RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18019
(827 letters)
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identification of a
TBC domain in GYP6_YEAST and GYP7_YEAST, which are
GTPase activator proteins of yeast Ypt6 and Ypt7,
implies that these domains are GTPase activator proteins
of Rab-like small GTPases.
Length = 206
Score = 186 bits (473), Expect = 3e-54
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 22/226 (9%)
Query: 385 NSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDL 444
+S RG W LLL N R + ++ + + SPD QI+
Sbjct: 1 DSLRGEVWKLLLG----------NLSESKQRDSVSQYSKLLKL------EDSPDEEQIEK 44
Query: 445 DVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLM-YLSEEEA 503
DV RT+ H F++ Q QL +L AYS+YN ++GYCQGM+ IAA LL+ L EEEA
Sbjct: 45 DVPRTFPHHFFFKNGE--GQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEA 102
Query: 504 FWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTL 563
FW SL+ +Y + FF+P FP L R ++++ K P+L KHL K +D ++
Sbjct: 103 FWCFVSLL---EYLLRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFAS 159
Query: 564 KWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQL 609
KWF F +P + LR+WD+++ G+ + +A +LK +++L
Sbjct: 160 KWFLTLFARELPLETVLRLWDLFLEGGKFFLFRVALAILKRFRKEL 205
Score = 98.6 bits (246), Expect = 2e-23
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 242 YSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYC 301
+ L + SPD QI+ DV RT+ H F++ Q QL +L AYS+YN ++GYC
Sbjct: 25 SQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKNGE--GQQQLRRILKAYSIYNPDVGYC 82
Query: 302 QGMSQIAAVLLM-YLSEEEAFWALSSLV 328
QGM+ IAA LL+ L EEEAFW SL+
Sbjct: 83 QGMNFIAAPLLLVVLDEEEAFWCFVSLL 110
Score = 59.3 bits (144), Expect = 6e-10
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 83 FFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFL 133
FF+P FP L R ++++ K P+L KHL K +D ++ KWF F
Sbjct: 117 FFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFA 167
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
Rab-GAPs. Widespread domain present in Gyp6 and Gyp7,
thereby giving rise to the notion that it performs a
GTP-activator activity on Rab-like GTPases.
Length = 216
Score = 183 bits (467), Expect = 3e-53
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 379 VYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPD 438
V KG+P S RG W LLLN S + Y +++ A
Sbjct: 1 VRKGVPPSLRGVVWKLLLNAQP-------MDTS-ADKDLYSR------LLKETAPDDKSI 46
Query: 439 IRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL 498
+ QI+ D+ RT+ EH+ F+D+ Q L VL AY++YN E+GYCQGM+ +AA LL+ +
Sbjct: 47 VHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106
Query: 499 -SEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVD 557
EE+AFW L L+ F++P L D+++ ++ P L KHL +
Sbjct: 107 EDEEDAFWCLVKLMERYG---PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGIT 163
Query: 558 TGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQL 609
+Y L+WF F +P ++ LR+WD+ EG + +A LLK+H+ L
Sbjct: 164 PSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVL 215
Score = 103 bits (260), Expect = 4e-25
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 242 YSEMRDLAWKYSPDIR-QIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGY 300
YS + I QI+ D+ RT+ EH+ F+D+ Q L VL AY++YN E+GY
Sbjct: 32 YSRLLKETAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGY 91
Query: 301 CQGMSQIAAVLLMYL-SEEEAFWALSSLVSDSKYSMH 336
CQGM+ +AA LL+ + EE+AFW L L+ + +
Sbjct: 92 CQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFY 128
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 83 FFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLD 134
F++P L D+++ ++ P L KHL + +Y L+WF F
Sbjct: 127 FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFAR 178
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 148 bits (375), Expect = 7e-38
Identities = 93/335 (27%), Positives = 149/335 (44%), Gaps = 36/335 (10%)
Query: 329 SDSKYSMHESSAQK-----DGLEKKDKEIELEREKKWAKMF--HKWDKVPAD--KLKRRV 379
S S S E + + +K + EL +K W + +P KL+ +
Sbjct: 150 SSSLNSNPELNKEINELSLKEEPQKLRYYELAADKLWISYLDPNPLSFLPVQLSKLRELI 209
Query: 380 YKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDI 439
KGIPN RG W LL + D + +R R+ + I
Sbjct: 210 RKGIPNELRGDVWEFLLGIGFDLDKNPGL------YERLLNLHREAKI------PTQEII 257
Query: 440 RQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYL- 498
QI+ D++RT+ ++++F+ S++ L VL AYS+YN E+GY QGM+ +AA LL+ L
Sbjct: 258 SQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLE 317
Query: 499 SEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDT 558
SEE+AFW L L+ Y + G+F+ L R + D ++ + P+L +HL + V
Sbjct: 318 SEEQAFWCLVKLL--KNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVL 375
Query: 559 GIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGER--------IMTAMAYNLLKM-HQRQL 609
++ +WF F+ P + LR+WD LEG I+ + LLK+ L
Sbjct: 376 LMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELL 435
Query: 610 AKLSMDDILHFIQ---VKLEKQFQYTDDATIESLQ 641
L LH + + K TD + ++
Sbjct: 436 DLLLKQLFLHSGKEAWSSILKFRHGTDRDILLFIE 470
Score = 81.8 bits (202), Expect = 4e-16
Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 251 KYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAV 310
I QI+ D++RT+ ++++F+ S++ L VL AYS+YN E+GY QGM+ +AA
Sbjct: 252 PTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAP 311
Query: 311 LLMYL-SEEEAFWALSSL 327
LL+ L SEE+AFW L L
Sbjct: 312 LLLVLESEEQAFWCLVKL 329
Score = 35.9 bits (83), Expect = 0.083
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 83 FFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCF 132
+F+ L R + D ++ + P+L +HL + V ++ +WF F
Sbjct: 338 YFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLF 387
>gnl|CDD|225357 COG2766, PrkA, Putative Ser protein kinase [Signal transduction
mechanisms].
