Query psy18020
Match_columns 434
No_of_seqs 186 out of 372
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 20:28:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p22_A Suppressor protein STP2 100.0 1.1E-35 3.9E-40 268.6 17.9 154 276-430 19-173 (174)
2 3obq_A Tumor susceptibility ge 100.0 9.1E-30 3.1E-34 225.5 6.8 85 2-86 62-146 (146)
3 2f6m_A Suppressor protein STP2 100.0 1.4E-28 4.9E-33 186.3 9.1 63 368-430 2-64 (65)
4 3r3q_A Suppressor protein STP2 99.8 2.4E-21 8.2E-26 174.4 4.7 80 2-81 73-159 (162)
5 3obq_A Tumor susceptibility ge 99.5 1.6E-15 5.4E-20 134.2 1.0 58 99-156 88-145 (146)
6 3iv1_A Tumor susceptibility ge 99.5 2.1E-13 7.3E-18 106.6 9.5 74 276-349 3-76 (78)
7 3r3q_A Suppressor protein STP2 98.8 1.9E-09 6.5E-14 96.8 2.0 59 92-152 95-159 (162)
8 2gjd_A Ubiquitin-conjugating e 97.9 2.5E-05 8.5E-10 69.6 7.1 62 11-78 58-122 (157)
9 2grr_A Ubiquitin-conjugating e 97.8 2.2E-05 7.5E-10 70.3 6.6 67 4-78 56-125 (161)
10 2aak_A UBC1, ubiquitin conjuga 97.8 3.7E-05 1.3E-09 68.1 7.7 62 11-78 53-115 (152)
11 3iv1_A Tumor susceptibility ge 97.8 8.6E-05 2.9E-09 58.0 8.3 67 280-356 3-69 (78)
12 1z2u_A Ubiquitin-conjugating e 97.7 5.2E-05 1.8E-09 67.0 7.2 67 4-78 48-115 (150)
13 2c4o_A Ubiquitin-conjugating e 97.7 4.7E-05 1.6E-09 68.4 6.8 67 4-78 63-130 (165)
14 1jat_A Ubiquitin-conjugating e 97.7 6.6E-05 2.3E-09 66.7 7.0 63 10-78 53-116 (155)
15 2e2c_A Ubiquitin conjugating e 97.7 7.3E-05 2.5E-09 66.5 7.2 67 4-78 53-120 (156)
16 1c4z_D UBCH7, ubiquitin conjug 97.7 8.4E-05 2.9E-09 65.9 7.3 67 4-78 46-114 (154)
17 2c2v_B Ubiquitin-conjugating e 97.6 6.5E-05 2.2E-09 66.7 6.4 67 4-78 49-116 (154)
18 1y8x_A Ubiquitin-conjugating e 97.6 8.9E-05 3E-09 66.3 6.9 67 4-78 48-115 (160)
19 2a7l_A Hypothetical ubiquitin- 97.6 0.00013 4.3E-09 63.6 7.5 62 11-76 73-135 (136)
20 2nvu_C NEDD8-conjugating enzym 97.6 9.4E-05 3.2E-09 67.4 7.0 67 4-78 68-135 (180)
21 1ayz_A UBC2, ubiquitin-conjuga 97.6 0.00011 3.7E-09 66.3 7.2 67 4-78 48-115 (169)
22 1zdn_A Ubiquitin-conjugating e 97.6 7.6E-05 2.6E-09 66.5 5.7 67 4-78 57-124 (158)
23 3h8k_A Ubiquitin-conjugating e 97.6 0.00012 4.2E-09 65.5 7.1 67 4-78 48-128 (164)
24 2bep_A Ubiquitin-conjugating e 97.5 0.00016 5.4E-09 64.5 7.4 67 4-78 55-123 (159)
25 2fo3_A Ubiquitin-conjugating e 97.5 0.00017 5.7E-09 61.8 7.3 63 11-78 55-118 (125)
26 2h2y_A Ubiquitin-conjugating e 97.5 0.00019 6.4E-09 62.4 7.6 63 11-78 69-132 (136)
27 1wzv_A Ubiquitin-conjugating e 97.5 0.00015 5E-09 64.4 6.9 62 11-78 53-116 (155)
28 2r0j_A Ubiquitin carrier prote 97.5 0.0002 6.8E-09 63.1 7.0 62 11-78 50-112 (149)
29 4gpr_A Ubiquitin-conjugating e 97.5 0.0002 6.7E-09 63.3 6.9 62 11-78 53-115 (151)
30 3fn1_B NEDD8-conjugating enzym 97.4 0.00025 8.5E-09 63.7 7.3 67 4-78 58-131 (167)
31 1fxt_A Ubiquitin-conjugating e 97.4 0.0002 6.9E-09 63.1 6.1 62 11-78 51-114 (149)
32 1i7k_A Ubiquitin-conjugating e 97.4 0.0003 1E-08 64.0 7.1 62 11-78 79-141 (179)
33 2q0v_A Ubiquitin-conjugating e 97.4 0.00023 7.7E-09 63.4 6.1 67 4-78 69-138 (156)
34 2ucz_A UBC7, ubiquitin conjuga 97.3 0.00035 1.2E-08 62.6 7.0 62 11-78 54-129 (165)
35 3rcz_B SUMO-conjugating enzyme 97.3 0.00039 1.3E-08 62.3 7.3 67 4-78 59-128 (163)
36 2f4w_A Ubiquitin-conjugating e 97.3 0.00046 1.6E-08 63.2 6.9 66 4-79 58-127 (187)
37 2ayv_A Ubiquitin-conjugating e 97.2 0.00048 1.7E-08 61.8 6.8 62 11-78 70-132 (166)
38 3o2u_A NEDD8-conjugating enzym 97.2 0.00048 1.6E-08 63.2 6.8 67 4-78 77-144 (190)
39 2awf_A Ubiquitin-conjugating e 97.2 0.00067 2.3E-08 61.3 7.6 62 11-78 67-142 (172)
40 1yh2_A HSPC150 protein similar 97.2 0.00054 1.9E-08 61.6 6.9 62 11-78 53-119 (169)
41 3rz3_A Ubiquitin-conjugating e 97.2 0.00059 2E-08 62.2 7.1 67 4-78 52-132 (183)
42 2hlw_A Ubiquitin-conjugating e 97.1 0.00081 2.8E-08 60.6 7.3 67 4-78 83-153 (170)
43 2a4d_A Ubiquitin-conjugating e 97.1 0.00088 3E-08 59.8 7.4 67 4-78 73-143 (160)
44 3bzh_A Ubiquitin-conjugating e 97.1 0.00085 2.9E-08 61.8 7.4 62 11-78 97-159 (194)
45 1jat_B Ubiquitin-conjugating e 97.1 0.00069 2.4E-08 58.9 6.0 67 4-78 54-123 (138)
46 1tte_A Ubiquitin-conjugating e 97.1 0.00094 3.2E-08 62.5 7.0 62 11-78 52-115 (215)
47 2y9m_A Ubiquitin-conjugating e 97.0 0.0009 3.1E-08 60.4 6.5 63 11-78 67-132 (172)
48 1yrv_A Ubiquitin-conjugating l 97.0 0.00078 2.7E-08 60.7 5.9 62 11-78 72-137 (169)
49 1zuo_A Hypothetical protein LO 97.0 0.0006 2E-08 62.4 5.1 64 10-79 90-156 (186)
50 3ceg_A Baculoviral IAP repeat- 97.0 0.0016 5.5E-08 64.3 8.2 72 11-82 129-208 (323)
51 3k9o_A Ubiquitin-conjugating e 96.9 0.002 6.8E-08 59.5 7.4 67 4-78 52-120 (201)
52 4ds2_A Ubiquitin-conjugating e 96.9 0.0021 7.2E-08 57.6 7.3 62 11-78 71-134 (167)
53 2f4z_A Tgtwinscan_2721 - E2 do 96.8 0.0025 8.4E-08 58.6 7.4 62 11-78 94-157 (193)
54 4ddg_A Ubiquitin-conjugating e 96.5 0.0041 1.4E-07 63.3 7.7 67 4-78 47-114 (399)
55 2z5d_A Ubiquitin-conjugating e 96.5 0.0016 5.5E-08 59.1 3.7 61 11-77 70-133 (179)
56 1yf9_A Ubiquitin carrier prote 96.5 0.0018 6E-08 58.4 3.8 61 11-77 57-120 (171)
57 2pwq_A Ubiquitin conjugating e 96.4 0.0035 1.2E-07 58.6 5.8 62 11-78 72-135 (216)
58 3e46_A Ubiquitin-conjugating e 96.3 0.007 2.4E-07 57.9 7.4 62 11-78 109-172 (253)
59 2p22_C Protein SRN2; endosome, 96.3 0.082 2.8E-06 48.4 13.9 121 296-431 67-189 (192)
60 2onu_A Ubiquitin-conjugating e 96.2 0.0036 1.2E-07 55.2 4.5 61 11-77 48-111 (152)
61 2p22_A Suppressor protein STP2 95.0 0.089 3.1E-06 47.3 8.8 74 280-353 12-90 (174)
62 1deq_A Fibrinogen (alpha chain 94.6 0.42 1.4E-05 47.6 13.1 111 284-412 71-188 (390)
63 2jee_A YIIU; FTSZ, septum, coi 94.3 0.45 1.5E-05 37.3 10.1 35 317-351 39-73 (81)
64 1m9i_A Annexin VI; calcium-bin 93.8 0.02 7E-07 61.9 2.0 110 279-395 383-500 (672)
65 3ghg_A Fibrinogen alpha chain; 93.3 0.92 3.1E-05 46.9 13.0 69 283-352 67-136 (562)
66 2z6o_A UFM1-conjugating enzyme 92.5 0.097 3.3E-06 46.7 4.0 58 8-69 82-143 (172)
67 1m9i_A Annexin VI; calcium-bin 92.0 0.031 1.1E-06 60.5 0.3 110 279-395 40-157 (672)
68 2hyv_A Annexin A2; calcium-bin 91.6 0.061 2.1E-06 52.7 1.9 77 279-355 23-107 (308)
69 2jee_A YIIU; FTSZ, septum, coi 91.4 3.7 0.00013 32.0 11.5 47 297-343 33-79 (81)
70 1axn_A Annexin III; annexin fa 91.4 0.06 2E-06 53.1 1.6 77 279-355 39-123 (323)
71 2v66_B Nuclear distribution pr 91.2 2.9 9.8E-05 34.7 11.3 48 303-350 26-73 (111)
72 1hm6_A Annexin 1; phospholipid 90.9 0.055 1.9E-06 53.9 0.8 128 279-407 63-223 (346)
73 2zhj_A Annexin A4; zynogen gra 90.9 0.072 2.5E-06 52.5 1.6 129 279-408 38-199 (322)
74 1yii_A Annexin A5, annexin V, 90.5 0.12 4E-06 50.9 2.7 77 279-355 35-119 (320)
75 2ii2_A Alpha-11 giardin; helix 90.3 0.1 3.5E-06 51.1 2.1 136 271-408 11-181 (310)
76 1cii_A Colicin IA; bacteriocin 89.8 6 0.0002 40.3 14.2 111 281-396 350-480 (602)
77 1w3w_A Annexin A8; coagulation 89.7 0.1 3.4E-06 51.6 1.5 110 279-395 42-159 (327)
78 3oja_B Anopheles plasmodium-re 88.7 1.6 5.5E-05 45.7 10.0 75 320-394 457-531 (597)
79 1wt6_A Myotonin-protein kinase 88.6 4.9 0.00017 31.2 9.9 40 301-344 31-70 (81)
80 1dm5_A Annexin XII E105K mutan 88.4 0.18 6E-06 49.5 2.2 75 279-353 33-115 (315)
81 2v71_A Nuclear distribution pr 88.3 3.7 0.00013 37.2 10.7 34 315-348 91-124 (189)
82 4evf_A Alpha-1 giardin, giardi 87.8 0.22 7.6E-06 48.3 2.5 75 279-354 21-104 (295)
83 3a7p_A Autophagy protein 16; c 87.1 13 0.00044 32.4 12.9 38 315-352 99-137 (152)
84 1d7m_A Cortexillin I; coiled-c 86.9 9.6 0.00033 30.1 10.7 54 297-350 10-63 (101)
85 3g67_A Methyl-accepting chemot 86.8 18 0.0006 33.2 14.7 34 376-415 94-127 (213)
86 3u1c_A Tropomyosin alpha-1 cha 86.8 8.9 0.0003 31.0 11.2 30 283-312 5-34 (101)
87 1n00_A Annexin GH1; membrane-b 86.6 0.13 4.4E-06 50.6 -0.0 110 279-395 37-154 (321)
88 3cvf_A Homer-3, homer protein 86.3 5.7 0.00019 30.9 9.2 67 284-350 10-76 (79)
89 2dfs_A Myosin-5A; myosin-V, in 85.9 2.4 8.2E-05 48.3 9.9 25 62-86 517-541 (1080)
90 3cve_A Homer protein homolog 1 85.9 9.8 0.00034 29.0 10.2 60 286-345 6-65 (72)
91 3trt_A Vimentin; cytoskeleton, 85.8 9.8 0.00033 28.9 11.0 64 281-344 10-74 (77)
92 1pl5_A Regulatory protein SIR4 85.3 8.3 0.00029 31.5 10.1 74 276-349 56-129 (142)
93 1i84_S Smooth muscle myosin he 85.1 4 0.00014 46.9 11.3 24 62-86 548-571 (1184)
94 2w83_C C-JUN-amino-terminal ki 84.6 12 0.0004 28.8 10.0 49 302-350 20-68 (77)
95 3kpa_A Probable ubiquitin fold 84.6 0.36 1.2E-05 42.3 1.8 50 5-60 81-130 (168)
96 1t3j_A Mitofusin 1; coiled coi 84.1 1.7 5.9E-05 35.1 5.5 16 317-332 52-67 (96)
97 1ic2_A Tropomyosin alpha chain 84.1 13 0.00043 28.7 10.9 30 285-314 4-33 (81)
98 1nyh_A Regulatory protein SIR4 84.1 9.7 0.00033 31.9 10.1 74 276-349 80-153 (166)
99 4dvz_A Cytotoxicity-associated 83.9 28 0.00095 34.9 14.9 94 324-419 421-526 (569)
100 3u59_A Tropomyosin beta chain; 83.7 15 0.00051 29.5 11.2 30 283-312 5-34 (101)
101 1deq_A Fibrinogen (alpha chain 83.4 8.4 0.00029 38.3 11.2 21 358-378 155-175 (390)
102 2v71_A Nuclear distribution pr 83.3 9 0.00031 34.6 10.6 19 382-400 130-148 (189)
103 3hnw_A Uncharacterized protein 82.9 11 0.00039 32.2 10.6 9 337-345 121-129 (138)
104 3uux_B Mitochondrial division 82.8 8 0.00027 36.1 10.2 40 315-354 180-219 (242)
105 3bas_A Myosin heavy chain, str 81.9 17 0.00058 28.6 11.4 57 296-352 26-82 (89)
106 3na7_A HP0958; flagellar bioge 81.3 35 0.0012 31.8 18.9 102 293-394 27-133 (256)
107 3ghg_A Fibrinogen alpha chain; 81.1 5.2 0.00018 41.5 9.0 112 294-412 67-185 (562)
108 2pnv_A Small conductance calci 81.0 3.2 0.00011 28.5 5.1 36 317-352 7-42 (43)
109 1m1j_A Fibrinogen alpha subuni 81.0 13 0.00045 37.8 11.7 92 303-412 88-186 (491)
110 4h22_A Leucine-rich repeat fli 80.7 21 0.00073 28.9 12.0 59 294-352 26-84 (103)
111 3vkg_A Dynein heavy chain, cyt 80.1 35 0.0012 43.3 17.3 36 303-338 1943-1978(3245)
112 2ve7_A Kinetochore protein HEC 79.8 1.6 5.5E-05 42.7 4.7 40 372-413 270-309 (315)
113 2f6m_B Vacuolar protein sortin 79.5 5.1 0.00017 33.1 6.8 47 367-413 20-66 (109)
114 2p22_B Vacuolar protein sortin 79.1 5.2 0.00018 33.5 6.8 47 367-413 29-75 (118)
115 4ani_A Protein GRPE; chaperone 79.0 17 0.00058 33.5 11.0 81 295-379 74-154 (213)
116 2dfs_A Myosin-5A; myosin-V, in 78.8 18 0.0006 41.2 13.4 6 372-377 1037-1042(1080)
117 3mxz_A Tubulin-specific chaper 78.7 23 0.00077 29.5 10.7 49 315-363 49-97 (116)
118 3mq9_A Bone marrow stromal ant 78.6 29 0.00098 35.0 13.9 14 2-15 111-124 (471)
119 2p22_C Protein SRN2; endosome, 78.0 23 0.00078 32.0 11.4 24 289-312 88-111 (192)
120 1a4p_A S100A10; S100 family, E 77.9 2.5 8.6E-05 33.3 4.5 18 397-414 63-80 (96)
121 2ke4_A CDC42-interacting prote 77.2 12 0.0004 30.2 8.3 27 327-353 63-89 (98)
122 4aj5_1 SKA3, spindle and kinet 77.1 23 0.00078 28.6 9.8 80 327-416 7-86 (101)
123 3o0z_A RHO-associated protein 77.1 24 0.00082 31.2 10.9 44 302-345 31-74 (168)
124 1psr_A Psoriasin, S100A7; EF-h 76.9 2.9 0.0001 33.1 4.7 72 338-414 5-83 (100)
125 3mq9_A Bone marrow stromal ant 76.8 22 0.00075 35.9 12.4 29 322-350 432-460 (471)
126 1x79_B RAB GTPase binding effe 76.6 15 0.00052 30.4 8.9 43 303-345 61-103 (112)
127 2caz_B Vacuolar protein sortin 76.0 6.6 0.00022 34.3 6.8 47 367-413 37-83 (155)
128 3nmd_A CGMP dependent protein 75.8 12 0.00042 28.5 7.4 8 303-310 21-28 (72)
129 3q8t_A Beclin-1; autophagy, AT 75.5 29 0.001 27.7 11.5 71 314-395 20-90 (96)
130 1yc9_A VCEC, multidrug resista 75.4 44 0.0015 32.7 14.0 45 354-398 392-436 (442)
131 3t97_C Nuclear pore glycoprote 74.9 9.7 0.00033 28.3 6.6 37 317-353 17-53 (64)
132 3hh0_A Transcriptional regulat 74.4 4.7 0.00016 34.7 5.6 58 318-383 79-136 (146)
133 2w83_C C-JUN-amino-terminal ki 74.2 21 0.00073 27.3 8.4 48 302-349 27-74 (77)
134 3swf_A CGMP-gated cation chann 73.7 18 0.00063 27.6 8.0 42 303-344 9-50 (74)
135 3oja_A Leucine-rich immune mol 73.6 18 0.00061 36.7 10.8 15 335-349 444-458 (487)
136 3d5k_A OPRM, outer membrane pr 73.4 43 0.0015 33.3 13.5 45 354-398 405-449 (474)
137 3chj_A Alpha-14 giardin; calci 73.4 0.41 1.4E-05 47.4 -1.6 74 280-353 31-112 (337)
138 1ez3_A Syntaxin-1A; three heli 73.3 21 0.00073 29.2 9.4 59 294-352 22-80 (127)
139 1wt6_A Myotonin-protein kinase 73.2 30 0.001 26.8 10.1 28 298-325 21-48 (81)
140 3ibp_A Chromosome partition pr 73.1 9.1 0.00031 36.9 7.6 72 318-390 69-140 (302)
141 3swy_A Cyclic nucleotide-gated 72.8 17 0.00058 25.2 7.0 36 305-340 9-44 (46)
142 1t3j_A Mitofusin 1; coiled coi 72.8 10 0.00034 30.6 6.7 12 307-318 31-42 (96)
143 3he5_B Synzip2; heterodimeric 72.7 17 0.0006 24.6 6.8 17 310-326 22-38 (52)
144 1k2h_A S100A1, S-100 protein, 72.7 7.8 0.00027 29.2 6.1 76 338-414 4-83 (93)
145 1go4_E MAD1 (mitotic arrest de 72.4 32 0.0011 27.8 9.7 21 332-352 74-94 (100)
146 3he4_A Synzip6; heterodimeric 71.8 15 0.0005 25.4 6.3 35 315-349 20-54 (56)
147 2dq3_A Seryl-tRNA synthetase; 71.4 12 0.00042 37.9 8.8 75 319-394 30-104 (425)
148 2wt7_B Transcription factor MA 70.7 38 0.0013 26.9 10.1 34 308-341 51-84 (90)
149 3pik_A Cation efflux system pr 70.5 55 0.0019 32.0 13.4 44 355-398 397-440 (446)
150 3oja_A Leucine-rich immune mol 70.1 37 0.0013 34.4 12.2 48 303-350 419-466 (487)
151 1axn_A Annexin III; annexin fa 70.0 2.4 8.2E-05 41.5 3.0 74 279-352 111-204 (323)
152 1s94_A S-syntaxin; three helix 70.0 26 0.0009 30.7 9.7 63 290-352 49-111 (180)
153 4dci_A Uncharacterized protein 69.8 51 0.0018 28.5 11.1 30 317-346 75-104 (150)
154 1ci6_A Transcription factor AT 69.8 16 0.00055 26.8 6.8 34 317-350 28-61 (63)
155 1ek9_A Outer membrane protein 69.7 83 0.0028 30.4 14.8 43 354-396 363-405 (428)
156 3zwh_A Protein S100-A4; Ca-bin 69.7 16 0.00055 29.2 7.5 70 338-416 8-89 (104)
157 2dq0_A Seryl-tRNA synthetase; 69.5 16 0.00056 37.3 9.3 29 323-351 73-101 (455)
158 1wle_A Seryl-tRNA synthetase; 68.7 29 0.00098 36.0 11.0 61 292-352 78-149 (501)
159 1gmj_A ATPase inhibitor; coile 67.9 42 0.0014 26.2 9.9 7 301-307 40-46 (84)
160 2k48_A Nucleoprotein; viral pr 67.6 39 0.0013 27.4 9.1 19 334-352 83-101 (107)
161 4dvy_P Cytotoxicity-associated 67.5 1.2E+02 0.0043 31.6 15.4 116 303-419 660-786 (876)
162 3qne_A Seryl-tRNA synthetase, 67.2 13 0.00043 38.6 7.8 60 292-351 41-103 (485)
163 4gkw_A Spindle assembly abnorm 66.5 59 0.002 27.5 13.4 32 382-413 115-146 (167)
164 3i00_A HIP-I, huntingtin-inter 66.2 56 0.0019 27.2 11.4 9 281-289 16-24 (120)
165 3ghg_B Fibrinogen beta chain; 66.2 52 0.0018 33.6 11.9 31 284-314 99-129 (461)
166 2fxo_A Myosin heavy chain, car 66.2 57 0.002 27.2 12.0 23 373-395 98-120 (129)
167 3nso_A Protein S100-A3; EF-han 65.9 11 0.00036 30.3 5.7 69 338-415 5-85 (101)
168 3vkg_A Dynein heavy chain, cyt 65.8 79 0.0027 40.2 15.6 46 296-341 1922-1967(3245)
169 3a7o_A Autophagy protein 16; c 65.6 41 0.0014 25.3 9.1 30 311-340 45-74 (75)
170 3tnu_A Keratin, type I cytoske 65.4 43 0.0015 28.0 9.7 13 296-308 50-62 (131)
171 4fla_A Regulation of nuclear P 64.8 69 0.0024 27.7 12.2 67 286-352 81-147 (152)
172 3bas_A Myosin heavy chain, str 64.7 49 0.0017 25.9 10.4 48 302-349 39-86 (89)
173 3n22_A Protein S100-A2; EF-han 64.5 20 0.00067 28.3 7.0 69 338-415 6-86 (98)
174 3euh_A Protein KICB, chromosom 63.7 78 0.0027 31.7 12.3 83 315-403 206-292 (440)
175 2akf_A Coronin-1A; coiled coil 63.7 19 0.00064 22.4 5.0 25 324-348 4-28 (32)
176 4adz_A CSOR; transcription, co 63.5 64 0.0022 27.5 10.2 15 382-396 121-135 (136)
177 1kd8_A GABH AIV, GCN4 acid bas 63.2 22 0.00077 23.1 5.5 28 317-344 6-33 (36)
178 3tnu_B Keratin, type II cytosk 63.2 65 0.0022 26.8 10.4 17 294-310 46-62 (129)
179 3onj_A T-snare VTI1; helix, HA 62.9 51 0.0018 26.1 9.2 52 302-353 35-93 (97)
180 2w6b_A RHO guanine nucleotide 62.9 25 0.00086 25.1 6.2 9 328-336 40-48 (56)
181 4eto_A Protein S100-A4; calciu 62.8 25 0.00087 27.2 7.3 70 338-416 5-86 (93)
182 2fcw_A Alpha-2-macroglobulin r 62.7 63 0.0021 26.5 11.1 61 290-350 30-98 (109)
183 1xk4_C Calgranulin B; S100 fam 62.6 21 0.00073 28.6 7.0 18 397-414 70-87 (113)
184 2j69_A Bacterial dynamin-like 62.5 25 0.00084 37.9 9.4 13 274-286 590-602 (695)
185 1hm6_A Annexin 1; phospholipid 62.1 1.3 4.5E-05 43.9 -0.7 90 279-368 135-256 (346)
186 1go4_E MAD1 (mitotic arrest de 61.9 62 0.0021 26.1 11.0 47 317-370 17-66 (100)
187 1hjb_A Ccaat/enhancer binding 61.8 41 0.0014 26.4 8.1 38 315-352 39-76 (87)
188 2zqm_A Prefoldin beta subunit 61.5 37 0.0013 27.3 8.4 36 317-352 68-103 (117)
189 1fxk_A Prefoldin; archaeal pro 61.4 46 0.0016 26.3 8.8 36 317-352 63-98 (107)
190 2oqq_A Transcription factor HY 61.0 32 0.0011 23.2 6.2 33 317-349 8-40 (42)
191 3nxa_A Protein S100-A16; S100 60.9 24 0.00082 27.9 6.9 71 337-415 5-87 (100)
192 2fxo_A Myosin heavy chain, car 60.9 72 0.0025 26.6 13.5 36 317-352 67-102 (129)
193 2ba2_A D12_ORF131, hypothetica 60.5 58 0.002 25.3 9.5 50 282-331 31-80 (85)
194 2wt7_A Proto-oncogene protein 60.4 32 0.0011 25.1 6.9 34 317-350 28-61 (63)
195 2w6a_A ARF GTPase-activating p 60.4 46 0.0016 24.2 7.6 35 297-331 26-60 (63)
196 1nkp_B MAX protein, MYC proto- 60.3 19 0.00065 27.7 6.0 34 320-353 48-81 (83)
197 1m1j_A Fibrinogen alpha subuni 60.2 53 0.0018 33.5 10.5 44 306-349 112-155 (491)
198 3rm1_A Protein S100-B; alpha-h 60.1 23 0.00079 27.1 6.5 20 396-415 65-84 (92)
199 3he5_B Synzip2; heterodimeric 59.7 38 0.0013 23.0 6.7 27 323-349 21-47 (52)
200 1t2k_D Cyclic-AMP-dependent tr 59.6 30 0.001 25.0 6.6 33 317-349 27-59 (61)
201 3oa7_A Head morphogenesis prot 59.3 35 0.0012 30.9 8.1 44 302-345 31-77 (206)
202 3l4q_C Phosphatidylinositol 3- 59.3 45 0.0015 29.5 8.9 36 317-352 122-157 (170)
203 2h2k_A Protein S100-A13; calci 59.1 15 0.00051 29.6 5.4 29 397-427 76-104 (106)
204 3frt_A Charged multivesicular 59.0 57 0.002 30.0 9.9 20 399-419 113-132 (218)
205 1dm5_A Annexin XII E105K mutan 59.0 12 0.00043 36.2 5.8 68 322-396 243-310 (315)
206 1qsd_A Protein (beta-tubulin b 58.9 71 0.0024 25.9 11.4 51 301-352 32-83 (106)
207 3ra3_A P1C; coiled coil domain 58.8 6.9 0.00024 23.4 2.3 25 322-346 3-27 (28)
208 3a7p_A Autophagy protein 16; c 58.4 83 0.0028 27.3 10.1 7 306-312 73-79 (152)
209 2zhj_A Annexin A4; zynogen gra 57.7 6.2 0.00021 38.5 3.3 24 279-302 110-133 (322)
210 2v4h_A NF-kappa-B essential mo 57.2 62 0.0021 26.5 8.6 9 327-335 91-99 (110)
211 3ci9_A Heat shock factor-bindi 57.1 19 0.00065 25.2 4.8 31 319-349 17-47 (48)
212 2q07_A Uncharacterized protein 57.1 13 0.00044 36.1 5.4 46 371-417 124-181 (306)
213 3opc_A Uncharacterized protein 57.0 89 0.003 26.4 10.9 30 323-352 42-71 (154)
214 3gn4_A Myosin-VI; unconvention 56.7 47 0.0016 28.7 8.3 36 314-349 81-116 (148)
215 2ic6_A Nucleocapsid protein; h 56.3 62 0.0021 24.9 8.0 19 334-352 53-71 (78)
216 1cxz_B Protein (PKN); protein- 56.1 57 0.002 25.6 8.0 13 333-345 70-82 (86)
217 3dyt_A Sorting nexin-9; 3-heli 56.1 1E+02 0.0035 30.1 12.1 25 328-352 228-252 (366)
218 2ke4_A CDC42-interacting prote 55.9 77 0.0026 25.4 9.6 76 268-348 11-91 (98)
219 1nkp_A C-MYC, MYC proto-oncoge 55.7 62 0.0021 25.2 8.3 35 319-353 52-86 (88)
220 1j55_A S-100P protein; metal b 54.5 34 0.0012 26.4 6.7 18 397-414 66-83 (95)
221 2lnk_A Protein S100-A4; EF-han 54.4 24 0.00081 28.8 5.9 18 397-414 79-96 (113)
222 3ohw_B Phycobilisome LCM core- 54.3 22 0.00076 30.8 5.9 57 359-418 24-82 (148)
223 1qjt_A EH1, epidermal growth f 54.2 7.2 0.00025 30.8 2.6 20 396-415 58-77 (99)
224 3gpv_A Transcriptional regulat 54.1 33 0.0011 29.2 7.1 36 318-353 94-129 (148)
225 3lay_A Zinc resistance-associa 54.0 1.1E+02 0.0037 27.1 10.6 24 315-338 113-136 (175)
226 3lss_A Seryl-tRNA synthetase; 53.9 60 0.0021 33.4 10.1 25 328-352 113-137 (484)
227 2v66_B Nuclear distribution pr 53.5 93 0.0032 25.5 12.0 31 296-326 40-70 (111)
228 1l8d_A DNA double-strand break 53.1 85 0.0029 25.0 10.1 30 325-354 16-45 (112)
229 2b5u_A Colicin E3; high resolu 53.0 15 0.00052 37.8 5.3 11 303-313 323-333 (551)
230 3qne_A Seryl-tRNA synthetase, 52.5 42 0.0014 34.7 8.6 68 287-354 43-110 (485)
231 3rf1_A Glycyl-tRNA synthetase 52.4 53 0.0018 31.3 8.5 28 389-416 269-299 (311)
232 3d5k_A OPRM, outer membrane pr 52.2 1.8E+02 0.0062 28.6 14.0 45 354-398 197-241 (474)
233 3exa_A TRNA delta(2)-isopenten 52.2 47 0.0016 32.4 8.6 39 365-417 237-275 (322)
234 1bb1_A Designed, thermostable 52.1 42 0.0014 21.1 5.4 32 320-351 3-34 (36)
235 3zx6_A HAMP, methyl-accepting 52.0 1.7E+02 0.0058 28.2 14.6 15 401-415 182-196 (341)
236 2no2_A HIP-I, huntingtin-inter 52.0 94 0.0032 25.2 12.1 10 303-312 56-65 (107)
237 3l4f_A RHO guanine nucleotide 51.9 27 0.00093 25.6 5.1 22 317-338 26-47 (61)
238 3osj_A Phycobilisome LCM core- 51.9 14 0.00046 32.1 4.1 50 368-418 30-81 (147)
239 3gp4_A Transcriptional regulat 51.8 47 0.0016 28.1 7.6 40 308-347 84-123 (142)
240 2ve7_C Kinetochore protein NUF 51.8 11 0.00037 35.6 3.8 21 359-379 227-247 (250)
