Query psy1802
Match_columns 325
No_of_seqs 131 out of 465
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:26:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03124 EXS: EXS family; Int 100.0 6.2E-77 1.3E-81 575.2 25.7 299 18-324 1-307 (345)
2 KOG1162|consensus 100.0 5.4E-70 1.2E-74 548.1 23.4 293 18-324 263-555 (617)
3 COG5409 EXS domain-containing 100.0 1.5E-54 3.3E-59 404.8 16.5 286 17-322 35-328 (384)
4 PF11120 DUF2636: Protein of u 26.0 96 0.0021 22.8 3.3 37 99-135 6-42 (62)
5 COG5522 Predicted integral mem 23.0 4.3E+02 0.0094 24.3 7.5 30 23-52 154-184 (236)
6 PHA00425 DNA packaging protein 22.4 63 0.0014 25.0 1.8 24 207-230 19-43 (88)
7 PF11123 DNA_Packaging_2: DNA 22.1 65 0.0014 24.6 1.8 21 207-227 17-37 (82)
8 PF11753 DUF3310: Protein of u 20.8 47 0.001 23.9 0.8 11 221-231 30-40 (60)
9 PF04136 Sec34: Sec34-like fam 20.6 74 0.0016 27.5 2.2 74 125-232 78-151 (157)
10 PF05545 FixQ: Cbb3-type cytoc 19.0 1.6E+02 0.0035 20.0 3.2 29 18-46 6-34 (49)
No 1
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=6.2e-77 Score=575.22 Aligned_cols=299 Identities=44% Similarity=0.809 Sum_probs=270.9
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHhhcCCCceEEEeecCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----
Q psy1802 18 GVRLFRGPLLFIEFLFLIGINVYGWRSSGVNHVLIFELNPRNHLSEQHIMELAAMLGVVWTLAVLGFLYSGTLGIP---- 93 (325)
Q Consensus 18 ~~~lyr~~~l~~l~~~l~g~n~~vw~~~~INy~~IFe~d~r~~l~~~~~~~~a~~~~~~~~l~~~~fl~~~~~~~~---- 93 (325)
++++||+++++++++|+||+|+++|+++||||++|||+||+++++++|++++++++++++++++..++.....+..
T Consensus 1 ~~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~ 80 (345)
T PF03124_consen 1 LPPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFAN 80 (345)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 3689999999999999999999999999999999999999999999999999999999999988887765443321
Q ss_pred ---cchhHHHHHHHHHHHHHcCcccchhhHHHHHHHHhhhhhhcCceeeecchhhHHHhhhcHHHHhhhhhhhhhhhccC
Q psy1802 94 ---PYTTPLVLILIMTVFLFNPTKTLYYEARFWTLKILTRVLMAPLFHVNFADFWLADQLNSLVPAILDLQYLVCFYATD 170 (325)
Q Consensus 94 ---~~~~Pl~~~~~~l~~l~~P~~~~~~~~R~~ll~~l~r~l~~pf~~V~F~Df~laDqltSl~~~l~D~~~~~c~~~~~ 170 (325)
.+++|+++++++++++++|.+++++++|+|+++++.|++.+|+.+|+|+|||+||||||++|+++|+++++|+|.+
T Consensus 81 ~~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~- 159 (345)
T PF03124_consen 81 WYFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFS- 159 (345)
T ss_pred hhhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-
Confidence 2378999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCcccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy1802 171 DSWMYFSTFPKDSSKCVDKVLYLRPVVACLPAWFRFAQCLRRYKDTKEKFPHLANAGKYATTFFVVIFSFLNIELTKRGH 250 (325)
Q Consensus 171 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~lP~~iR~~QClrry~dt~~~~~hL~Na~KY~~s~~v~~~~~l~~~~~~~~~ 250 (325)
+.+. ++.++|++.+....|+++++|++||++||+|||+||+++.+||.||+||++++++++++++.+.+++++
T Consensus 160 ~~~~------~~~~~c~~~~~~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~- 232 (345)
T PF03124_consen 160 GSFT------SPSNQCGSSSWYIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSD- 232 (345)
T ss_pred cccc------CCCCcCccccHhHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence 3332 235789988877889999999999999999999999997799999999999999999999988765532
Q ss_pred CCchhHHHHHHHHHHhhhhhhhhhhhhccCCccCCC-CCCCCCCCccccCCCceeehhhhhhHHHHHHhhhhhhc
Q psy1802 251 PSNMFFYLWILSSIISSCYSYMWDIRMDWGLFDDNT-GEYTLLRDEIVYSSTTYYYVAIIEDFILRFGWALLDYL 324 (325)
Q Consensus 251 ~~~~~~~~wi~~~~i~S~Ys~~WDi~mDWgL~~~~~-~~~~~LR~~l~y~~~~~Yy~Aiv~n~ilRf~W~~~ls~ 324 (325)
.+...+.+|++++++||+||++|||+|||||+++++ +++++||++++||+|++||+||+.|+++|++|+++++.
