Query psy1802
Match_columns 325
No_of_seqs 131 out of 465
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 20:27:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3pvia_ c.52.1.6 (A:) Restrict 6.9 2.4E+02 0.017 20.8 4.2 34 203-238 8-47 (156)
2 d1rkla_ f.23.30.1 (A:) Oligosa 6.8 70 0.0051 18.0 0.8 15 148-162 5-19 (36)
3 d1jb0j_ f.23.18.1 (J:) Subunit 5.1 1.2E+02 0.0087 17.8 1.1 15 224-238 2-16 (41)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 5.0 2.5E+02 0.018 14.5 3.4 18 29-46 9-26 (27)
5 d1ji8a_ d.203.1.1 (A:) DsrC, t 4.7 2E+02 0.015 20.4 2.4 30 200-229 49-78 (111)
6 d3bqoa1 a.146.1.1 (A:62-265) T 4.6 1.7E+02 0.013 23.2 2.2 16 201-216 59-74 (204)
7 d2v4jc1 d.203.1.1 (C:3-105) Ds 4.4 2.2E+02 0.016 19.9 2.4 31 200-230 41-71 (103)
8 d1koha2 d.58.7.2 (A:105-200) m 4.1 1.8E+02 0.013 20.3 1.7 40 120-161 27-72 (96)
9 d1wvfa1 d.58.32.1 (A:243-521) 3.9 1.4E+02 0.01 23.9 1.2 28 201-232 247-274 (279)
10 d1q90n_ f.23.27.1 (N:) PetN su 3.9 3.4E+02 0.025 14.5 2.8 18 29-46 13-30 (31)
No 1
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=6.93 E-value=2.4e+02 Score=20.79 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhc------CCCccchhhHHHHHHHHHHHHH
Q psy1802 203 WFRFAQCLRRYKDT------KEKFPHLANAGKYATTFFVVIF 238 (325)
Q Consensus 203 ~iR~~QClrry~dt------~~~~~hL~Na~KY~~s~~v~~~ 238 (325)
+.|+.-|+|+|.+- ++- ---|.|||.--+++.-+
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDi--FQdNGGKlLQvlmi~gL 47 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDI--FQGNGGKLLQVLLITGL 47 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCT--TSTTHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHcCchhh--hhcCChhhhHHHHHhcc
Confidence 67888999999764 222 34699999876655433
No 2
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.83 E-value=70 Score=18.02 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=11.4
Q ss_pred HhhhcHHHHhhhhhh
Q psy1802 148 DQLNSLVPAILDLQY 162 (325)
Q Consensus 148 DqltSl~~~l~D~~~ 162 (325)
|||+|++..++=.-.
T Consensus 5 ~qln~~~i~fgi~mm 19 (36)
T d1rkla_ 5 EQLNSLAITFGIVMM 19 (36)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred hhcCcEEeehhHHHH
Confidence 799999888775443
No 3
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=5.15 E-value=1.2e+02 Score=17.85 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHH
Q psy1802 224 ANAGKYATTFFVVIF 238 (325)
Q Consensus 224 ~Na~KY~~s~~v~~~ 238 (325)
-|..||.++-||+..
