BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18020
(434 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101
PE=1 SV=2
Length = 390
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 190/330 (57%), Gaps = 38/330 (11%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
++PT+ M I ++VD GKIY PYLH W S L GLI+ + F PP++S +
Sbjct: 89 VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS---RP 145
Query: 161 EPATNPTYNGNMASNAPYPTQSYMP-MPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIY 219
A+ P Y + P P SYMP MPG +PYP+ GY PN + P
Sbjct: 146 ISASYPPYQ----ATGP-PNTSYMPGMPGG--ISPYPS-------GYPPNPSGYPGCPYP 191
Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
P P P T S YP P PV T P+ GTI+++ I+ SL S
Sbjct: 192 PGGPYPATTS-----SQYPSQP----------PVTTVGPS----RDGTISEDTIRASLIS 232
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
AV DK+R +M E+ +AQ E+ LK+TE +L +G KL M R+D+E AE++++I LK
Sbjct: 233 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 292
Query: 340 EKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
+K+ EL L + ++E D+DE + TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 293 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 352
Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
VIDL+V+LK VR LSRKQF RAL+ K K
Sbjct: 353 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 382
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G Y+IP+C+WL+DT+P + PIC+V+PT+ M I ++VD GKIY PYLH W S L
Sbjct: 65 GNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDL 124
Query: 66 EGLIKTLASAFSALPPLYS 84
GLI+ + F PP++S
Sbjct: 125 LGLIQVMIVVFGDEPPVFS 143
>sp|Q61187|TS101_MOUSE Tumor susceptibility gene 101 protein OS=Mus musculus GN=Tsg101
PE=1 SV=2
Length = 391
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 188/330 (56%), Gaps = 37/330 (11%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
++PT+ M I ++VD GKIY PYLH W S+L LI+ + F PP++S T
Sbjct: 89 VKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVFSRPTVS 148
Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYP-GYNPNAAAAPSGSIY 219
A+ P Y + P P SYMP S + SAYP GY PN + P
Sbjct: 149 --ASYPPY----TATGP-PNTSYMPGMPSGI---------SAYPSGYPPNPSGYPGCPYP 192
Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
P+ P P T S YP PP V T P+ GTI+++ I+ SL S
Sbjct: 193 PAGPYPATTS-----SQYPSQPP----------VTTVGPS----RDGTISEDTIRASLIS 233
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
AV DK+R +M E+ AQ E+ LK+TE +L +G KL M R+D+E AE++++I LK
Sbjct: 234 AVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293
Query: 340 EKETELDEILAVLTEKTEV-DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
+K+ EL L + ++E D+DE + TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 294 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 353
Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
VIDL+V+LK VR LSRKQF RAL+ K K
Sbjct: 354 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 383
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G +Y+IP+C+WL+DT+P + PIC+V+PT+ M I ++VD GKIY PYLH W S+L