241 3c98_B Syntaxin-1A; protein co 51.6 75 0.0026 28.9 9.7 31 322-352 85-115 (279)
242 1xk4_A Calgranulin A; S100 fam 51.4 60 0.0021 24.4 7.7 18 397-414 63-80 (93)
243 1qls_A S100C protein, calgizza 51.3 18 0.00061 27.6 4.5 18 397-414 70-87 (99)
244 3t97_C Nuclear pore glycoprote 50.8 20 0.00067 26.7 4.3 39 307-345 21-59 (64)
245 3gp4_A Transcriptional regulat 50.5 47 0.0016 28.1 7.4 33 317-349 86-118 (142)
246 2aze_B Transcription factor E2 50.2 30 0.001 28.2 5.8 29 317-345 11-39 (106)
247 2nrj_A HBL B protein; enteroto 49.8 45 0.0015 32.7 8.1 43 303-345 125-167 (346)
248 1avo_B 11S regulator; proteaso 49.8 1.2E+02 0.0041 25.8 9.9 98 326-429 10-120 (140)
249 2pmy_A RAS and EF-hand domain- 49.8 12 0.00041 28.4 3.2 15 397-411 75-89 (91)
250 2dq0_A Seryl-tRNA synthetase; 49.7 44 0.0015 34.1 8.3 60 295-354 42-108 (455)
251 2j69_A Bacterial dynamin-like 49.4 76 0.0026 34.0 10.5 35 306-340 635-669 (695)
252 2gd5_A Charged multivesicular 49.4 42 0.0014 29.6 7.2 18 397-414 111-128 (179)
253 1kd8_B GABH BLL, GCN4 acid bas 49.3 51 0.0017 21.5 5.4 26 317-342 6-31 (36)
254 4akk_A Nitrate regulatory prot 49.1 2.1E+02 0.0073 28.5 16.2 40 378-419 195-234 (423)
255 2akf_A Coronin-1A; coiled coil 49.1 45 0.0016 20.7 5.0 23 318-340 5-27 (32)
256 1wle_A Seryl-tRNA synthetase; 48.7 1.3E+02 0.0044 31.1 11.7 26 329-354 130-155 (501)
257 2qyw_A Vesicle transport throu 48.7 1E+02 0.0035 24.6 9.6 46 302-347 50-99 (102)
258 3i9y_A Sensor protein; stacked 48.6 1.8E+02 0.0063 27.5 13.2 90 331-428 93-182 (276)
259 2y5i_A S100Z, S100 calcium bin 48.6 40 0.0014 26.3 6.3 18 397-414 67-84 (99)
260 2xzr_A Immunoglobulin-binding 48.3 1E+02 0.0035 24.6 12.0 71 282-352 22-92 (114)
261 3p8c_E Probable protein brick1 48.3 82 0.0028 24.0 7.5 37 317-353 29-65 (75)
262 3axj_A GM27569P, translin; tra 48.3 82 0.0028 29.4 9.3 20 410-429 204-223 (249)
263 1ses_A Seryl-tRNA synthetase; 48.2 85 0.0029 31.6 10.1 60 292-351 36-96 (421)
264 1fxk_C Protein (prefoldin); ar 47.9 22 0.00075 29.6 4.8 17 381-397 83-99 (133)
265 3s4r_A Vimentin; alpha-helix, 47.7 1E+02 0.0035 24.3 9.3 29 317-345 61-89 (93)
266 3u06_A Protein claret segregat 47.4 59 0.002 32.7 8.7 12 301-312 24-35 (412)
267 2l81_A Enhancer of filamentati 47.4 1.2E+02 0.0041 26.9 9.6 46 370-415 98-154 (176)
268 1m1j_C Fibrinogen gamma chain; 46.7 1.8E+02 0.006 29.3 12.0 22 331-352 110-131 (409)
269 4h22_A Leucine-rich repeat fli 46.5 67 0.0023 26.0 7.1 31 317-347 56-86 (103)
270 2xdj_A Uncharacterized protein 46.4 1E+02 0.0034 23.9 10.3 28 317-344 32-59 (83)
271 3iyk_A VP5; icosahedral virus; 46.3 1.1E+02 0.0037 31.5 10.3 11 279-289 117-127 (526)
272 1m1j_C Fibrinogen gamma chain; 46.3 72 0.0025 32.2 9.1 24 373-396 92-115 (409)
273 3foz_A TRNA delta(2)-isopenten 45.8 66 0.0023 31.3 8.5 39 365-417 245-283 (316)
274 3nmd_A CGMP dependent protein 45.8 43 0.0015 25.4 5.5 12 332-343 53-64 (72)
275 1jnm_A Proto-oncogene C-JUN; B 45.6 79 0.0027 22.8 7.0 32 317-348 27-58 (62)
276 1lwu_C Fibrinogen gamma chain; 45.6 61 0.0021 31.6 8.2 25 324-348 31-55 (323)
277 3hhm_B NISH2 P85alpha; PI3KCA, 45.5 38 0.0013 33.7 6.9 10 134-143 78-87 (373)
278 1gs9_A Apolipoprotein E, APOE4 45.5 1.5E+02 0.0052 25.7 10.3 53 319-382 92-144 (165)
279 1ses_A Seryl-tRNA synthetase; 45.3 66 0.0023 32.4 8.8 36 319-354 68-103 (421)
280 2zqm_A Prefoldin beta subunit 45.1 67 0.0023 25.7 7.3 37 315-351 73-109 (117)
281 1z23_A CRK-associated substrat 45.1 1.2E+02 0.0041 26.6 9.1 115 297-415 10-142 (163)
282 3a7o_A Autophagy protein 16; c 45.1 97 0.0033 23.3 7.7 19 331-349 51-69 (75)
283 3ghg_C Fibrinogen gamma chain; 45.0 1.7E+02 0.0059 29.4 11.5 20 334-353 113-132 (411)
284 1j1d_C Troponin I, TNI; THIN f 45.0 1.4E+02 0.0048 25.2 12.6 48 307-354 60-107 (133)
285 2wcb_A Protein S100-A12; calci 45.0 7.3 0.00025 30.4 1.2 19 397-415 69-87 (95)
286 1gu4_A CAAT/enhancer binding p 44.9 70 0.0024 24.6 6.8 33 317-349 41-73 (78)
287 3pik_A Cation efflux system pr 44.4 2.3E+02 0.0077 27.4 13.8 44 354-397 188-231 (446)
288 1h7c_A Tubulin-specific chaper 43.8 1.2E+02 0.0041 24.6 8.5 35 316-350 49-83 (108)
289 2q12_A DIP13 alpha, DCC-intera 43.8 1.6E+02 0.0054 27.1 10.6 10 401-410 221-230 (265)
290 3a8t_A Adenylate isopentenyltr 43.6 1.2E+02 0.0042 29.6 10.1 47 364-417 227-283 (339)
291 3gpv_A Transcriptional regulat 43.5 45 0.0015 28.4 6.2 37 315-351 98-134 (148)
292 4e81_A Chaperone protein DNAK; 43.4 1.7E+02 0.0059 26.4 10.6 18 333-350 172-189 (219)
293 2ky4_A Phycobilisome linker po 43.3 13 0.00044 32.4 2.6 51 368-418 21-73 (149)
294 1no4_A Late, head morphogenesi 43.3 1.1E+02 0.0038 23.5 9.6 55 291-345 26-80 (97)
295 3ni0_A Bone marrow stromal ant 43.3 1.2E+02 0.0042 24.1 12.0 52 301-352 32-86 (99)
296 1w3w_A Annexin A8; coagulation 43.2 23 0.00078 34.5 4.8 68 322-396 253-320 (327)
297 4etp_A Kinesin-like protein KA 43.2 38 0.0013 34.0 6.6 7 372-378 123-129 (403)
298 3zx6_A HAMP, methyl-accepting 42.8 2.3E+02 0.008 27.1 13.8 13 402-414 148-160 (341)
299 1vcs_A Vesicle transport throu 42.7 55 0.0019 26.2 6.2 53 301-353 38-94 (102)
300 3m48_A General control protein 42.7 44 0.0015 21.4 4.3 23 317-339 5-27 (33)
301 3ljm_A Coil Ser L9C; de novo d 42.7 49 0.0017 20.2 4.3 23 323-345 5-27 (31)
302 4dnd_A Syntaxin-10, SYN10; str 42.7 1.1E+02 0.0037 25.7 8.3 31 322-352 63-93 (130)
303 2ocy_A RAB guanine nucleotide 42.5 1.7E+02 0.0058 25.4 10.5 74 279-352 16-95 (154)
304 2k48_A Nucleoprotein; viral pr 42.4 1.4E+02 0.0046 24.3 8.9 17 306-322 47-63 (107)
305 1k8u_A S100A6, calcyclin, CACY 42.2 47 0.0016 24.3 5.6 18 396-413 64-81 (90)
306 2day_A Ring finger protein 25; 42.2 17 0.00057 30.0 3.1 21 12-32 62-82 (128)
307 3c3g_A Alpha/beta peptide with 42.0 48 0.0016 21.2 4.4 23 317-339 5-27 (33)
308 3ol1_A Vimentin; structural ge 41.7 1.4E+02 0.005 24.4 12.0 15 379-393 90-104 (119)
309 2wq1_A General control protein 41.6 49 0.0017 21.1 4.4 23 317-339 5-27 (33)
310 2wvr_A Geminin; DNA replicatio 41.5 1.5E+02 0.0051 26.9 9.3 8 317-324 134-141 (209)
311 1q08_A Zn(II)-responsive regul 41.5 75 0.0026 24.5 6.9 38 317-354 37-74 (99)
312 2xdj_A Uncharacterized protein 41.4 1.2E+02 0.0042 23.4 9.6 13 334-346 53-65 (83)
313 1ykh_B RNA polymerase II holoe 41.3 1E+02 0.0034 25.9 7.9 24 327-350 104-127 (132)
314 3f6n_A Virion-associated prote 41.2 1.2E+02 0.0041 25.2 8.0 33 322-354 40-72 (129)
315 1l8d_A DNA double-strand break 41.2 1.3E+02 0.0045 23.8 11.5 31 321-351 66-96 (112)
316 4etp_A Kinesin-like protein KA 40.9 74 0.0025 31.9 8.2 14 336-349 48-61 (403)
317 2oxj_A Hybrid alpha/beta pepti 40.8 51 0.0017 21.2 4.4 23 317-339 6-28 (34)
318 3vmx_A Voltage-gated hydrogen 40.7 90 0.0031 21.7 6.8 23 317-339 16-38 (48)
319 2zdi_C Prefoldin subunit alpha 40.4 25 0.00086 30.1 4.1 119 309-430 6-142 (151)
320 3c3f_A Alpha/beta peptide with 40.4 52 0.0018 21.1 4.4 23 317-339 6-28 (34)
321 2gyq_A YCFI, putative structur 40.2 1.8E+02 0.0063 25.4 9.8 17 380-396 131-147 (173)
322 3d3q_A TRNA delta(2)-isopenten 40.2 64 0.0022 31.6 7.5 42 362-417 240-281 (340)
323 3thf_A Protein shroom; coiled- 40.0 2.1E+02 0.007 25.7 13.1 79 317-396 92-179 (190)
324 2q6q_A Spindle POLE BODY compo 39.9 1.2E+02 0.0039 22.7 9.5 37 297-333 16-52 (74)
325 1j5w_A Glycyl-tRNA synthetase 39.7 1E+02 0.0035 29.2 8.3 21 396-416 260-283 (298)
326 1ykh_B RNA polymerase II holoe 39.7 53 0.0018 27.7 5.9 23 301-323 92-114 (132)
327 3ogh_B Protein YCIE; iron-bind 39.6 1.1E+02 0.0037 27.0 8.2 43 378-421 120-162 (171)
328 1fi6_A EH domain protein REPS1 39.5 22 0.00077 27.1 3.3 17 397-413 57-73 (92)
329 2ykt_A Brain-specific angiogen 39.5 2.1E+02 0.0072 26.6 10.7 7 390-396 185-191 (253)
330 3hiu_A Uncharacterized protein 39.5 1.6E+02 0.0053 25.8 9.2 43 378-421 117-159 (166)
331 3d2f_A Heat shock protein homo 39.5 75 0.0026 34.0 8.5 18 333-350 578-595 (675)
332 2yz0_A Serine/threonine-protei 39.2 22 0.00076 29.7 3.5 23 11-33 64-86 (138)
333 2daw_A RWD domain containing p 39.2 25 0.00084 30.3 3.8 23 10-32 76-98 (154)
334 2hy6_A General control protein 39.0 59 0.002 20.9 4.5 23 317-339 6-28 (34)
335 3caz_A BAR protein; thermo-aci 39.0 2.2E+02 0.0074 25.6 12.8 34 317-350 134-170 (294)
336 2jjz_A Ionized calcium-binding 38.9 98 0.0033 25.5 7.7 65 339-412 46-115 (150)
337 1fxk_A Prefoldin; archaeal pro 38.8 68 0.0023 25.3 6.3 34 316-349 69-102 (107)
338 1kd8_A GABH AIV, GCN4 acid bas 38.6 69 0.0024 20.8 4.8 21 309-329 12-32 (36)
339 3mn2_A Probable ARAC family tr 38.5 69 0.0023 25.0 6.2 54 378-433 24-82 (108)
340 3swk_A Vimentin; cytoskeleton, 38.3 1.4E+02 0.0047 23.1 10.9 29 317-345 54-82 (86)
341 3b5n_A Synaptobrevin homolog 1 38.1 95 0.0032 22.3 6.4 27 320-346 7-33 (61)
342 2kgr_A Intersectin-1; structur 37.9 21 0.0007 28.7 3.0 16 397-412 62-77 (111)
343 3crm_A TRNA delta(2)-isopenten 37.9 73 0.0025 30.9 7.4 40 364-417 250-289 (323)
344 1dkg_A Nucleotide exchange fac 37.8 1.5E+02 0.0052 26.5 9.1 47 302-350 61-107 (197)
345 2gjd_A Ubiquitin-conjugating e 37.5 27 0.00093 30.1 3.9 37 112-149 83-122 (157)
346 3l4q_C Phosphatidylinositol 3- 37.2 1.8E+02 0.0063 25.5 9.2 54 296-349 115-168 (170)
347 3hd7_A Vesicle-associated memb 37.2 65 0.0022 25.3 5.7 40 312-351 2-41 (91)
348 1yke_B RNA polymerase II holoe 37.1 52 0.0018 28.5 5.6 36 317-352 94-129 (151)
349 1yke_B RNA polymerase II holoe 37.1 1.2E+02 0.0039 26.2 7.8 19 302-320 93-111 (151)
350 3frt_A Charged multivesicular 37.1 63 0.0022 29.7 6.4 18 322-339 71-88 (218)
351 2ebm_A RWD domain-containing p 37.0 21 0.00073 29.3 3.0 21 11-31 57-77 (128)
352 3uux_B Mitochondrial division 36.8 2.6E+02 0.009 25.9 11.2 51 297-347 176-226 (242)
353 3ol1_A Vimentin; structural ge 36.7 1.7E+02 0.006 23.9 13.6 31 317-347 74-104 (119)
354 1lwu_C Fibrinogen gamma chain; 36.6 73 0.0025 31.1 7.1 25 328-352 28-52 (323)
355 2xnx_M M protein, M1-BC1; cell 36.6 2E+02 0.0069 24.6 11.2 36 317-352 71-106 (146)
356 4fi5_A Nucleoprotein; structur 36.5 1.2E+02 0.0043 24.8 7.3 19 334-352 70-88 (113)
357 1n7s_A Vesicle-associated memb 36.5 98 0.0034 22.3 6.3 27 320-346 9-35 (63)
358 3i00_A HIP-I, huntingtin-inter 36.4 1.8E+02 0.0062 24.0 9.5 27 276-303 19-45 (120)
359 3lsg_A Two-component response 36.3 1.2E+02 0.0042 23.2 7.4 75 342-433 4-81 (103)
360 3q0x_A Centriole protein; cent 36.3 1.1E+02 0.0037 28.3 7.9 21 331-351 197-217 (228)
361 1ik9_A DNA repair protein XRCC 36.1 2.5E+02 0.0085 25.5 10.8 63 286-350 148-210 (213)
362 2ou3_A Tellurite resistance pr 36.0 86 0.0029 26.8 6.9 38 396-433 74-129 (161)
363 3r6n_A Desmoplakin; spectrin r 35.9 3.4E+02 0.012 27.4 12.4 58 335-394 201-264 (450)
364 2l5g_B Putative uncharacterize 35.4 69 0.0024 21.7 4.6 21 327-347 17-37 (42)
365 3he5_A Synzip1; heterodimeric 35.4 99 0.0034 20.7 7.0 9 318-326 30-38 (49)
366 1uo4_A General control protein 35.3 73 0.0025 20.5 4.5 23 317-339 6-28 (34)
367 2hyv_A Annexin A2; calcium-bin 35.2 26 0.0009 33.7 3.7 64 326-396 238-301 (308)
368 1cxz_B Protein (PKN); protein- 35.1 1.6E+02 0.0055 23.0 8.6 42 311-352 41-82 (86)
369 3efg_A Protein SLYX homolog; x 35.0 1.3E+02 0.0045 22.9 7.0 29 319-347 28-56 (78)
370 3ogh_B Protein YCIE; iron-bind 34.9 2.3E+02 0.0079 24.8 10.4 25 328-352 42-66 (171)
371 3fvb_A Bacterioferritin; niaid 34.9 2.2E+02 0.0075 24.5 14.0 26 328-353 62-87 (182)
372 1c94_A Retro-GCN4 leucine zipp 34.8 28 0.00095 22.2 2.4 24 301-324 9-32 (38)
373 3u06_A Protein claret segregat 34.8 1.2E+02 0.0041 30.5 8.6 11 342-352 47-57 (412)
374 1j1e_C Troponin I, TNI; THIN f 34.5 2.5E+02 0.0084 25.0 12.6 48 307-354 60-107 (180)
375 3viq_A SWI5-dependent recombin 34.5 25 0.00087 29.4 3.0 29 324-352 5-33 (122)
376 2cly_A ATP synthase B chain, m 34.4 2.7E+02 0.0092 25.4 12.2 33 318-350 128-160 (214)
377 3nyv_A Calmodulin-domain prote 34.3 2.4E+02 0.0081 27.9 11.0 16 397-412 396-411 (484)
378 3edu_A Beta-I spectrin, spectr 34.2 2.4E+02 0.0081 24.7 12.7 87 302-393 78-168 (218)
379 2jmh_A BLO T 5, mite allergen 34.1 73 0.0025 26.3 5.6 26 359-384 91-116 (119)
380 4drw_A Protein S100-A10/annexi 34.0 19 0.00065 29.8 2.2 30 385-414 54-86 (121)
381 2lhi_A Calmodulin, serine/thre 34.0 1.5E+02 0.0051 25.1 8.2 74 344-427 85-172 (176)
382 3efg_A Protein SLYX homolog; x 33.9 1.2E+02 0.004 23.2 6.5 30 317-346 33-62 (78)
383 4dci_A Uncharacterized protein 33.9 2.3E+02 0.0078 24.4 9.4 70 284-353 29-104 (150)
384 1ytz_I Troponin I; muscle, THI 33.9 2.5E+02 0.0087 24.9 10.4 46 308-353 58-103 (182)
385 3mwu_A Calmodulin-domain prote 33.8 3.6E+02 0.012 26.6 12.3 66 340-409 328-407 (486)
386 3cve_A Homer protein homolog 1 33.6 1.5E+02 0.0053 22.3 10.5 34 315-348 28-61 (72)
387 3pwx_A Putative flagellar HOOK 33.5 1.8E+02 0.0063 26.6 9.2 36 317-352 190-225 (239)
388 3m9b_A Proteasome-associated A 33.5 58 0.002 30.6 5.6 24 329-352 71-94 (251)
389 4ani_A Protein GRPE; chaperone 33.4 2.8E+02 0.0095 25.2 13.4 26 387-412 118-145 (213)
390 1wlz_A DJBP, CAP-binding prote 33.4 56 0.0019 24.9 4.9 15 397-411 74-88 (105)
391 3s84_A Apolipoprotein A-IV; fo 33.3 3.1E+02 0.011 25.7 11.8 17 325-341 102-118 (273)
392 2aze_B Transcription factor E2 33.2 95 0.0032 25.1 6.2 35 303-341 8-42 (106)
393 1bf5_A Signal transducer and a 33.1 4.5E+02 0.015 27.6 13.4 15 296-310 21-35 (575)
394 4b4t_K 26S protease regulatory 33.0 68 0.0023 32.4 6.5 36 317-352 54-89 (428)
395 1c07_A Protein (epidermal grow 32.9 28 0.00097 26.7 3.0 17 396-412 57-73 (95)
396 1q06_A Transcriptional regulat 32.8 96 0.0033 25.8 6.5 36 318-353 78-113 (135)
397 3vu7_H DNA repair protein REV1 32.7 65 0.0022 26.9 5.3 47 343-397 43-92 (124)
398 4dvy_P Cytotoxicity-associated 32.7 1.7E+02 0.0057 30.7 9.1 79 337-416 739-822 (876)
399 2xu6_A MDV1 coiled coil; prote 32.3 1.6E+02 0.0055 22.2 7.0 57 292-348 15-71 (72)
400 3v86_A De novo design helix; c 32.3 57 0.002 19.3 3.4 10 318-327 6-15 (27)
401 3jsv_C NF-kappa-B essential mo 32.2 1.9E+02 0.0065 23.0 7.9 16 324-339 66-81 (94)
402 3tul_A Cell invasion protein S 32.2 2.4E+02 0.0083 24.2 10.8 8 368-375 99-106 (158)
403 3t98_B Nucleoporin NUP58/NUP45 32.2 1E+02 0.0035 24.4 6.1 65 327-391 13-77 (93)
404 3lss_A Seryl-tRNA synthetase; 32.2 2.3E+02 0.0077 29.1 10.3 29 325-353 114-142 (484)
405 1l4a_A Synaptobrevin; snare, s 32.1 1.1E+02 0.0038 23.2 6.2 24 327-350 27-50 (80)
406 2ic9_A Nucleocapsid protein; h 31.9 1.7E+02 0.006 23.2 7.3 17 335-351 54-70 (96)
407 1bb1_B Designed, thermostable 31.9 97 0.0033 19.5 5.2 27 323-349 6-32 (36)
408 3uoi_A Bacterioferritin, BFR; 31.9 2.2E+02 0.0075 23.6 13.2 26 328-353 43-68 (161)
409 3swy_A Cyclic nucleotide-gated 31.8 1.3E+02 0.0043 20.8 6.4 23 303-325 21-43 (46)
410 2efk_A CDC42-interacting prote 31.8 3.1E+02 0.01 25.2 12.8 127 271-397 86-231 (301)
411 2bni_A General control protein 31.6 91 0.0031 20.1 4.5 22 317-338 6-27 (34)
412 2wb7_A PT26-6P; extra chromoso 31.4 1.3E+02 0.0045 31.1 8.2 15 43-59 94-108 (526)
413 2ch7_A Methyl-accepting chemot 31.4 3.1E+02 0.011 25.2 13.7 132 283-415 36-174 (309)
414 1vp7_A Exodeoxyribonuclease VI 31.1 1.2E+02 0.0042 24.3 6.4 25 305-329 41-65 (100)
415 3hh0_A Transcriptional regulat 31.1 76 0.0026 26.9 5.6 45 371-415 86-134 (146)
416 2lvv_A Flagellar calcium-bindi 31.1 1.3E+02 0.0043 26.6 7.5 11 397-407 111-121 (226)
417 3vp9_A General transcriptional 30.6 53 0.0018 26.1 4.1 67 287-353 10-81 (92)
418 1gl2_A Endobrevin; membrane pr 30.5 98 0.0034 22.5 5.4 24 323-346 17-40 (65)
419 2gd5_A Charged multivesicular 30.4 75 0.0026 27.9 5.7 35 356-390 112-146 (179)
420 1ci6_A Transcription factor AT 30.4 1.6E+02 0.0053 21.4 8.3 17 315-331 40-56 (63)
421 2zvf_A Alanyl-tRNA synthetase; 30.1 59 0.002 28.0 4.9 41 304-344 17-57 (171)
422 3dd4_A KV channel-interacting 30.0 1.8E+02 0.0063 25.5 8.5 15 398-412 117-131 (229)
423 1u00_A HSC66, chaperone protei 29.9 2.7E+02 0.0091 25.2 9.6 18 333-350 169-186 (227)
424 2pnv_A Small conductance calci 29.8 1E+02 0.0034 21.0 4.8 30 304-333 8-37 (43)
425 1dn1_B Syntaxin 1A, syntaxin b 29.7 3.3E+02 0.011 25.2 10.4 17 402-418 138-154 (267)
426 2wt7_A Proto-oncogene protein 29.7 1.6E+02 0.0054 21.3 7.6 28 306-333 31-58 (63)
427 2odv_A Plectin 1, HD1; plakin 29.5 3.3E+02 0.011 24.9 12.3 35 328-362 167-201 (235)
428 3ghg_B Fibrinogen beta chain; 29.5 4.7E+02 0.016 26.6 12.8 16 381-396 158-173 (461)
429 3gvy_A Bacterioferritin; iron 29.4 2.4E+02 0.0083 23.3 11.5 27 328-354 41-67 (161)
430 2grr_A Ubiquitin-conjugating e 29.3 41 0.0014 29.1 3.6 37 112-149 86-125 (161)
431 2vkl_A RV0948C/MT0975; helical 29.3 90 0.0031 24.3 5.3 23 373-395 27-49 (90)
432 2ebk_A RWD domain-containing p 29.2 23 0.0008 29.1 2.0 22 10-31 57-78 (128)
433 4g1a_A AQ-C16C19 peptide; heli 29.2 26 0.0009 21.5 1.6 24 317-340 5-28 (32)
434 1gd2_E Transcription factor PA 29.2 1.8E+02 0.0061 21.7 8.9 26 317-342 41-66 (70)
435 2aak_A UBC1, ubiquitin conjuga 29.1 47 0.0016 28.3 4.0 37 112-149 78-115 (152)
436 1yc9_A VCEC, multidrug resista 29.0 3.9E+02 0.013 25.6 14.7 43 355-397 184-226 (442)
437 1gkz_A [3-methyl-2-oxobutanoat 29.0 3.8E+02 0.013 25.6 11.2 23 398-420 193-215 (388)
438 3mq1_A Mite allergen DER P 5; 28.9 60 0.0021 26.2 4.1 27 359-385 76-102 (103)
439 2bvl_A Toxin B; glycosyltransf 28.8 98 0.0034 32.2 6.8 77 340-420 110-189 (543)
440 4h8s_A DCC-interacting protein 28.7 4.2E+02 0.014 25.8 13.4 6 414-419 153-158 (407)
441 3t98_A Nuclear pore complex pr 28.6 1.5E+02 0.005 20.9 5.7 29 317-345 20-48 (51)
442 1ez3_A Syntaxin-1A; three heli 28.5 1.5E+02 0.005 24.0 6.8 29 316-344 51-79 (127)
443 4b9q_A Chaperone protein DNAK; 28.4 3.2E+02 0.011 28.4 11.1 18 333-350 560-577 (605)
444 1kd8_B GABH BLL, GCN4 acid bas 28.4 1.2E+02 0.0043 19.6 5.6 15 312-326 15-29 (36)
445 4ad8_A DNA repair protein RECN 28.3 4.7E+02 0.016 26.3 13.2 146 286-431 181-340 (517)
446 3qfl_A MLA10; coiled-coil, (CC 28.2 2.3E+02 0.0079 22.7 11.0 21 334-354 27-47 (115)
447 4fi5_A Nucleoprotein; structur 28.1 2.5E+02 0.0084 23.0 8.9 16 380-395 70-85 (113)
448 3e98_A GAF domain of unknown f 27.9 2.1E+02 0.0072 26.5 8.6 14 383-396 117-130 (252)
449 1ggw_A Protein (CDC4P); light 27.8 59 0.002 25.7 4.2 60 342-410 75-138 (140)
450 4h8s_A DCC-interacting protein 27.8 4E+02 0.014 26.0 11.2 143 271-415 124-276 (407)
451 1rh1_A Colicin B; FEPA, cytoto 27.7 3.1E+02 0.011 27.9 10.0 96 294-393 292-401 (511)
452 3axj_B TRAX, translin associat 27.7 2.5E+02 0.0087 26.7 9.3 151 278-430 44-268 (298)
453 3trt_A Vimentin; cytoskeleton, 27.7 1.9E+02 0.0064 21.4 9.7 58 271-332 19-76 (77)
454 1gs9_A Apolipoprotein E, APOE4 27.6 2.3E+02 0.0079 24.5 8.3 70 273-343 89-160 (165)
455 2kax_A Protein S100-A5; EF-han 27.5 1.2E+02 0.0042 22.7 5.8 68 337-414 4-81 (92)
456 3cvf_A Homer-3, homer protein 27.5 2.1E+02 0.0072 22.0 9.9 59 294-352 13-71 (79)
457 1q90_R Cytochrome B6-F complex 27.5 32 0.0011 24.1 2.1 12 412-423 9-20 (49)
458 2xu6_A MDV1 coiled coil; prote 27.5 2E+02 0.0068 21.7 10.1 62 294-355 3-64 (72)
459 2q6q_A Spindle POLE BODY compo 27.3 1.9E+02 0.0067 21.5 8.3 58 292-353 1-58 (74)
460 2ch7_A Methyl-accepting chemot 27.3 3.7E+02 0.013 24.7 13.7 133 282-415 7-139 (309)
461 2lv7_A Calcium-binding protein 27.3 25 0.00084 27.7 1.7 63 339-407 32-96 (100)
462 2c5k_T Syntaxin TLG1, T-snare 27.2 1.6E+02 0.0055 23.2 6.5 60 303-362 8-72 (95)
463 2dq3_A Seryl-tRNA synthetase; 27.1 45 0.0015 33.7 4.0 78 283-360 36-113 (425)
464 2kho_A Heat shock protein 70; 27.0 2.3E+02 0.0078 29.6 9.6 83 297-412 509-591 (605)
465 2fb5_A Hypothetical membrane s 27.0 3.6E+02 0.012 24.4 12.8 87 320-415 4-90 (205)
466 4dzn_A Coiled-coil peptide CC- 26.9 1.2E+02 0.004 18.8 4.8 28 320-347 3-30 (33)
467 1qv0_A Obelin, OBL; photoprote 26.8 1.2E+02 0.0041 25.4 6.3 77 339-415 16-98 (195)
468 2bez_C E2 glycoprotein; coiled 26.8 2.1E+02 0.0073 21.8 11.1 65 283-347 8-76 (77)
469 3swk_A Vimentin; cytoskeleton, 26.8 2.2E+02 0.0075 21.9 9.8 84 299-393 1-84 (86)
470 3pp5_A BRK1, protein brick1; t 26.7 2.1E+02 0.0071 21.7 8.1 57 299-355 11-67 (73)
471 2dax_A Protein C21ORF6; RWD do 26.6 34 0.0012 29.2 2.6 19 13-31 77-95 (152)
472 3rrk_A V-type ATPase 116 kDa s 26.6 1.2E+02 0.0042 29.2 7.0 41 308-348 95-138 (357)
473 3h4s_E KCBP interacting Ca2+-b 26.5 1.2E+02 0.0041 24.4 6.0 83 339-429 36-129 (135)
474 4fjo_A DNA repair protein REV1 26.5 1.1E+02 0.0037 24.2 5.4 72 338-417 11-90 (97)
475 4akv_A Sorting nexin-33; trans 26.5 4.6E+02 0.016 25.6 12.6 125 293-422 183-315 (386)
476 2q5z_A MAZG, hypothetical prot 26.5 1.3E+02 0.0045 24.3 6.1 89 315-417 24-112 (114)
477 3swf_A CGMP-gated cation chann 26.4 2E+02 0.0068 21.8 6.4 40 314-353 6-45 (74)
478 3qfl_A MLA10; coiled-coil, (CC 26.3 1.8E+02 0.0062 23.3 6.9 73 276-352 1-78 (115)