T Consensus 233 ~~~~~~~~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~ 307 (345)
T PF03124_consen 233 SSIWLFILWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSP 307 (345)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 223578999999999999999999999999997652 57999999999998899999999999999999999864
No 2
>KOG1162|consensus
Probab=100.00 E-value=5.4e-70 Score=548.11 Aligned_cols=293 Identities=41% Similarity=0.759 Sum_probs=270.1
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHhhcCCCceEEEeecCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchh
Q psy1802 18 GVRLFRGPLLFIEFLFLIGINVYGWRSSGVNHVLIFELNPRNHLSEQHIMELAAMLGVVWTLAVLGFLYSGTLGIPPYTT 97 (325)
Q Consensus 18 ~~~lyr~~~l~~l~~~l~g~n~~vw~~~~INy~~IFe~d~r~~l~~~~~~~~a~~~~~~~~l~~~~fl~~~~~~~~~~~~ 97 (325)
++|+| |+++++++.+++|.|+|+|+++||||++|||+|+++++++++++++++..+++++++++.++.....+.++++.
T Consensus 263 ~~~l~-~~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 341 (617)
T KOG1162|consen 263 MFPLY-GFGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQTTELS 341 (617)
T ss_pred HHHHH-HHHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccc
Confidence 45555 59999999999999999999999999999999999999999999999999999999999998887777789999
Q ss_pred HHHHHHHHHHHHHcCcccchhhHHHHHHHHhhhhhhcCceeeecchhhHHHhhhcHHHHhhhhhhhhhhhccCCCccccc
Q psy1802 98 PLVLILIMTVFLFNPTKTLYYEARFWTLKILTRVLMAPLFHVNFADFWLADQLNSLVPAILDLQYLVCFYATDDSWMYFS 177 (325)
Q Consensus 98 Pl~~~~~~l~~l~~P~~~~~~~~R~~ll~~l~r~l~~pf~~V~F~Df~laDqltSl~~~l~D~~~~~c~~~~~~~~~~~~ 177 (325)
|+.++++++.++++|++++|+++|+|+++++.|++.+|+++|.|.|||+|||+||++++++|+++++|+|..+ +|..+
T Consensus 342 Pl~ll~~~~~~L~~Pf~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~-~~~~~- 419 (617)
T KOG1162|consen 342 PLILLLLFFFLLVCPFNTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTG-DFQAR- 419 (617)
T ss_pred hHHHHHHHHheeeccchhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccc-ccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 67643
Q ss_pred CCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q psy1802 178 TFPKDSSKCVDKVLYLRPVVACLPAWFRFAQCLRRYKDTKEKFPHLANAGKYATTFFVVIFSFLNIELTKRGHPSNMFFY 257 (325)
Q Consensus 178 ~~~~~~~~C~~~~~~~~~~~~~lP~~iR~~QClrry~dt~~~~~hL~Na~KY~~s~~v~~~~~l~~~~~~~~~~~~~~~~ 257 (325)
+...|.+....+.++++++|+++|++||+|||+|+ +..+||+||+||+++++++.++++++.++++ ..+++
T Consensus 420 ----~~~~~~~~~~~~~~iva~lP~~~RfLQClRR~~d~-~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~----~~~~~ 490 (617)