Length = 649
Score = 32.0 bits (73), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 636 TIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFD 687
E L++ +E + LD G+ SP +SPL +F PD A E ++
Sbjct: 119 LAERLKRLMERVPIYDLDANGKGSPVH--ESPLHLFPPDHLADDLEHEYGIR 168
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase. tldD and
pmbA were found to suppress mutations in letD and
inhibitor of DNA gyrase. Therefore it has been
hypothesised that the TldD and PmbA proteins modulate
the activity of DNA gyrase. It has also been suggested
that PmbA may be involved in secretion.
Length = 289
Score = 31.5 bits (72), Expect = 1.5
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 631 YTDDATIESLQKCLEE----LKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDF 686
T D + E+L+K +E K + D AG P P+ LP P ++ PD S E+K +
Sbjct: 47 STSDLSEEALKKAVERALALAKLSPEDPAGLPDPSPLPPVP-DLYDPDPADLSLEEKIEL 105
Query: 687 DENIEKR 693
+ +E+
Sbjct: 106 LKELEEA 112
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 31.1 bits (70), Expect = 3.1
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 695 TIALEPQPSPAELPKSPLGVFKPDAH--AASFEQ-------KIGRRSSEFSSVEKATQET 745
+ Q +P L KS G AH AA F+Q K+ R + F K +
Sbjct: 522 FSSHAAQRAPKRLGKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKK 581
Query: 746 VITRRDTAVALAAL 759
+ V +A L
Sbjct: 582 EPGLFEPDVVMAQL 595
>gnl|CDD|235305 PRK04527, PRK04527, argininosuccinate synthase; Provisional.
Length = 400
Score = 30.6 bits (69), Expect = 3.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 9 RAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYG 43
RA ++ + I E L +G EI WE P G
Sbjct: 169 RAKQKAYTINENLLGVTMSGGEIDRWEAPGEGARG 203
Score = 30.6 bits (69), Expect = 3.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 154 RAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYG 188
RA ++ + I E L +G EI WE P G
Sbjct: 169 RAKQKAYTINENLLGVTMSGGEIDRWEAPGEGARG 203
>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
gtfA in Streptococcus gordonii, where it plays a role in
the O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 372
Score = 30.3 bits (69), Expect = 4.1
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 82 SFFIP-GFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYE 140
F+ P G ++++D L L+ D + F FLD
Sbjct: 42 RFYNPDGSVA---LEKYYDNDKGGLELTLIILLNYQGEDYFFNNEEELFAFFLDELNKDT 98
Query: 141 NGHI 144
+
Sbjct: 99 KPDV 102
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 29.8 bits (67), Expect = 8.2
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 699 EPQPSPAELPKSPLGVFKPDAHAASFEQKIGRRSSEFSSVEKATQETVITRRDTAVALAA 758
+ SP+ P SP P + AS SS S +T + + R AV+
Sbjct: 291 PRERSPSPSPSSPGSGPAPSSPRAS-----SSSSSSRESSSSSTSSSSESSRGAAVSPGP 345
Query: 759 LADRNSSIGTDASKYTPPSRRNSAR 783
R+ S P S R R
Sbjct: 346 SPSRSPSPSRPPPPADPSSPRKRPR 370
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,668,037
Number of extensions: 4387702
Number of successful extensions: 4269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4254
Number of HSP's successfully gapped: 34
Length of query: 827
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 722
Effective length of database: 6,280,432
Effective search space: 4534471904
Effective search space used: 4534471904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)