RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1802
(325 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.020
Identities = 34/241 (14%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 138 HVNFADFWL---ADQLNSLVPAILDLQYLVCFYATDDSWMY--FSTFPKDS--------- 183
+ D W D+L +++ + L+ + M+ S FP +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLN-----VLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 184 --------------SKCVDKVL---------------YLRPVVACLPAWFRFAQCLRRYK 214
+K L YL V + + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 215 DTKEKFPH---LANAGKYATTFFVVIFSFL-----NIELTKRGHPSNMF--FYL---WIL 261
K +Y +S + NIE +R +F +L ++
Sbjct: 455 IPKTFDSDDLIPPYLDQY-------FYSHIGHHLKNIEHPER---MTLFRMVFLDFRFLE 504
Query: 262 SSIISSCYSYMWDIRMDWGLFDDNTGEYTLLRDEIVYSSTTYY-YVAIIEDFILRFGWAL 320
I + W+ G + + + I + Y V I DF+ + L
Sbjct: 505 QKIRHDSTA--WNAS---GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 321 L 321
+
Sbjct: 560 I 560
Score = 34.4 bits (78), Expect = 0.047
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 21 LFRGPLLFIEFLFL---IGINVYGWRSSGVNHVLIFELNP-RNHLSEQHIMELAAMLGVV 76
LFR ++F++F FL I + W +SG + +L + ++ + + ++
Sbjct: 492 LFR--MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVN-- 546
Query: 77 WTLAVLGFL--YSGTLGIPPYTTPLVLILIMTVFLFNPTKTLYYEA 120
A+L FL L YT ++ + L + ++ EA
Sbjct: 547 ---AILDFLPKIEENLICSKYTD------LLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.17
Identities = 52/309 (16%), Positives = 81/309 (26%), Gaps = 108/309 (34%)
Query: 27 LFIEFLFLIGINVYGWRSSGVNHVLI-----FELNPRNHLSEQHIMELAAMLGVVWTLAV 81
L +FL + V + + VL FE +L I LAA L
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKL-------- 108
Query: 82 LGFLYSGTLGIPPYTTPLVLILIMTVFLFNPTKTLYYEARFWTLKILTRVLMAPLF-HVN 140
L T LI Y AR + + + LF V
Sbjct: 109 --------LQENDTTLVKTKELIKN----------YITARIMAKRPFDKKSNSALFRAVG 150
Query: 141 ------FADFWLADQLNSLVPAILD-LQYLVCFYATDDSWMYFSTFPKDSSKCVDKVLYL 193
A F Q N+ + L+ L Y T + D K + L
Sbjct: 151 EGNAQLVAIF--GGQGNTDDY--FEELRDL---YQT------YHVLVGDLIKFSAETL-- 195
Query: 194 RPVVACLPAWFRFAQCLRRYKDTKEKFPH-------LANAGKY-ATTFFVVI-FSFLNIE 244
++ +R D ++ F L N + + I S I
Sbjct: 196 -------------SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 245 LTKRGH-----------PSNMFFYLW---------ILSSIISSCYSYMWDIRMDWGLFDD 284
+ + H P + YL + + I+ W F
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET--------DSWESFFV 294
Query: 285 NTGEY-TLL 292
+ + T+L
Sbjct: 295 SVRKAITVL 303
Score = 30.0 bits (67), Expect = 1.3
Identities = 38/207 (18%), Positives = 53/207 (25%), Gaps = 77/207 (37%)
Query: 13 DDWRIGVRLFRGPLLFIEFLFLIGINVYGWRSSGVNHVLIFELNPRNHLSEQHIMELAA- 71
D W F I LF I G R E P L + +
Sbjct: 287 DSWE---SFFVSVRKAITVLFFI-----GVRCY--------EAYPNTSLPPSILEDSLEN 330
Query: 72 -------MLGVV-WTLAVLGFLYSGTLGIPPYTTPLVLILIMTVFLFN---------PTK 114
ML + T + + T P + + L+ N P +
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV------NGAKNLVVSGPPQ 384
Query: 115 TLY---------------------YEARFWTLKILTRVL--MAPLFH-------VNFADF 144
+LY + R LK R L +P FH + +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSER--KLKFSNRFLPVASP-FHSHLLVPASDLINK 441
Query: 145 WLADQLNSLVPAILDLQYLVCFYATDD 171
L S D+Q V Y T D
Sbjct: 442 DLVKNNVSFNAK--DIQIPV--YDTFD 464
Score = 28.9 bits (64), Expect = 2.7
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 20/67 (29%)
Query: 1 MNYLAGIFRQTRDDWRIGVRL------------FRGP--LLFI-EF----LFLIGINVY- 40
NY A IF D ++ FR LL +F L L+ +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 41 GWRSSGV 47
+S G+
Sbjct: 1746 DLKSKGL 1752
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 28.0 bits (63), Expect = 4.2
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 27/91 (29%)
Query: 154 VPAILD-----------LQYLVCFYATDDSWMYFSTFPKDSSK--CVDKVLY-----LRP 195
+P + D L YLV Y D++ PKD VD+ L+ L
Sbjct: 54 IPTMDDHGLVLWESRVILSYLVSAYGKDENLY-----PKDFRSRAIVDQRLHFDLGTLYQ 108
Query: 196 VVACLPAWFRFAQCLRRYKDTKEKFPHLANA 226
+ F + K LA A
Sbjct: 109 R----VVDYYFPTIHLGAHLDQTKKAKLAEA 135
>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST;
HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A*
3f6f_A 3gh6_A* 1jlv_A*
Length = 209
Score = 27.5 bits (62), Expect = 4.7
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 18/55 (32%)
Query: 151 NSLVPAILD-----------LQYLVCFYATDDSWMYFSTFPKDSSK--CVDKVLY 192
+P ++D YLV Y DS PK K +++ LY
Sbjct: 50 QHTIPTLVDNGFALWESRAIQVYLVEKYGKTDSLY-----PKCPKKRAVINQRLY 99
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A
{Bombyx mori}
Length = 216
Score = 27.6 bits (62), Expect = 5.0
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 154 VPAILD-----------LQYLVCFYATDDSWMYFSTFPKDSSK--CVDKVLY-----LRP 195
VP + D YL Y DD W +PKD K V++ LY L
Sbjct: 55 VPTLDDNNFVLWESRAIACYLADKYGKDDQW-----YPKDLQKRAVVNQRLYFDSASLYV 109
Query: 196 VVACLPAWFRFAQCLRRYKDTKEK 219
+ + F + K+
Sbjct: 110 KIRAICFPILFLGETEIKQSLKDD 133
>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles
gambiae} PDB: 2il3_A* 2imk_A*
Length = 221
Score = 27.2 bits (61), Expect = 7.2
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 23/84 (27%)
Query: 154 VPAILD-----------LQYLVCFYATDDSWMYFSTFPKDSSK--CVDKVLY-----LRP 195
+P + D + YLV Y DDS +PKD K V+ L+ L
Sbjct: 55 IPVLDDNGTIITESHAIMIYLVTKYGKDDSL-----YPKDPVKQARVNSALHFESGVLFA 109
Query: 196 VVACLPAWFRFAQCLRRYKDTKEK 219
+ + F +D E
Sbjct: 110 RMRFIFERILFFGKSDIPEDRVEY 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.145 0.477
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,321,048
Number of extensions: 314613
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 28
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.2 bits)