T KOG1162|consen 420 ----RTCYCKDDYIEFQSIVAVLPYWFRFLQCLRRYRDE-KAFPHLLNALKYSTTILAVMLTTLYRILPGS----SLWFA 490 (617)
T ss_pred ----cccccccchHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHhHHHHHHHHHHHHHHHHHHHHHHcCCc----chHHH
Confidence 14467777778999999999999999999999999 5579999999999999999999998886442 47999
Q ss_pred HHHHHHHHhhhhhhhhhhhhccCCccCCCCCCCCCCCccccCCCceeehhhhhhHHHHHHhhhhhhc
Q psy1802 258 LWILSSIISSCYSYMWDIRMDWGLFDDNTGEYTLLRDEIVYSSTTYYYVAIIEDFILRFGWALLDYL 324 (325)
Q Consensus 258 ~wi~~~~i~S~Ys~~WDi~mDWgL~~~~~~~~~~LR~~l~y~~~~~Yy~Aiv~n~ilRf~W~~~ls~ 324 (325)
+|++++.+||+|+++||++|||||+++++ + ++||++++||+|++||+||+.|++||++|++.+++
T Consensus 491 l~~~~s~vaS~y~~~WDvv~DWgLl~~~~-~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~ 555 (617)
T KOG1162|consen 491 LWILSSKVASLYTTYWDVVMDWGLLNRKS-K-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTIL 555 (617)
T ss_pred HHHHHHHHHHHHHHHHHHheecccccccC-c-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998873 4 99999999999999999999999999999877653
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-54 Score=404.81 Aligned_cols=286 Identities=28% Similarity=0.453 Sum_probs=242.1
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHhhcCCCceEEEeecCCCC----CChHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q psy1802 17 IGVRLFRGPLLFIEFLFLIGINVYGWRSSGVNHVLIFELNPRNH----LSEQHIMELAAMLGVVWTLAVLGFLYSGT--- 89 (325)
Q Consensus 17 ~~~~lyr~~~l~~l~~~l~g~n~~vw~~~~INy~~IFe~d~r~~----l~~~~~~~~a~~~~~~~~l~~~~fl~~~~--- 89 (325)
.+++++.|..+......++++|+|+|.|.+|||++||+++.++. ....+ ..+..-...|++++..|+....
T Consensus 35 ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~df--h~~~i~~~~~~~slfiFl~~v~g~~ 112 (384)
T COG5409 35 ILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDF--HRIIIPFHFFTTSLFIFLNAVEGLK 112 (384)
T ss_pred HHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhh--HHHhhhHHHHHHHHHHHHHHhhccc
Confidence 47999999888888888999999999999999999999986544 22221 1233334455666655554332
Q ss_pred CCC-CcchhHHHHHHHHHHHHHcCcccchhhHHHHHHHHhhhhhhcCceeeecchhhHHHhhhcHHHHhhhhhhhhhhhc
Q psy1802 90 LGI-PPYTTPLVLILIMTVFLFNPTKTLYYEARFWTLKILTRVLMAPLFHVNFADFWLADQLNSLVPAILDLQYLVCFYA 168 (325)
Q Consensus 90 ~~~-~~~~~Pl~~~~~~l~~l~~P~~~~~~~~R~~ll~~l~r~l~~pf~~V~F~Df~laDqltSl~~~l~D~~~~~c~~~ 168 (325)
+.+ -.+.+|++..+....+++.|+++.++.+|+|+++++.|++.+|..+|+|+||++|||++|++++++|+..+.|+|.