Sbjct: 65 GNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSEL 124
Query: 66 EGLIKTLASAFSALPPLYS 84
LI+ + F PP++S
Sbjct: 125 LELIQIMIVIFGEEPPVFS 143
>sp|Q6IRE4|TS101_RAT Tumor susceptibility gene 101 protein OS=Rattus norvegicus
GN=Tsg101 PE=1 SV=1
Length = 391
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 37/330 (11%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
++PT+ M I ++VD GKIY PYLH W S+L LI+ + F PP++S T
Sbjct: 89 VKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSELLELIQIMIVIFGEEPPVFSRPTVS 148
Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYP-GYNPNAAAAPSGSIY 219
A+ P Y A P SY+P S + SAYP GY PN + P
Sbjct: 149 --ASYPPYTA-----AGPPNTSYLPSMPSGI---------SAYPSGYPPNPSGYPGCPYP 192
Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS 279
P+ P P T S YP P PV T P + GTI+++ I+ SL S
Sbjct: 193 PAGPYPATTS-----SQYPSQP----------PVTTAGP----SRDGTISEDTIRASLIS 233
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
AV DK+R +M E+ AQ E+ LK+TE +L +G KL M R+D+E AE++++I LK
Sbjct: 234 AVSDKLRWRMKEEMDGAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 293
Query: 340 EKETELDEILAVLTEKTE-VDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398
+K+ EL L + ++E D+DE + TAP+YKQILN + EE A EDTI+Y+GEALRRG
Sbjct: 294 KKDEELSSALEKMENQSENNDIDEVIIPTAPLYKQILNLYAEENAIEDTIFYLGEALRRG 353
Query: 399 VIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
VIDL+V+LK VR LSRKQF RAL+ K K
Sbjct: 354 VIDLDVFLKHVRLLSRKQFQLRALMQKARK 383
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G +Y+IP+C+WL+DT+P + PIC+V+PT+ M I ++VD GKIY PYLH W S+L
Sbjct: 65 GNIYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHDWKHPRSEL 124
Query: 66 EGLIKTLASAFSALPPLYS 84
LI+ + F PP++S
Sbjct: 125 LELIQIMIVIFGEEPPVFS 143
>sp|Q66KB7|UEVLD_XENTR Ubiquitin-conjugating enzyme E2 variant 3 OS=Xenopus tropicalis
GN=uevld PE=2 SV=1
Length = 476
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G Y+IP+C+W++D+HP P+C+++P+ +M I V +++D G+IY PYL W+ S +
Sbjct: 65 GTTYNIPICLWILDSHPFAPPLCFLKPSGNMGIRVGRHIDAQGRIYLPYLQNWSHPKSTV 124
Query: 66 EGLIKTLASAFSALPPLYS 84
GLI+ +A F PLYS
Sbjct: 125 TGLIREMAVKFEEELPLYS 143
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
++P+ +M I V +++D G+IY PYL W+ S + GLI+ +A F PLYS
Sbjct: 89 LKPSGNMGIRVGRHIDAQGRIYLPYLQNWSHPKSTVTGLIREMAVKFEEELPLYS 143
>sp|Q3U1V6|UEVLD_MOUSE Ubiquitin-conjugating enzyme E2 variant 3 OS=Mus musculus GN=Uevld
PE=2 SV=1
Length = 471
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G Y+IP+ W++D+HP PIC+++PTA+M I+V ++VD G+IY PYL W+ S +
Sbjct: 65 GKTYNIPIRFWILDSHPFAPPICFLKPTANMEISVGKHVDAKGRIYLPYLQNWSHPKSAI 124
Query: 66 EGLIKTLASAFSALPPLYS 84
GLIK + + F PLYS
Sbjct: 125 VGLIKEMIAKFQEELPLYS 143
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
++PTA+M I+V ++VD G+IY PYL W+ S + GLIK + + F PLYS
Sbjct: 89 LKPTANMEISVGKHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELPLYS 143
>sp|Q8IX04|UEVLD_HUMAN Ubiquitin-conjugating enzyme E2 variant 3 OS=Homo sapiens GN=UEVLD
PE=1 SV=2
Length = 471