479 2yko_A LINE-1 ORF1P; RNA-bindi 26.3 1.4E+02 0.0047 27.7 6.7 50 300-349 1-50 (233)
480 1g8i_A Frequenin, neuronal cal 26.3 1.9E+02 0.0066 23.9 7.5 100 301-412 11-128 (190)
481 3nph_B Phycobilisome 32.1 kDa 26.2 28 0.00097 30.1 1.9 38 369-409 21-59 (148)
482 2r2v_A GCN4 leucine zipper; co 26.1 1.3E+02 0.0044 19.3 4.5 26 315-340 4-29 (34)
483 2gs4_A Protein YCIF; stress pr 26.0 2.6E+02 0.0089 24.2 8.3 101 296-397 10-111 (166)
484 1x79_B RAB GTPase binding effe 26.0 2.7E+02 0.0093 22.8 11.8 69 283-351 9-77 (112)
485 1yii_A Annexin A5, annexin V, 26.0 33 0.0011 33.2 2.6 110 279-395 191-311 (320)
486 2q73_A MAZG, hypothetical prot 25.9 1.7E+02 0.0057 22.9 6.5 80 315-408 4-83 (100)
487 1ukx_A GCN2, GCN2 EIF2alpha ki 25.8 28 0.00095 28.9 1.8 18 13-30 67-84 (137)
488 2joj_A Centrin protein; N-term 25.7 35 0.0012 24.2 2.2 71 339-415 3-75 (77)
489 2hh7_A Hypothetical protein CS 25.6 1.4E+02 0.0049 24.7 6.1 77 294-396 7-90 (119)
490 3zcc_A HAMP, osmolarity sensor 25.6 2.1E+02 0.007 21.2 8.6 70 283-352 40-110 (114)
491 2wt7_B Transcription factor MA 25.6 2.5E+02 0.0084 22.1 10.8 67 287-354 24-90 (90)
492 4ad8_A DNA repair protein RECN 25.6 5.3E+02 0.018 26.0 13.8 129 294-428 179-313 (517)
493 2fup_A Hypothetical protein PA 25.6 2.9E+02 0.0098 22.9 10.7 97 291-397 7-104 (157)
494 2jxu_A TERB, KP-TERB; tellurit 25.6 74 0.0025 26.7 4.6 80 348-434 38-146 (153)
495 1nkp_B MAX protein, MYC proto- 25.5 1.6E+02 0.0054 22.3 6.0 43 292-338 38-80 (83)
496 3rh3_A Uncharacterized DUF3829 25.5 4.2E+02 0.015 24.8 11.4 115 291-412 80-202 (264)
497 1r8e_A Multidrug-efflux transp 25.5 81 0.0028 29.0 5.2 60 303-365 66-126 (278)
498 3nyv_A Calmodulin-domain prote 25.4 4.8E+02 0.017 25.5 13.5 129 274-412 313-481 (484)
499 2ve7_C Kinetochore protein NUF 25.3 1.6E+02 0.0056 27.3 7.2 82 297-380 120-201 (250)
500 3nr7_A DNA-binding protein H-N 25.2 2.2E+02 0.0076 22.1 6.8 53 308-364 27-79 (86)
No 1
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=100.00 E-value=1.1e-35 Score=268.57 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEI-EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~el-e~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
++++++.+.++.+..+.+...+.++ ..|++.+.+|..|..+|++++..|+.+++.|+.++..|+++.+++++|+.. .+
T Consensus 19 ~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~-~~ 97 (174)
T 2p22_A 19 TVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST-SH 97 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 4445666666666666666667777 568999999999999999999999999999999999999999999999876 34
Q ss_pred CCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 355 KTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI 430 (434)
Q Consensus 355 k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~ 430 (434)
.+++|||+++++++++++|||+++|||+||+||||+|++||++|+|+||+|||+||.|||||||+|||++||+..+
T Consensus 98 ~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQF~~ral~~Ki~~~~ 173 (174)
T 2p22_A 98 VDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL 173 (174)
T ss_dssp CCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778999999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.96 E-value=9.1e-30 Score=225.53 Aligned_cols=85 Identities=45% Similarity=0.963 Sum_probs=83.3
Q ss_pred eeecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccCCCCCHHHHHHHHHHHhCCCCC
Q psy18020 2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLASAFSALPP 81 (434)
Q Consensus 2 v~~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~~F~~~pP 81 (434)
|.|+|.+|||||+||||++||+.||+|||+||.+|.|+.++|||.+|+||||||++|++++|||++||++|+++|++|||
T Consensus 62 v~y~g~~y~iPi~Iwlp~~YP~~pP~vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epP 141 (146)
T 3obq_A 62 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 141 (146)
T ss_dssp EECSSCEEEEEEEEECCTTTTTSCCEEEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCS
T ss_pred eeecCccccceEEEEeCccCCCCCCEEEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q psy18020 82 LYSSR 86 (434)
Q Consensus 82 l~~~~ 86 (434)
||+|+
T Consensus 142 v~sk~ 146 (146)
T 3obq_A 142 VFSRP 146 (146)
T ss_dssp EEECC
T ss_pred CccCC
Confidence 99985
No 3
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=99.95 E-value=1.4e-28 Score=186.27 Aligned_cols=63 Identities=30% Similarity=0.437 Sum_probs=61.4
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI 430 (434)
Q Consensus 368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~ 430 (434)
+|++||||+++|||+|||||||+|++||++|+|++|+|||+||.|||||||+||||+||+..+
T Consensus 2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~Ki~~~~ 64 (65)
T 2f6m_A 2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPL 64 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999999999999999999999999999999999765
No 4
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=2.4e-21 Score=174.36 Aligned_cols=80 Identities=28% Similarity=0.497 Sum_probs=73.8
Q ss_pred eeecCcc-cccceEEEecCCCCCCCCEeEEec-CCCce-----eccCCCcCCCCceeccccccccCCCCCHHHHHHHHHH
Q psy18020 2 TNLSGLV-YHIPVCIWLMDTHPDHAPICYVRP-TADMR-----INVSQNVDHTGKIYSPYLHTWTPQNSKLEGLIKTLAS 74 (434)
Q Consensus 2 v~~~g~~-y~iPi~iwl~~~yP~~~P~~~v~p-t~~m~-----i~~~~~vd~~G~~~~pyL~~W~~~~s~L~~li~~l~~ 74 (434)
|.|+|.+ |||||+||||++||+.||+|||+| |.+|. |+.++|||++|+||||||++|+++.++|.++|+.|+.
T Consensus 73 v~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~ 152 (162)
T 3r3q_A 73 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMS 152 (162)
T ss_dssp CSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHH
T ss_pred ccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHH
Confidence 5799998 999999999999999999999998 88886 4557999999999999999999989999999999999
Q ss_pred HhCCCCC
Q psy18020 75 AFSALPP 81 (434)
Q Consensus 75 ~F~~~pP 81 (434)
.|++--|
T Consensus 153 lf~ep~~ 159 (162)
T 3r3q_A 153 LLHEPPQ 159 (162)
T ss_dssp TTSCCCC
T ss_pred HhcCCCC
Confidence 9987654
No 5
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.51 E-value=1.6e-15 Score=134.22 Aligned_cols=58 Identities=41% Similarity=0.807 Sum_probs=56.8
Q ss_pred CCCCCCCCccccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCCCCCC
Q psy18020 99 GNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSS 156 (434)
Q Consensus 99 ~~~~pt~~m~~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp~~s~ 156 (434)
|||.||++|.|+.++|||.+|+||+|||++|.+++|+|.+|+++|+..|+++|||||+
T Consensus 88 vfv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~~epPv~sk 145 (146)
T 3obq_A 88 CFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSR 145 (146)
T ss_dssp EEECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHHSCSEEEC
T ss_pred EEEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHhhCCCCccC
Confidence 8999999999999999999999999999999999999999999999999999999985
No 6
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=106.60 Aligned_cols=74 Identities=46% Similarity=0.680 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
|+++||+|+|+++++|.+.+.++|+++|++++.||..|+.+|++++.+|+.+++.|+++|..|+++.++|++.+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998765
No 7
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=98.75 E-value=1.9e-09 Score=96.82 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCC-CCCcc-----ccccCcccCCCccccCCCCccccccchhHHHHHHHhhhhcCCCC
Q psy18020 92 ATNPTYNGNIRP-TADMR-----INVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPP 152 (434)
Q Consensus 92 ~~~p~~~~~~~p-t~~m~-----~~~~~~v~~~g~~~~pyl~~w~~~~s~l~~l~~~~~~~f~~~pp 152 (434)
+.+|. ||+.| |.+|. |+.++|||.+|+|++|||++|+++.|+|.+||+.|+..|+++.|
T Consensus 95 ~~PP~--v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 95 VKPPF--ISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp TSCCE--EEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred CCCCE--EEEECCCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 44454 78877 88886 55689999999999999999999999999999999999998765
No 8
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=97.85 E-value=2.5e-05 Score=69.61 Aligned_cols=62 Identities=18% Similarity=0.336 Sum_probs=52.5
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~ 78 (434)
+.+.|++|++||+.||.|.... . +-+++||.+|+|++..|.. |++ ..+|..++..+...|.+
T Consensus 58 f~~~i~fp~~YP~~PP~v~f~t-~----i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 122 (157)
T 2gjd_A 58 YPITVEYPNEYPSKPPKVKFPA-G----FYHPNVYPSGTICLSILNEDQDWRP-AITLKQIVLGVQDLLDS 122 (157)
T ss_dssp EEEEEECCTTTTTSCCEEECCT-T----CCCTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred EEEEEEcCCCCCCCCCeeeccC-C----CccCCCCCCCcEeeecccCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 5689999999999999997753 1 2357899999999999987 987 78999999999998854
No 9
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=97.84 E-value=2.2e-05 Score=70.27 Aligned_cols=67 Identities=16% Similarity=0.393 Sum_probs=54.7
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..| .+.|++|++||+.||.|... |. +-+++||.+|+|++..|.. |++ ..+|..++..+...|.+
T Consensus 56 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~~~W~p-~~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 56 WEGGLF--KLRMLFKDDYPSSPPKCKFE-PP----LFHPNVYPSGTVCLSILEEDKDWRP-AITIKQILLGIQELLNE 125 (161)
T ss_dssp TTTCEE--EEEEECCTTTTSSCCEEEES-SC----CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCEE--EEEEEcCcccCCCCCEEEEe-cC----cccCCCCCCCeEeehhcCCCCCcCC-CCcHHHHHHHHHHHHhC
Confidence 445544 57999999999999999775 21 2357899999999999985 987 78999999999988864
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=97.83 E-value=3.7e-05 Score=68.09 Aligned_cols=62 Identities=15% Similarity=0.351 Sum_probs=52.2
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+.+.|++|++||+.||.|... |. .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus 53 f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (152)
T 2aak_A 53 FKLSLQFSEDYPNKPPTVRFV-SR----MFHPNIYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCD 115 (152)
T ss_dssp EEEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHTS
T ss_pred EEEEEECCCCCCCCCCEEEEe-cC----cccCCCCCCCEEechhhcCCCCC-CCcHHHHHHHHHHHHhC
Confidence 567999999999999999774 21 235789999999999998 5987 78899999999998864
No 11
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=97.80 E-value=8.6e-05 Score=58.01 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy18020 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKT 356 (434)
Q Consensus 280 al~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~ 356 (434)
+|...+.++|+..+. |.+.+.|+||.. |+++..+|..++.+|+..|.+|+++.++++++|+.++.++
T Consensus 3 SllSAVeDKLRrrl~------E~~~q~qaEl~s----LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 3 SLISAVSDKLRWRMK------EEMDRAQAELNA----LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp CHHHHHHHHHHHHHH------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH------HHHHHHhHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888866655 678899999999 9999999999999999999999999999999999997543
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=97.74 E-value=5.2e-05 Score=66.95 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=53.7
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|.... . .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus 48 yegg~--f~~~i~fp~~YP~~PP~v~f~t-~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (150)
T 1z2u_A 48 YQGGV--FFLTIHFPTDYPFKPPKVAFTT-R----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD 115 (150)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEESS-C----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred cCCCE--EEEEEECCCCCCCCCcEEEEec-C----cccCcCCCCCeEeeccccCCCCC-CCCHHHHHHHHHHHhhC
Confidence 44544 4468999999999999987642 1 235789999999999997 7987 68999999999888854
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=97.73 E-value=4.7e-05 Score=68.41 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=53.5
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|...-. .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus 63 Yegg~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPnV~~~G~ICl~iL~~~W~P-~~ti~~vL~si~~ll~~ 130 (165)
T 2c4o_A 63 YQGGV--FFLTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSICLDILRSQWSP-ALTISKVLLSICSLLCD 130 (165)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCce--EEEEEECCCcCCCCCCEEEEecC-----CcCCcCCCCCeEeehhhcCCCCC-cCcHHHHHHHHHHHHhC
Confidence 44444 45689999999999999876421 235789999999999997 7987 68999999999888854
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=97.68 E-value=6.6e-05 Score=66.68 Aligned_cols=63 Identities=21% Similarity=0.398 Sum_probs=52.0
Q ss_pred ccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
.+.+.|.+|++||+.||.|... |. .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus 53 ~f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1jat_A 53 IFELELYLPDDYPMEAPKVRFL-TK----IYHPNIDRLGRICLDVLKTNWSP-ALQIRTVLLSIQALLAS 116 (155)
T ss_dssp EEEEEEECCTTTTTSCCEEEEC-SC----CCBTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEEEcCCCCCCCCCcceee-cc----cccCCCCCCCEEEchhhccCCCC-CCCHHHHHHHHHHHHhC
Confidence 3568899999999999999653 21 335789999999999996 7987 78999999998888865
No 15
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=97.67 E-value=7.3e-05 Score=66.46 Aligned_cols=67 Identities=21% Similarity=0.339 Sum_probs=53.6
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|... |. .=+++||.+|+|++..|.+ |++ ..++..++..+...|.+
T Consensus 53 yegg~--f~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~ 120 (156)
T 2e2c_A 53 YESLK--YKLTLEFPSDYPYKPPVVKFT-TP----CWHPNVDQSGNICLDILKENWTA-SYDVRTILLSLQSLLGE 120 (156)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHTTS
T ss_pred cCCcE--EEEEEECCCCCCCCCCEEEEe-CC----cccCCCccCceEECccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 44544 457899999999999999774 22 1257899999999999975 987 78999999999888854
No 16
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=97.66 E-value=8.4e-05 Score=65.90 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=53.4
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..| -+.|.+|++||+.||.|... |. .-+++||.+|+|++..|+ +|++ ..++..++..+...|.+
T Consensus 46 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~ 114 (154)
T 1c4z_D 46 YDKGAF--RIEINFPAEYPFKPPKITFK-TK----IYHPNIDEKGQVCLPVISAENWKP-ATKTDQVIQSLIALVND 114 (154)
T ss_dssp CCSCCE--EEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTCBBCCTTTSSSSCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCeE--EEEEEeCCCCCCCCCEEEEe-CC----CccccCCCCCEEECCCCCCCCCCC-CCcHHHHHHHHHHHHcC
Confidence 555554 46899999999999999774 22 234789999999999995 7987 67899999888887754
No 17
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=97.65 E-value=6.5e-05 Score=66.68 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=53.8
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|...-. .-+++||.+|+|++..| .+|++ ..+|..++..+...|.+
T Consensus 49 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 116 (154)
T 2c2v_B 49 FEGGT--FKLELFLPEEYPMAAPKVRFMTK-----IYHPNVDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSA 116 (154)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTCBBCCHHHHTSCCT-TCCHHHHHHHHHHHTTS
T ss_pred cCCCe--EEEEEEcCCCCCCCCCEEEeecC-----cccCcCccCCeEEchhccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 34444 45689999999999999876421 23578999999999999 78988 88999999999988864
No 18
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=97.62 E-value=8.9e-05 Score=66.26 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=53.2
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|..... .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus 48 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~ 115 (160)
T 1y8x_A 48 YKSGK--FVFSFKVGQGYPHDPPKVKCETM-----VYHPNIDLEGNVCLNILREDWKP-VLTINSIIYGLQYLFLE 115 (160)
T ss_dssp TTTBC--EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCE--EEEEEeCCCcCCCCCCEEEEecC-----CccCcCCCCCeEEcccchhhccC-CCCHHHHHHHHHHHHhC
Confidence 44444 45689999999999999877421 23578999999999999 57987 67999999999888865
No 19
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=97.61 E-value=0.00013 Score=63.56 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=48.7
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHh
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAF 76 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F 76 (434)
+-+.|.+|++||+.||.|... |. ..+-+++||.+|+|++..| ++|++ ..++..++..+...+
T Consensus 73 f~l~i~fp~~YP~~PP~v~F~-T~--i~~~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~slL 135 (136)
T 2a7l_A 73 FQLLFKFSSRYPFDSPQVMFT-GE--NIPVHPHVYSNGHICLSILTEDWSP-ALSVQSVCLSIISML 135 (136)
T ss_dssp EEEEEEECTTTTTSCCEEEEE-SS--CCCCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCCEEEEe-CC--CcCCCccCCCCCeEEchhcCCCCCC-CCcHHHHHHHHHHHh
Confidence 457888999999999998664 22 1234788999999999999 67987 678888888777654
No 20
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=97.61 E-value=9.4e-05 Score=67.42 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=53.4
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..| -+.|.+|++||+.||.|..... .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus 68 Yegg~f--~~~i~fp~~YP~~PP~v~F~t~-----i~HPNV~~~G~iCl~iL~~~W~p-~~~i~~vL~si~~ll~~ 135 (180)
T 2nvu_C 68 YKSGKF--VFSFKVGQGYPHDPPKVKCETM-----VYHPNIDLEGNVALNILREDWKP-VLTINSIIYGLQYLFLE 135 (180)
T ss_dssp GTTBCE--EEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTSBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCEE--EEEEeCCCcCCCCCCcCceecc-----CccCCCCCCCcEEcccccccCCC-CCCHHHHHHHHHHHHhC
Confidence 455544 4689999999999999877432 23578999999999999 56987 67999999999888864
No 21
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=97.60 E-value=0.00011 Score=66.33 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=53.0
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|.+||+.||.|... |. .-+++|+.+|+|++..|.+ |++ ..+|..++..+...|.+
T Consensus 48 YegG~--f~l~i~fp~~YP~~PP~v~F~-t~----i~HPNI~~~G~ICl~iL~~~WsP-~~~i~~vL~si~~ll~~ 115 (169)
T 1ayz_A 48 YEDGT--FRLLLEFDEEYPNKPPHVKFL-SE----MFHPNVYANGEICLDILQNRWTP-TYDVASILTSIQSLFND 115 (169)
T ss_dssp TTTCE--EEEEEECCTTTTTSCCEEEES-SC----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHTC
T ss_pred cCCCE--EEEEEECcccCCCCCCccccc-cC----CccCCCCCCCeEeehhhccCCCC-cCcHHHHHHHHHHHHhC
Confidence 44444 456899999999999999774 22 2357899999999999974 987 77899999999888853
No 22
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=97.57 E-value=7.6e-05 Score=66.51 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=53.2
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|...-. .-+++||.+|+|++..|. +|.+ ..++..++..+...|.+
T Consensus 57 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~ 124 (158)
T 1zdn_A 57 YAGGL--FRMKLLLGKDFPASPPKGYFLTK-----IFHPNVGANGEICVNVLKRDWTA-ELGIRHVLLTIKCLLIH 124 (158)
T ss_dssp TTTCE--EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTSBBCHHHHTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCcE--EEEEEEcCCCCCCCCCEEEeccC-----cccCCCCCCCEEehhhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 34444 45689999999999999977432 235789999999999886 8987 78999999888887754
No 23
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=97.56 E-value=0.00012 Score=65.47 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=52.7
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHH
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLI 69 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li 69 (434)
|.|..| -+.|.+|++||+.||.|..... +-+++||.+|+|++..| .+|++ ..++..++
T Consensus 48 yegg~f--~~~i~fp~~YP~~PP~v~f~t~-----i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~ti~~vL 119 (164)
T 3h8k_A 48 FEFGVF--PAILSFPLDYPLSPPKMRFTCE-----MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP-VQSVEKIL 119 (164)
T ss_dssp TTTCEE--EEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCT-TCCHHHHH
T ss_pred CCCCEE--EEEEECCCCCCCCCCEEEEcCC-----CccCCCCCCCcEeeecccCcccccccccccccCCCC-CCcHHHHH
Confidence 444444 4788899999999999866432 33577999999999999 47887 77899999
Q ss_pred HHHHHHhCC
Q psy18020 70 KTLASAFSA 78 (434)
Q Consensus 70 ~~l~~~F~~ 78 (434)
..+...|.+
T Consensus 120 ~~i~~ll~~ 128 (164)
T 3h8k_A 120 LSVVSMLAE 128 (164)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 888887764
No 24
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=97.54 E-value=0.00016 Score=64.50 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=53.5
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|..... .-+++|| .+|+|++..|.+ |++ ..++..++..+...|..
