RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18019
(827 letters)
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 313 bits (805), Expect = e-101
Identities = 80/302 (26%), Positives = 133/302 (44%), Gaps = 25/302 (8%)
Query: 355 EREKKWAKMFHKWDKVPA---DKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRS 411
+ W ++ KW L V G+P + R W LL
Sbjct: 3 KILYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGC------------- 49
Query: 412 MDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVL 471
++ + R L K S I D++RT+ H+ F+D Q L+ +
Sbjct: 50 -------HDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKIC 102
Query: 472 AAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLR 531
AYSVY+ +IGYCQG S +AAVLL+++ EE+AF L ++ D Y + + F L
Sbjct: 103 KAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD--YGLRDLYRNNFEDLHC 160
Query: 532 YQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGE 591
+++M + LP L H N++ +Y +WF F + P + + D+ + EG
Sbjct: 161 KFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220
Query: 592 RIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNK 651
I+ +A LLK + L + + L F +V+L K+++ ++A Q C ++ K
Sbjct: 221 NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKK 280
Query: 652 LD 653
L
Sbjct: 281 LK 282
Score = 138 bits (349), Expect = 3e-36
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 242 YSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYC 301
R L K S I D++RT+ H+ F+D Q L+ + AYSVY+ +IGYC
Sbjct: 56 LDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYC 115
Query: 302 QGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHE 337
QG S +AAVLL+++ EE+AF L ++ D Y + +
Sbjct: 116 QGQSFLAAVLLLHMPEEQAFCVLVKIMYD--YGLRD 149
Score = 69.7 bits (171), Expect = 5e-13
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 82 SFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDR 135
+ F L +++M + LP L H N++ +Y +WF F +
Sbjct: 149 DLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAK 202
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 312 bits (801), Expect = e-100
Identities = 75/315 (23%), Positives = 137/315 (43%), Gaps = 21/315 (6%)
Query: 347 KKDKEIELEREKKWAKMFHKWD----KVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPG 402
++ E W KM K +K+ V +G+P RG W L
Sbjct: 20 EEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAE----- 74
Query: 403 DGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSV 462
+ + Y+E L + + I +D+ RT+ H F +
Sbjct: 75 ----QFHLKHQFPSKQQPKDVPYKE---LLKQLTSQQHAILIDLGRTFPTHPYFSAQLGA 127
Query: 463 KQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGFF 522
Q L+N+L AYS+ + E+GYCQG+S +A +LL+++SEEEAF L L+ D + +
Sbjct: 128 GQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFD--MGLRKQY 185
Query: 523 IPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRV 582
P L +++ + L HL+++ + +Y WF F + P RV
Sbjct: 186 RPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARV 245
Query: 583 WDIYILEGERIMTAMAYNLLKMHQRQLAKL-SMDDILHFIQVKLEKQFQYTDDATIESLQ 641
+D+ L+G ++ +A +LL H+ + + +++ I+ FI+ L + TI +
Sbjct: 246 FDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVF 305
Query: 642 --KCLEELKRNKLDY 654
++L+ +++Y
Sbjct: 306 EMDIAKQLQAYEVEY 320
Score = 138 bits (349), Expect = 4e-36
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 243 SEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQ 302
++L + + I +D+ RT+ H F + Q L+N+L AYS+ + E+GYCQ
Sbjct: 91 VPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQ 150
Query: 303 GMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHE 337
G+S +A +LL+++SEEEAF L L+ D + +
Sbjct: 151 GLSFVAGILLLHMSEEEAFKMLKFLMFD--MGLRK 183
Score = 68.7 bits (168), Expect = 2e-12
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 76 KHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDR 135