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G Y+IP+ W++D+HP PIC+++PTA+M I V ++VD G+IY PYL W+ S +
Sbjct: 65 GNTYNIPIRFWILDSHPFAPPICFLKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVI 124
Query: 66 EGLIKTLASAFSALPPLYSSRTKQE 90
GLIK + + F P+YS + E
Sbjct: 125 VGLIKEMIAKFQEELPMYSLSSSDE 149
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQ 160
++PTA+M I V ++VD G+IY PYL W+ S + GLIK + + F P+YS +
Sbjct: 89 LKPTANMGILVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELPMYSLSSSD 148
Query: 161 E 161
E
Sbjct: 149 E 149
>sp|Q6DBY5|UEVLD_DANRE Ubiquitin-conjugating enzyme E2 variant 3 OS=Danio rerio GN=uevld
PE=2 SV=1
Length = 471
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKL 65
G Y+IP+ +WL+D+ P PICY+RPT+ M I ++VD G+I+ P LH W S +
Sbjct: 65 GRSYNIPILLWLLDSFPFTPPICYLRPTSSMVIREGKHVDSKGRIHLPALHNWDHPKSSV 124
Query: 66 EGLIKTLASAFSALPPL--YSSRTKQEPATNPTYNGNI-------RPTADMRINV 111
L+ + F PPL SS P+ Y N+ RP +++++V
Sbjct: 125 NALLAEMIGKFEEEPPLGTKSSAHGDTPSNLLDYVSNLTITEGGNRPDQEVKVSV 179
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPL 153
+RPT+ M I ++VD G+I+ P LH W S + L+ + F PPL
Sbjct: 89 LRPTSSMVIREGKHVDSKGRIHLPALHNWDHPKSSVNALLAEMIGKFEEEPPL 141
>sp|Q9LHG8|ELC_ARATH Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1
Length = 398
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQ-NVDHTGKIYSPYLHTWTPQNSK 64
G+ Y+IPV IWL++++P H P YV PTADM I +V +G + PYL W +S
Sbjct: 81 GVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSLPYLQNWVYPSSN 140
Query: 65 LEGLIKTLASAFSALPPLY 83
L L+ L++AF+ PPLY
Sbjct: 141 LVDLVSDLSAAFARDPPLY 159
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 108/304 (35%), Gaps = 71/304 (23%)
Query: 184 MPMPGSNVNTP--------YPTYPPSAYPG-------YNPNAAAAPSGS---------IY 219
MP G N P YP +PP Y P+A PSG +Y
Sbjct: 77 MPFHGVTYNIPVIIWLLESYPRHPPCVYVNPTADMIIKRPHAHVTPSGLVSLPYLQNWVY 136
Query: 220 PS---YPTPGATPGAGGYSPYPLYP---------------------PGGSTPATPYPVPT 255
PS A P PLY P + + P P P
Sbjct: 137 PSSNLVDLVSDLSAAFARDP-PLYSRRRPQPPPPSPPTVYDSSLSRPPSADQSLPRPFP- 194
Query: 256 PSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKF 315
PSP S + H + A E R +N+ ++ +++ +
Sbjct: 195 PSPYGGGVSRVQVQHVHHQQQSDDAAEVFKRNAINKMVEMVHSDLVSMRRAREAEAEELL 254
Query: 316 KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV----------------- 358
L +R + EL + + E++ L++ L +++ T++
Sbjct: 255 SLQAGLKR---REDELNIGLKEMVEEKETLEQQLQIISMNTDILDSWVRENQGKTKNLVD 311
Query: 359 -DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417
DVD A + KQ+L + A ED IY + ++ + GV+ + YL+ VR LSR+QF
Sbjct: 312 LDVDNAFECGDTLSKQMLECTALDLAIEDAIYSLDKSFQDGVVPFDQYLRNVRLLSREQF 371
Query: 418 MFRA 421
RA
Sbjct: 372 FHRA 375
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 101 IRPTADMRINVSQ-NVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLY 154
+ PTADM I +V +G + PYL W +S L L+ L++AF+ PPLY
Sbjct: 105 VNPTADMIIKRPHAHVTPSGLVSLPYLQNWVYPSSNLVDLVSDLSAAFARDPPLY 159
>sp|Q9FFY6|ELCL_ARATH Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1
Length = 368