T Consensus 55 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 123 (159)
T 2bep_A 55 YEGGR--YQLEIKIPETYPFNPPKVRFITK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA 123 (159)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred ccCCE--EEEEEeCCCcCCCCCCEEEeeCC-----CCccCCCCCCCEEeChhhhccCCC-CCcHHHHHHHHHHHHhC
Confidence 44444 45899999999999999977421 2358899 499999999986 987 78999999999888864
No 25
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=97.54 E-value=0.00017 Score=61.77 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=49.9
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|... |. |.-+++||.+|+|++..| ++|++ ..++..++..+...|..
T Consensus 55 f~~~i~fp~~YP~~PP~v~f~-t~---i~~HPnv~~~G~iCl~iL~~~W~P-~~~i~~vl~si~~ll~~ 118 (125)
T 2fo3_A 55 YKLKIIFPDDYPLKPPIVYFL-QK---PPKHTHVYSNGDICLSLLGDDYNP-SLSISGLVLSIISMLSS 118 (125)
T ss_dssp EEEEEECCTTTTTSCCEEEEC-SS---CCCBTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHC-
T ss_pred EEEEEEcCCCCCCCCCEEEEe-CC---CCCCCcCCCCCEEEchhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 457888999999999998663 21 234578999999999999 67987 78899998888877653
No 26
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=97.53 E-value=0.00019 Score=62.41 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=50.5
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|... |. |.-+++||.+|+|++..|. +|++ ..++..++..+...|..
T Consensus 69 f~~~i~fp~~YP~~PP~v~f~-t~---i~~HPnv~~~G~ICl~iL~~~WsP-~~ti~~vL~si~sll~~ 132 (136)
T 2h2y_A 69 YKIKIIFPDNYPLKPPIVYFL-QK---PPKHTHVYSNGDICLSVLGDDYNP-SLSISGLILSIISMLSS 132 (136)
T ss_dssp EEEEEECCTTTTTSCCEEEEC-SS---CCCCTTBCTTCCBCCGGGTTTCCT-TCCHHHHHHHHHHHHSS
T ss_pred EEEEEEeCCCCCCCCCEEEEe-CC---CCCCCcCCCCCEEECccccCCCCC-CCcHHHHHHHHHHHHhC
Confidence 457889999999999998663 21 2345789999999999996 7887 78999998888877753
No 27
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=97.52 E-value=0.00015 Score=64.39 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=52.1
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+.+.|.+|++||+.||.|..... .-+++||.+|+|++..| .+|++ ..+|..++..+...|.+
T Consensus 53 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnV~~~G~iCl~iL~~~~W~p-~~~i~~vl~~i~~ll~~ 116 (155)
T 1wzv_A 53 FNLRISFPPEYPFKPPMIKFTTK-----IYHPNVDENGQICLPIISSENWKP-CTKTCQVLEALNVLVNR 116 (155)
T ss_dssp EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTCBCCCGGGCTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCCCcceeeCC-----CccCcCCCCCeEeecCCCccCCCC-CCcHHHHHHHHHHHHhC
Confidence 56889999999999999977432 23578999999999999 78987 77999999999988864
No 28
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=97.47 E-value=0.0002 Score=63.15 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=50.8
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-. .-+++||.+|+|++..|. +|++ ..++..++..+...|.+
T Consensus 50 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 112 (149)
T 2r0j_A 50 YKLELFLPEQYPMEPPKVRFLTK-----IYHPNIDKLGRICLDILKDKWSP-ALQIRTVLLSIQALLSS 112 (149)
T ss_dssp EEEEEECCTTTTTSCCEEEECSC-----CCBTTBCTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHHHS
T ss_pred EEEEEeCCcccCCCCCeeEeccC-----CccCCCCCCCEEechhcCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 45788999999999999866422 235789999999999997 8987 78999999998887754
No 29
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=97.47 E-value=0.0002 Score=63.33 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=50.8
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.++++||+.||.|... |. .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus 53 f~~~i~fp~~YP~~pP~v~f~-t~----i~HPnv~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 115 (151)
T 4gpr_A 53 FFLDVHFPVDYPFKAPRVTFM-TK----VYHPNINKNGVICLDILKDQWSP-ALTLSRVLLSISSLLTD 115 (151)
T ss_dssp EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCCCcceeEEe-cC----cccceECCCCEEEcccccCCCCC-CCcHHHHHHHHHHHhcC
Confidence 457888999999999998663 22 23578999999999999 78987 68899999999888764
No 30
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=97.43 E-value=0.00025 Score=63.67 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=53.0
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-------cccCCCCCHHHHHHHHHHHh
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-------TWTPQNSKLEGLIKTLASAF 76 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-------~W~~~~s~L~~li~~l~~~F 76 (434)
|.|..| -+.|.+|++||+.||.|..... .-+++||.+|+|++..|. +|++ ..++..++..+...|
T Consensus 58 yegg~f--~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~iL~~~~~~~~~W~p-~~~i~~vl~~i~~ll 129 (167)
T 3fn1_B 58 YQGGKF--QFETEVPDAYNMVPPKVKCLTK-----IWHPNITETGEICLSLLREHSIDGTGWAP-TRTLKDVVWGLNSLF 129 (167)
T ss_dssp TTTCCE--EEEEECCTTBTTBCCEEEECSC-----CCCSSBCTTCCBCCGGGSBCSSSTTSBCT-TCCHHHHHHHHHHTT
T ss_pred cCCCEE--EEEEECCCCCCCCCCeeEecCC-----cccCCCCCCCEEechhhccCCCCCCCCCC-cCcHHHHHHHHHHHH
Confidence 445444 4788899999999999866322 236789999999999998 4876 789999999988877
Q ss_pred CC
Q psy18020 77 SA 78 (434)
Q Consensus 77 ~~ 78 (434)
.+
T Consensus 130 ~~ 131 (167)
T 3fn1_B 130 TD 131 (167)
T ss_dssp TT
T ss_pred cC
Confidence 65
No 31
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=97.40 E-value=0.0002 Score=63.05 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=51.2
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|... |. .=+++||. +|+|++..|. +|++ ..++..++..+...|.+
T Consensus 51 f~~~i~fp~~YP~~PP~v~f~-t~----i~HPni~~~~G~iCl~iL~~~W~p-~~~i~~vl~~i~~ll~~ 114 (149)
T 1fxt_A 51 FVVDIEVPMEYPFKPPKMQFD-TK----VYHPNISSVTGAICLDILKNAWSP-VITLKSALISLQALLQS 114 (149)
T ss_dssp EEEEEECCTTTTSSCCEEEES-SC----CCBTTBCSSSCCBCCHHHHTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCCCEEEEe-CC----CccCCCcCCCCeEeCCcCCCCCCC-CCcHHHHHHHHHHHHhC
Confidence 458999999999999999774 21 23578998 9999999996 5987 78999999999888855
No 32
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=97.37 E-value=0.0003 Score=63.97 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=50.4
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-. .=+++||.+|+|++..|. +|.+ ..+|..++..+...|.+
T Consensus 79 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 141 (179)
T 1i7k_A 79 YKLSLEFPSGYPYNAPTVKFLTP-----CYHPNVDTQGNISLDILKEKWSA-LYDVRTILLSIQSLLGE 141 (179)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CCSTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcCCCCCceEEEecC-----CccCccccCCeEEcccCcCcCCC-CCCHHHHHHHHHHHHhC
Confidence 55788999999999999876432 235789999999999997 4987 78899999888887753
No 33
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=97.37 E-value=0.00023 Score=63.40 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=53.3
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCce---eccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKI---YSPYLHTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~---~~pyL~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.+|++||+.||.|...-. .-.++||.+|+| ++..|.+|++ ..++..++..+...|.+
T Consensus 69 YegG~--f~l~i~fp~~YP~~PP~v~F~t~-----i~HPNV~~~G~icisCL~iL~~WsP-~~ti~~vL~sI~~ll~~ 138 (156)
T 2q0v_A 69 FENRI--YSLTIFCDDNYPDSPPTVKFDTK-----IEMSCVDNCGRVIKNNLHILKNWNR-NYTIETILISLRQEMLS 138 (156)
T ss_dssp TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTSBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHTTS
T ss_pred cCCcE--EEEEEECCCcCCCCCCeEEEEcc-----cccCCCccCCeEehhhcccccCCCC-cCcHHHHHHHHHHHHhC
Confidence 44444 45788999999999999866422 235789999999 8888999988 78999999998888764
No 34
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=97.34 E-value=0.00035 Score=62.57 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=50.2
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHHHHHHHHh
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLIKTLASAF 76 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li~~l~~~F 76 (434)
+-+.|.+|++||+.||.|..... .-+++||.+|+|++..| .+|++ ..++..++..+...|
T Consensus 54 f~~~i~fp~~YP~~PP~v~f~t~-----i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p-~~~i~~vL~si~~ll 127 (165)
T 2ucz_A 54 FNAKLEFPKDYPLSPPKLTFTPS-----ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP-VQSVEKILLSVMSML 127 (165)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCT-TCCHHHHHHHHHHHH
T ss_pred EEEEEECCccCCCCCCEEEEeCC-----CccCCCCCCCcEeehhhCCccccccccCCCCCCCCC-cCcHHHHHHHHHHHH
Confidence 45788999999999999976432 23577999999999999 57887 678999998888877
Q ss_pred CC
Q psy18020 77 SA 78 (434)
Q Consensus 77 ~~ 78 (434)
.+
T Consensus 128 ~~ 129 (165)
T 2ucz_A 128 SE 129 (165)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 35
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=97.33 E-value=0.00039 Score=62.25 Aligned_cols=67 Identities=16% Similarity=0.394 Sum_probs=53.3
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc---ccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT---WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~---W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..|. +.|.++++||+.||.|... |. +-+++||.+|+|++..|.. |++ ..++..++..+...|.+
T Consensus 59 yegg~f~--l~i~fp~~YP~~pP~v~F~-t~----i~HPnV~~~G~iCl~iL~~~~~W~p-~~ti~~vL~~i~~ll~~ 128 (163)
T 3rcz_B 59 WEGGLYK--LTMAFPEEYPTRPPKCRFT-PP----LFHPNVYPSGTVCLSILNEEEGWKP-AITIKQILLGIQDLLDD 128 (163)
T ss_dssp TTTCEEE--EEEECCTTTTTSCCEEEES-SC----CCSTTBCTTSBBCCGGGCTTTTCCT-TCCHHHHHHHHHHHHTS
T ss_pred cCCCEEE--EEEECCCCCCCCCCEEEEe-CC----CccCCCCCCCcEeccccCCCCCcCC-cCcHHHHHHHHHHHHhC
Confidence 4444444 7888999999999998764 21 3457899999999999975 987 68999999999988843
No 36
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=97.25 E-value=0.00046 Score=63.22 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc----ccccCCCCCHHHHHHHHHHHhCCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL----HTWTPQNSKLEGLIKTLASAFSAL 79 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL----~~W~~~~s~L~~li~~l~~~F~~~ 79 (434)
|.|.. +-+.|.+|++||+.||.|... |. +.+++.+|+|++..| ++|.+ ..++..++..+...|.+.
T Consensus 58 YegG~--f~l~i~fP~~YP~~PP~v~f~-T~------~~~~~~~G~ICL~iL~~~~~~W~P-~~ti~~vL~si~sll~~p 127 (187)
T 2f4w_A 58 YEGGY--YHGKLIFPREFPFKPPSIYMI-TP------NGRFKCNTRLCLSITDFHPDTWNP-AWSVSTILTGLLSFMVEK 127 (187)
T ss_dssp TTTCE--EEEEEECCTTTTSSCCEEEEC-SC------CSSBCTTSCBC----------CCT-TCCHHHHHHHHHHHHHSC
T ss_pred CCCCE--EEEEEEcCCCCCCCCCccccc-CC------CceeccCCeEeeeccccCccCCCC-cCcHHHHHHHHHHHhcCC
Confidence 44444 457888999999999998663 32 567889999999999 68987 789999988888877553
No 37
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=97.23 E-value=0.00048 Score=61.85 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=50.7
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|... |. .-.++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus 70 f~l~i~fp~~YP~~PP~V~F~-T~----i~HPNI~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 70 FFLNIHFPSDYPFKPPKVNFT-TK----IYHPNINSQGAICLDILKDQWSP-ALTISKVLLSISSLLTD 132 (166)
T ss_dssp EEEEEECCTTTTSSCCEEEEC-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEeCCCcCCCCCceeeec-cC----CcCCcCCCCCeEEcccccccCCC-CCcHHHHHHHHHHHHhC
Confidence 557899999999999998663 21 124789999999999997 7987 68999999998888754
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=97.23 E-value=0.00048 Score=63.24 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=52.8
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..| -+.|-+|++||+.||.|... |. .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus 77 yegg~f--~~~i~fp~~YP~~PP~v~f~-t~----i~HPnV~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~ 144 (190)
T 3o2u_A 77 YNYGSI--NFNLDFNEVYPIEPPKVVCL-KK----IFHPNIDLKGNVCLNILREDWSP-ALDLQSIITGLLFLFLE 144 (190)
T ss_dssp TTTCCE--EEEEECCTTTTTSCCEEEEC-SC----CCCTTBCTTSBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCEE--EEEEECCCCCCCCCceeEEe-cC----cccCCCCCCCeEechhccCCCCC-CCCHHHHHHHHHHHHhC
Confidence 444444 47788899999999998764 21 23578999999999988 67877 88999999888887754
No 39
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=97.22 E-value=0.00067 Score=61.26 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=50.5
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--------------cccCCCCCHHHHHHHHHHHh
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--------------TWTPQNSKLEGLIKTLASAF 76 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--------------~W~~~~s~L~~li~~l~~~F 76 (434)
+-+.|.+|++||+.||.|..... .-+++||.+|+|++-.|. +|++ ..+|..++..+...|
T Consensus 67 f~~~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP-~~ti~~vL~sI~sll 140 (172)
T 2awf_A 67 FKAHLTFPKDYPLRPPKMKFITE-----IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLP-IHTVETIMISVISML 140 (172)
T ss_dssp EEEEEECCTTTTSSCCEEEECSC-----CCCTTBCTTCBBCCGGGSCC---------CTTSCCT-TCCHHHHHHHHHHHH
T ss_pred EEEEEECCcccCCCCCcccccCC-----CccCCCCCCCcEehhhcCCcccccccccccCCCCCC-cCcHHHHHHHHHHHH
Confidence 45788999999999999866422 135789999999999985 6887 678999999998888
Q ss_pred CC
Q psy18020 77 SA 78 (434)
Q Consensus 77 ~~ 78 (434)
.+
T Consensus 141 ~~ 142 (172)
T 2awf_A 141 AD 142 (172)
T ss_dssp SC
T ss_pred HC
Confidence 65
No 40
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=97.22 E-value=0.00054 Score=61.64 Aligned_cols=62 Identities=16% Similarity=0.324 Sum_probs=50.2
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-----cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-----TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-----~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...- . .-+++||.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus 53 f~~~i~fp~~YP~~PP~v~f~t-~----i~HPNv~~~G~iCl~iL~~~~~~~W~p-~~~i~~vL~si~~ll~~ 119 (169)
T 1yh2_A 53 FKLEVIIPERYPFEPPQIRFLT-P----IYHPNIDSAGRICLDVLKLPPKGAWRP-SLNIATVLTSIQLLMSE 119 (169)
T ss_dssp EEEEEECCTTTTSSCCEEEESS-C----CCBTTBCTTCBBCCGGGSCTTTSCCCT-TSCHHHHHHHHHHHHHS
T ss_pred EEEEEEeCCCCCCCCcEEEeec-C----CccccCCcCCeEecccccCCcccCCCC-CCcHHHHHHHHHHHHhC
Confidence 4578889999999999987642 2 235789999999999985 8987 67899999888887754
No 41
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=97.21 E-value=0.00059 Score=62.20 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=51.7
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc--------------ccccCCCCCHHHHH
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL--------------HTWTPQNSKLEGLI 69 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL--------------~~W~~~~s~L~~li 69 (434)
|.|..| -+.|-+|++||+.||.|..... .=+++|+.+|+|++-.| .+|++ ..++..++
T Consensus 52 yegg~f--~~~i~fp~~YP~~PP~v~f~t~-----i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p-~~~i~~vL 123 (183)
T 3rz3_A 52 YEGGYF--KARLKFPIDYPYSPPAFRFLTK-----MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNP-TQNVRTIL 123 (183)
T ss_dssp TTTCEE--EEEEECCTTTTSSCCEEEESSC-----CCCTTBCTTSBBCCTTC--------------CCCCT-TCCHHHHH
T ss_pred CCCCeE--EEEEECCCCCCCCCCeeEecCC-----CccCCCCCCCcEehhhcCcccccccccccccCCCCC-cCcHHHHH
Confidence 444444 4788899999999999876422 23577999999999999 56987 77799988
Q ss_pred HHHHHHhCC
Q psy18020 70 KTLASAFSA 78 (434)
Q Consensus 70 ~~l~~~F~~ 78 (434)
..+...|.+
T Consensus 124 ~si~~ll~~ 132 (183)
T 3rz3_A 124 LSVISLLNE 132 (183)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 888887743
No 42
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=97.15 E-value=0.00081 Score=60.64 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=52.0
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc---ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL---HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL---~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|.++++||+.||.|...-. .-+++|| .+|+|++..| .+|++ ..++..++..+...|..
T Consensus 83 YegG~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~vL~sI~~ll~~ 153 (170)
T 2hlw_A 83 YENRI--YSLKIECGPKYPEAPPFVRFVTK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVVLQELRRLMMS 153 (170)
T ss_dssp TSSCC--BCEEEECCSSCTTSCCEEEECBC-----CCCSSBCSSSCBBCTTTCHHHHTCCS-SCCHHHHHHHHHHHHHS
T ss_pred cCCcE--EEEEEECCCCCCCCCCeeEEecc-----cccCCEeCCCCEEEhhhcCCCCCCCc-cCcHHHHHHHHHHHHcc
Confidence 44444 45788999999999999866421 1347898 7999998877 68987 78999999988888854
No 43
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=97.14 E-value=0.00088 Score=59.81 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=51.8
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc---ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL---HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL---~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|-++++||+.||.|...-. .-.++|| .+|+|++.+| .+|++ ..++..++..+...|..
T Consensus 73 YegG~--f~l~i~fp~~YP~~PP~v~F~T~-----i~HPNV~~~~G~ICl~iL~~~~~WsP-~~ti~~vL~sI~~ll~~ 143 (160)
T 2a4d_A 73 YENRI--YSLKIECGPKYPEAPPFVRFVTK-----INMNGVNSSNGVVDPRAISVLAKWQN-SYSIKVVLQELRRLMMS 143 (160)
T ss_dssp TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTTCBBCGGGSHHHHTCCT-TCCHHHHHHHHHHHHTS
T ss_pred ccCeE--EEEEEECCCcCCCCCcEEEEecC-----ceeCCEECCCCEEehhhcCCccCCCc-cCcHHHHHHHHHHHHcc
Confidence 44444 45788999999999999866421 1347898 6999998877 58987 78999999999988854
No 44
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=97.13 E-value=0.00085 Score=61.77 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=50.9
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|... |. .-+++||.+|+|++..|. +|.+ ..+|..++..+...|..
T Consensus 97 f~l~i~fp~~YP~~PP~V~F~-T~----i~HPNV~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~~ll~~ 159 (194)
T 3bzh_A 97 FFLDITFTPEYPFKPPKVTFR-TR----IYHCNINSQGVICLDILKDNWSP-ALTISKVLLSICSLLTD 159 (194)
T ss_dssp EEEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcCCCCCcccccc-CC----CccceECCCCceechhhhccCCC-cCcHHHHHHHHHHHHhC
Confidence 567888999999999998774 21 235889999999999997 6887 78999999888887754
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=97.08 E-value=0.00069 Score=58.87 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=52.3
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCC-Cce--eccccccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHT-GKI--YSPYLHTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~-G~~--~~pyL~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|.. +-+.|-++++||+.||.|...-. .-+++||.+ |+| ++..|.+|++ ..++..++..+...|.+
T Consensus 54 yegg~--f~~~i~fp~~YP~~PP~v~f~t~-----i~HPnv~~~~G~i~~cL~~l~~W~p-~~~i~~vl~~i~~ll~~ 123 (138)
T 1jat_B 54 HENRI--YSLSIDCGPNYPDSPPKVTFISK-----INLPCVNPTTGEVQTDFHTLRDWKR-AYTMETLLLDLRKEMAT 123 (138)
T ss_dssp TTTCE--EEEEEECCTTTTTSCCEEEESBC-----CCCTTBCTTTCBBCTTSHHHHTCCT-TCCHHHHHHHHHHHHTS
T ss_pred ccceE--EEEEEECCCCCCCCCCceEEEcc-----cccCCEeCCCCEEeeecccCCCCCC-cCcHHHHHHHHHHHHcC
Confidence 44444 45788899999999999866321 235789997 999 7777889988 78999999998888754
No 46
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=97.05 E-value=0.00094 Score=62.45 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=51.1
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceeccccc-cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYLH-TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL~-~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|..... .=+++||. +|+|++..|. +|++ ..++..++..+...|..
T Consensus 52 f~l~i~fP~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~ 115 (215)
T 1tte_A 52 FVVDIEVPMEYPFKPPKMQFDTK-----VYHPNISSVTGAICLDILRNAWSP-VITLKSALISLQALLQS 115 (215)
T ss_dssp CEEEEECCSCSSSCCCEEEETTT-----CCCSSSCSSSSCCCSSTTTCCSCT-TCCHHHHHHHHHHHHTS
T ss_pred EEEEEeCCccCCCCCCcccccCC-----CccCcCcCCCCEEECccCCCCCCC-cCcHHHHHHHHHHHHhC
Confidence 56788999999999999876321 23578999 9999999997 5887 78999999999888865
No 47
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=97.03 E-value=0.0009 Score=60.39 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=51.1
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc--cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-+ -.-+++|| .+|+|++..|+ +|++ ..+|..++..+...|.+
T Consensus 67 f~~~i~fp~~YP~~PP~v~f~t~----~i~HPni~~~~G~iCl~iL~~~~W~p-~~~i~~vL~si~~ll~~ 132 (172)
T 2y9m_A 67 FRILIEVPSSYPMNPPKISFMQN----NILHCNVKSATGEICLNILKPEEWTP-VWDLLHCVHAVWRLLRE 132 (172)
T ss_dssp EEEEEECCTTTTTSCCEEEECTT----SCCCTTEETTTTEECCGGGSTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcCCCCCCEEEEeeC----CeecCCCcCCCCEEeccccCCCCCCC-cCcHHHHHHHHHHHHhC
Confidence 45788999999999999977532 12357896 79999999996 8987 77899999888887754
No 48
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=97.02 E-value=0.00078 Score=60.66 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=51.4
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCc-CCCCceeccccc---cccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNV-DHTGKIYSPYLH---TWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~v-d~~G~~~~pyL~---~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...- . .-+++| +.+|+|++..|. +|++ ..+|..++..+...|.+
T Consensus 72 f~l~i~fp~~YP~~PP~V~F~T-~----i~HPNI~~~~G~ICL~iL~~~~~WsP-~~ti~~vL~sI~sll~~ 137 (169)
T 1yrv_A 72 FQLTIHFTSEYNYAPPVVKFIT-I----PFHPNVDPHTGQPCIDFLDNPEKWNT-NYTLSSILLALQVMLSN 137 (169)
T ss_dssp EEEEEECCTTBTTBCCEEEESS-C----CCCTTBCTTTCCBCCHHHHCGGGCCT-TCCHHHHHHHHHHHHTS
T ss_pred EEEEEECCccCCCCCCcceecC-C----CccCcccCCCCeEeehhhcCCcCCCC-cCCHHHHHHHHHHHHhC
Confidence 4578999999999999987642 1 235788 799999999996 8987 78999999999988864
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=97.01 E-value=0.0006 Score=62.39 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=51.2
Q ss_pred ccceEEEecCCCCCCCCEeEEecCCCceeccCC-CcCCCCceeccccc--cccCCCCCHHHHHHHHHHHhCCC
Q psy18020 10 HIPVCIWLMDTHPDHAPICYVRPTADMRINVSQ-NVDHTGKIYSPYLH--TWTPQNSKLEGLIKTLASAFSAL 79 (434)
Q Consensus 10 ~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~-~vd~~G~~~~pyL~--~W~~~~s~L~~li~~l~~~F~~~ 79 (434)
.+-+.|-+|++||+.||.|.+.. + +-++ +||.+|+|++..|. +|++ ..++..++..+...|.+-
T Consensus 90 ~f~l~i~fp~~YP~~PP~V~f~t-p----i~hPnnV~~~G~ICL~iL~~~~WsP-~~ti~~VL~sI~slL~~p 156 (186)
T 1zuo_A 90 YILLNFSFKDNFPFDPPFVRVVL-P----VLSGGYVLGGGALCMELLTKQGWSS-AYSIESVIMQINATLVKG 156 (186)
T ss_dssp SEEEEEECCTTTTSSCCEEEEEE-S----CEESTTBCGGGBBCCGGGSTTTCCT-TSCHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCCCCCeEEEeC-C----ccCCCccCCCCcEEeccCCCCCCCC-cCcHHHHHHHHHHHHcCC
Confidence 36789999999999999986532 1 1134 79999999999996 7987 789999998888877653
No 50
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=96.98 E-value=0.0016 Score=64.33 Aligned_cols=72 Identities=18% Similarity=0.396 Sum_probs=55.6
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccc--------cccCCCCCHHHHHHHHHHHhCCCCCc
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLH--------TWTPQNSKLEGLIKTLASAFSALPPL 82 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~--------~W~~~~s~L~~li~~l~~~F~~~pPl 82 (434)
+-+.|.+|.+||+.||.|...-..+-.++=+++||.+|+|++..|. +|++.-++|..++..++..|...=|-
T Consensus 129 F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn 208 (323)
T 3ceg_A 129 FEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPY 208 (323)
T ss_dssp EEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGG
T ss_pred EEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCC
Confidence 4578889999999999987754333344557889999999999996 68774458999999999888643343
No 51
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=96.86 E-value=0.002 Score=59.50 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=52.1
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..| -+.|.+|++||+.||.|... |. .=+++||. +|+|++..| .+|.+ ..++..++..+...|..