+ + P L +++ + L HL+++ + +Y WF F +
Sbjct: 177 FDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQ 236
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 300 bits (769), Expect = 4e-95
Identities = 85/336 (25%), Positives = 146/336 (43%), Gaps = 12/336 (3%)
Query: 335 MHESSAQKDGLEKKDKEIELEREKKW-AKMFHKWDKV-PADKLKRRVYKGIPNSCRGRGW 392
MH G +++ + W ++ W+ + + K++ ++GIP S RG+ W
Sbjct: 1 MHHHHHHSSG--RENLYFQGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVW 58
Query: 393 SLLLN-----LPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVN 447
SL + + D + + S + E+ A + I LD++
Sbjct: 59 SLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDIS 118
Query: 448 RTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWAL 507
RT+ +F + L ++L AY+ Y ++GY QGMS IAAVL++ L +AF A
Sbjct: 119 RTFPNLCIF-QQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAF 177
Query: 508 SSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFF 567
S+L++ K FF +L Y + + LPKL H KNN+ IY + W F
Sbjct: 178 SNLLN--KPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIF 235
Query: 568 QCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEK 627
+ +P L R+WD++ +GE + A +LK+ + L K+ + F+ E
Sbjct: 236 TLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED 295
Query: 628 QFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAEL 663
A+I ++Q K ++ A Q E+
Sbjct: 296 LPAEELFASIATIQMQSRNKKWAQVLTALQKDSREM 331
Score = 123 bits (311), Expect = 5e-31
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 242 YSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYC 301
+ A + I LD++RT+ +F + L ++L AY+ Y ++GY
Sbjct: 96 NEDAGFSAADREASLELIKLDISRTFPNLCIF-QQGGPYHDMLHSILGAYTCYRPDVGYV 154
Query: 302 QGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHE 337
QGMS IAAVL++ L +AF A S+L+ +K
Sbjct: 155 QGMSFIAAVLILNLDTADAFIAFSNLL--NKPCQMA 188
Score = 68.7 bits (168), Expect = 2e-12
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 76 KHLLNSSFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDR 135
+FF +L Y + + LPKL H KNN+ IY + W F +
Sbjct: 182 NKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKS 241
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 218 bits (556), Expect = 2e-64
Identities = 64/354 (18%), Positives = 130/354 (36%), Gaps = 56/354 (15%)
Query: 336 HESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLL 395
H S+ ++ L + E E R K+ ++ + ++L+R + GIP R W LL
Sbjct: 5 HHHSSGRENLYFQGSEREASRLDKFKQLLAGPN-TDLEELRRLSWSGIPKPVRPMTWKLL 63
Query: 396 LNLPDPGDGDESNPRSMDMRQRYEESTRK-YEEMRDLAWKYSPD------IRQIDLDVNR 448
P ++D R + +K Y + + D RQI +D+ R
Sbjct: 64 SG---------YLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPR 114
Query: 449 TYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLS--------- 499
E + + + +L +++ + GY QG++ + +
Sbjct: 115 MSPEALILQPKV---TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171
Query: 500 ----------------EEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKF 543
E + +W +S L+ + + P + + ++++S+
Sbjct: 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDG----IQDNYTFAQPGIQMKVKMLEELVSRI 227
Query: 544 LPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMT----AMAY 599
++ +HLD++ V + +W + +P + T+R+WD Y E + A
Sbjct: 228 DEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAA 287
Query: 600 NLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLD 653
L++ + L + ++L F+Q + DD I L LK D
Sbjct: 288 FLVRWRKEILEEKDFQELLLFLQNLPTAHW---DDEDISLLLAEAYRLKFAFAD 338
Score = 73.4 bits (180), Expect = 4e-14
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 36/135 (26%)
Query: 242 YSEMRDLAWKYSPD------IRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYN 295
Y + + D RQI +D+ R E + + + +L +++ +
Sbjct: 85 YFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQPKV---TEIFERILFIWAIRH 141
