--gip~---~~vW~~l~~-------------------y~~~~~~~-----~~~~~~~~qI~~Dv~RT~~~~~ 271 (827)
.+++|+.+ |||. +.||.+++. |..++++. ....+..+||++||+||+|++.
T Consensus 23 ~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~~ 102 (396)
T 1fkm_A 23 QQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIP 102 (396)
T ss_dssp HHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTSG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCcc
Confidence 34555555 9998 899976532 55665542 2345678899999999999999
Q ss_pred ccccccchhhHHHHHHHHHHhhcccccccccCchhHHHHHHHhc----------------------c-------hhhHHH
Q psy18019 272 MFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL----------------------S-------EEEAFW 322 (827)
Q Consensus 272 ~F~~~~~~~q~~L~~vL~ays~~~p~vGY~QGm~~laa~lL~~~----------------------~-------ee~aFw 322 (827)
+|+.. .+|+.|+|||.+||.+||++|||||||+|+||||+++ + |++|||
T Consensus 103 ~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~ 180 (396)
T 1fkm_A 103 LYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFW 180 (396)
T ss_dssp GGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHH
T ss_pred cccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHH
Confidence 99975 7899999999999999999999999999999999864 2 788999
Q ss_pred HhhhcccCcccccccccccc-cchhhhhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCC
Q psy18019 323 ALSSLVSDSKYSMHESSAQK-DGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLP 399 (827)
Q Consensus 323 ~l~~l~~~~k~smh~~s~q~-~~~e~k~~~~e~~R~~KW~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~ 399 (827)
||+++|++ +++..... .+.. ........++...+ ++-.+.+-..||.+.+=..-|..+|-..
T Consensus 181 ~f~~lm~~----~~~~f~~~~~~i~--------~~~~~l~~LL~~~d---P~L~~hL~~~~i~~~~f~~rW~l~LF~~ 243 (396)
T 1fkm_A 181 CLTKLLEQ----ITDNYIHGQPGIL--------RQVKNLSQLVKRID---ADLYNHFQNEHVEFIQFAFRWMNCLLMR 243 (396)
T ss_dssp HHHHHHGG----GGGGSSTTCHHHH--------HHHHHHHHHHHHHC---HHHHHHHHHTTCCTHHHHHHHHHTTTGG
T ss_pred HHHHHHHH----HHHHHhhcHHHHH--------HHHHHHHHHHHHHH---HHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 99999986 33333211 1111 12233444554422 3333333445998887777787777643
No 12
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.71 E-value=2e-18 Score=185.81 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=84.7
Q ss_pred ccc---hhhhHHHhhHHHHHh------hhhcCCcchhhhhhhhhccccccccccc--ccchhhHHHHHHHHHHhhccccc
Q psy18019 230 VKQ---TQLFNVLAAYSEMRD------LAWKYSPDIRQIDLDVNRTYREHNMFRD--RYSVKQTQLFNVLAAYSVYNLEI 298 (827)
Q Consensus 230 ip~---~~vW~~l~~y~~~~~------~~~~~~~~~~qI~~Dv~RT~~~~~~F~~--~~~~~q~~L~~vL~ays~~~p~v 298 (827)
+|. +.||.+++.+..... .....++..+||++||+||+|++..|.. ..+.+|+.|+|||.+|+++||++
T Consensus 48 ~p~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~v 127 (292)
T 4hl4_A 48 LTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQL 127 (292)
T ss_dssp CCHHHHHHHHHHHTTCCSCSCCSCCCTTHHHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CChhHHHHHHHHHhCCCcccCCCchhhhhcccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 565 899988765322110 1123477889999999999999999863 34678999999999999999999
Q ss_pred ccccCchhHHHHHHHhcchhhHHHHhhhcccC
Q psy18019 299 GYCQGMSQIAAVLLMYLSEEEAFWALSSLVSD 330 (827)
Q Consensus 299 GY~QGm~~laa~lL~~~~ee~aFw~l~~l~~~ 330 (827)
|||||||+|||+||++++|++|||||+++|.+
T Consensus 128 gY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~ 159 (292)
T 4hl4_A 128 HYYQGYHDIVVTFLLVVGERLATSLVEKLSTH 159 (292)
T ss_dssp CCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999985
No 13
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.70 E-value=1.6e-17 Score=182.73 Aligned_cols=160 Identities=14% Similarity=0.273 Sum_probs=111.9
Q ss_pred hhhhhhh--cccc---hhhhHHHhh-------------------HHHHHhhhh------cCCcchhhhhhhhhccccccc
Q psy18019 222 NMFRDRY--SVKQ---TQLFNVLAA-------------------YSEMRDLAW------KYSPDIRQIDLDVNRTYREHN 271 (827)
Q Consensus 222 ~k~r~~~--gip~---~~vW~~l~~-------------------y~~~~~~~~------~~~~~~~qI~~Dv~RT~~~~~ 271 (827)
+++|+.+ |||. +.||.+++. |..++++.. ...+..+||++||+||+|+ .