T Consensus 2 ~~~~~ylstAPVla~ 16 (41)
T d1jb0j_ 2 KHFLTYLSTAPVLAA 16 (41)
T ss_dssp HHHHHHTTBHHHHHH
T ss_pred chHHHHHhhhHHHHH
Confidence 477899999998754
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.04 E-value=2.5e+02 Score=14.47 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy1802 29 IEFLFLIGINVYGWRSSG 46 (325)
Q Consensus 29 ~l~~~l~g~n~~vw~~~~ 46 (325)
.+.++-|++.+-+|.+.|
T Consensus 9 llvvftwsiamvvwgrng 26 (27)
T d2e74h1 9 LLVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhheeeeEEEccCC
Confidence 344566788888998876
No 5
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=4.67 E-value=2e+02 Score=20.44 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCccchhhHHHH
Q psy1802 200 LPAWFRFAQCLRRYKDTKEKFPHLANAGKY 229 (325)
Q Consensus 200 lP~~iR~~QClrry~dt~~~~~hL~Na~KY 229 (325)
-.--|..++-+|+|++..+..|.+-.-.|+
T Consensus 49 t~~Hw~vI~~lR~~y~~~~~~P~~R~l~k~ 78 (111)
T d1ji8a_ 49 TEEHWKLVKYLREYWETFGTCPPIKMVTKE 78 (111)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCSTTGGGG
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcHHHHHHH
Confidence 367899999999999885544444333343
No 6
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.61 E-value=1.7e+02 Score=23.16 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhc
Q psy1802 201 PAWFRFAQCLRRYKDT 216 (325)
Q Consensus 201 P~~iR~~QClrry~dt 216 (325)
+-.+|++|||.|-.+-
T Consensus 59 ~k~i~i~QfLsRI~eG 74 (204)
T d3bqoa1 59 LRTIYICQFLTRIAAG 74 (204)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHcC
Confidence 3468999999998654
No 7
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=4.39 E-value=2.2e+02 Score=19.93 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCccchhhHHHHH
Q psy1802 200 LPAWFRFAQCLRRYKDTKEKFPHLANAGKYA 230 (325)
Q Consensus 200 lP~~iR~~QClrry~dt~~~~~hL~Na~KY~ 230 (325)
-+--|..+.-+|+|++..+..|.+-...|+.
T Consensus 41 t~~HW~vI~~lR~~y~~~~~~P~~R~l~K~~ 71 (103)
T d2v4jc1 41 SPDHQKIIDFLQDYYKKNGIAPMVRILSKNT 71 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcHHHHHHHh
Confidence 4678999999999998865556555555543
No 8
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.14 E-value=1.8e+02 Score=20.26 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhhhhcCceeeecc------hhhHHHhhhcHHHHhhhhh
Q psy1802 120 ARFWTLKILTRVLMAPLFHVNFA------DFWLADQLNSLVPAILDLQ 161 (325)
Q Consensus 120 ~R~~ll~~l~r~l~~pf~~V~F~------Df~laDqltSl~~~l~D~~ 161 (325)
-+.|+++++..+..-||.||.|. -||+=|. +.+..+.|+.
T Consensus 27 dK~wLl~~iq~~~pv~F~Pv~fh~~~~~a~FfV~D~--~~A~aL~~~s 72 (96)
T d1koha2 27 DKAWLLSMIQSKSSVPFTPIEFHYENTRAQFFVEDA--STASALKAVN 72 (96)
T ss_dssp CHHHHHHHHHHTCSSCCCCBSCCEETTEECCEECCH--HHHHTTGGGT
T ss_pred CHHHHHHHHHhcCCCCceeEEEEEcCCEEEEEeCCH--HHHHHHHHCC
Confidence 45699998888777788888763 3444443 2235555544
No 9
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Probab=3.94 E-value=1.4e+02 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhcCCCccchhhHHHHHHH
Q psy1802 201 PAWFRFAQCLRRYKDTKEKFPHLANAGKYATT 232 (325)
Q Consensus 201 P~~iR~~QClrry~dt~~~~~hL~Na~KY~~s 232 (325)
|..+++++=+++-.|.+ .++|-|||..+
T Consensus 247 ~~~~~lm~~iK~alDP~----~IlNPGK~Gi~ 274 (279)
T d1wvfa1 247 PVKRKLEHAIKRAVDPN----NILAPGRSGID 274 (279)
T ss_dssp HHHHHHHHHHHHHHCTT----CCBCTTGGGCC
T ss_pred HHHHHHHHHHHHHhCCC----cCCCCCCCCCC
Confidence 67888888888888885 57899998754
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.94 E-value=3.4e+02 Score=14.47 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy1802 29 IEFLFLIGINVYGWRSSG 46 (325)
Q Consensus 29 ~l~~~l~g~n~~vw~~~~ 46 (325)
+...+.|++.+-+|-|.|
T Consensus 13 ~~atfsfslslvvwgrsg 30 (31)
T d1q90n_ 13 TCVMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHhheeeEEEEEEeccC
Confidence 344567888888998876
Done!