Query: 296 LEIGYCQGMSQIAAVLLMYLS-------------------------EEEAFWALSSLVSD 330
GY QG++ + + E + +W +S L+
Sbjct: 142 PASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG 201
Query: 331 SK--YSMHESSAQKD 343
+ Y+ + Q
Sbjct: 202 IQDNYTFAQPGIQMK 216
Score = 53.0 bits (127), Expect = 2e-07
Identities = 7/54 (12%), Positives = 23/54 (42%)
Query: 82 SFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDR 135
+ P + + ++++S+ ++ +HLD++ V + +W +
Sbjct: 204 DNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMRE 257
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 195 bits (497), Expect = 2e-55
Identities = 58/368 (15%), Positives = 119/368 (32%), Gaps = 41/368 (11%)
Query: 352 IELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRS 411
++R K+ + + L++ + GIP R W LL+ +
Sbjct: 3 SIIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPV---NTKRQEG 59
Query: 412 MDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVL 471
R+R E D + P QI++D+ RT +++ + Q L +L
Sbjct: 60 FLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV--QNSLQRIL 117
Query: 472 AAYSVYNLEIGYCQGMSQIAAVLLMYLS-----------------------------EEE 502
+++ + GY QG++ + E +
Sbjct: 118 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 177
Query: 503 AFWALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYT 562
FW L+ L+ + +I G P +LR ++ +++ + L H +V+ +
Sbjct: 178 TFWCLTKLLEQ----ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFA 233
Query: 563 LKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQ 622
+W + +R+WD Y+ E + +T+ + + + + F
Sbjct: 234 FRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYS-MSSNDIKPPVTPTEPRVASF-- 290
Query: 623 VKLEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQ 682
V K FQ A E + + + L + F++
Sbjct: 291 VTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQE 350
Query: 683 KFDFDENI 690
F +N
Sbjct: 351 TITFLQNP 358
Score = 75.0 bits (184), Expect = 2e-14
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 9/135 (6%)
Query: 212 LDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHN 271
L VN +E + R R + + D + P QI++D+ RT
Sbjct: 50 LPVNTKRQEGFLQRKRKEYRDSL-------KHTFSDQHSRDIPTWHQIEIDIPRTNPHIP 102
Query: 272 MFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDS 331
+++ + Q L +L +++ + GY QG++ + E + V
Sbjct: 103 LYQFKSV--QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIK 160
Query: 332 KYSMHESSAQKDGLE 346
S + Q LE
Sbjct: 161 DPSTYMVDEQITDLE 175
Score = 48.9 bits (116), Expect = 5e-06
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 82 SFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCF 132
+I G P +LR ++ +++ + L H +V+ + +W
Sbjct: 191 DNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLL 241
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 149 bits (376), Expect = 3e-40
Identities = 46/270 (17%), Positives = 92/270 (34%), Gaps = 31/270 (11%)
Query: 356 REKKWAKMFHKWDKVPADKLKRRVY-KGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDM 414
EKK ++ K D++ +KL +P+ R W +LL + P +
Sbjct: 24 EEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGI---------LPPHHES 74
Query: 415 RQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAY 474
+ + E+ D+ + + + T + R QL +
Sbjct: 75 HAKVMM--YRKEQYLDVLHAL----KVVRFVSDATPQAEVYLR------MYQLESGKLPR 122
Query: 475 SVYNLEIGYCQGMSQIAAVLLM-YLSEEEAFWALSSLVSDSKYSMHGFFIPGFPKLLRYQ 533
S + IA + + +W V ++ + P+L +
Sbjct: 123 SPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFV----NQLNTKYRDSLPQLPKAF 178
Query: 534 EHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERI 593
E ++ +L HL + + WF +CF +P RVWD + +I
Sbjct: 179 EQ---YLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKI 235
Query: 594 MTAMAYNLLKMHQRQLAKL-SMDDILHFIQ 622
+ +A +L + ++ L S + I F++
Sbjct: 236 LVFVAVEILLTFKIKVMALNSAEKITKFLE 265
Score = 48.9 bits (116), Expect = 3e-06