T Consensus 113 ~~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~ 192 (384)
T COG5409 113 FILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYS 192 (384)
T ss_pred cceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHh
Confidence 222 2568999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy1802 169 TDDSWMYFSTFPKDSSKCVDKVLYLRPVVACLPAWFRFAQCLRRYKDTKEKFPHLANAGKYATTFFVVIFSFLNIELTKR 248 (325)
Q Consensus 169 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~lP~~iR~~QClrry~dt~~~~~hL~Na~KY~~s~~v~~~~~l~~~~~~~ 248 (325)
+.+. ++ -|.+.++.+.++++++|..+|++||+|||+|+++.+|||+||+||++++|+..++++++.++++
T Consensus 193 --~~~~-------~p-Lc~sshs~~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~ 262 (384)
T COG5409 193 --LLFR-------EP-LCKSSHSDLSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGE 262 (384)
T ss_pred --hhcc-------cc-ccccCCcchHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCc
Confidence 3343 23 5888888899999999999999999999999999999999999999999999999998886533
Q ss_pred CCCCchhHHHHHHHHHHhhhhhhhhhhhhccCCccCCCCCCCCCCCccccCCCceeehhhhhhHHHHHHhhhhh
Q psy1802 249 GHPSNMFFYLWILSSIISSCYSYMWDIRMDWGLFDDNTGEYTLLRDEIVYSSTTYYYVAIIEDFILRFGWALLD 322 (325)
Q Consensus 249 ~~~~~~~~~~wi~~~~i~S~Ys~~WDi~mDWgL~~~~~~~~~~LR~~l~y~~~~~Yy~Aiv~n~ilRf~W~~~l 322 (325)
...++.|+.++.+||+||+.|||.|||++.....+++...|+++.++ |+.||+.|+++|++|++..
T Consensus 263 ----~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~ 328 (384)
T COG5409 263 ----ERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK----YHIAMIINFLLRFSWIVYY 328 (384)
T ss_pred ----ceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhHHH----HHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999765546667788887776 9999999999999999764
No 4
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=26.01 E-value=96 Score=22.79 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCcccchhhHHHHHHHHhhhhhhcC
Q psy1802 99 LVLILIMTVFLFNPTKTLYYEARFWTLKILTRVLMAP 135 (325)
Q Consensus 99 l~~~~~~l~~l~~P~~~~~~~~R~~ll~~l~r~l~~p 135 (325)
++-++++.++++.|+....++......+.+.+.+.+|
T Consensus 6 iiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~~l~~P 42 (62)
T PF11120_consen 6 IIQIIILCALIFFPLGYLARRWLPRIRRTLRRRLFPP 42 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 3445555566677887777777677778888888776
No 5
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=22.98 E-value=4.3e+02 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh-cCCCceEE
Q psy1802 23 RGPLLFIEFLFLIGINVYGWRS-SGVNHVLI 52 (325)
Q Consensus 23 r~~~l~~l~~~l~g~n~~vw~~-~~INy~~I 52 (325)
||.-.-++..-.+|+|++.|++ .|-||-++
T Consensus 154 sgl~~svl~~~~lg~~~lfinrrLGtNYlyl 184 (236)
T COG5522 154 SGLVMSVLVAISLGIMCLFINRRLGTNYLYL 184 (236)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCceeEe
Confidence 5666667778889999999976 89999887
No 6
>PHA00425 DNA packaging protein, small subunit
Probab=22.43 E-value=63 Score=24.97 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCccchhhHH-HHH
Q psy1802 207 AQCLRRYKDTKEKFPHLANAG-KYA 230 (325)
Q Consensus 207 ~QClrry~dt~~~~~hL~Na~-KY~ 230 (325)
.|-|...+|..++.|+|+||+ ||.