T Consensus 52 yegg~f--~~~i~fp~~YP~~pP~v~f~-t~----i~HPnv~~~~G~iCl~iL~~~W~p-~~~i~~vL~~i~~ll~~ 120 (201)
T 3k9o_A 52 YEGGRY--QLEIKIPETYPFNPPKVRFI-TK----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA 120 (201)
T ss_dssp TTTCEE--EEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTTCBBCCGGGTTTCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCEE--EEEEECCCcCCCCCCccccc-cC----cccCCCcCCCCeeeCcccccCCCC-CCCHHHHHHHHHHHhcC
Confidence 444444 57888999999999998764 21 23578994 999999999 67877 78999999888887754
No 52
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=96.86 E-value=0.0021 Score=57.61 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=48.0
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHH-HHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEG-LIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~-li~~l~~~F~~ 78 (434)
+-+.|.++++||+.||.|..... .-+++||.+|+|++-.| .+|++ ..++.. ++..+...|..
T Consensus 71 f~~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vll~~l~~l~~~ 134 (167)
T 4ds2_A 71 YQLSVLFSDDYPHEPPTVRFVTP-----VYSPLVTGEGGICDRMVNDFWTP-DQHASDVIKLVLDRVFSQ 134 (167)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CCCSSCCTTSCCCTHHHHTTCCT-TSCHHHHHHHHHHHHHTS
T ss_pred EEEEEECCCCCCCCCCEEEEeCC-----cccccCCCCCEEEcccCcCCCCC-CCChHHHHHHHHHHHHhc
Confidence 45788899999999999876422 23578999999999888 67887 677776 45667777765
No 53
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=96.80 E-value=0.0025 Score=58.63 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=50.4
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-. .-+++|| .+|+|++..|.+ |.+ ..+|..++..+...|..
T Consensus 94 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~sll~~ 157 (193)
T 2f4z_A 94 FTLDIVIPPDYPYNPPKMKFVTK-----IWHPNISSQTGAICLDILKHEWSP-ALTIRTALLSIQAMLAD 157 (193)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTTCCT-TSCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcCCCCCCeEEEecC-----CccCCCcCCCCEEECccccccCCC-CCCHHHHHHHHHHHHhC
Confidence 56788999999999999876422 2357898 599999999986 987 78899999888887754
No 54
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=96.54 E-value=0.0041 Score=63.32 Aligned_cols=67 Identities=18% Similarity=0.335 Sum_probs=52.6
Q ss_pred ecCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 4 LSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 4 ~~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
|.|..|. +.|.+|++||+.||.|..... .-+++||.+|+|++..| .+|++ ..++..++..+...|.+
T Consensus 47 yegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~il~~~W~p-~~~i~~vL~~i~~ll~~ 114 (399)
T 4ddg_A 47 YQGGVFF--LTIHFPTDYPFKPPKVAFTTR-----IYHPNINSNGSISLDILRSQWSP-ALTISKVLLSICSLLCD 114 (399)
T ss_dssp STTCEEE--EEEECCSSTTTSCCEEEESSC-----CCCTTBCTTCBBCCGGGTTSCCT-TCCHHHHHHHHHHHHHS
T ss_pred CCCCEEE--EEEECCcccCCCCcEEEeecc-----ccccccCCCCeEeCcccccCCCc-cccHHHHHHHHHHHHcC
Confidence 4555554 788899999999999866421 23578999999999999 57877 78899998888887764
No 55
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=96.47 E-value=0.0016 Score=59.15 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=47.7
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcCC-CCceecccc-ccccCCCCCHHHHHHH-HHHHhC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDH-TGKIYSPYL-HTWTPQNSKLEGLIKT-LASAFS 77 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~-~G~~~~pyL-~~W~~~~s~L~~li~~-l~~~F~ 77 (434)
+-+.|.+|++||+.||.|...-. .-+++||. +|+|++..| .+|++ ..++..++.. +...|.
T Consensus 70 f~l~i~fp~~YP~~PP~V~F~t~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~iL~s~I~~Ll~ 133 (179)
T 2z5d_A 70 WKVRVDLPDKYPFKSPSIGFMNK-----IFHPNIDEASGTVCLDVINQTWTA-LYDLTNIFESFLPQLLA 133 (179)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTTHHHHTHHHHHHH
T ss_pred EEEEeeCCCCCCCCCceEEEecC-----CccCcCCCCCCeEeccccccCCCC-CCCHHHHHHHHHHHHHh
Confidence 45788999999999999876421 23578999 999999988 67987 6788887777 666654
No 56
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=96.46 E-value=0.0018 Score=58.43 Aligned_cols=61 Identities=21% Similarity=0.337 Sum_probs=46.4
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc-cccCCCCCHHHHHHHH-HHHhC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH-TWTPQNSKLEGLIKTL-ASAFS 77 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~-~W~~~~s~L~~li~~l-~~~F~ 77 (434)
+-+.|.++++||+.||.|... |. .-+++|| .+|+|++..|. +|++ ..++..++..+ ...+.
T Consensus 57 f~~~i~fp~~YP~~PP~v~F~-t~----i~HPNi~~~~G~iCl~iL~~~W~p-~~~i~~vL~sil~~ll~ 120 (171)
T 1yf9_A 57 WMLHVQLPSDYPFKSPSIGFC-NR----ILHPNVDERSGSVCLDVINQTWTP-MYQLENIFDVFLPQLLR 120 (171)
T ss_dssp EEEEEECCTTTTTSCCEEEES-SC----CCBTTBCTTTCBBCHHHHHHHCCT-TCCTHHHHHTHHHHHHH
T ss_pred EEEEEEcCCCCCCCCCeEEee-cC----cccccCcccCCeEeccccccCCCC-CCcHHHHHHHHHHHHHh
Confidence 457888999999999998764 21 2357899 59999999996 7987 67788877665 34443
No 57
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.42 E-value=0.0035 Score=58.62 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=50.3
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccccc-ccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLHT-WTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~~-W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-. .=+++|| .+|+|++..|.+ |++ ..+|..++..+...|..
T Consensus 72 f~l~i~fP~~YP~~PP~V~F~T~-----i~HPNI~~~~G~ICL~iL~~~WsP-~~ti~~VL~sI~sLL~~ 135 (216)
T 2pwq_A 72 FTLAITIPNDYPYNPPKIKFVTK-----IWHPNISSQTGAICLDVLKNEWSP-ALTIRTALLSIQALLSD 135 (216)
T ss_dssp EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCHHHHHHCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCcCCCCCCcccccCC-----CcCCCCcCCCCEEEchhhcccCCC-CCcHHHHHHHHHHHHhC
Confidence 46788999999999999866422 2357898 589999999975 987 78999999988888764
No 58
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.33 E-value=0.007 Score=57.86 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=49.7
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceecccc-ccccCCCCCHHHHHHHHHHHhCC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYL-HTWTPQNSKLEGLIKTLASAFSA 78 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL-~~W~~~~s~L~~li~~l~~~F~~ 78 (434)
+-+.|.+|++||+.||.|...-. .=+++|| .+|+|++..| .+|.+ ..++..++..+...|..
T Consensus 109 f~l~i~fp~~YP~~PP~V~F~T~-----i~HPNV~~~~G~ICL~iL~~~WsP-~~ti~~vL~sI~~ll~~ 172 (253)
T 3e46_A 109 YQLEIKIPETYPFNPPKVRFITK-----IWHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQALLAA 172 (253)
T ss_dssp EEEEEECCTTTTSSCCEEEESSC-----CCBTTBCTTTCBBCCGGGTTCCCT-TCCHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCCCCeeeecCC-----CccCCccCCCCeeecccccCCCCC-CCCHHHHHHHHHHHhcC
Confidence 45788899999999999866421 2347899 4999999999 67877 78999999888887754
No 59
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=96.28 E-value=0.082 Score=48.36 Aligned_cols=121 Identities=10% Similarity=0.040 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHH
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQIL 375 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~ 375 (434)
.+.+++.+...-++|...+..|+..+..++..-..++........+..+++..|.. ....|. ++..|-
T Consensus 67 ~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~-----~~sp~~-------L~~~L~ 134 (192)
T 2p22_C 67 FAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSK-----KYGDIA-------LKKKLE 134 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSSHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCHHH-------HHHHHH
Confidence 34444444333333333333333333333333333333333333344444333321 234444 888888
Q ss_pred HhhHHHHhhhhHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 376 NTFTEEAATEDTIYYMGEALRRG--VIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS 431 (434)
Q Consensus 376 ~l~Aed~AieDtiy~L~~aL~~g--~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~ 431 (434)
..++|-.+-.|.| .+-|..| .|+++.||++.|..-+.--+.|.-..+...+..
T Consensus 135 ~a~~e~eeeS~~l---~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw~e~~~ 189 (192)
T 2p22_C 135 QNTKKLDEESSQL---ETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATWDKQGN 189 (192)
T ss_dssp HHHHHHHHHHHHH---HHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHH---HHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888766666554 4566666 799999999999887766666666665554433
No 60
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=96.23 E-value=0.0036 Score=55.22 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=46.5
Q ss_pred cceEEEecCCCCCCCCEeEEecCCCceeccCCCcC-CCCceeccccc-cccCCCCCHHHHHHH-HHHHhC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVD-HTGKIYSPYLH-TWTPQNSKLEGLIKT-LASAFS 77 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd-~~G~~~~pyL~-~W~~~~s~L~~li~~-l~~~F~ 77 (434)
+-+.|.+|++||+.||.|...-. .-+++|| .+|+|++..|. +|++ ..++..++.. +...|.
T Consensus 48 f~~~i~fp~~YP~~pP~v~f~t~-----i~HPni~~~~G~iCl~il~~~W~p-~~~i~~vl~~ii~~Ll~ 111 (152)
T 2onu_A 48 WKVHVTLPDDYPFASPSIGFMNK-----LLHPNVDEASGSVCLDVINQTWTP-LYSLVNVFEVFLPQLLT 111 (152)
T ss_dssp EEEEEECCTTTTTSCCEEEESSC-----CCCTTBCTTTCBBCHHHHHHHCCT-TCCHHHHHHTHHHHHHH
T ss_pred EEEEEcCcccCCCCCCeEEEecC-----CccCcCcCcCCeEecccccccCCC-CCCHHHHHHHHHHHHHh
Confidence 45788999999999999966421 2357899 49999999996 4987 6788887765 445554
No 61
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=95.04 E-value=0.089 Score=47.28 Aligned_cols=74 Identities=9% Similarity=0.033 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 280 AVEDKIRRKMNEQKVQAQ-EEIEILKQTENEL----NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 280 al~dkL~~~L~e~~~q~~-~ele~L~~~q~EL----~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.+.++|+.-+++...+.. ..++.+...|++| ++.++.|+.+..+|+.++..|+++.+.|+++++.+++++.++.
T Consensus 12 ~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 12 EMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666555443 5566777666655 8888889999999999999999999999999999999665553
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.61 E-value=0.42 Score=47.60 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q psy18020 284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEA 363 (434)
Q Consensus 284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~ 363 (434)
+|+..|.+..+.......-+..+.+.|+..+...++.-....+..+.|++.|..|+++++.--..|..
T Consensus 71 ~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~------------ 138 (390)
T 1deq_A 71 KLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINL------------ 138 (390)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------
Confidence 44444433333333333334444444444444444444444444445555554444444333223332
Q ss_pred ccccchHHHHHHHhhHHHHhhhhHHHHHHH----HHhc---CCCCHHHHHHHHHHH
Q psy18020 364 VTTTAPIYKQILNTFTEEAATEDTIYYMGE----ALRR---GVIDLEVYLKQVRSL 412 (434)
Q Consensus 364 i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~----aL~~---g~I~ld~flK~vR~L 412 (434)
|-+-|-+++.|..-||-.|.+.-+ +.++ =+||++.|.++-.+|
T Consensus 139 ------Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL 188 (390)
T 1deq_A 139 ------LQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQL 188 (390)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHH
Confidence 333334444444455544433222 1221 157888888776653
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.31 E-value=0.45 Score=37.26 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
|....++++..++.|+.....|+++....++.|..
T Consensus 39 L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 39 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555444444444443
No 64
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=93.76 E-value=0.02 Score=61.94 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..+-+++++++....+. +..++.||...+++ +..+....+.....|.+.++++.++++.|.++++
T Consensus 383 ~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~i~~l~~~p~~~DA~~l~~A~kg~gTde~~LiEIL~ 462 (672)
T 1m9i_A 383 DTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILA 462 (672)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCTHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHhccCCCHHHHHHhhh
Confidence 577788888889999988888876 56788899887776 5666677899999999999999999999999999
Q ss_pred HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
...+.+...|.+ +|+++|....|+.-..||...+.++|
T Consensus 463 tRsn~ei~~ik~-------aY~~~y~~sLe~di~~dtsG~~~~ll 500 (672)
T 1m9i_A 463 TRTNAEIRAINE-------AYKEDYHKSLEDALSSDTSGHFRRIL 500 (672)
T ss_dssp HSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred cCCHHHHHHHHH-------HHHHHHCcCHHHHHHhccchHHHHHH
Confidence 987777666666 77888888888888888877777765
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.27 E-value=0.92 Score=46.94 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 283 DKIRRKMNEQKVQAQEEIEI-LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~-L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++|++.+.+. +++..++++ ++.+.++|+.......+......+..++|++.|+.|+++++.-...|..|
T Consensus 67 NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 67 NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555444 344444444 34445555555554555555555555666666666666666655555544
No 66
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=92.49 E-value=0.097 Score=46.71 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=42.8
Q ss_pred ccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceecccccc--ccC--CCCCHHHHH
Q psy18020 8 VYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHT--WTP--QNSKLEGLI 69 (434)
Q Consensus 8 ~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~--W~~--~~s~L~~li 69 (434)
.|.+.+.|=+|++||++||-|.. ++.+ .....|+.+|+|+|-.|.. |.. +..++..++
T Consensus 82 ~y~F~L~~~fPe~YP~~PPeV~F-~~~~---~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 82 KYEFDIEFDIPITYPTTAPEIAV-PELD---GKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp EEEEEEEEECCTTTTTSCCCCBC-GGGT---TTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred ceEEEEEEECCCCCCCCCCeeee-CCCC---CCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 58899999999999999999866 3321 2246789999999999933 652 356655554
No 67
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=91.99 E-value=0.031 Score=60.48 Aligned_cols=110 Identities=22% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..+-+++++++....+. +..++.||...+++ +..+....+.....|.+.+++++++++.|.++++
T Consensus 40 ~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~l~~l~~~p~~~dA~~l~~A~kG~gTde~~LiEIl~ 119 (672)
T 1m9i_A 40 EAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYCDAKEIKDAISGIGTDEKCLIEILA 119 (672)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 567778888888899888888876 56788888887777 4556677888999999999999999999999999
Q ss_pred HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
..++.+...|.+ +|+++|....|+.-..||...+.++|
T Consensus 120 tRsn~ei~~ik~-------aY~~~y~~sLe~di~~dtsG~f~klL 157 (672)
T 1m9i_A 120 SRTNEQMHQLVA-------AYKDAYERDLEADIIGDTSGHFQKML 157 (672)
T ss_dssp HCCHHHHHHHHH-------HHHHHSCSCHHHHHHHHCCHHHHHHH
T ss_pred cCCHHHHHHHHH-------HHHHHhCcchHHHHhccCCccHHHHH
Confidence 877655544444 45555555555555555544444443
No 68
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=91.64 E-value=0.061 Score=52.71 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|-+++++.+....+. +..++.||...+++ +.-+....+.....|.+.+++++++++.|.++++
T Consensus 23 ~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA~~L~~AmkG~Gtde~~LieIL~ 102 (308)
T 2hyv_A 23 VTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIIC 102 (308)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHTSTTCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCHHHHHHHHh
Confidence 456677777778888888887776 45678888766666 3455567788889999999999989999999998
Q ss_pred HhcCC
Q psy18020 351 VLTEK 355 (434)
Q Consensus 351 ~l~~k 355 (434)
...+.
T Consensus 103 ~Rs~~ 107 (308)
T 2hyv_A 103 SRTNQ 107 (308)
T ss_dssp HCCHH
T ss_pred cCCHH
Confidence 77644
No 69
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.45 E-value=3.7 Score=32.04 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKET 343 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~ 343 (434)
+.+..+|.+...++..+.+.|+++...|+.++...+..+..|-.+++
T Consensus 33 KekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 33 KEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344445555556666666888888888888888887777766543
No 70
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=91.38 E-value=0.06 Score=53.11 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|-+++++.+....+. ...++.||...++++ ..+....+.....|.+.++++++++..|.++++
T Consensus 39 ~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~p~~~DA~~L~~A~kG~Gtde~~lieIL~ 118 (323)
T 1axn_A 39 KMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILT 118 (323)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHCSSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCccHHHHHHHHhcCchHHHHHHHHHHhccCCCCHHHHhHHhc
Confidence 466778888888888888888776 456778887666652 333445677888999999999889999999998
Q ss_pred HhcCC
Q psy18020 351 VLTEK 355 (434)
Q Consensus 351 ~l~~k 355 (434)
...+.
T Consensus 119 ~Rs~~ 123 (323)
T 1axn_A 119 TRTSR 123 (323)
T ss_dssp HSCHH
T ss_pred CCCHH
Confidence 77543
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.17 E-value=2.9 Score=34.68 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
+.+.+.+.......|++++..|+..+..+...|..|+.+.+.|++.-.
T Consensus 26 ~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 26 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 556666667777778999999999999999999999999998887655
No 72
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=90.91 E-value=0.055 Score=53.95 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|-+++++.+....+. +..++.||...+++ +..+....+.....|.+.+++++++++.|.++++
T Consensus 63 ~~iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~DA~~L~~AmkG~GTde~~LieIL~ 142 (346)
T 1hm6_A 63 ATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEILA 142 (346)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHHHHHHHHHhhccCCCHHHHHHHHh
Confidence 566778888888888888888776 45678888776666 4555677788899999999999999999999998
Q ss_pred HhcCCCC------------CCcccccccc-chHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcCC-CCHHHH
Q psy18020 351 VLTEKTE------------VDVDEAVTTT-APIYKQILNTFTE-----------EAATEDTIYYMGEALRRGV-IDLEVY 405 (434)
Q Consensus 351 ~l~~k~~------------~diDe~i~~~-~~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g~-I~ld~f 405 (434)
...+.+- -|+.+.|..+ +--++.++-..+. +.|-.|+-. |.+|...|. -|-++|
T Consensus 143 ~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~~~R~e~~~vd~~~a~~DA~~-L~~A~~~~~Gtde~~l 221 (346)
T 1hm6_A 143 SRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDARA-LYEAGERRKGTDLNVF 221 (346)
T ss_dssp HSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSCCHHHHHHHHHH-HHHHTTTSSSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhhccccccCCCCchHHHHHHHH-HHHHHhccCCCcHHHH
Confidence 7754322 1333333222 2235555555555 667777765 667775432 244545
Q ss_pred HH
Q psy18020 406 LK 407 (434)
Q Consensus 406 lK 407 (434)
+.
T Consensus 222 i~ 223 (346)
T 1hm6_A 222 IT 223 (346)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 73
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=90.87 E-value=0.072 Score=52.50 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|-+++++.+....+. ...++.||...++++ ..+....+.....|.+.+++++++++.+.++++
T Consensus 38 ~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG~fe~~l~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~ 117 (322)
T 2zhj_A 38 DAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILA 117 (322)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCccHHHHHHHHcCCcHHHHHHHHHHhhhccCCCHHHHHHHHh
Confidence 567778888888888888888776 456777777666652 333456677888888888888888888888888
Q ss_pred HhcCCCCC------------Cccccccccc-hHHHHHHHhhHH-----------HHhhhhHHHHHHHHHhcCC-CCHHHH
Q psy18020 351 VLTEKTEV------------DVDEAVTTTA-PIYKQILNTFTE-----------EAATEDTIYYMGEALRRGV-IDLEVY 405 (434)
Q Consensus 351 ~l~~k~~~------------diDe~i~~~~-~l~~Ql~~l~Ae-----------d~AieDtiy~L~~aL~~g~-I~ld~f 405 (434)
...+.+-- ++.+.|..+. --++.++-.... +.|-.|+-- |.+|...|. -+-++|
T Consensus 118 ~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~ll~~~r~e~~~vd~~~a~~dA~~-L~~A~~~~~Gtde~~l 196 (322)
T 2zhj_A 118 SRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQD-LYEAGEKRWGTDEVKF 196 (322)
T ss_dssp HSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHCCCCCSCCCCHHHHHHHHHH-HHHHTTTSSSCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCccHHHHHHhhcCchHHHHHHHHHhhccccccccCCCHHHHHHHH-HHHhhhcCCCCchHHH
Confidence 76543222 4444332221 124444444444 666666654 556664432 255555
Q ss_pred HHH
Q psy18020 406 LKQ 408 (434)
Q Consensus 406 lK~ 408 (434)
++-
T Consensus 197 i~I 199 (322)
T 2zhj_A 197 LSI 199 (322)
T ss_dssp HHH
T ss_pred hHh
Confidence 543
No 74
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=90.49 E-value=0.12 Score=50.92 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|.+++++.+.+..+. ...++.||...++++ .-+....+.....|.+.+++++++++.+.++++
T Consensus 35 ~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~ 114 (320)
T 1yii_A 35 ETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILA 114 (320)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHHHHHHHHhccCCCchHHHhHHHh
Confidence 567788888889998888888776 346777776666552 333345577788888888888778888888888
Q ss_pred HhcCC
Q psy18020 351 VLTEK 355 (434)
Q Consensus 351 ~l~~k 355 (434)
...+.
T Consensus 115 ~Rs~~ 119 (320)
T 1yii_A 115 SRTPA 119 (320)
T ss_dssp HSCHH
T ss_pred cCCHH
Confidence 76543
No 75
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=90.33 E-value=0.1 Score=51.09 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=85.7
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy18020 271 EHIKMSLK----SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENEL-NQGKFK--LARMFERIDKEKAELERSISF 337 (434)
Q Consensus 271 e~~r~sl~----sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL-~~~~~~--L~~~~~eLe~~k~~Le~~i~~ 337 (434)
+.++++++ .+|.+.|..+-+++++.+....+. ...++.|| ...+++ +..+....+.....|.+.+++
T Consensus 11 ~~L~kA~kG~de~~lI~IL~~rs~~qr~~I~~~Y~~~yg~dL~~~lksel~sG~fe~~l~~l~~~p~~~DA~~L~~A~kg 90 (310)
T 2ii2_A 11 PEVKAILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKN 90 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCSSHHHHHHHHHHSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHCccHHHHHHHhcCCCCHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 44555665 567778888888888888888776 45677777 655555 344556678888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC------------Cccccccccch---HHHHHHHhhHH------HHhhhhHHHHHHHHHh
Q psy18020 338 LKEKETELDEILAVLTEKTEV------------DVDEAVTTTAP---IYKQILNTFTE------EAATEDTIYYMGEALR 396 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~~k~~~------------diDe~i~~~~~---l~~Ql~~l~Ae------d~AieDtiy~L~~aL~ 396 (434)
. ++++.|.++++...+.+-. ++.+.|..++. -+++++-.+.+ +.|-.|+-. |.+|..
T Consensus 91 ~-tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~ll~~~R~e~~~a~~DA~~-L~~A~~ 168 (310)
T 2ii2_A 91 V-NDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEV-LKHNLI 168 (310)
T ss_dssp S-CCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHHHHCCCCCCSCHHHHHHH-HHHHHT
T ss_pred C-CcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHHHhccCCcchHHHHHHHH-HHHHhh
Confidence 8 8888888888876543222 44444433322 34555555554 445566653 556664
Q ss_pred cC-CCCHHHHHHH
Q psy18020 397 RG-VIDLEVYLKQ 408 (434)
Q Consensus 397 ~g-~I~ld~flK~ 408 (434)
.+ --|-+.|++-
T Consensus 169 ~~~Gtde~~~i~I 181 (310)
T 2ii2_A 169 DADEPDHEAVVRL 181 (310)
T ss_dssp TSSSCCHHHHHHH
T ss_pred cccCCCHHHHHHH
Confidence 31 2244445543
No 76
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=89.77 E-value=6 Score=40.34 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy18020 281 VEDKIRRKMNEQKVQ---AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357 (434)
Q Consensus 281 l~dkL~~~L~e~~~q---~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~ 357 (434)
-.++|+.|+.+.+.. .+..+.+++..-+.+.......++.+..+++++..++..+..++.++++-++...+.+
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~---- 425 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELK---- 425 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHH----
Confidence 346788888655443 3444555555555555555667777788888999998888888888777766555432
Q ss_pred CCccccccccchHHHHH-------HHhhHHHHh----------hhhHHHHHHHHHh
Q psy18020 358 VDVDEAVTTTAPIYKQI-------LNTFTEEAA----------TEDTIYYMGEALR 396 (434)
Q Consensus 358 ~diDe~i~~~~~l~~Ql-------~~l~Aed~A----------ieDtiy~L~~aL~ 396 (434)
.+.+++.-++-+|+-+ |..+|+|.| .+|++-.|++-.+
T Consensus 426 -aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe~fKGKKIRSvDDALaSfEKyk~ 480 (602)
T 1cii_A 426 -ATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRA 480 (602)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHTTTTCBCCCHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHhc
Confidence 1334443333343333 233344444 6788887776543
No 77
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=89.74 E-value=0.1 Score=51.62 Aligned_cols=110 Identities=25% Similarity=0.275 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
..|.+.|..|.+++++.+.+..+. ...++.||...++++ ..+....+.....|.+.++++.++++.+.++++
T Consensus 42 ~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA~~L~~A~~g~Gtde~~lieIL~ 121 (327)
T 1w3w_A 42 QAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILA 121 (327)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 567788888888888888877766 345667776666552 222233377788888888888888888888888
Q ss_pred HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
...+.+-..|-+ .|+++|...-|+.-..|+-..+.++|
T Consensus 122 tRs~~ql~~i~~-------~Y~~~yg~sLe~dI~~e~sG~~~~~L 159 (327)
T 1w3w_A 122 SRTKNQLREIMK-------AYEEDYGSSLEEDIQADTSGYLERIL 159 (327)
T ss_dssp HSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred hCCHHHHHHHHH-------HHHHHhCccHHHHHhhccCchHHHHH
Confidence 765443333333 55555555555555555555555544
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.72 E-value=1.6 Score=45.70 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
++.+++.+...++..+...++....+++.+++.........|+.....+.+-+.+-.+-.+++.+++-...+.++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 333333333333333333333333333333333323333444443333444444444444444444444444433
No 79
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=88.56 E-value=4.9 Score=31.22 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 301 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
+.|.+.++++... +..+.+-+.....|...+..|++++.+
T Consensus 31 EELs~vr~~ni~~----eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNF----ASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444442 233334444445555555555555555
No 80
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=88.44 E-value=0.18 Score=49.54 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEIL------KQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~L------~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|.+++++.+.+..+.+ ..++.|+...++++ ..+....+.....|.+.+++..++++.+.++++
T Consensus 33 ~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~L~~A~kg~Gtde~~lieIL~ 112 (315)
T 1dm5_A 33 KSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILC 112 (315)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHHHSSSCCHHHHHHHHS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHHHHHHHHhhcCCCchhhhhhhHh
Confidence 5677888888888888888877763 45666776655552 223334566667777777777667777777776
Q ss_pred Hhc
Q psy18020 351 VLT 353 (434)
Q Consensus 351 ~l~ 353 (434)
...