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 82 SFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDR 135
+ + P+L + E ++ +L HL + + WF +CF
Sbjct: 165 TKYRDSLPQLPKAFEQ---YLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGC 215
Score = 33.9 bits (77), Expect = 0.18
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 9/100 (9%)
Query: 235 LFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYS-----VKQTQLFNVLA 289
L +L + E Y ++ LDV + D ++ QL +
Sbjct: 64 LLGILPPHHESHAKVMMYR---KEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKL 120
Query: 290 AYSVYNLEIGYCQGMSQIAAVLLM-YLSEEEAFWALSSLV 328
S + IA + + +W V
Sbjct: 121 PRSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFV 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 9e-15
Identities = 94/673 (13%), Positives = 190/673 (28%), Gaps = 206/673 (30%)
Query: 95 QEHHDKIMSKFLPKLKKHLDKNNVD---TGIYTLKWFFQCFLDRHYGYENGHI-NMNSEE 150
Q + I+S F + D +V I + + E HI
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-------------EIDHIIMSKDAV 61
Query: 151 --------LLLRAAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLAWK 202
LL EE +V+++++ + + F+ K
Sbjct: 62 SGTLRLFWTLLSKQEE---MVQKFVEEVL---------RIN---------YKFLMS-PIK 99
Query: 203 YSPDIRQIDLD-----VNRTYREHNMFRDRYSVKQTQLFNVL-AAYSEMRDLAWKYSPDI 256
+ +R Y ++ +F Y+V + Q + L A E+R
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKN------ 152
Query: 257 RQIDLDVNRTYREHNMF------------RDRYSVKQTQLFNVLAAYSVYNLEIGYCQGM 304
+ + + Y V+ F ++ L + C
Sbjct: 153 --VLI--------DGVLGSGKTWVALDVCLS-YKVQCKMDFK------IFWLNLKNCN-- 193
Query: 305 SQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLEKKDKEIELER---EKKWA 361
VL M L + D ++ + L + EL R K +
Sbjct: 194 -SPETVLEM-------LQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 362 KMF----HKWDKVPADKLKRRVYKGIPNSCRGRGWSLLL-----NLPDPGDGDESNPRSM 412
+ + + + SC+ +LL + D + S+
Sbjct: 245 NCLLVLLNVQNA--------KAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISL 291
Query: 413 DMRQR--YEESTR----KYEEMR--DL---AWKYSPDIRQIDLDVNRTYREHNMFRDRYS 461
D + + KY + R DL +P R++ + + + R+ D +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSI-IAESIRDGLATWDNWK 348
Query: 462 -VKQTQLFNVLAAYSVYNLEIGYCQGM----------SQI-AAVLLMY---LSEEEAFWA 506
V +L ++ + S+ LE + M + I +L + + + +
Sbjct: 349 HVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 507 LSSLVS---------DSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVD 557
++ L +S S+ ++ KL H I+ + + K D ++
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDD-- 463
Query: 558 TGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLA----KLS 613
L D Y + ++L + + +
Sbjct: 464 --------------------LIPPYLDQYFYS------HIGHHLKNIEHPERMTLFRMVF 497
Query: 614 MDDILHFIQVKLEKQFQYTDDATIESLQKCLEELKRNKLDY--AGQPSPAELPKSPLGVF 671
+D F++ K+ T S+ L++LK K Y P L + + F
Sbjct: 498 LD--FRFLEQKIRH--DSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNA-ILDF 551
Query: 672 KPDAHAASFEQKF 684
P K+
Sbjct: 552 LPKIEENLICSKY 564
Score = 47.2 bits (111), Expect = 2e-05
Identities = 58/375 (15%), Positives = 105/375 (28%), Gaps = 122/375 (32%)
Query: 395 LLNLPDPGDGDESNPRSMDMRQRYEESTRKY--EEM--RDLAWKYSPDIRQIDLDVNRTY 450
++ D R +E + EE+ + + SP I+ +
Sbjct: 54 IIMSKDA---VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMT 109
Query: 451 REHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFW----A 506
R + RDR L+N ++ YN+ S + + A
Sbjct: 110 RMYIEQRDR-------LYNDNQVFAKYNV-------------------SRLQPYLKLRQA 143
Query: 507 LSSLVSDSKYSMHGFFIPGFPK--L----------------------LRYQEHHDKIMSK 542
L L + G + G K + L+ + ++ +
Sbjct: 144 LLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-E 200
Query: 543 FLPKLKKHLDKN---------NVDTGIYTLKWFFQCFLDRIPFK---LTLR-VWDIYILE 589