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINV-SQNVDHTGKIYSPYLHTWTPQN 62
G+ Y+IPV IWL++++P + P YV PT DM I NV +G + PYL W +
Sbjct: 79 FQGVSYNIPVVIWLLESYPQYPPCVYVNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPS 138
Query: 63 SKLEGLIKTLASAFSALPPLY 83
S L L L++AFS PPLY
Sbjct: 139 SNLVDLASHLSAAFSRDPPLY 159
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 124/319 (38%), Gaps = 67/319 (21%)
Query: 153 LYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMP--GSNVNTP--------YPTYPPSA 202
L SS T +P T + + S +PMP G + N P YP YPP
Sbjct: 44 LISSYTSLDPKTATFTHNDGRSVILLQADGTIPMPFQGVSYNIPVVIWLLESYPQYPPCV 103
Query: 203 YPG-------YNPNAAAAPSGS---------IYPS---YPTPGATPGAGGYSPYPLYPPG 243
Y P++ +PSG IYPS A P PLY
Sbjct: 104 YVNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDP-PLYSQR 162
Query: 244 ----------GSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQK 293
GS + P P A V I + ++M V + R++ +
Sbjct: 163 RPPPQPSPSIGSGYSRPLPPRQTDDAAEVYKKNAI-NRIVEMVHGDIVLMRSAREVETEG 221
Query: 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI-----------SFLKEKE 342
+ + + LK+ E E+N G F+ + EK LE+ + S+++E +
Sbjct: 222 LLSLQSD--LKRREEEINNG-------FKEMVIEKETLEQQLQVIAMNTDVLGSWIRENQ 272
Query: 343 TELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDL 402
+ ++L L + ++++ KQ+L + A ED +Y M ++ R G +
Sbjct: 273 GKAKDLLVDLDVDDSFECIDSLS------KQMLECTALDLAIEDVVYSMDKSFRDGSLPF 326
Query: 403 EVYLKQVRSLSRKQFMFRA 421
+ YL+ VR LSR+QF RA
Sbjct: 327 DQYLRNVRLLSREQFFHRA 345
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 101 IRPTADMRINV-SQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLY 154
+ PT DM I NV +G + PYL W +S L L L++AFS PPLY
Sbjct: 105 VNPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDPPLY 159
>sp|P25604|STP22_YEAST Suppressor protein STP22 of temperature-sensitive alpha-factor
receptor and arginine permease OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=STP22 PE=1
SV=3
Length = 385
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK----------TEVDVDEAVTT 366
+AR E I +K L +++ L+ + VLT + VD DE V +
Sbjct: 258 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVD-DEDVNS 316
Query: 367 TAPI----YKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFR 420
A Q+ N ++ A DTI + L RG I L+ ++KQ R L+R+QF+ R
Sbjct: 317 IAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVR 374
>sp|Q9XUS2|MED29_CAEEL Mediator of RNA polymerase II transcription subunit 29
OS=Caenorhabditis elegans GN=mdt-29 PE=1 SV=1
Length = 441
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 38/245 (15%)
Query: 183 YMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPS-------GSIYPSYPTPGATPGAGGYS 235
++ PGS + P P + P P + P GS+ P PG+T
Sbjct: 187 HIQQPGS-IQRPGSVLAPGSIPPGGPASQTGPQSIQVFGPGSVQP----PGSTQAPSSVQ 241
Query: 236 PYPLYPPGG-STPATPYPVPTPSPAPAVTSGGTIT------------DEHIKMS------ 276
P + PG PA+ P + P P+ SG T+ +E I+M
Sbjct: 242 PASTFNPGSIQAPASQQPPASVQPPPSAASGSTVAGAQSSKEPLKPNEEQIRMVQDPVDL 301
Query: 277 LKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQ-GKFKLARMFERIDKEKAELERSI 335