T Consensus 113 tRs 115 (315)
T 1dm5_A 113 TQS 115 (315)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 81
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.32 E-value=3.7 Score=37.16 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
..|++++..|+..+..+...|..|+...+.+++.
T Consensus 91 ~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 91 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344444444444444444444444444444443
No 82
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=87.81 E-value=0.22 Score=48.27 Aligned_cols=75 Identities=8% Similarity=0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENEL-NQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL-~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.+|.+.|..|-+++++.+....+. ...++.|| ...++++ .-+....+.....|.+.+++. ++++.+.+++
T Consensus 21 ~~li~IL~~rs~~qr~~I~~~Y~~~yg~~L~~~lk~el~sG~f~~~l~~l~~~~~~~dA~~L~~A~kg~-tde~~lieIL 99 (295)
T 4evf_A 21 VQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVRAQHIRDALSGR-NDHMAFFDTV 99 (295)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSHHHHHHHHHTSCHHHHHHHHHHHHHHSS-CCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCcCHHHHHHhhccCCCHHHHHHHHccCchHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 567778888888888888887776 34677777 4555553 233355677888888888887 7777777777
Q ss_pred HHhcC
Q psy18020 350 AVLTE 354 (434)
Q Consensus 350 ~~l~~ 354 (434)
+..++
T Consensus 100 ~~Rs~ 104 (295)
T 4evf_A 100 ILCTP 104 (295)
T ss_dssp TSCCH
T ss_pred HcCCH
Confidence 75543
No 83
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.10 E-value=13 Score=32.37 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETEL-DEILAVL 352 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL-e~~I~~l 352 (434)
+.|.+++..|+-.-..++..+..|+++.++| ++|+...
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588888888888888888888888877665 7777654
No 84
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=86.88 E-value=9.6 Score=30.11 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
+..++.-.-.+.+|...+..|+..+..|+.+...-++.|..|+.++++.-+.|+
T Consensus 10 e~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 10 ENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444455566666666667777777777777777777777766666544443
No 85
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=86.84 E-value=18 Score=33.24 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=19.4
Q ss_pred HhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020 376 NTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 376 ~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe 415 (434)
+|+|=..+||=+ ||=..|+ .|.+--..||+||.+
T Consensus 94 nlLALNAaIEAA-----raGe~Gr-GFaVVA~Evr~La~~ 127 (213)
T 3g67_A 94 NILALNATIEAA-----RAGEAGK-GFMIVANEVQNLSNE 127 (213)
T ss_dssp HHHHHHHHHHHH-----HHCGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH-----hhccccc-chHHHHHHHHHHHHH
Confidence 445555555433 3333342 577777888888764
No 86
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.75 E-value=8.9 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQ 312 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~ 312 (434)
++|+.+++..+......++...+.+..+..
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~ 34 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKA 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444544444444444
No 87
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=86.56 E-value=0.13 Score=50.63 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKL--ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L--~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+|.+.|..|-+++++.+.+..+. ...++.||...++++ ..+....+.....|.+.+++.+++++.+.++++
T Consensus 37 ~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~l~~A~kg~Gtde~~lieIL~ 116 (321)
T 1n00_A 37 GLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDALLANEATKRWTSSNQVLMEIAC 116 (321)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHHHHHHHHHSSSCSSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChhHHHHHHHHHHhhccCCCHHHHHHHHh
Confidence 567778888888888888777766 346677776666552 333344556666677776666666667777776
Q ss_pred HhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 351 VLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 351 ~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
..++.+-..|-+ .|+++|...-|+.-..|+-..+.++|
T Consensus 117 tRs~~ql~~i~~-------~Y~~~~g~~Le~dI~~e~sG~~~~~L 154 (321)
T 1n00_A 117 TRSANQLLHARQ-------AYHARYKKSLEEDVAHHTTGDFHKLL 154 (321)
T ss_dssp SSCHHHHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred cCCHHHHHHHHH-------HHHHHhCccHHHHHHhccCcHHHHHH
Confidence 654333323333 45566655555555555555555544
No 88
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.29 E-value=5.7 Score=30.87 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+..+|++...+++.--++++.++..|+..+.+-++...+|+.....|+.-|..|.+-.+.|.+.+.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 3444554444444444456777777777777777776667666666666666666655555555443
No 89
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.93 E-value=2.4 Score=48.30 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCccccC
Q psy18020 62 NSKLEGLIKTLASAFSALPPLYSSR 86 (434)
Q Consensus 62 ~s~L~~li~~l~~~F~~~pPl~~~~ 86 (434)
+++=..|++-|...|-...|.|.++
T Consensus 517 ~~tD~~f~~kl~~~~~~~~~~f~~p 541 (1080)
T 2dfs_A 517 KGSDDTWAQKLYNTHLNKCALFEKP 541 (1080)
T ss_dssp TCCHHHHHHHHHHHHBTTBSSEECC
T ss_pred CCChHHHHHHHHHHhhcCCCCccCC
Confidence 4455567777777773344555554
No 90
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.90 E-value=9.8 Score=28.99 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 286 ~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
..+|++....++.--++++.++..|+..+.+-++...+|+.....|+.-|..|.+-.+.|
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444333333434456667777776666665555555555555555555554433333
No 91
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.83 E-value=9.8 Score=28.86 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 281 VEDKIRRKMNEQKVQAQEEIEILKQTE-NELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 281 l~dkL~~~L~e~~~q~~~ele~L~~~q-~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
+..-++..-.+...++++++|...+.+ ++|...-.+-.+.+...+.+-.+|...|+.|+.+++.
T Consensus 10 il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 10 AMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666666677777765544 2333333333333333444444455555555554443
No 92
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=85.33 E-value=8.3 Score=31.50 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
+....|..+-++.|.+.-.++.-..|-++.+..|.-+.+-.+......|.+.+..|+..-..+.++.+++.+.+
T Consensus 56 SFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklm 129 (142)
T 1pl5_A 56 SFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLM 129 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44455666667777777777777788899999999999999999999999999999888777776666654433
No 93
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.14 E-value=4 Score=46.92 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCccccC
Q psy18020 62 NSKLEGLIKTLASAFSALPPLYSSR 86 (434)
Q Consensus 62 ~s~L~~li~~l~~~F~~~pPl~~~~ 86 (434)
+.+=..|++-|...|+. .|.|.++
T Consensus 548 ~~td~~~~~kl~~~~~~-~~~~~~~ 571 (1184)
T 1i84_S 548 KATDTSFVEKLIQEQGN-HAKFQKS 571 (1184)
T ss_dssp TCCHHHHHHHHHHHTSS-CTTEEEC
T ss_pred CCChHHHHHHHHHHhCC-CCCccCC
Confidence 45556677888888854 4566654
No 94
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.61 E-value=12 Score=28.76 Aligned_cols=49 Identities=27% Similarity=0.267 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
+|..++..|+--+..|-.-+.+|..++..|+..+..+.+....++.-+.
T Consensus 20 eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 20 QLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444444444444555444444444444444444443
No 95
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=84.60 E-value=0.36 Score=42.28 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.8
Q ss_pred cCcccccceEEEecCCCCCCCCEeEEecCCCceeccCCCcCCCCceeccccccccC
Q psy18020 5 SGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTP 60 (434)
Q Consensus 5 ~g~~y~iPi~iwl~~~yP~~~P~~~v~pt~~m~i~~~~~vd~~G~~~~pyL~~W~~ 60 (434)
.-.+|-+-+.|=+|.+||+.||.|-. |+.++ ....|+.+|+|+|..+ |.+
T Consensus 81 ~~~kyeFkLefdiP~tYP~tPPeI~F-p~ldg---kt~kmYr~GkICLdIh--wkP 130 (168)
T 3kpa_A 81 KNEKYEFEMNFDIPVTYPQAPPEIAL-PELEG---KTVKMYRGGKICMTTH--FFP 130 (168)
T ss_dssp TTEEEEEEEEEECCTTTTTSCCCCBC-GGGTT---TCSSEETTTEECCCTT--HHH
T ss_pred ccceeEEEEEEeCCccCCCCCCEeec-ccccC---cCccccCCCcEEeccc--cch
Confidence 33478999999999999999999866 55322 3367789999998874 864
No 96
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=84.13 E-value=1.7 Score=35.07 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELE 332 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le 332 (434)
|+.++.+|+.+-..||
T Consensus 52 L~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 97
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.13 E-value=13 Score=28.73 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18020 285 IRRKMNEQKVQAQEEIEILKQTENELNQGK 314 (434)
Q Consensus 285 L~~~L~e~~~q~~~ele~L~~~q~EL~~~~ 314 (434)
|+.+++..........+.+...+..|....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554444444445555555555555533
No 98
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=84.10 E-value=9.7 Score=31.86 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
+....|..+-++.|.+.-.++.-..|-++.+..|.-+.+-.|......|.+.+..|+..-..+.++.+++.+.+
T Consensus 80 SFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklm 153 (166)
T 1nyh_A 80 SFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLM 153 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44556666777777777777777788899999999999999999999999999999988777776666655433
No 99
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=83.85 E-value=28 Score=34.90 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHh-hHHHHhhhhHHHHHHHHHh---cC-
Q psy18020 324 IDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNT-FTEEAATEDTIYYMGEALR---RG- 398 (434)
Q Consensus 324 Le~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l-~Aed~AieDtiy~L~~aL~---~g- 398 (434)
+...+.+|...+..+......+.+....+++.++.|...+-.+.+++-.-++++ ++. .+.|=|.-|.+++. .|
T Consensus 421 fsgIrkELsdKleN~NnNlndf~~sfneLKNgKn~dfSKV~qt~s~le~Sikd~iInq--kV~aKIDNLNQaaSefKnGK 498 (569)
T 4dvz_A 421 LKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINP--EWISKVENLNAALNEFKNGK 498 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHTC-
T ss_pred hHHhHHHHHHHHhhhhccchhhcccchhhccCCCchHHHHhhhccccccChhhhhhhH--HHHHhHHHHHHHHHHhcCCC
Confidence 333344444444444444445555556777777777777666667766667776 444 56677777777775 33
Q ss_pred CCCHHH-------HHHHHHHHHHHHHHH
Q psy18020 399 VIDLEV-------YLKQVRSLSRKQFMF 419 (434)
Q Consensus 399 ~I~ld~-------flK~vR~LaReQF~~ 419 (434)
..||.. .=+..-.|+|+|=+.
T Consensus 499 ngDFSkVgQAlsdLKnSkvgLsrnQELt 526 (569)
T 4dvz_A 499 NKDFSKVTQAKSDLENSVKDVIINQKVT 526 (569)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhhhHHHhhhhhhhhhHHHH
Confidence 234432 122566788988443
No 100
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.66 E-value=15 Score=29.52 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQ 312 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~ 312 (434)
+.|+.+++..+......++...+.+.++..
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~ 34 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQ 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444444544444444444
No 101
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.37 E-value=8.4 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.8
Q ss_pred CCccccccccchHHHHHHHhh
Q psy18020 358 VDVDEAVTTTAPIYKQILNTF 378 (434)
Q Consensus 358 ~diDe~i~~~~~l~~Ql~~l~ 378 (434)
+|||-++.+...-.+.-++.-
T Consensus 155 ~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 155 VDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred HHHHHHhcccccccchhhhhh
Confidence 455555555555555444443
No 102
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.33 E-value=9 Score=34.64 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=11.0
Q ss_pred HhhhhHHHHHHHHHhcCCC
Q psy18020 382 AATEDTIYYMGEALRRGVI 400 (434)
Q Consensus 382 ~AieDtiy~L~~aL~~g~I 400 (434)
..++|.=.-|++|+.++.+
T Consensus 130 ~SleD~e~kln~aiEr~al 148 (189)
T 2v71_A 130 MSLEDFEQRLNQAIERNAF 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455555566666666543
No 103
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.89 E-value=11 Score=32.20 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy18020 337 FLKEKETEL 345 (434)
Q Consensus 337 ~L~~~~~eL 345 (434)
.|+.++.+|
T Consensus 121 ~l~~~~~~l 129 (138)
T 3hnw_A 121 KYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 104
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=82.75 E-value=8 Score=36.13 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
..|+..++.|+..+..+.+.+..|++++.+|+..|..+++
T Consensus 180 ~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~ 219 (242)
T 3uux_B 180 RDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD 219 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3488888888888888888888888888888887766653
No 105
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.87 E-value=17 Score=28.58 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++..++.......+|.....+|..+...|.......+..+.+|.....+|+..|..+
T Consensus 26 lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 26 MKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555566666666666666655554
No 106
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.31 E-value=35 Score=31.82 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----Ccccccccc
Q psy18020 293 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV-----DVDEAVTTT 367 (434)
Q Consensus 293 ~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~-----diDe~i~~~ 367 (434)
+..+..+++.+....+.|...-.+++..+..++.....++..+..+..+++..++-+...++..+. +|+.+-.-.
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666677777888888888888888888888877777777654432221 233322223
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 368 APIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 368 ~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
.-+-+.++++..+-.+++..+..+...
T Consensus 107 ~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 107 NQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444444444333
No 107
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.13 E-value=5.2 Score=41.46 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHH
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQ 373 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Q 373 (434)
+.++++++.+.+...+-.. -.+.+++.|+........+-..+.+-.++|++-|..|+ ..||+-|.--.+|-+.
T Consensus 67 NELKnqLEdlsKnsKdseq---y~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK----ekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHS---LTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK----RKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHH---HHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3334445554444433333 23444444444444444444444444445555555552 2444444444556666
Q ss_pred HHHhhHHHHhhhhHHHHHHHHHhc-------CCCCHHHHHHHHHHH
Q psy18020 374 ILNTFTEEAATEDTIYYMGEALRR-------GVIDLEVYLKQVRSL 412 (434)
Q Consensus 374 l~~l~Aed~AieDtiy~L~~aL~~-------g~I~ld~flK~vR~L 412 (434)
|=+++.|..-||=.|..=-|.=+- -.||++.|.-+=++|
T Consensus 140 Ledq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 667777777777666654444331 267888887766655
No 108
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=81.01 E-value=3.2 Score=28.49 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+-+++.+|..-.+.||++|..|+.+.+.|.+.++.+
T Consensus 7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677788888888889999998888888877643
No 109
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=81.00 E-value=13 Score=37.81 Aligned_cols=92 Identities=23% Similarity=0.168 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA 382 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~ 382 (434)
...+.+.|+..+...++--....+..+.|++.+..|+++++.--..|.. |-+.|-+++.|..
T Consensus 88 ~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Irv------------------Lq~~l~~q~skIQ 149 (491)
T 1m1j_A 88 IVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKA------------------LQNSIQEQVVEMK 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Confidence 4445555555555555555555556666666666665555544444443 3344445555555
Q ss_pred hhhhHHHHHHHHHh----c---CCCCHHHHHHHHHHH
Q psy18020 383 ATEDTIYYMGEALR----R---GVIDLEVYLKQVRSL 412 (434)
Q Consensus 383 AieDtiy~L~~aL~----~---g~I~ld~flK~vR~L 412 (434)
-||-.|..=-+.-+ | -+||++.|.-+=+.|
T Consensus 150 RLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqL 186 (491)
T 1m1j_A 150 RLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHL 186 (491)
T ss_dssp HHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHH
Confidence 55555553222211 1 167777775554433
No 110
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.66 E-value=21 Score=28.94 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
....=+++.|+..-.|++.....++++..+...+...++..+..|+.+.+.+..-|...
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555777777777777777777888888888887777643
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.07 E-value=35 Score=43.28 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFL 338 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L 338 (434)
|...+.+|+....+.+.++.++..++++.++.-...
T Consensus 1943 L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544445555555555544444433333
No 112
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=79.76 E-value=1.6 Score=42.68 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=2.5
Q ss_pred HHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 372 KQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 372 ~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
+..|+.+--+-.|++ +.-|-+-||+. =+|-.|||.||+.=
T Consensus 270 ~~~Y~v~~c~P~l~~-~~~l~~~lN~~-~d~~~Fl~~~R~~F 309 (315)
T 2ve7_A 270 ARDYEVSDSAPHLEG-LAEFQENVRKT-NNFSAFLANVRKAF 309 (315)
T ss_dssp --------------------------------------CHHH
T ss_pred CCceEEEecCCCCcc-HHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence 577888888888887 44444445443 47999999999653
No 113
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=79.51 E-value=5.1 Score=33.09 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=42.9
Q ss_pred cchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 367 TAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 367 ~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
.++..+.+||..|+=.+|==|+.+|.||.-++.|+-+.|-..+.+|=
T Consensus 20 ~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL 66 (109)
T 2f6m_B 20 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 66 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999988776664
No 114
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=79.05 E-value=5.2 Score=33.48 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.3
Q ss_pred cchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 367 TAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 367 ~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
.+...+.+||-.|+=.||==|+.+|.+|.-++.|+-+.|-..+.+|=
T Consensus 29 ~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL 75 (118)
T 2p22_B 29 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 75 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999988877664
No 115
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=78.97 E-value=17 Score=33.46 Aligned_cols=81 Identities=10% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHH
Q psy18020 295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQI 374 (434)
Q Consensus 295 q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql 374 (434)
++....+.+.++++|+..-+...++++.++ .+..+++-+..|-.-.+.|++.+... ...-+++.++.+-..+++||
T Consensus 74 e~~el~d~~lR~~AEfeN~RkR~~rE~e~~--~~~a~e~~~~~LLpVlDnlerAl~~~--~~~~~~~~l~eGvemi~k~l 149 (213)
T 4ani_A 74 KLSEMEHRYLRLYADFENFRRRTRQEMEAA--EKYRAQSLASDLLPVLDNFERALKIE--TDNEQAKSILQGMEMVYRSL 149 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHSCC--SCCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHH
Confidence 333344455666666666555555544443 23444555566666666666666422 22234444444444455555
Q ss_pred HHhhH
Q psy18020 375 LNTFT 379 (434)
Q Consensus 375 ~~l~A 379 (434)
.+.+.
T Consensus 150 ~~~L~ 154 (213)
T 4ani_A 150 VDALK 154 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 116
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.80 E-value=18 Score=41.22 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=2.2
Q ss_pred HHHHHh
Q psy18020 372 KQILNT 377 (434)
Q Consensus 372 ~Ql~~l 377 (434)
.|+-++
T Consensus 1037 qq~~~l 1042 (1080)
T 2dfs_A 1037 TEKEEL 1042 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 117
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=78.68 E-value=23 Score=29.46 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEA 363 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~ 363 (434)
-.|+....-|++-+.-|-....+|....++|+.+|......+.-+.+++
T Consensus 49 y~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~~~ee~ 97 (116)
T 3mxz_A 49 YDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDEKEGPEI 97 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccCCCChHHH
Confidence 4488888888888999999999999999999999997754444344443
No 118
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.63 E-value=29 Score=35.03 Aligned_cols=14 Identities=14% Similarity=0.467 Sum_probs=10.8
Q ss_pred eeecCcccccceEE
Q psy18020 2 TNLSGLVYHIPVCI 15 (434)
Q Consensus 2 v~~~g~~y~iPi~i 15 (434)
.+|.|+.|.||+.+
T Consensus 111 ~~~dGk~YglP~~~ 124 (471)
T 3mq9_A 111 VRYNGKLIAYPIAV 124 (471)
T ss_dssp GEETTEECEEEEEE
T ss_pred hEECCEEEEEeeec
Confidence 35788889888875
No 119
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=77.97 E-value=23 Score=32.04 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 289 MNEQKVQAQEEIEILKQTENELNQ 312 (434)
Q Consensus 289 L~e~~~q~~~ele~L~~~q~EL~~ 312 (434)
|.+.+.++++.+++++++..+...
T Consensus 88 Le~~r~~l~~~l~~~~~L~~~~~~ 111 (192)
T 2p22_C 88 LHEQKDKVQALLENARILESKYVA 111 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555533
No 120
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=77.92 E-value=2.5 Score=33.29 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=15.7
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++.++.++.
T Consensus 63 dG~I~f~EF~~~~~~~~~ 80 (96)
T 1a4p_A 63 DGKVGFQSFFSLIAGLTI 80 (96)
T ss_dssp SSCBCHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHH
Confidence 689999999999887765
No 121
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=77.23 E-value=12 Score=30.25 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 327 EKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.-.++...|..|+.+.-+++.||++++
T Consensus 63 ~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666666666666666653
No 122
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=77.13 E-value=23 Score=28.61 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHH
Q psy18020 327 EKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYL 406 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~fl 406 (434)
-..+|.+-...|+.+.+.|++.+.. .+. |- ++--.+-|.++.+|-.++.|-|..+-.--+.....+..|+
T Consensus 7 Ff~KLR~La~tLe~Eta~L~~al~~---eds-d~------E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FI 76 (101)
T 4aj5_1 7 FCGKLRSLASTLDCETARLQRALDG---EES-DF------EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFI 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CSS-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---ccc-cc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555566666666652 121 11 2346788899999999998877765444456678899999
Q ss_pred HHHHHHHHHH
Q psy18020 407 KQVRSLSRKQ 416 (434)
Q Consensus 407 K~vR~LaReQ 416 (434)
|.++.|..+-
T Consensus 77 Ka~kvL~~rn 86 (101)
T 4aj5_1 77 KATKVLMEKN 86 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 123
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.07 E-value=24 Score=31.21 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
.++..++||......++....+|+.....|+..-..|+.+...|
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444444444444444444443333
No 124
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=76.89 E-value=2.9 Score=33.14 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCCccccccccchHHHHH----HHh--hHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18020 338 LKEKETELDEILAVLT-EKTEVDVDEAVTTTAPIYKQI----LNT--FTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR 410 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~-~k~~~diDe~i~~~~~l~~Ql----~~l--~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR 410 (434)
|+++++++.++-...+ +.+.++.+|+... .+.+ +.. ...+..+++.|..++. =..|.|+++.|++.+.
T Consensus 5 l~~~~~~l~~~F~~fD~~~g~Is~~El~~~----l~~~~~~~lg~~~~~~~~ev~~l~~~~D~-d~dG~I~f~EF~~~~~ 79 (100)
T 1psr_A 5 AERSIIGMIDMFHKYTRRDDKIDKPSLLTM----MKENFPNFLSACDKKGTNYLADVFEKKDK-NEDKKIDFSEFLSLLG 79 (100)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCBCHHHHHHH----HHHHCHHHHHHHHHTTCCGGGTHHHHHCT-TCSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCeECHHHHHHH----HHHHhHhhhccccccCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHH
Confidence 4556666666666663 2344566553211 1110 111 1123344554443331 1368999999999988
Q ss_pred HHHH
Q psy18020 411 SLSR 414 (434)
Q Consensus 411 ~LaR 414 (434)
.+++
T Consensus 80 ~~~~ 83 (100)
T 1psr_A 80 DIAT 83 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 125
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.77 E-value=22 Score=35.92 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
..|+++...-++.|++|+.++.+++.-|+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 126
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=76.56 E-value=15 Score=30.35 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
|..++......+..+...+.+|...+..+...+.+|+.+++-|
T Consensus 61 L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 61 LEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3334444444445555556666666666655555555555444
No 127
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=76.03 E-value=6.6 Score=34.30 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=42.9
Q ss_pred cchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 367 TAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 367 ~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
.+...+.+||-+||=.+|==|+.+|.+|+-++.|+-+.|-..+.+|=
T Consensus 37 ~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL 83 (155)
T 2caz_B 37 ITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLL 83 (155)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999987776664
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.80 E-value=12 Score=28.46 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy18020 303 LKQTENEL 310 (434)
Q Consensus 303 L~~~q~EL 310 (434)
+.++|..|
T Consensus 21 i~eLq~~L 28 (72)
T 3nmd_A 21 LRDLQYAL 28 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.50 E-value=29 Score=27.69 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHH
Q psy18020 314 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGE 393 (434)
Q Consensus 314 ~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~ 393 (434)
+..+-.++.+|+.++..++..|..++.+...++.--... ..--+.+..|++++.-+-.+++--+.|-..
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~-----------w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~ 88 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQY-----------QREYSEFKRQQLELDDELKSVENQMRYAQM 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555666666666666666665555554422221 000123667777777777777766665544
Q ss_pred HH
Q psy18020 394 AL 395 (434)
Q Consensus 394 aL 395 (434)
-|
T Consensus 89 qL 90 (96)
T 3q8t_A 89 QL 90 (96)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 130
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=75.42 E-value=44 Score=32.74 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=36.9
Q ss_pred CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC
Q psy18020 354 EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398 (434)
Q Consensus 354 ~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g 398 (434)
..+..+.-|++.+..-+.+--.++..-...+..+...|.+++..+
T Consensus 392 ~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G~~ 436 (442)
T 1yc9_A 392 QGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGG 436 (442)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467778888888888888888888888888888888888887665
No 131
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=74.93 E-value=9.7 Score=28.34 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
|-....+.+..+++|++.+.-+....++|+.+|..++
T Consensus 17 L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E 53 (64)
T 3t97_C 17 LHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLE 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777888888888888888888888888774
No 132
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=74.39 E-value=4.7 Score=34.75 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHh
Q psy18020 318 ARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAA 383 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~A 383 (434)
...+..|+..++.|+..+..|+...+.++..++.++..+.++++ .+.+|+...+.|.-
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~--------~~~~Li~~~~~~~~ 136 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVA--------LFSSFLQTFIWEKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHH--------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH--------HHHHHHHHHHHccc
Confidence 34445566677788888888888888888888887665555444 46677777777653
No 133
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=74.17 E-value=21 Score=27.31 Aligned_cols=48 Identities=25% Similarity=0.228 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.|.-.+.+|-.+-+.|..+..-|+.+-..+.....+++.++.++++-+
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555543
No 134
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=73.71 E-value=18 Score=27.58 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
+.+++..|+.-+-++.+.+.+.+..+.+|+++|..|+.+...
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555667777888888888888888888776665
No 135
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.63 E-value=18 Score=36.75 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy18020 335 ISFLKEKETELDEIL 349 (434)
Q Consensus 335 i~~L~~~~~eLe~~I 349 (434)
++.|+++.+.+++.+
T Consensus 444 ~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 444 ETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh
Confidence 333333333333333
No 136
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=73.44 E-value=43 Score=33.31 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=36.7
Q ss_pred CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC
Q psy18020 354 EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398 (434)
Q Consensus 354 ~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g 398 (434)
..+..++-|++.+..-+.+.-.+++.-...+.-+..-|.+++..+
T Consensus 405 ~~G~~~~~dvl~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G~~ 449 (474)
T 3d5k_A 405 RTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 449 (474)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357788888888888888888888888888888888888888654
No 137
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=73.39 E-value=0.41 Score=47.39 Aligned_cols=74 Identities=12% Similarity=-0.016 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 280 AVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK--LARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 280 al~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~--L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
++.+.|..|-..+++.+..+.+. ...++.||....++ +.-+....+.....|.+.+++++++++.|.++|+.