L KL +D N N+ I++++ + L P++ L L V +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 590 GERIMTAMAYN-----LLKMHQRQLA-KLSMDDILHFIQVKLEKQFQYTDDATIESLQKC 643
A+N LL +Q+ LS H T D L K
Sbjct: 261 --------AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKY 310
Query: 644 LE----------------------ELKRNKLD------YAGQPSPAELPKSPLGVFKPDA 675
L+ E R+ L + + +S L V +P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 676 HAASFEQKFDFDENI 690
+ F++ F +
Sbjct: 371 YRKMFDRLSVFPPSA 385
Score = 46.4 bits (109), Expect = 4e-05
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 40/191 (20%)
Query: 72 SAFGKHLLNSSFFIPGF-----PKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLK 126
S K S+ IP KL H I+ + + K D +++ Y +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDL-IPPYLDQ 471
Query: 127 WFFQCFLDRHYGYENGHINMNSEELLLRAAEERHAIVE-RYLKG--RHAGAEIHSWEEP- 182
+F+ H G+ H + + E R R ++ R+L+ RH +W
Sbjct: 472 YFYS-----HIGH---H--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST---AWNASG 518
Query: 183 -------DNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYS-VKQTQ 234
FY +I D KY + I LD E N+ +Y+ + +
Sbjct: 519 SILNTLQQLKFYKP-----YICDNDPKYERLVNAI-LDFLPKI-EENLICSKYTDLLRIA 571
Query: 235 LFNVLAAYSEM 245
L A E
Sbjct: 572 LMAEDEAIFEE 582
Score = 42.1 bits (98), Expect = 8e-04
Identities = 47/364 (12%), Positives = 101/364 (27%), Gaps = 107/364 (29%)
Query: 533 QEHHDKIMSKFLPKLKKHLDKNNVD---TGIYTLKWFFQCFLDRIPFKLTLRVWDIYILE 589
Q + I+S F + D +V I + + + + TLR++ + +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 590 GERIMTAMA-------YNLL--KMHQRQLAKLSMDDILHFIQ-------VKLEKQFQYTD 633
E ++ Y L + Q SM ++ Q ++ ++ +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 634 DATIESLQKCLEELKRNKLDY--------AGQPSPAELPKSPLGVFKPDAHAAS------ 679
L++ L EL+ K +G K+ + A
Sbjct: 134 LQPYLKLRQALLELRPAK--NVLIDGVLGSG--------KTWV--------ALDVCLSYK 175
Query: 680 FEQKFDF-------------DENIEKRKTIALEPQPSPAELPKSPLGVFKPDAHAASFEQ 726
+ K DF + +E + + + P+ S +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIHSIQA 232
Query: 727 KIGR--RSSEF------------SSVEKA---TQETVITRRDTAVALAALADRNSSIGTD 769
++ R +S + + A + + ++T R V +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--------DFLSAA 284
Query: 770 ASKYTPPSRRNSARELRDERDLASEYHDNR--DLANEYHDIG-----------RNSPNEW 816
+ + + + + L +Y D R DL E R+ W
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 817 -RWR 819
W+
Sbjct: 345 DNWK 348
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-05
Identities = 112/674 (16%), Positives = 189/674 (28%), Gaps = 242/674 (35%)
Query: 16 AIVERYLKGRHAGAEIHSWEEPDNDFYGNF---DRF---------GFITSSRQISRSELI 63
A R L H E H P F+ ++F GF + +EL+
Sbjct: 3 AYSTRPLTLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 64 CPF---------PTSIGSAFGKHLLNSSF--FIPGFPKLLRYQEHHDKIMSKFLPKLKKH 112
F P+ +G +LN F + L + H L
Sbjct: 62 GKFLGYVSSLVEPSKVGQF--DQVLNLCLTEFENCY---LEGNDIHA---------LAAK 107
Query: 113 LDKNNVDTGIYTLKWFFQCFLD-RHYGYENGHINMNSEELLLRAAEERHA---------- 161
L + N DT + K + ++ R + S L RA E +A
Sbjct: 108 LLQEN-DTTLVKTKELIKNYITARIMA--KRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 162 IVERYLKGRHAGAEIHSWEEPDNDFYGNFDRF-GFITDLAWKYSPDIRQIDLDVNRTYRE 220
+ Y + E+ D Y + + DL I+ ++ R
Sbjct: 165 NTDDYFE------ELR-------DLY---QTYHVLVGDL-------IKFSAETLSELIRT 201
Query: 221 HNMFRDRYSVKQTQLFNVLAAYSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVK 280
+ TQ N+ L W +P D D + S
Sbjct: 202 TLDAEKVF----TQGLNI---------LEWLENPS-NTPDKDYLLSI--------PISCP 239
Query: 281 Q---TQLFNVLAAYSVYNLEIGYC--------QGMSQIAAVLLMYLSEEEAFWALSSLVS 329
Q LA Y V +G+ +G + + L+ A A++ +
Sbjct: 240 LIGVIQ----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT------AV-AIAE--T 286
Query: 330 DSKYSMHESSAQKDGLEKKDKEIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRG 389
DS S S K I + +F + R Y+ PN+
Sbjct: 287 DSWESFFVSV---------RKAITV--------LFF---------IGVRCYEAYPNT--- 317