+++ V+ +R + E + E + ++ E E+N+ GK + +R E++R++
Sbjct: 302 VRNLVQKDLRNSLVEMNKRGAELVR--QKQEGEVNEDGKAQYSRATNDFHAVCDEIDRTL 359
Query: 336 SFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMG--- 392
+ + E +L ++ V +++ D+D V + + + NT + +DTI +
Sbjct: 360 TTVLETAKQLSKLDKVFFDRSSRDLDGEVMVNS-VQNFVDNTEIVQRMFDDTIGSVTSSM 418
Query: 393 EALRR 397
E++RR
Sbjct: 419 ESMRR 423
>sp|Q54LJ3|TS101_DICDI ESCRT-I complex subunit tsg101 OS=Dictyostelium discoideum
GN=tsg101 PE=3 SV=1
Length = 478
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRI-NVSQNVDHTGKIYSPYLHTWTPQN 62
G+ Y++P+ +W+ +P P + PT +MRI +V+ G +Y PY+ +W+ N
Sbjct: 85 FKGINYYLPIIVWVPLNYPQEFPTMVLDPTPEMRIVKNHHHVNLQGLVYHPYISSWS-SN 143
Query: 63 SKLE 66
S +E
Sbjct: 144 STME 147
>sp|Q5VUA4|ZN318_HUMAN Zinc finger protein 318 OS=Homo sapiens GN=ZNF318 PE=1 SV=2
Length = 2279
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 195 YPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVP 254
YPT PS +P P+ + S P P P GS PA PV
Sbjct: 805 YPTSQPSNHPVPEPHRIMPITKQATRSRPNLRVIPTVTPDKPKQKESLRGSIPAAQVPVQ 864
Query: 255 TPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQE------EIEILKQTEN 308
P+ + I+DE + S K V ++ + N+++ + ++ E+E L + +
Sbjct: 865 VSIPSLIRYNPEKISDEKNRASQKQKVIEEREKLKNDREARQKKMYYLRTELERLHKQQG 924
Query: 309 ELNQGK------------FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352
E+ + K +++R+ + I K+ AEL + ++K++ELD++ +L
Sbjct: 925 EMLRKKRREKDGHKDPLLVEVSRLQDNIMKDIAELRQEAEEAEKKQSELDKVAQIL 980
>sp|Q99PP2|ZN318_MOUSE Zinc finger protein 318 (Fragment) OS=Mus musculus GN=Znf318 PE=1
SV=2
Length = 2064
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 26/209 (12%)
Query: 166 PTYNGNMASNAPYPT-QSYMPMPGSNVNTPYPTYP---PSAYPGYNPNAAAAPSGSIYPS 221
P Y G++ +A + + YM S +P YP P ++P +P+ + S
Sbjct: 626 PNYQGSVIPSASFDAYRHYMAYAASR----WPMYPASQPPSHPLSDPHRLLPVTKQAARS 681
Query: 222 YPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAV 281
P P P P GS PV P+ + I+DE + S K V
Sbjct: 682 RPNLRVIPTVTPAKPKQEIPVLGSISVKRIPVRVSIPSLIKYNPKKISDEKNRASQKQKV 741
Query: 282 EDKIRRKMNEQKVQAQE------EIEILKQTENELNQGK------------FKLARMFER 323
++ + EQ+ + ++ E+E L + + E+ + K +++R+ +
Sbjct: 742 IEEREKLKTEQEARQKKMFYLTTELERLHKQQGEMLRKKRREKDGHKDPLLMEVSRLQDS 801
Query: 324 IDKEKAELERSISFLKEKETELDEILAVL 352
I K+ AEL + ++K++ELD++ +L
Sbjct: 802 IMKDIAELHKETEEAEKKQSELDKVAQIL 830
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 82/215 (38%), Gaps = 53/215 (24%)
Query: 179 PTQSYMPMPGSNVNTPYPTYPP-----SAYPG-----------YNPNAAAAPSG----SI 218
P Y PMPG P P PP YPG +NPN P G +
Sbjct: 443 PMYGYPPMPG--YGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGM 500
Query: 219 YPSYPTPGATPGAGGYSPYPLYPPGGSTPAT----------PYPVPTPS--PAPAVTSGG 266
P P PGA PG YP+ P G PA P PV P PA ++ GG
Sbjct: 501 PPQVPYPGA-PG------YPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGG 553
Query: 267 TITDEHIKMSLKSAVEDKI------RRKMNEQKVQAQEEI-EILKQTENELNQGKFKLAR 319
+ + + + ++ R EQK E + ++ +T+ EL GK