T Consensus 31 ~ii~IL~~rs~~Qr~~i~~~Y~~~~g~dL~~~lk~e~sG~fe~~l~~l~~~p~~~dA~~L~~AmkG~GTde~~LieIl~t 110 (337)
T 3chj_A 31 DLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLKKHLSKDFESLVLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLT 110 (337)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHTTSCHHHHHHHHHHTSCHHHHHHHHHHHHHSSSSCCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHHhcCccHHHHHHHHhCChHHHHHHHHHHhccCCCCChHHhhhhhhc
Confidence 45566777777777777777665 34556666554444 22344566778888889998888888888888876
Q ss_pred hc
Q psy18020 352 LT 353 (434)
Q Consensus 352 l~ 353 (434)
..
T Consensus 111 Rs 112 (337)
T 3chj_A 111 IE 112 (337)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 138
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=73.30 E-value=21 Score=29.22 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
..+...++.|...+.++...-...+....+|+...+.+......++.+++.|++.....
T Consensus 22 ~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 22 DKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555544332212233445555566666666666666666666655543
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.24 E-value=30 Score=26.81 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy18020 298 EEIEILKQTENELNQGKFKLARMFERID 325 (434)
Q Consensus 298 ~ele~L~~~q~EL~~~~~~L~~~~~eLe 325 (434)
++|..=..++.||..-+........+|+
T Consensus 21 aEIqAKQ~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 21 EEVLTRQSLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444444444433
No 140
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=73.13 E-value=9.1 Score=36.90 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHH
Q psy18020 318 ARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYY 390 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~ 390 (434)
..|...|+.+ .+++.....+......|++-|+.|...+-.+--.+..-.+-+.-.|+.-.=+|=+|+|+-|+
T Consensus 69 ~~mq~~Le~E-re~~~~Rd~~a~~k~~Le~~ierLs~pgg~~dprL~~LAe~~GGvlLseiYDDI~ieDApyf 140 (302)
T 3ibp_A 69 EYLQQLLERE-REAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFGGVLLSEIYDDVSLEDAPYF 140 (302)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHSSSEEHHHHSTTCCTTTHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCEehhhhhcCCChhhHHHH
Confidence 3333445544 34444445556667777777777765332222222212222233334444568889999984
No 141
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=72.78 E-value=17 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 305 ~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
++++.|+.-+.++.+.+.+.+..+.+|+++|..|+.
T Consensus 9 ~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 9 QLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455666666777777777776666654
No 142
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=72.76 E-value=10 Score=30.56 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=3.1
Q ss_pred HHHHHhHHHHHH
Q psy18020 307 ENELNQGKFKLA 318 (434)
Q Consensus 307 q~EL~~~~~~L~ 318 (434)
|.||...+..|.
T Consensus 31 QqELs~tfarLc 42 (96)
T 1t3j_A 31 QQEMATTFARLC 42 (96)
T ss_dssp ----CCHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 143
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.72 E-value=17 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy18020 310 LNQGKFKLARMFERIDK 326 (434)
Q Consensus 310 L~~~~~~L~~~~~eLe~ 326 (434)
|+..++.|+..+..|+.
T Consensus 22 lerdeqnlekiianlrd 38 (52)
T 3he5_B 22 LERDEQNLEKIIANLRD 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHH
Confidence 33333334444444333
No 144
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=72.69 E-value=7.8 Score=29.25 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhc---CCC-CCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 338 LKEKETELDEILAVLT---EKT-EVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~---~k~-~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
|++..+++.++...++ +.+ .++.+|+...-...+..++.....+..+++.+..++. =+.|.|+++.|++-++.+.
T Consensus 4 l~~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~-d~dg~i~~~eF~~~~~~~~ 82 (93)
T 1k2h_A 4 LETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDE-NGDGEVDFQEFVVLVAALT 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHH-CTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHH
Confidence 3344455555555443 234 6777774321111001111111223334444443332 1468999999999888765
Q ss_pred H
Q psy18020 414 R 414 (434)
Q Consensus 414 R 414 (434)
.
T Consensus 83 ~ 83 (93)
T 1k2h_A 83 V 83 (93)
T ss_dssp H
T ss_pred H
Confidence 4
No 145
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.44 E-value=32 Score=27.77 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy18020 332 ERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 332 e~~i~~L~~~~~eLe~~I~~l 352 (434)
+..+..|+.+.+.|...+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 146
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=71.80 E-value=15 Score=25.37 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.+|+.++.+|+.....|++.|..|+.+++.|++-+
T Consensus 20 aklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 45777788888888888888888888777776643
No 147
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=71.41 E-value=12 Score=37.87 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
+.+-+|...+.++...++.|+.+..++.+.|..++..+ -|.++++.....+.+++=++-++-.++++.+..+-..
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG-KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC-SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666666666554333 2555666555666677777777777777766655444
No 148
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.69 E-value=38 Score=26.85 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=15.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 308 NELNQGKFKLARMFERIDKEKAELERSISFLKEK 341 (434)
Q Consensus 308 ~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~ 341 (434)
.+|+.....|..+++.|..+...+...+..++.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 149
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=70.50 E-value=55 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=34.1
Q ss_pred CCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC
Q psy18020 355 KTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398 (434)
Q Consensus 355 k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g 398 (434)
.+..++.|++.+..-+.+--.+++.-.....-+..-|.+++...
T Consensus 397 ~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G~~ 440 (446)
T 3pik_A 397 HGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISLYTALGGG 440 (446)
T ss_dssp TTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56778888888888888888888877777777777777776544
No 150
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.11 E-value=37 Score=34.39 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
...+.++++...+++++..+..+.+-+.++++-++++.+.++++..|+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 333444444444444444444444444444444444444444444443
No 151
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=70.02 E-value=2.4 Score=41.52 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHH-HHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEIL------KQTENELNQGKFKLARMF-------------ERIDKEKAELERSI-SFL 338 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~L------~~~q~EL~~~~~~L~~~~-------------~eLe~~k~~Le~~i-~~L 338 (434)
..|.+.|..|.++++..+.+..+.+ ..++.|+....+++=-.+ ...+.....|.+.+ .+.
T Consensus 111 ~~lieIL~~Rs~~q~~~I~~aY~~~y~~~Le~di~se~sG~~~~ll~~l~~~~R~e~~~vd~~~a~~DA~~L~~A~~~~~ 190 (323)
T 1axn_A 111 DALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRW 190 (323)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCSCCCSCCCHHHHHHHHHHHHHHTTTSS
T ss_pred HHHhHHhcCCCHHHHHHHHHHHHHhhCcCHHHHHHHhcCcHHHHHHHHHHhcccccCCCCCccHHHHHHHHHHHHhccCC
Confidence 4566777777777777777766652 345556655555422211 12445555566655 345
Q ss_pred HHHHHHHHHHHHHh
Q psy18020 339 KEKETELDEILAVL 352 (434)
Q Consensus 339 ~~~~~eLe~~I~~l 352 (434)
.++++.+.++++..
T Consensus 191 Gtde~~li~Il~tR 204 (323)
T 1axn_A 191 GTDEDKFTEILCLR 204 (323)
T ss_dssp SCCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhC
Confidence 55555566666654
No 152
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=70.00 E-value=26 Score=30.73 Aligned_cols=63 Identities=8% Similarity=0.157 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 290 ~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+..+..+...++.|..++..+.......+.+..+|+.....+......++.++..|++.+...
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555566666666654433333444556666666777777777777777777766544
No 153
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=69.79 E-value=51 Score=28.55 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
+.......+.+++++......|..+.+.++
T Consensus 75 i~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 75 VANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555543
No 154
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.75 E-value=16 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
|+....+|+.+...|+..|..|+.++..|...|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566666666666666666666666666554
No 155
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=69.67 E-value=83 Score=30.36 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=33.8
Q ss_pred CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020 354 EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR 396 (434)
Q Consensus 354 ~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~ 396 (434)
..+..+.-|++.+..-+.+--.++..-.....-+...|.+++.
T Consensus 363 ~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~G 405 (428)
T 1ek9_A 363 SVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG 405 (428)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567788888888888888888888888888888888887773
No 156
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=69.67 E-value=16 Score=29.25 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhc--CC--CCCCccccccccchHHHHHHHh-hH-------HHHhhhhHHHHHHHHHhcCCCCHHHH
Q psy18020 338 LKEKETELDEILAVLT--EK--TEVDVDEAVTTTAPIYKQILNT-FT-------EEAATEDTIYYMGEALRRGVIDLEVY 405 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~--~k--~~~diDe~i~~~~~l~~Ql~~l-~A-------ed~AieDtiy~L~~aL~~g~I~ld~f 405 (434)
|++.+++|.+.-.... +. +.++.+|+ ++++.. .- .+..+++.|..++.- ..|.|+++.|
T Consensus 8 le~~~~~l~~aF~~fD~~dgd~G~Is~~EL--------~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d-gDG~Idf~EF 78 (104)
T 3zwh_A 8 LEKALDVMVSTFHKYSGKEGDKFKLNKSEL--------KELLTRELPSWLGKRTDEAAFQKLMSNLDSN-RDNEVDFQEY 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTSBCHHHH--------HHHHHHHCGGGSCSSCCHHHHHHHHHHHCTT-CSSSBCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHH--------HHHHHHHcchhccCCCCHHHHHHHHHHHcCC-CCCCCcHHHH
Confidence 4445555555555553 22 46777773 233321 11 133444444443321 4789999999
Q ss_pred HHHHHHHHHHH
Q psy18020 406 LKQVRSLSRKQ 416 (434)
Q Consensus 406 lK~vR~LaReQ 416 (434)
++-++.++...
T Consensus 79 ~~~m~~~~~~~ 89 (104)
T 3zwh_A 79 CVFLSSIAMMS 89 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877644
No 157
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=69.51 E-value=16 Score=37.34 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 323 RIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
+|.++...|.+.+..|+++..++++.+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.73 E-value=29 Score=36.02 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKFKLAR-----------MFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~-----------~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++.+++.+++.|++.++++.+.-.+++. ..++|.++...|.+.+..|+++..++++.+..+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555544332221 334566666666777777776666666655443
No 159
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=67.88 E-value=42 Score=26.25 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy18020 301 EILKQTE 307 (434)
Q Consensus 301 e~L~~~q 307 (434)
++|..++
T Consensus 40 EqL~~LK 46 (84)
T 1gmj_A 40 EQLAALK 46 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 160
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=67.60 E-value=39 Score=27.42 Aligned_cols=19 Identities=42% Similarity=0.399 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy18020 334 SISFLKEKETELDEILAVL 352 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l 352 (434)
.+..|++++++|++-|++.
T Consensus 83 ~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555543
No 161
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=67.46 E-value=1.2e+02 Score=31.57 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA 382 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~ 382 (434)
++++-.+-...+.+.......|+..+.+|-.-++.+......+.+...++++.+.-|...+-.+...|-+-+-++-- ..
T Consensus 660 ifalin~ea~kear~~a~~~nlkGI~~ElsdKlENiNknLkDf~ksfde~KNGKNkDFSKv~etlk~L~~SvKDlgI-Nq 738 (876)
T 4dvy_P 660 IFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGI-NP 738 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHSTT-CH
T ss_pred HHHHhhhhhhhHHHHHHhccchhhhhHHHHHHHHHHHHHHHhhcccchhhhCCCcccHHHHHHHHHHHHhHHHHhcc-CH
Confidence 34433333333334444455555566666666666666666666666666766655655544344443333322222 23
Q ss_pred hhhhHHHHHHHHHhc---C-CCCHHH-------HHHHHHHHHHHHHHH
Q psy18020 383 ATEDTIYYMGEALRR---G-VIDLEV-------YLKQVRSLSRKQFMF 419 (434)
Q Consensus 383 AieDtiy~L~~aL~~---g-~I~ld~-------flK~vR~LaReQF~~ 419 (434)
.+.|-|.-|.+|++. | ..||.. .=+.+..|+|+|=+.
T Consensus 739 Ev~dKIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdLsrNQELt 786 (876)
T 4dvy_P 739 EWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQKVT 786 (876)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhhhhhHHHH
Confidence 467788888888853 2 335432 223666788888443
No 162
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.20 E-value=13 Score=38.58 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKFKLAR---MFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~---~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
++.+++.+++.|++.++++.+.-.+++. ..++|.++...|...+..|+++..++++.+..
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543333322 12456666666666666666666666666543
No 163
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=66.55 E-value=59 Score=27.50 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=22.5
Q ss_pred HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy18020 382 AATEDTIYYMGEALRRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 382 ~AieDtiy~L~~aL~~g~I~ld~flK~vR~La 413 (434)
..+..||..|.+-|...++.+..-+..--.|.
T Consensus 115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~Lk 146 (167)
T 4gkw_A 115 ESLTETIGILRKELENEKLKAAENMDSFEKLS 146 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999988875554444444443
No 164
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.24 E-value=56 Score=27.17 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy18020 281 VEDKIRRKM 289 (434)
Q Consensus 281 l~dkL~~~L 289 (434)
+++.|++.+
T Consensus 16 ~Ie~Lkrei 24 (120)
T 3i00_A 16 LIERLYREI 24 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 165
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=66.24 E-value=52 Score=33.65 Aligned_cols=31 Identities=0% Similarity=0.100 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy18020 284 KIRRKMNEQKVQAQEEIEILKQTENELNQGK 314 (434)
Q Consensus 284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~ 314 (434)
.|+..|.+.-+......+-+..++..+...+
T Consensus 99 ~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q 129 (461)
T 3ghg_B 99 ELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQ 129 (461)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 4444444444444444444555555555544
No 166
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.15 E-value=57 Score=27.20 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=10.7
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 373 QILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 373 Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
+.-+|.++-.-++|-+.-|.+-|
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555554444443
No 167
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=65.93 E-value=11 Score=30.25 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhc--C--CCCCCccccccccchHHHHHHHh-h-------HHHHhhhhHHHHHHHHHhcCCCCHHHH
Q psy18020 338 LKEKETELDEILAVLT--E--KTEVDVDEAVTTTAPIYKQILNT-F-------TEEAATEDTIYYMGEALRRGVIDLEVY 405 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~--~--k~~~diDe~i~~~~~l~~Ql~~l-~-------Aed~AieDtiy~L~~aL~~g~I~ld~f 405 (434)
|+..+++|.+.-...+ + .+.++.+|+ ++++.. . ..+..+++.|..+|. =..|.|+++.|
T Consensus 5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL--------~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~-dgDG~Idf~EF 75 (101)
T 3nso_A 5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAEL--------KELLQKELATWTPTEFRECDYNKFMSVLDT-NKDCEVDFVEY 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTEECHHHH--------HHHHHHHTTTCCCCTTCHHHHHHHHHHHHH-CCCSCEEHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEECHHHH--------HHHHHHHhhhhcCCCCCHHHHHHHHHHhCC-CCCCCCcHHHH
Confidence 4445555555555553 1 255777773 223321 1 124445555555543 24789999999
Q ss_pred HHHHHHHHHH
Q psy18020 406 LKQVRSLSRK 415 (434)
Q Consensus 406 lK~vR~LaRe 415 (434)
++-+..++-.
T Consensus 76 ~~~~~~~~~~ 85 (101)
T 3nso_A 76 VRSLACLCLY 85 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.78 E-value=79 Score=40.19 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~ 341 (434)
.+.=++.|..+.+....-+.+|.....+|++.+.+.++.++.+..+
T Consensus 1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444333
No 169
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.63 E-value=41 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 311 NQGKFKLARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 311 ~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
.+..++|.+++-.|.-+.+.|++.+..|++
T Consensus 45 ~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 45 NKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 344466888887777777777776666553
No 170
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.38 E-value=43 Score=28.03 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy18020 296 AQEEIEILKQTEN 308 (434)
Q Consensus 296 ~~~ele~L~~~q~ 308 (434)
++.+++.++..++
T Consensus 50 L~~el~~l~~~~~ 62 (131)
T 3tnu_A 50 LEIELQSQLSMKA 62 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3444444443333
No 171
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=64.84 E-value=69 Score=27.70 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 286 ~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
...|.+-..++.+|++.=.++...|+......+..+.+.+..-+++++-..++.....+|++-+..|
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4445555556666666666666666666655555555555555555565666666666666666554
No 172
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.67 E-value=49 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.|......|......|...+.+.+..+..|...-..|..++.+++.-+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444333355555555555555555555555555444
No 173
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=64.47 E-value=20 Score=28.27 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhc--CC--CCCCccccccccchHHHHHHHh-hH-------HHHhhhhHHHHHHHHHhcCCCCHHHH
Q psy18020 338 LKEKETELDEILAVLT--EK--TEVDVDEAVTTTAPIYKQILNT-FT-------EEAATEDTIYYMGEALRRGVIDLEVY 405 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~--~k--~~~diDe~i~~~~~l~~Ql~~l-~A-------ed~AieDtiy~L~~aL~~g~I~ld~f 405 (434)
|+..++++.+.-.... ++ +.++.+|+ ++++.. .. .+..+++.|..++. =..|.|+++.|
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL--------~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~-d~DG~Idf~EF 76 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEM--------KELLHKELPSFVGEKVDEEGLKKLMGSLDE-NSDQQVDFQEY 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHH--------HHHHHHHCHHHHCSSCCHHHHHHHHHHHCT-TSSSSBCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHH--------HHHHHHHhhhhccCCCCHHHHHHHHHHhCC-CCCCCCcHHHH
Confidence 4445555655555543 22 36788873 222221 11 13344444443332 14689999999
Q ss_pred HHHHHHHHHH
Q psy18020 406 LKQVRSLSRK 415 (434)
Q Consensus 406 lK~vR~LaRe 415 (434)
++-++.++..
T Consensus 77 ~~~~~~~~~~ 86 (98)
T 3n22_A 77 AVFLALITVM 86 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 174
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=63.67 E-value=78 Score=31.73 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CccccccccchHHHHHH-HhhHHHHhhhhHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV-DVDEAVTTTAPIYKQIL-NTFTEEAATEDTIYYMG 392 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~-diDe~i~~~~~l~~Ql~-~l~Aed~AieDtiy~L~ 392 (434)
.-|..+...|++.++.|+.....|......+++.+... ++. -||.++. -+...|= -+-...++|++.|.|..
T Consensus 206 ~LL~Ets~tLRELqdtL~aagD~lq~qLl~IQ~~~~~~---~~l~~vd~l~~---~Lq~kLDRI~sWGqqsidlWigYdr 279 (440)
T 3euh_A 206 LLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMTH---DDLHFVDRLVF---DLQSKLDRIISWGQQSIDLWIGYDR 279 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SSCGGGTTTHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---chhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444321 221 1233221 0111111 12234577888887665
Q ss_pred HHHh--cCCCCHH
Q psy18020 393 EALR--RGVIDLE 403 (434)
Q Consensus 393 ~aL~--~g~I~ld 403 (434)
.-.+ |-.||+|
T Consensus 280 hVHkfIRtaIdmD 292 (440)
T 3euh_A 280 HVHKFIRTAIDMD 292 (440)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcC
Confidence 5444 4566665
No 175
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.66 E-value=19 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 324 IDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 324 Le~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
|+++-..|+..++.|++..+.|++.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 176
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=63.55 E-value=64 Score=27.46 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=8.5
Q ss_pred HhhhhHHHHHHHHHh
Q psy18020 382 AATEDTIYYMGEALR 396 (434)
Q Consensus 382 ~AieDtiy~L~~aL~ 396 (434)
..|++++..|.|.++
T Consensus 121 ekI~El~~~I~k~~R 135 (136)
T 4adz_A 121 AKVEEATKAIGRLLR 135 (136)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 446666666665553
No 177
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.24 E-value=22 Score=23.14 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
|++.+++|..++..|+..+.+|+.-..+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 5555666666666666666666554443
No 178
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.18 E-value=65 Score=26.80 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18020 294 VQAQEEIEILKQTENEL 310 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL 310 (434)
+.++.+++.++..++.|
T Consensus 46 q~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33444444444444433
No 179
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=62.89 E-value=51 Score=26.13 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHhc
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKE------KAELERSISFLKEKETE-LDEILAVLT 353 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~------k~~Le~~i~~L~~~~~e-Le~~I~~l~ 353 (434)
.+++.+..|....+-|++|--+++.. +..+...+...+.+.+. +++-+..+.
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666665555555444444 77777788888888887 777776663
No 180
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=62.88 E-value=25 Score=25.14 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy18020 328 KAELERSIS 336 (434)
Q Consensus 328 k~~Le~~i~ 336 (434)
+..||..+.
T Consensus 40 Rk~LE~~vr 48 (56)
T 2w6b_A 40 RKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 181
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=62.83 E-value=25 Score=27.23 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhc--CC--CCCCccccccccchHHHHHHHh-hH-------HHHhhhhHHHHHHHHHhcCCCCHHHH
Q psy18020 338 LKEKETELDEILAVLT--EK--TEVDVDEAVTTTAPIYKQILNT-FT-------EEAATEDTIYYMGEALRRGVIDLEVY 405 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~--~k--~~~diDe~i~~~~~l~~Ql~~l-~A-------ed~AieDtiy~L~~aL~~g~I~ld~f 405 (434)
|+..++++.+.-.... ++ +.++.+|+ ++++.. .. .+..+++.|..++. =..|.|+++.|
T Consensus 5 le~~~~~l~~~F~~fd~~dg~~G~Is~~EL--------~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~-d~DG~Idf~EF 75 (93)
T 4eto_A 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSEL--------KELLTRELPSFLGKRTDEAAFQKLMSNLDS-NRDNEVDFQEY 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSTTSBCHHHH--------HHHHHHHCGGGC---CCHHHHHHHHHHHCT-TSSSSBCHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCeECHHHH--------HHHHHHHhhhhccCCCCHHHHHHHHHHHCC-CCCCCCcHHHH
Confidence 4444555555555553 22 46777773 233321 11 13334444443332 14689999999
Q ss_pred HHHHHHHHHHH
Q psy18020 406 LKQVRSLSRKQ 416 (434)
Q Consensus 406 lK~vR~LaReQ 416 (434)
++-++.++...
T Consensus 76 ~~~~~~~~~~~ 86 (93)
T 4eto_A 76 CVFLSCIAMMC 86 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877543
No 182
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=62.70 E-value=63 Score=26.46 Aligned_cols=61 Identities=20% Similarity=0.103 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFE--------RIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 290 ~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~--------eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
++.+.-.+..++.++..+++|....++++.... +.+.....|++.+..+..+++++..-|+
T Consensus 30 K~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 30 REELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456667778888888765555533332 4455567777777777777777655554
No 183
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=62.58 E-value=21 Score=28.56 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++-+..+++
T Consensus 70 dG~I~f~EF~~~~~~~~~ 87 (113)
T 1xk4_C 70 DKQLSFEEFIMLMARLTW 87 (113)
T ss_dssp SSSBCHHHHHHHHHHHHH
T ss_pred CCCEeHHHHHHHHHHHHH
Confidence 689999999999887764
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=62.52 E-value=25 Score=37.88 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy18020 274 KMSLKSAVEDKIR 286 (434)
Q Consensus 274 r~sl~sal~dkL~ 286 (434)
+..++.++.+.+.
T Consensus 590 ~~~~~~~~~~~~~ 602 (695)
T 2j69_A 590 RRELVKTAKKELV 602 (695)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 185
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=62.10 E-value=1.3 Score=43.90 Aligned_cols=90 Identities=9% Similarity=0.062 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHH-HHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFKLARMF-------------ERIDKEKAELERSI-SFL 338 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~L~~~~-------------~eLe~~k~~Le~~i-~~L 338 (434)
..|.+.|..|.++++..+++..+. ...++.++...++++=-.+ ...+.....|.+.+ .++
T Consensus 135 ~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~~~R~e~~~vd~~~a~~DA~~L~~A~~~~~ 214 (346)
T 1hm6_A 135 DTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRK 214 (346)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSCCHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhhccccccCCCCchHHHHHHHHHHHHHhccC
Confidence 467778888888888877777665 4456677766655532222 22455566666665 335
Q ss_pred HHHHHHHHHHHHHhc------------CCCCCCccccccccc
Q psy18020 339 KEKETELDEILAVLT------------EKTEVDVDEAVTTTA 368 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~------------~k~~~diDe~i~~~~ 368 (434)
.++++.+.++++..+ ..-..++++.|..++
T Consensus 215 Gtde~~li~IL~tRS~~~L~~i~~~Y~~~~g~~Le~~I~~e~ 256 (346)
T 1hm6_A 215 GTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLEL 256 (346)
T ss_dssp SCCHHHHHHHHHHSCHHHHHHHHHHHHTTCCCCTTSBCCCCC
T ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHc
Confidence 555565666666543 223346667665544
No 186
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.85 E-value=62 Score=26.12 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc---cccccchH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE---AVTTTAPI 370 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe---~i~~~~~l 370 (434)
|+..+..|+.+.+ +|.++.+.|+.+|+...-.++.|.+. +-...+|+
T Consensus 17 lr~ei~~Le~E~~-------rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa 66 (100)
T 1go4_E 17 LRLKVEELEGERS-------RLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPT 66 (100)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChH
Confidence 4555555555444 44556666666666655567777754 22444554
No 187
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.76 E-value=41 Score=26.42 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
..++....+|+.+...|+..|..|..+...|...+..+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33666777888888888888888888888888877654
No 188
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.52 E-value=37 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++..+..|+...+.|+..|..|+.+.+.+++-+..+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555544433
No 189
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.44 E-value=46 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++..+..|+...+.|+..|..|+.+.+.+++-+.++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666665555544
No 190
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.02 E-value=32 Score=23.22 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
|+....+|+..-++|+..+..|+.+...|.+.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 444444555555555556666666665555544
No 191
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=60.89 E-value=24 Score=27.86 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCCCCccccccccchHHHHHHHh-h---HHHHhhhhHHHHHHHHH---hcCCCCHHH
Q psy18020 337 FLKEKETELDEILAVLTE-----KTEVDVDEAVTTTAPIYKQILNT-F---TEEAATEDTIYYMGEAL---RRGVIDLEV 404 (434)
Q Consensus 337 ~L~~~~~eLe~~I~~l~~-----k~~~diDe~i~~~~~l~~Ql~~l-~---Aed~AieDtiy~L~~aL---~~g~I~ld~ 404 (434)
.|+..++++.+.-..... .+.++.+|+ ++++.. . ..+.--++.+..+=+.+ ..|.|+++.