Query: 390 RGWSL-LLNLPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLD-VN 447
SL L D + +E P M L+ I + + V
Sbjct: 318 ---SLPPSILEDSLENNEGVPSPM------------------LS------ISNLTQEQVQ 350
Query: 448 RTYREHNMFRDRYSVKQTQLFN-----VLAAY--SVYNLEIGY-----CQGMSQIAAVLL 495
+ N + L N V++ S+Y L + G+ Q
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ------ 404
Query: 496 MYLSEEEAFWALSSLVSDSKYSMHGFFIP-GFPKLLRYQEHHDKIMSKFLPKLKKHLDKN 554
S F S+ K F+P P + H ++ + K L KN
Sbjct: 405 ---SRIP-F-------SERKLKFSNRFLPVASP----F---HSHLLVPASDLINKDLVKN 446
Query: 555 NVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSM 614
NV ++ IP V+D + +G + ++ ++ + + +L +
Sbjct: 447 NVSFNAKDIQ---------IP------VYDTF--DGSD-LRVLSGSISERIVDCIIRLPV 488
Query: 615 D-------DILHFI 621
H +
Sbjct: 489 KWETTTQFKATHIL 502
Score = 42.0 bits (98), Expect = 0.001
Identities = 66/396 (16%), Positives = 103/396 (26%), Gaps = 128/396 (32%)
Query: 508 SSLVSDSKYS----MHGFFIPGFPKLLRYQEHHDKIMS------KFLPKLKKHLDKNNVD 557
LV + + + F P+ D+ + KFL + ++ + V
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 558 TGIYTLKWFFQCFLDRIPFKLTLRVWDIY-----ILEGERIMTAMAYNLLK-------MH 605
L F + L DI+ +L+ L+K M
Sbjct: 79 QFDQVLNLCLTEFENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 606 QRQLAKLSMDDILHFIQ---VKLEKQF--Q-------------YTD-----DATIESLQK 642
+R K S + + +L F Q Y I+ +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 643 CLEELKRNKLDYAGQPSPAELPKSPLGVFKPDAHAASFEQKFDFDENIEKRKTIALEPQP 702
L EL R + + K F Q + E +E P
Sbjct: 194 TLSELIR---------TTLDAEK-------------VFTQGLNILEWLENP-----SNTP 226
Query: 703 SPAEL---PKS-PL-GVFKPDAHAASFEQKIGRRSSEFSSVEKAT---QETVITRRDTAV 754
L P S PL GV + AH + +G E S K + ++ TAV
Sbjct: 227 DKDYLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAV 281
Query: 755 ALAALAD------RNSS--------IGTDASKYTPPSRRNSARELRDE------------ 788
A+A D + IG + P + L D
Sbjct: 282 AIAE-TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILEDSLENNEGVPSPML 339
Query: 789 --RDLASEY------HDNRDLANEYH-DIG-RNSPN 814
+L E N L +I N
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Score = 41.6 bits (97), Expect = 0.001
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 32/136 (23%)
Query: 367 WDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMDMRQRYEESTRKYE 426
W++ AD + Y G+S+L D +NP ++ + E+ R E
Sbjct: 1646 WNR--ADNHFKDTY----------GFSIL-------DIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 427 EMRDLAWKYSPDIRQIDLDVNRTYREHN---MFR-DRYSVKQTQ-----LFNVLAAYSVY 477
+ ++ D + + + EH+ FR ++ + TQ L L + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKAAF 1744
Query: 478 NL--EIGYCQGMSQIA 491
G + A
Sbjct: 1745 EDLKSKGLIPADATFA 1760
Score = 37.3 bits (86), Expect = 0.024
Identities = 86/484 (17%), Positives = 141/484 (29%), Gaps = 195/484 (40%)
Query: 298 IGYC------QGMSQIAAVLLMYLSE-EEAFWALSSLVSDSKYSMHESSAQKDGLEKKDK 350
+GY + Q VL + L+E E + L +D +H +A+ +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEG--ND----IHALAAKLLQ----EN 112
Query: 351 EIELEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGD------- 403
+ L + K+ K + A + +R + NS L G+
Sbjct: 113 DTTLVKTKELIKNYIT-----ARIMAKRPFDKKSNS-------ALFRAVGEGNAQLVAIF 160
Query: 404 GDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQI--------------DLDVNRT 449
G + N Y +EE+RDL Y + + LD +
Sbjct: 161 GGQGNT------DDY------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 450 Y----------REHNMFRDR-------YSVKQ---TQLFNVLAAYSVYNLEIGYC----- 484
+ + D+ S Q LA Y V +G+
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LAHYVVTAKLLGFTPGELR 264
Query: 485 ---QGMSQ-----IAAVLL-MYLSEEE-----------AFW------------ALS-SLV 511
+G + + AV + S E F+ +L S++
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 512 SDSKYSMHGFFIPGFPKL----LRYQEHHDKIMSKF---LPKLKKHL-------DKNNVD 557
DS + G +P P L L QE ++K LP K + KN V
