Query psy1802
Match_columns 325
No_of_seqs 131 out of 465
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:27:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2r_A Antimicrobial peptide e 53.0 3.5 0.00012 25.6 0.4 10 207-216 9-18 (37)
2 2gww_B IPAA; protein complex, 25.6 34 0.0012 19.8 1.6 14 147-160 16-29 (30)
3 1u6h_B Talin; protein-protein 9.6 1.1E+02 0.0037 18.4 1.0 21 205-228 7-27 (31)
4 2qlw_A RHAU; mutarotase, isome 6.3 78 0.0027 26.0 -1.0 12 205-216 17-28 (144)
5 3bu8_A Telomeric repeat-bindin 5.6 2.9E+02 0.0099 24.3 2.2 16 201-216 57-72 (235)
6 3bqo_A Telomeric repeat-bindin 4.8 3.5E+02 0.012 23.4 2.2 16 201-216 63-78 (211)
7 3rw6_A Nuclear RNA export fact 4.7 2.2E+02 0.0076 25.2 1.0 45 118-164 34-84 (267)
8 3pk1_B Apoptosis regulator BAX 4.7 3.6E+02 0.012 16.5 1.6 16 201-216 7-22 (34)
9 1y4m_A HERV-FRD_6P24.1 proviru 4.4 3.8E+02 0.013 18.1 1.7 14 146-159 12-25 (53)
10 2wh6_B BCL-2-like protein 11; 4.3 5.5E+02 0.019 14.5 2.0 16 201-216 3-18 (26)
No 1
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=52.98 E-value=3.5 Score=25.57 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=8.8
Q ss_pred HHHHHHHHhc
Q psy1802 207 AQCLRRYKDT 216 (325)
Q Consensus 207 ~QClrry~dt 216 (325)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999886
No 2
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=25.59 E-value=34 Score=19.82 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.5
Q ss_pred HHhhhcHHHHhhhh
Q psy1802 147 ADQLNSLVPAILDL 160 (325)
Q Consensus 147 aDqltSl~~~l~D~ 160 (325)
-|.-||++|++.++
T Consensus 16 kdvttslskvlkni 29 (30)
T 2gww_B 16 KDVTTSLSKVLKNI 29 (30)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcc
Confidence 48889999998874
No 3
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=9.63 E-value=1.1e+02 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCccchhhHHH
Q psy1802 205 RFAQCLRRYKDTKEKFPHLANAGK 228 (325)
Q Consensus 205 R~~QClrry~dt~~~~~hL~Na~K 228 (325)
|++||-|+--|. ..+|.||.|
T Consensus 7 rLl~aak~vaea---ta~mVeaak 27 (31)
T 1u6h_B 7 KLLSAAKILADA---TAKMVEAAK 27 (31)
T ss_dssp HHHHHHHHHHHH---HHHHHHHTC
T ss_pred HHHHHHHHHHHH---HHHHHHHHH
Confidence 566666665554 346666655
No 4
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=6.25 E-value=78 Score=25.96 Aligned_cols=12 Identities=25% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc
Q psy1802 205 RFAQCLRRYKDT 216 (325)
Q Consensus 205 R~~QClrry~dt 216 (325)
-=.||+|+|+|.
T Consensus 17 ~~~~~~~~~~~~ 28 (144)
T 2qlw_A 17 GGQQMGRDLYDD 28 (144)
T ss_dssp ------------
T ss_pred hhHHHHHHHhcc
Confidence 357999999876
No 5
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=5.57 E-value=2.9e+02 Score=24.32 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhc
Q psy1802 201 PAWFRFAQCLRRYKDT 216 (325)
Q Consensus 201 P~~iR~~QClrry~dt 216 (325)
.--+|.+|||.|-.+-
T Consensus 57 ~k~iri~QfLsRI~eG 72 (235)
T 3bu8_A 57 SRLLRVMQCLSRIEEG 72 (235)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHcC
Confidence 4679999999998764
No 6
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=4.80 E-value=3.5e+02 Score=23.42 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhc
Q psy1802 201 PAWFRFAQCLRRYKDT 216 (325)
Q Consensus 201 P~~iR~~QClrry~dt 216 (325)
+-.+|.+|||.|-.+-
T Consensus 63 ~k~i~icQfL~RI~eG 78 (211)
T 3bqo_A 63 LRTIYICQFLTRIAAG 78 (211)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHcC
Confidence 5579999999998654
No 7
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=4.74 E-value=2.2e+02 Score=25.19 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhhhhhcCceeeecc------hhhHHHhhhcHHHHhhhhhhhh
Q psy1802 118 YEARFWTLKILTRVLMAPLFHVNFA------DFWLADQLNSLVPAILDLQYLV 164 (325)
Q Consensus 118 ~~~R~~ll~~l~r~l~~pf~~V~F~------Df~laDqltSl~~~l~D~~~~~ 164 (325)
.-.+.|+++.+.+-...||.||.|. .||+=|. +-+..+.+....+
T Consensus 34 ky~k~~ll~~i~~~~~~~f~p~~~~~~~~~~~ffV~~~--~~A~~l~~~~g~i 84 (267)
T 3rw6_A 34 KYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDA--STASALKAVNYKI 84 (267)
T ss_dssp GSCHHHHHHHHHHTCSSCCCCEEEEEETTEEEEEESCH--HHHHHHHHTTSSC
T ss_pred ccCHHHHHHHHHHhCCCCcEeEEEEEeCCEEEEEeCCh--HHHHHHHhcCcEE
Confidence 4468899999999888999999887 6888777 3344455544333
No 8
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=4.71 E-value=3.6e+02 Score=16.46 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHhc
Q psy1802 201 PAWFRFAQCLRRYKDT 216 (325)
Q Consensus 201 P~~iR~~QClrry~dt 216 (325)
|..=|+.|||++--|.
T Consensus 7 p~~K~l~~cL~~IgDE 22 (34)
T 3pk1_B 7 ASTKKLSECLKRIGDE 22 (34)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 5667899999998776
No 9
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=4.40 E-value=3.8e+02 Score=18.06 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.1
Q ss_pred HHHhhhcHHHHhhh
Q psy1802 146 LADQLNSLVPAILD 159 (325)
Q Consensus 146 laDqltSl~~~l~D 159 (325)
+.||++|++.+...
T Consensus 12 l~~ql~sla~vvlQ 25 (53)
T 1y4m_A 12 MQEQIDSLAAVVLQ 25 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67999999987643
No 10
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=4.33 E-value=5.5e+02 Score=14.53 Aligned_cols=16 Identities=38% Similarity=0.289 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHhc
Q psy1802 201 PAWFRFAQCLRRYKDT 216 (325)
Q Consensus 201 P~~iR~~QClrry~dt 216 (325)
|.-++..|=|||--|.
T Consensus 3 ~PE~~iAqELRRIGDe 18 (26)
T 2wh6_B 3 RPEIWIAQELRRIGDE 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHH
Confidence 5567899999998776
Done!