Sbjct: 554 QMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPEL-AGKI-TGM 611
Query: 320 MFERIDKEKAELERSISFLKEKETELDEILAVLTE 354
+ E + E L S L+EK +DE L VL E
Sbjct: 612 LLEMDNAELLHLVESQPALQEK---VDEALRVLAE 643
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 82/215 (38%), Gaps = 53/215 (24%)
Query: 179 PTQSYMPMPGSNVNTPYPTYPP-----SAYPG-----------YNPNAAAAPSG----SI 218
P Y PMPG P P PP YPG +NPN P G +
Sbjct: 443 PMYGYPPMPG--YGQPMPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGM 500
Query: 219 YPSYPTPGATPGAGGYSPYPLYPPGGSTPAT----------PYPVPTPS--PAPAVTSGG 266
P P PGA PG YP+ P G PA P PV P PA ++ GG
Sbjct: 501 PPQVPYPGA-PG------YPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGG 553
Query: 267 TITDEHIKMSLKSAVEDKI------RRKMNEQKVQAQEEI-EILKQTENELNQGKFKLAR 319
+ + + + ++ R EQK E + ++ +T+ EL GK
Sbjct: 554 QMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPEL-AGKI-TGM 611
Query: 320 MFERIDKEKAELERSISFLKEKETELDEILAVLTE 354
+ E + E L S L+EK +DE L VL E
Sbjct: 612 LLEMDNAELLHLVESQPALQEK---VDEALRVLAE 643
>sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens GN=LGALS3 PE=1 SV=5
Length = 250
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 16/215 (7%)
Query: 155 SSRTKQEPATNPTYNGNMASNAP-YPTQSY-MPMPGSNVNTPYPTY-PPSAYPGYNPNAA 211
S P P GN + A YP SY PG YP PP AYPG
Sbjct: 12 SGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYP 71
Query: 212 AAPSGSIYPSYPT-PGATPGAGGYSPYPLYPPGG--STPATPYPVPTPSPAPAVTSGGTI 268
AP+ +YP P+ PGA P +G S YP G PA P VP P P GG +
Sbjct: 72 GAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLP----GGVV 127
Query: 269 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 328
I + ++ N + Q ++ N+ ++ ++D
Sbjct: 128 PRMLIT------ILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNW 181
Query: 329 AELERSISFLKEKETELDEILAVLTEKTEVDVDEA 363
ER F E + V + +V V++A
Sbjct: 182 GREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDA 216
>sp|Q91VN4|CHCH6_MOUSE Coiled-coil-helix-coiled-coil-helix domain-containing protein 6,
mitochondrial OS=Mus musculus GN=Chchd6 PE=2 SV=2
Length = 273
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 41/185 (22%)
Query: 189 SNVNTPYPTYPPSA----YPGYNPNAAA------APSGSIYPSYPTPGATPGAGGYSPYP 238
S VN PSA PG+ P+++A P+ S+ P+ P P +P P
Sbjct: 33 SVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISV-PTVPAP--------TTPVP 83
Query: 239 LYP-------PGGST--PATPYPVPTPSPAPAVTSGGTITDEHIKMSLKS------AVED 283
P PGG+ P T VP+ SGG + +K LK AV+D
Sbjct: 84 TAPSSSVRGLPGGTCKGPLTDVKVPS------AESGGGLQSSAVKEDLKKFQQEQLAVQD 137
Query: 284 KIRRKMNEQKVQAQEEIEI-LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
++ R ++K A++ ++ L + + L + + AR+ ++ +AEL R +F KE++
Sbjct: 138 EMVRVAKKEKEAAEKHLKASLPKKKASLTHEQQQSARLARELEDREAELSRRDTFYKEQQ 197
Query: 343 TELDE 347
+ E
Sbjct: 198 GRIQE 202
>sp|O75112|LDB3_HUMAN LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2
Length = 727
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 21/91 (23%)
Query: 177 PYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP 236
