RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18019
         (827 letters)



>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score =  111 bits (278), Expect = 1e-28
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 5/168 (2%)

Query: 354 LEREKKWAKMFHKWDKVPADKLKRRVYKGIPNSCRGRGWSLLLNLPDPGDGDESNPRSMD 413
           ++R  K+  +      +    L++  + GIP   R   W LL+        +        
Sbjct: 4   IQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPV---NTKRQEGFL 60

Query: 414 MRQRYEESTRKYEEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAA 473
            R+R E          D   +  P   QI++D+ RT     +++ +    Q  L  +L  
Sbjct: 61  QRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV--QNSLQRILYL 118

Query: 474 YSVYNLEIGYCQGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHGF 521
           +++ +   GY QG++ +          E    +    V     S +  
Sbjct: 119 WAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMV 166



 Score = 75.3 bits (184), Expect = 5e-16
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 242 YSEMRDLAWKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSVYNLEIGYC 301
                D   +  P   QI++D+ RT     +++ +    Q  L  +L  +++ +   GY 
Sbjct: 72  KHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSV--QNSLQRILYLWAIRHPASGYV 129

Query: 302 QGMSQIAAVLLMYLSEEEAFWALSSLVSDSKYSMHESSAQKDGLE 346
           QG++ +          E    +    V     S +    Q   LE
Sbjct: 130 QGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLE 174


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 83.3 bits (205), Expect = 6e-19
 Identities = 15/110 (13%), Positives = 36/110 (32%)

Query: 525 GFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWD 584
           G P +LR  ++  +++ +    L  H    +V+   +  +W     +        +R+WD
Sbjct: 1   GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 60

Query: 585 IYILEGERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQVKLEKQFQYTDD 634
            Y+ E  + +T+         +  +              K  +       
Sbjct: 61  TYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALS 110



 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 19/167 (11%), Positives = 45/167 (26%), Gaps = 27/167 (16%)

Query: 87  GFPKLLRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRHYGYENGHINM 146
           G P +LR  ++  +++ +    L  H    +V+   +  +W     +             
Sbjct: 1   GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREF---------- 50

Query: 147 NSEELLLR------AAEERHAIVERYLKGRHAGAEIHSWEEPDNDFYGNFDRFGFITDLA 200
                ++R      +   +       +        +   E     F      F   T   
Sbjct: 51  -QMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTAL 109

Query: 201 WKYSPDIRQIDLDVNRTYREHNMFRDRYSVKQTQLFNVLAAYSEMRD 247
              +P+             E +    + S+ +  +F   A   +  D
Sbjct: 110 SNMTPNNA----------VEDSGKMRQSSLNEFHVFVCAAFLIKWSD 146


>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 176

 Score = 28.8 bits (64), Expect = 1.9
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 530 LRYQEHHDKIMSKFLPKLKKHLDKNNVDTGIYTLKWFFQCFLDRIPFKLTLRVWDIYILE 589
           +  + H D ++ +   K+   L+    +          Q  L R+     L+     IL 
Sbjct: 19  IPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS 78

Query: 590 -GERIMTAMAYNLLKMHQRQLAKLSMDDILHFIQ 622
              R++ A    L        A  +M+      Q
Sbjct: 79  KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQ 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,231,852
Number of extensions: 159901
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 18
Length of query: 827
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 734
Effective length of database: 1,130,706
Effective search space: 829938204
Effective search space used: 829938204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)