T Consensus 41 ~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~-~ 119 (345)
T 2qfz_A 41 EELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE-A 119 (345)
T ss_dssp HHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc-c
Confidence 4555555 9998 899976543 555554431 1345788999999999999 9
Q ss_pred ccccccchhhHHHHHHHHHHhhcccccccccCchhHHHHHHHhcc-------------------------hhhHHHHhhh
Q psy18019 272 MFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLS-------------------------EEEAFWALSS 326 (827)
Q Consensus 272 ~F~~~~~~~q~~L~~vL~ays~~~p~vGY~QGm~~laa~lL~~~~-------------------------ee~aFw~l~~ 326 (827)
+|+.+ .+|+.|.|||.+||.+||++|||||||+||||||+++. |++|||||+.
T Consensus 120 ~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~ 197 (345)
T 2qfz_A 120 LILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 197 (345)
T ss_dssp HHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99986 67899999999999999999999999999999998762 7889999999
Q ss_pred cccCccccccccc-ccccchhhhhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHcCCCcchhHhhhhhhhCCC
Q psy18019 327 LVSDSKYSMHESS-AQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLP 399 (827)
Q Consensus 327 l~~~~k~smh~~s-~q~~~~e~k~~~~e~~R~~KW~kmL~~w~~~~~~KLk~li~kGIP~~lR~~VW~~LLgi~ 399 (827)
+|++- ++.. ....+.. ........++...+ ++-.+.+...||.+.+=..=|...|-..
T Consensus 198 lm~~~----~~~y~~~~~~i~--------~~~~~l~~ll~~~d---P~L~~hL~~~~i~~~~f~~~W~~~lF~~ 256 (345)
T 2qfz_A 198 LLDGI----QDNYTFAQPGIQ--------MKVKMLEELVSRID---EQVHRHLDQHEVRYLQFAFRWMNNLLMR 256 (345)
T ss_dssp HHHTS----GGGSSTTCHHHH--------HHHHHHHHHHHHHC---HHHHHHHHHTTCCHHHHHHHHHHTTTTT
T ss_pred HHHcc----ccccccCcHHHH--------HHHHHHHHHHHHHH---HHHHHHHHHcCCchhhHHHHHHHHHHcc
Confidence 99873 2222 1111111 11233444554422 3333333445998887677787777643
No 14
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=97.97 E-value=1.8e-06 Score=92.83 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=60.8
Q ss_pred hhhhhhhhhhh--c-ccc---hhhhHHHhh-------------------HHHHHhhhhcCCcchhhhhhhhhcccccccc
Q psy18019 218 YREHNMFRDRY--S-VKQ---TQLFNVLAA-------------------YSEMRDLAWKYSPDIRQIDLDVNRTYREHNM 272 (827)
Q Consensus 218 ~~~~~k~r~~~--g-ip~---~~vW~~l~~-------------------y~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~ 272 (827)
.-..+|+|... | ||+ +.||.+|+. |.+++++ .+..++|+.+.++ +..
T Consensus 37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~----~~~~r~I~~~tP~----~~v 108 (294)
T 3qwl_A 37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA----LKVVRFVSDATPQ----AEV 108 (294)
T ss_dssp BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH----HHHTTSCCTTSCH----HHH
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh----hhhhhhhhccCch----HHH
Confidence 34556666665 7 999 899988754 4444443 2445566654443 333
Q ss_pred cccccchhhHHHHHHHHHHhhcccccccccCchhHHHHHHHh-cchhhHHHHhhhcccC
Q psy18019 273 FRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMY-LSEEEAFWALSSLVSD 330 (827)
Q Consensus 273 F~~~~~~~q~~L~~vL~ays~~~p~vGY~QGm~~laa~lL~~-~~ee~aFw~l~~l~~~ 330 (827)
|...+...+.. +..+|.. +++. ++|||+.+|+++|++ .+|++|||||+++|++
T Consensus 109 fl~~~~~~~~~---l~~~~~~-~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~ 162 (294)
T 3qwl_A 109 YLRMYQLESGK---LPRSPSF-PLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ 162 (294)
T ss_dssp HHHHHHHHHTC---CCSSTTS-CCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHccccc---ccccccC-Cccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 43332111110 1112322 3444 459999999999875 4778899999999997
Done!