Sbjct: 325 EDSLENNEG--VPS-PMLSISNLT-QEQVQDYVNKTNSHLPA-GKQVEISLVNGAKNLVV 379
Query: 558 TG----IYTLKWFF----------QCFLDRIPF---KLT-----LRVWDIY---ILEG-- 590
+G +Y L Q RIPF KL L V + +L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 591 ERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQY-TDDATIESLQKCLEELKR 649
+ I + N + + + + I V Y T D L+ +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQ----------IPV-------YDTFDG--SDLRVLSGSISE 477
Query: 650 NKLD 653
+D
Sbjct: 478 RIVD 481
Score = 31.2 bits (70), Expect = 2.1
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 29/97 (29%)
Query: 589 EGERIMTAM-AYNLLKMHQRQLAKLSMDDILHFIQVKLEKQ--------F-----QY--- 631
E R M A N ++ A S + + + ++ ++ + QY
Sbjct: 1801 ELGRSNYGMIAINPGRVA----ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 632 -TDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSP 667
A ++++ L +K K+D EL KS
Sbjct: 1857 GDLRA-LDTVTNVLNFIKLQKIDI------IELQKSL 1886
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.5
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 21/46 (45%)
Query: 641 QKCLEELKRNKLDYAGQPSPAELPKSPLGVFKPD-AHA----ASFE 681
+K + LK KL + L ++ D A A A+ E
Sbjct: 18 EK--QALK--KLQ------------ASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 2.5
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 15/40 (37%)
Query: 691 EKRKTIALEPQPSPAELPKSPLGVFKPD-AHA----ASFE 725
EK+ L+ + L ++ D A A A+ E
Sbjct: 18 EKQALKKLQ----------ASLKLYADDSAPALAIKATME 47
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET:
PEG; 2.20A {Bacillus phage ga-1}
Length = 129
Score = 29.7 bits (66), Expect = 1.7
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 171 HAGAEIHSWEEPDNDFYGNFDRFGFITDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSV 230
H G + D + +G + W+ + D + ++ RE + YS+
Sbjct: 44 HFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDEYDSEGNLVEKGREAG---NIYSI 100
Query: 231 KQTQLFNVLAAYSEMR 246
+ T+ + A +
Sbjct: 101 RPTECQWLEMACMRRK 116
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 29.4 bits (65), Expect = 6.8
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 505 WALSSLVSDSKYSMHGFFIPGFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLK 564
A+ L S + ++ + ++++ +HD +++FL K N G + L
Sbjct: 502 IAVQKLESLEDDDV-LHYLLQLVQAVKFEPYHDSALARFLLKRG----LRNKRIG-HFLF 555
Query: 565 WFFQCFLDRIPFKLTLRVWDIYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVK 624
WF + + + + IL E + +L +Q+ + M +
Sbjct: 556 WFLRSEIAQSR---HYQQRFAVIL--EAYLRGCGTAMLHDFTQQVQVIDMLQKVTIDIKS 610
Query: 625 LEKQFQYTDDATIESLQKCLEELKRNKLDYAGQPSPAELPKSP 667
L + I L++ LE L+ L P +P P
Sbjct: 611 LSAEKYDVSSQVISQLKQKLENLQNLNL-----PQSFRVPYDP 648
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 8.9
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 341 QKDGLEKKDKEIELEREKKW----AKMFHKWDKVPADKLKRR 378
Q+ L++ D E++W K +W++ ++++++
Sbjct: 94 QRKRLQELDAA-SKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A
{Homo sapiens}
Length = 211
Score = 28.1 bits (62), Expect = 9.8
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 398 LPDPGDGDESNPRSMDMRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNM 455
+P+P D+R +++ +K E D +WK P ++ + + ++ H +
Sbjct: 19 VPNPSWNK-------DLRLLFDQFMKKCE---DGSWKRLPSYKRTPTEWIQDFKTHFL 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.410
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,221,695
Number of extensions: 828164
Number of successful extensions: 1904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1850
Number of HSP's successfully gapped: 46
Length of query: 827
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 725
Effective length of database: 3,853,851
Effective search space: 2794041975
Effective search space used: 2794041975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)