P P +Y P PG+N +P P Y PS P Y P+ P P TP SP
Sbjct: 410 PVPASTYSPSPGANY-SPTP-YTPSPAPAYTPS-------------PAPAYTP-----SP 449
Query: 237 YPLYPPGGSTPATPYPVPTPSPAPAVT-SGG 266
P Y P + TP P P +PAP+V SGG
Sbjct: 450 VPTYTPSPAPAYTPSPAPNYNPAPSVAYSGG 480
>sp|Q9VT65|CANB_DROME Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1 SV=2
Length = 925
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 69/169 (40%), Gaps = 31/169 (18%)
Query: 173 ASNAPYPTQSYMPMPGS---------NVNT-PYPTYPPSAYPGYNPNAAAAPSGSI-YPS 221
A +AP P S P PGS NV++ PYPT P + YP P P ++ YP+
Sbjct: 91 APSAPAPYPSATPYPGSGLYPSLPSANVSSLPYPTAPMAPYPTGMPYPTGMPQPNLPYPA 150
Query: 222 YPT---PGATPGAGG----YSPYPLYPP---GGSTPATPYP-VPTPSPAPAVTSGGTITD 270
P P A PG G Y+P P P PA PYP P P AP ++
Sbjct: 151 APLAPYPSAMPGLPGMPMPYAPMPTSPAPQHNIGFPALPYPTAPPPESAPTQEEEPSVGV 210
Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLAR 319
+ + E++ M + A+ +N +++G F+ R
Sbjct: 211 AELSFTSVKVPENQNMFWMGRKATSAR---------QNSVSKGDFQSLR 250
>sp|Q5BAZ5|INO80_EMENI Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ino80
PE=3 SV=1
Length = 1612
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 174 SNAPYPTQSYMPMPGS----NVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTP---- 225
+ +P+ + + P+PG+ N P P +P P Y ++AA P YP P
Sbjct: 54 ARSPHYSHAPSPLPGALPPLNGGAPTPAHPSDPSPQYQAHSAAG-----TPQYPLPRPYS 108
Query: 226 GATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVT 263
G+ A G SPY G STP+ +P P V+
Sbjct: 109 GSLLPASGTSPY-----GPSTPSHAHPSSRPDSHAHVS 141
>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein 37C OS=Homo sapiens
GN=VPS37C PE=1 SV=2
Length = 355
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 179 PTQSYMPMPGSNVNTPYPTYPPSAY-PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY 237
P +S P PG YP P A PGY APS P YP P GG PY
Sbjct: 262 PQRSMPPRPG------YPGTPMGASGPGYPLRGGRAPS----PGYPQQSPYPATGGKPPY 311
Query: 238 PLYPPGGSTPATPYP 252
P+ P S P P P
Sbjct: 312 PIQPQLPSFPGQPQP 326
>sp|Q9JKS4|LDB3_MOUSE LIM domain-binding protein 3 OS=Mus musculus GN=Ldb3 PE=1 SV=1
Length = 723
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 177 PYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP 236
P P SY P PG+N +P P Y PS P Y P+ P P TP SP
Sbjct: 406 PVPASSYSPSPGANY-SPTP-YTPSPAPAYTPS-------------PAPTYTP-----SP 445
Query: 237 YPLYPPGGSTPATPYPVPTPSPAP-AVTSGG 266
P Y P + TP P P +P P A SGG
Sbjct: 446 APTYSPSPAPAYTPSPAPNYTPTPSAAYSGG 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,042,239
Number of Sequences: 539616
Number of extensions: 8199332
Number of successful extensions: 56776
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 2291
Number of HSP's that attempted gapping in prelim test: 39959
Number of HSP's gapped (non-prelim): 10848
length of query: 434
length of database: 191,569,459
effective HSP length: 120
effective length of query: 314
effective length of database: 126,815,539
effective search space: 39820079246
effective search space used: 39820079246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)