T Consensus 19 ~~mL~DL~ddekRtPQLYnAIgKlL 43 (88)
T PHA00425 19 QRMLADLKDDEKRTPQLYNAIGKLL 43 (88)
T ss_pred HHHHHHhcCccccChHHHHHHHHHH
Confidence 344555567777789999996 543
No 7
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.12 E-value=65 Score=24.64 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCccchhhHH
Q psy1802 207 AQCLRRYKDTKEKFPHLANAG 227 (325)
Q Consensus 207 ~QClrry~dt~~~~~hL~Na~ 227 (325)
.|-|.--+|..++.|+|+||+
T Consensus 17 ~~mL~DLr~dekRsPQLYnAI 37 (82)
T PF11123_consen 17 QQMLADLRDDEKRSPQLYNAI 37 (82)
T ss_pred HHHHHHhcchhhcChHHHHHH
Confidence 445556677777789999996
No 8
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.77 E-value=47 Score=23.94 Aligned_cols=11 Identities=45% Similarity=0.226 Sum_probs=9.2
Q ss_pred cchhhHHHHHH
Q psy1802 221 PHLANAGKYAT 231 (325)
Q Consensus 221 ~hL~Na~KY~~ 231 (325)
-++.||+||.+
T Consensus 30 f~~gnaiKY~~ 40 (60)
T PF11753_consen 30 FCLGNAIKYLW 40 (60)
T ss_pred HHHHHHHHHHH
Confidence 38999999973
No 9
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.58 E-value=74 Score=27.45 Aligned_cols=74 Identities=27% Similarity=0.299 Sum_probs=43.5
Q ss_pred HHHhhhhhhcCceeeecchhhHHHhhhcHHHHhhhhhhhhhhhccCCCcccccCCCCCCCccccccccchhhhhhhhHHH
Q psy1802 125 LKILTRVLMAPLFHVNFADFWLADQLNSLVPAILDLQYLVCFYATDDSWMYFSTFPKDSSKCVDKVLYLRPVVACLPAWF 204 (325)
Q Consensus 125 l~~l~r~l~~pf~~V~F~Df~laDqltSl~~~l~D~~~~~c~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~lP~~i 204 (325)
+..+-|-+.+|-..|. +|-|. |.|..+=.++. |.....++. . +=.|..
T Consensus 78 Ld~itr~Ln~p~~sV~-~~~F~-~~L~~LD~cl~-------Fl~~h~~fk----------e-------------a~~Y~~ 125 (157)
T PF04136_consen 78 LDPITRRLNSPGSSVN-SDSFK-PMLSRLDECLE-------FLEEHPNFK----------E-------------AEVYLI 125 (157)
T ss_pred HHHHHHHHcCCCCccc-chHHH-HHHHHHHHHHH-------HHHHhhhhh----------h-------------hHHHHH
Confidence 4566677778866676 55553 56666554442 222111111 1 124889
Q ss_pred HHHHHHHHHHhcCCCccchhhHHHHHHH
Q psy1802 205 RFAQCLRRYKDTKEKFPHLANAGKYATT 232 (325)
Q Consensus 205 R~~QClrry~dt~~~~~hL~Na~KY~~s 232 (325)
|+.||+.|.-.-=+ .|+.|.+|=++.
T Consensus 126 rf~q~ltRAl~lIk--~y~~~~l~~~~~ 151 (157)
T PF04136_consen 126 RFRQCLTRALTLIK--NYVVNTLRSATN 151 (157)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 99999999876532 377777775543
No 10
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=19.01 E-value=1.6e+02 Score=19.98 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHhhcC
Q psy1802 18 GVRLFRGPLLFIEFLFLIGINVYGWRSSG 46 (325)
Q Consensus 18 ~~~lyr~~~l~~l~~~l~g~n~~vw~~~~ 46 (325)
+-...++.+++++++.+.|+-.|++++-+
T Consensus 6 ~~~~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 6 LQGFARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 44567788888999999999999998654
Done!