T Consensus 5 ~le~~i~~l~~~F~~fD~~~g~~~G~Is~~EL--------~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~E 76 (100)
T 3nxa_A 5 ELEKAVIVLVENFYKYVSKYSLVKNKISKSSF--------REMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDE 76 (100)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCSCTTCBCHHHH--------HHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcCCCCCCeEcHHHH--------HHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHH
Confidence 355566667777766643 356777773 222221 1 11111122233333333 368999999
Q ss_pred HHHHHHHHHHH
Q psy18020 405 YLKQVRSLSRK 415 (434)
Q Consensus 405 flK~vR~LaRe 415 (434)
|++-+..++.+
T Consensus 77 F~~~m~~~~~~ 87 (100)
T 3nxa_A 77 YWTLIGGITGP 87 (100)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 192
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.87 E-value=72 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.+....+|...+..|+..+..+.++.++.+.....+
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444
No 193
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=60.54 E-value=58 Score=25.35 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy18020 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331 (434)
Q Consensus 282 ~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~L 331 (434)
..+|...+..+=.++.+.-|++..++.|-....+.|+.++..|+...+.|
T Consensus 31 ~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~~nkRL 80 (85)
T 2ba2_A 31 QTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQGINKRL 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555555555555666666666666554444444544444444443333
No 194
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.36 E-value=32 Score=25.09 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
|+.....|+.+...|...|..|.++...|...+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666667777777776666554
No 195
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=60.36 E-value=46 Score=24.20 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~L 331 (434)
++.+.+|.+..+.|...-..+++++.+|+.+...|
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 33344444444444333333555555555554444
No 196
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.26 E-value=19 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.+..|+.....|+..+..|+.+...|+.-|..+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666677777777777777777776553
No 197
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.15 E-value=53 Score=33.51 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 306 TENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 306 ~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
...+|+....-|++.+..=-..-..|+.+|+.+..++..||..|
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333222333334444444444444444333
No 198
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=60.10 E-value=23 Score=27.06 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=16.6
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q psy18020 396 RRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 396 ~~g~I~ld~flK~vR~LaRe 415 (434)
+.|.|+++.|++-+..|+..
T Consensus 65 ~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 65 GDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp SSSSBCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH
Confidence 36899999999998887753
No 199
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.69 E-value=38 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.500 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 323 RIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.|+...+.|++.|..|.++++.|+..+
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555443
No 200
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.56 E-value=30 Score=25.00 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
|+.....|+.+...|...+..|..+...|...|
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555566666666666666666666665443
No 201
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=59.34 E-value=35 Score=30.90 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQ---GKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 302 ~L~~~q~EL~~---~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
.|+++++++.. ....|+...++|.++.+.|+.+++.|+....+.
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ 77 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSER 77 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhc
Confidence 34444444433 233355555556666666666666665554444
No 202
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=59.27 E-value=45 Score=29.51 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
......+|+.+.+.|+-.+..|....+.-..||...
T Consensus 122 q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 122 QASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 444444666677777777777777777777777643
No 203
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=59.08 E-value=15 Score=29.55 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSRKQFMFRALLFKCY 427 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~ 427 (434)
.|.|+++.|++-+..+++.. ..--+.|++
T Consensus 76 dG~Idf~EF~~~~~~~~~~~--~~ek~~~~~ 104 (106)
T 2h2k_A 76 DSELKFNEYWRLIGELAKEI--RKKKDLKIR 104 (106)
T ss_dssp SSSEEHHHHHHHHHHHHHHH--HHHC-----
T ss_pred CCCCcHHHHHHHHHHHHHHh--hHHHHHHhh
Confidence 68999999999998776543 333344444
No 204
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=59.02 E-value=57 Score=29.97 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy18020 399 VIDLEVYLKQVRSLSRKQFMF 419 (434)
Q Consensus 399 ~I~ld~flK~vR~LaReQF~~ 419 (434)
.++|...-+.++.++|| |+.
T Consensus 113 ~m~l~~i~~tM~efekE-~~k 132 (218)
T 3frt_A 113 LVKIPEIQATMRELSKE-MMK 132 (218)
T ss_dssp STTSHHHHHHHHHHHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHH-HHH
Confidence 56788888999999886 543
No 205
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=58.98 E-value=12 Score=36.17 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR 396 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~ 396 (434)
..-......|...+.+++++.+.|.++|......+-.+|.+ .|++.|...-++.--+||...+.++|-
T Consensus 243 ~~~~~~A~~L~~am~g~Gtd~~~Liriiv~rse~dl~~Ik~-------~y~~~yg~~L~~~I~~etsGdy~~~Ll 310 (315)
T 1dm5_A 243 NRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKE-------TFQAMYGKSLYEFIADDCSGDYKDLLL 310 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTTHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHHH
T ss_pred CchHHHHHHHHHHhhcCCCCHHHHhHHHHhcCHHHHHHHHH-------HHHHHhCCcHHHHHhhhCcHHHHHHHH
Confidence 44456788889999999999999999988653323234444 899999999999999999999998873
No 206
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=58.95 E-value=71 Score=25.91 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 301 EILKQTENELNQ-GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 301 e~L~~~q~EL~~-~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+.+..++++ .. ..-.|+....-|++-+.-|-....+|....++|+++|..+
T Consensus 32 ~riek~k~~-~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~~ 83 (106)
T 1qsd_A 32 AHVAKLKED-KSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTY 83 (106)
T ss_dssp HHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 344445443 11 2455888888888899999999999999999999999644
No 207
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.81 E-value=6.9 Score=23.40 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 322 ERIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
..|+++.+.|++.|..|+++++.|.
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3577777888887777777766553
No 208
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.40 E-value=83 Score=27.27 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.5
Q ss_pred HHHHHHh
Q psy18020 306 TENELNQ 312 (434)
Q Consensus 306 ~q~EL~~ 312 (434)
++.+|..
T Consensus 73 L~~El~~ 79 (152)
T 3a7p_A 73 LQKELKS 79 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 209
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=57.67 E-value=6.2 Score=38.48 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI 302 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~ 302 (434)
..+.+.|..|.++++..+.+..+.
T Consensus 110 ~~lieIL~~Rs~~ql~~I~~aY~~ 133 (322)
T 2zhj_A 110 GCLIEILASRNPEEIRRINQTYQQ 133 (322)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355566666667777666666554
No 210
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.24 E-value=62 Score=26.53 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy18020 327 EKAELERSI 335 (434)
Q Consensus 327 ~k~~Le~~i 335 (434)
++..|...+
T Consensus 91 eKe~L~~ql 99 (110)
T 2v4h_A 91 KKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 211
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=57.11 E-value=19 Score=25.19 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
++..+-+...+.+-..|..+..++++||+.|
T Consensus 17 qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 17 QMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3333444455555555666666666666554
No 212
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=57.11 E-value=13 Score=36.13 Aligned_cols=46 Identities=13% Similarity=0.409 Sum_probs=36.0
Q ss_pred HHHHHHhhHHHHhh------------hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 371 YKQILNTFTEEAAT------------EDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 371 ~~Ql~~l~Aed~Ai------------eDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
|+.+.+.++|..-+ +|.|..|.++|+... .++..+..+|.+++.||
T Consensus 124 ~~~i~~~~~e~~~~~~~~~~~~~~~~~~sl~~l~~~l~~~~-~~~~d~~~ir~i~~yqF 181 (306)
T 2q07_A 124 YRKVVERVEDEVEAEVVYTAEKDVLSDESIERLKQEIESKG-KVDLYRRILEHMLSYQF 181 (306)
T ss_dssp HHHHHHHHHTTCSSEEEECCSSCTTSHHHHHHHHHHHCCSS-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEeecCCCCCHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHHc
Confidence 66666666664444 588999999999543 57799999999999999
No 213
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=56.98 E-value=89 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 323 RIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.|+....+-...+..|+....+-.+++..+
T Consensus 42 ~L~~i~~~K~~ll~~L~~~~~~R~~~l~~l 71 (154)
T 3opc_A 42 SLQAAVQRKETLADDLAQLGAERDALLSGA 71 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344333333444444444444444555544
No 214
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=56.69 E-value=47 Score=28.71 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 314 KFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 314 ~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
-..+......|.+++++..+.+..++++++.+..-|
T Consensus 81 ~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kI 116 (148)
T 3gn4_A 81 LDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKI 116 (148)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666677777766666677777766666655544
No 215
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=56.28 E-value=62 Score=24.92 Aligned_cols=19 Identities=42% Similarity=0.384 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy18020 334 SISFLKEKETELDEILAVL 352 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l 352 (434)
.+..|+.++.+|++-|++.
T Consensus 53 ~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 53 AVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655543
No 216
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=56.08 E-value=57 Score=25.58 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy18020 333 RSISFLKEKETEL 345 (434)
Q Consensus 333 ~~i~~L~~~~~eL 345 (434)
..++.|+.+..+|
T Consensus 70 ~kl~~L~~eL~eL 82 (86)
T 1cxz_B 70 RRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3333444343333
No 217
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=56.06 E-value=1e+02 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 328 KAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
...|.+.+..+.+..+.+.+..+..
T Consensus 228 ~~~L~~al~~l~~~~~~i~~l~~~q 252 (366)
T 3dyt_A 228 ETDLNDAITEAGKTYEEIASLVAEQ 252 (366)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666644
No 218
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=55.91 E-value=77 Score=25.35 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 268 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGK-----FKLARMFERIDKEKAELERSISFLKEKE 342 (434)
Q Consensus 268 ~~~e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~-----~~L~~~~~eLe~~k~~Le~~i~~L~~~~ 342 (434)
.+++.-+..|...|. .|...+ .+.....+.|..++......- ..++..+.+....-+.|+.++..++.-.
T Consensus 11 LPpeqRkkkL~~Ki~-el~~ei----~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 11 LPPEQQRKRLQQQLE-ERSREL----QKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp SCHHHHHHHHHHHHH-HHHHHH----HHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665555555443 333333 222333444555544433322 3367777777777778888888888888
Q ss_pred HHHHHH
Q psy18020 343 TELDEI 348 (434)
Q Consensus 343 ~eLe~~ 348 (434)
++++..
T Consensus 86 ~e~e~~ 91 (98)
T 2ke4_A 86 AEAESR 91 (98)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888765
No 219
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.68 E-value=62 Score=25.21 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
+-+..|+.....+...+..|+.+...|..-|..|+
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666667777777777777777664
No 220
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A
Probab=54.55 E-value=34 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=15.8
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++-+..+++
T Consensus 66 dG~I~f~EF~~~~~~~~~ 83 (95)
T 1j55_A 66 DAQVDFSEFIVFVAAITS 83 (95)
T ss_dssp SSSEEHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 689999999999987765
No 221
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=54.36 E-value=24 Score=28.79 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++.+..++.
T Consensus 79 dG~Idf~EF~~~m~~~~~ 96 (113)
T 2lnk_A 79 DNEVDFQEYCVFLSCIAM 96 (113)
T ss_dssp SSCBCHHHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHHHH
Confidence 689999999998876654
No 222
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=54.26 E-value=22 Score=30.77 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=36.5
Q ss_pred CccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHHHH
Q psy18020 359 DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV--RSLSRKQFM 418 (434)
Q Consensus 359 diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~v--R~LaReQF~ 418 (434)
+++++| ..+|+|+++.--.-...++-+-.|.-.|++|.|++-.|+|.+ -.|=|+.|+
T Consensus 24 ~~~~vI---~AaYRQVf~~~~~~~~~~~r~~~lESqlrnG~IsVReFVR~LakS~~Yr~~f~ 82 (148)
T 3ohw_B 24 AVKNAI---RAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKEFIEGLGTSELYMKEFY 82 (148)
T ss_dssp HHHHHH---HHHHHHHHSSCCCHHHHHHHTHHHHHHHHTTSSCHHHHHHHHHTSHHHHHHHT
T ss_pred HHHHHH---HHHHHHHhcCccchhhhhcccccHHHHHHcCCcCHHHHHHHHHcCHHHHHHhc
Confidence 444444 348999998321111222345679999999999999998654 234466666
No 223
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=54.15 E-value=7.2 Score=30.82 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=15.9
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q psy18020 396 RRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 396 ~~g~I~ld~flK~vR~LaRe 415 (434)
+.|.|+++.|++-++..+..
T Consensus 58 ~dG~i~~~EF~~~~~~~~~~ 77 (99)
T 1qjt_A 58 GKGVLSKQEFFVALRLVACA 77 (99)
T ss_dssp SSSSCCSHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHH
Confidence 36899999999988766544
No 224
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=54.12 E-value=33 Score=29.24 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 318 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.....-|+...+.|++.+..|+...+.|+..|+.++
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555555555443
No 225
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.96 E-value=1.1e+02 Score=27.08 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFL 338 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L 338 (434)
.+|+...+++.+.+.++......+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555533333
No 226
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.92 E-value=60 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 328 KAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
...|+..+..|+++..++++.+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777776666443
No 227
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=53.48 E-value=93 Score=25.54 Aligned_cols=31 Identities=6% Similarity=0.246 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDK 326 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~ 326 (434)
++.++..|+..+..|...-..|+..-..|+.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 3444444444444443333333333333333
No 228
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.10 E-value=85 Score=25.01 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 325 DKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 325 e~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
+..-..|...+..++.++..+++.+..++.
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444444555556666666665543
No 229
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=53.04 E-value=15 Score=37.77 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=5.7
Q ss_pred HHHHHHHHHhH
Q psy18020 303 LKQTENELNQG 313 (434)
Q Consensus 303 L~~~q~EL~~~ 313 (434)
+.+.++||...
T Consensus 323 ~e~a~ael~~a 333 (551)
T 2b5u_A 323 YERARAELNQA 333 (551)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555553
No 230
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.48 E-value=42 Score=34.67 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 287 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 287 ~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
+.+.....+++++...+...-..+....+..+..+.+++..+++|+..-..+.+-.+++++.+..+-|
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444444444444443333333322223333333333333333333444444555555555543
No 231
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=52.38 E-value=53 Score=31.35 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCCHH---HHHHHHHHHHHHH
Q psy18020 389 YYMGEALRRGVIDLE---VYLKQVRSLSRKQ 416 (434)
Q Consensus 389 y~L~~aL~~g~I~ld---~flK~vR~LaReQ 416 (434)
+.+.-+=.||.|++. .|+.+||.|||.-
T Consensus 269 H~FNlLDARgaISvtER~~yI~RvR~La~~~ 299 (311)
T 3rf1_A 269 HTFNLLDARGAISVAQRQDYMLKIRELSKNC 299 (311)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333333348999987 6999999999963
No 232
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=52.19 E-value=1.8e+02 Score=28.57 Aligned_cols=45 Identities=4% Similarity=-0.117 Sum_probs=37.7
Q ss_pred CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC
Q psy18020 354 EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG 398 (434)
Q Consensus 354 ~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g 398 (434)
..+....-|++.+..-+.+.-.++..-...+..+...|..++...
T Consensus 197 ~~G~~~~~dvl~a~~~~~~a~~~l~~a~~~~~~a~~~L~~llG~~ 241 (474)
T 3d5k_A 197 DVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSG 241 (474)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456678888888888888888999999999999999999998643
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.19 E-value=47 Score=32.37 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=26.7
Q ss_pred cccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 365 TTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 365 ~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
.-.+.-|+|+++.+..+..+++++.. ..+.+|.+||.|+
T Consensus 237 a~~aIGYkE~~~yL~G~~sl~eaie~--------------i~~~TR~yAKRQ~ 275 (322)
T 3exa_A 237 SVQAIGYKEMYDYLDGNVTLEEAIDT--------------LKRNSRRYAKRQL 275 (322)
T ss_dssp GGGSTTTHHHHHHHHTSSCHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred cceeeeHHHHHHHHCCCCCHHHHHHH--------------HHHHHHHHHHHHH
Confidence 44567899999887666555554432 2367899998885
No 234
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=52.11 E-value=42 Score=21.15 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
++..++.++..+++.|..+++++..+.+.|..
T Consensus 3 eiaaieyeqaaikeeiaaikdkiaaikeyiaa 34 (36)
T 1bb1_A 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYIAA 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888888888888888877764
No 235
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=52.04 E-value=1.7e+02 Score=28.15 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHH
Q psy18020 401 DLEVYLKQVRSLSRK 415 (434)
Q Consensus 401 ~ld~flK~vR~LaRe 415 (434)
.|.+--..||+||.+
T Consensus 182 GFAVVAdEVRkLAe~ 196 (341)
T 3zx6_A 182 GFAVVAGEVRNLAQR 196 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 688889999999954
No 236
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=52.02 E-value=94 Score=25.21 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q psy18020 303 LKQTENELNQ 312 (434)
Q Consensus 303 L~~~q~EL~~ 312 (434)
+..++.+|..
T Consensus 56 le~lk~eL~~ 65 (107)
T 2no2_A 56 LESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 237
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=51.90 E-value=27 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFL 338 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L 338 (434)
++..+++.+..+..|++.+.++
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 238
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=51.87 E-value=14 Score=32.10 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=33.1
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHHHH
Q psy18020 368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR--SLSRKQFM 418 (434)
Q Consensus 368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR--~LaReQF~ 418 (434)
..+|+|+++---. .+..+-+-.|.-.|++|.|++-.|+|.+= .|=|++|+
T Consensus 30 ~AaYRQVf~~~~~-~~~~~r~~~lESql~nG~ItVReFIR~LakS~~Yr~~f~ 81 (147)
T 3osj_A 30 KAAYRQIFERDIT-KAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFF 81 (147)
T ss_dssp HHHHHHHHSSCCC-GGGCHHHHHHHHHHHHTSSCHHHHHHHHHHSHHHHHHHT
T ss_pred HHHHHHHhcCcch-hhhhcccccHHHHHHcCCccHHHHHHHHHcCHHHHHHhc
Confidence 4589999973100 12234467899999999999999976542 33345555
No 239
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.82 E-value=47 Score=28.14 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 308 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 308 ~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
+.|....+.|+..+.+|+...+.|+..+..+++...+.++
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~ 123 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555544444433
No 240
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=51.80 E-value=11 Score=35.57 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=12.1
Q ss_pred CccccccccchHHHHHHHhhH
Q psy18020 359 DVDEAVTTTAPIYKQILNTFT 379 (434)
Q Consensus 359 diDe~i~~~~~l~~Ql~~l~A 379 (434)
++|..-....-+.|-|++|+-
T Consensus 227 ~~~~~~~~~~~~~~~lw~l~~ 247 (250)
T 2ve7_C 227 HLDSTQLSRKFISDYLWSLVD 247 (250)
T ss_dssp EECSTTSCHHHHHHHHHTCC-
T ss_pred ecCccccChhHHHHHHHHHhc
Confidence 445544555566777777663
No 241
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=51.63 E-value=75 Score=28.86 Aligned_cols=31 Identities=6% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.+++.....++.....+......+++.....
T Consensus 85 ~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~ 115 (279)
T 3c98_B 85 EELEELMSDIKKTANKVRSKLKSIEQSIEQE 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555544443
No 242
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=51.39 E-value=60 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++-++.++.
T Consensus 63 dG~I~~~EF~~~~~~~~~ 80 (93)
T 1xk4_A 63 DGAVNFQEFLILVIKMGV 80 (93)
T ss_dssp SSSBCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 689999999998877653
No 243
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=51.26 E-value=18 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.2
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|+.-++.++.
T Consensus 70 dg~I~~~EF~~~~~~~~~ 87 (99)
T 1qls_A 70 DGQLDFQEFLNLIGGLAI 87 (99)
T ss_dssp SSSBCHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHH
Confidence 689999999998887654
No 244
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=50.82 E-value=20 Score=26.66 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 307 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 307 q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
-.+.+..+.+|++.+.-++..+++|+..+..|+++.++.
T Consensus 21 v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~ 59 (64)
T 3t97_C 21 VEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444445577777777777777777777666655543
No 245
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.49 E-value=47 Score=28.13 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
|+..+.+|++....|+.....|+.+++..++.+
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 246
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=50.18 E-value=30 Score=28.17 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
|+.++.+|+++...|++.|..+++.+..+
T Consensus 11 Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 11 LTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 247
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=49.85 E-value=45 Score=32.75 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=21.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
|..++......+.+.+..+.+|..-+..|......+++....|
T Consensus 125 L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l 167 (346)
T 2nrj_A 125 ITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELL 167 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHH
Confidence 4444455555555555555555555555554444444444433
No 248
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=49.78 E-value=1.2e+02 Score=25.80 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCC--CccccccccchHHHHHHHhhHHHHhhhhH--HHHHHHHHhc
Q psy18020 326 KEKAELERSISFLKEKETELDEILAVL----TEKTEV--DVDEAVTTTAPIYKQILNTFTEEAATEDT--IYYMGEALRR 397 (434)
Q Consensus 326 ~~k~~Le~~i~~L~~~~~eLe~~I~~l----~~k~~~--diDe~i~~~~~l~~Ql~~l~Aed~AieDt--iy~L~~aL~~ 397 (434)
+.-+.++..+..|-+....+..||.-+ +++..+ .|.+ .+.+.|=+.-.+=.+.-|+ =||..||=--
T Consensus 10 ~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQe------evl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v 83 (140)
T 1avo_B 10 VLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQE------KVFELMTSLHTKLEGFHTQISKYFSERGDAV 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777778889999877 233332 2222 1111111111111111122 2555555322
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q psy18020 398 GV----IDLEVYLKQVRSLSRKQFMF-RALLFKCYKH 429 (434)
Q Consensus 398 g~----I~ld~flK~vR~LaReQF~~-Ra~~~Ki~~~ 429 (434)
.+ =.++.|-.-|+++=.+||+. |..+.-+|+.
T Consensus 84 ~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~ 120 (140)
T 1avo_B 84 TKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNA 120 (140)
T ss_dssp HHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 25678999999999988875 7777777653
No 249
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=49.76 E-value=12 Score=28.43 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=12.8
Q ss_pred cCCCCHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRS 411 (434)
Q Consensus 397 ~g~I~ld~flK~vR~ 411 (434)
.|.|+++.|++.++.
T Consensus 75 dg~I~~~EF~~~~~~ 89 (91)
T 2pmy_A 75 DGAITFQEFARGFLG 89 (91)
T ss_dssp SSEECHHHHTHHHHH
T ss_pred CCCEeHHHHHHHHHH
Confidence 689999999988764
No 250
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.67 E-value=44 Score=34.09 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 295 QAQEEIEILKQTENELNQGKF-------KLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 295 q~~~ele~L~~~q~EL~~~~~-------~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
+++.+++.|++.++++.+.-. ..+..+.+.+..+++++..-..+.+..+++++.+..+-|
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444445544444443321 123444555555555555555555556666666666654
No 251
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=49.43 E-value=76 Score=34.03 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 306 TENELNQGKFKLARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 306 ~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
++.++...+..|++.+...+.....++...++|+.
T Consensus 635 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 635 INDDIVSRKSELDNLVKQKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33333443344444443333333333333333333
No 252
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=49.39 E-value=42 Score=29.58 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=12.2
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
+..++++..-+..+.+++
T Consensus 111 n~~m~l~~i~~~M~e~~~ 128 (179)
T 2gd5_A 111 QSLVKIPEIQATMRELSK 128 (179)
T ss_dssp TSSTTSSSCCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 346677777777777755
No 253
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.29 E-value=51 Score=21.48 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKE 342 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~ 342 (434)
|++-+++|-..+..|+..+.+|++-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44445555555555555555554433
No 254
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=49.14 E-value=2.1e+02 Score=28.46 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=29.8
Q ss_pred hHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q psy18020 378 FTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMF 419 (434)
Q Consensus 378 ~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~ 419 (434)
.-|-.++|+++.. .+|.+|.++-+.|.+-+..++.++...
T Consensus 195 aKE~agqeRAl~a--~~~a~g~~~~~~~~~~~~l~~~q~~~l 234 (423)
T 4akk_A 195 GKELAGQERALGA--LGFARGQFSDELRQQLVDRIDGQQPCF 234 (423)
T ss_dssp HHHHHHHHHHHHH--HHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455667777764 478899999999999888888655444
No 255
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.13 E-value=45 Score=20.71 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 318 ARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
+.+++.|+..-++|++.+.+|++
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 256
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.68 E-value=1.3e+02 Score=31.08 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 329 AELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 329 ~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
++|+..-..+.+..+++++.+..+-|
T Consensus 130 ~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 130 KQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33333333333344444455555543
No 257
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.67 E-value=1e+02 Score=24.61 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDK----EKAELERSISFLKEKETELDE 347 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~----~k~~Le~~i~~L~~~~~eLe~ 347 (434)
.+++.+..|+...+-|++|--+++. .+..+...+...+.+.+.|++
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666555555554443 445555555555555555443
No 258
>3i9y_A Sensor protein; stacked two four-helix bundles, ATP-binding, kinase, nucleotide-binding, phosphoprotein, transferase, transmembrane; 2.16A {Vibrio parahaemolyticus} PDB: 3o1i_A* 3o1h_A* 3o1j_A
Probab=48.62 E-value=1.8e+02 Score=27.54 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18020 331 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR 410 (434)
Q Consensus 331 Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR 410 (434)
|...++..-++....-..+..+.....-+.+.++++ ..-.+|+++- ....+++-..||+.++ +|||.. .+.-
T Consensus 93 L~~~~~~~~~~l~~aa~~l~eL~~tqvaNa~t~~~A---~ls~iYdlie-~~~~~~~~~aLD~LiE---~DLd~~-eRm~ 164 (276)
T 3i9y_A 93 LAKEIDTRVEEMRLLSEELEQLTRTQVQNTSTIAVA---NVTHIYDLLE-ANKKDQVYQALDALVE---VDLDLT-ERLH 164 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC----------------------------------------------CHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhh-cCchhHHHHHHHHHHH---HhhhHH-HHHH
Confidence 333334444444444444555544444455554433 3456788773 2444566666666654 455543 3333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 411 SLSRKQFMFRALLFKCYK 428 (434)
Q Consensus 411 ~LaReQF~~Ra~~~Ki~~ 428 (434)
+|-+-=|..+-+|..+..
T Consensus 165 ELrl~Al~l~~~i~~~~~ 182 (276)
T 3i9y_A 165 ELHLLAFKMLNQIEEART 182 (276)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555555443
No 259
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=48.60 E-value=40 Score=26.29 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaR 414 (434)
.|.|+++.|++-+..+++
T Consensus 67 dG~I~f~EF~~~~~~~~~ 84 (99)
T 2y5i_A 67 DNEVDFNEFVVLVAALTV 84 (99)
T ss_dssp SSSEEHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHH
Confidence 689999999998887764
No 260
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=48.28 E-value=1e+02 Score=24.59 Aligned_cols=71 Identities=13% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 282 ~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.+++..-+-..-.++..--..+......+......|++--.+|...+.+++++.++|++-.++.++.+.++
T Consensus 22 ~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~ 92 (114)
T 2xzr_A 22 IARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKI 92 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 261
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=48.26 E-value=82 Score=24.03 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
|.++..-|..-...|+..+..|++++..||..|+-++
T Consensus 29 I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLE 65 (75)
T 3p8c_E 29 IKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888889999999999999999999888775
No 262
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=48.26 E-value=82 Score=29.41 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy18020 410 RSLSRKQFMFRALLFKCYKH 429 (434)
Q Consensus 410 R~LaReQF~~Ra~~~Ki~~~ 429 (434)
+.|-|++--.|..++|+.+.
T Consensus 204 ~~LRkK~D~lk~sv~KvE~v 223 (249)
T 3axj_A 204 DGLRKRFDALKYDVKKIEEV 223 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 46778888889999998753
No 263
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.20 E-value=85 Score=31.58 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKF-KLARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~-~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
.+.+++.+++.|++.++++.+.-. +-.....+|.++...|.+.+..|+++..++++.+..
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666555554211 011223445555555666666666666666555543
No 264
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.93 E-value=22 Score=29.64 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=12.7
Q ss_pred HHhhhhHHHHHHHHHhc
Q psy18020 381 EAATEDTIYYMGEALRR 397 (434)
Q Consensus 381 d~AieDtiy~L~~aL~~ 397 (434)
+..++||+.+|++-++.
T Consensus 83 E~~~~eA~~~l~~r~~~ 99 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNE 99 (133)
T ss_dssp EEEHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHH
Confidence 56678888888887654
No 265
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.69 E-value=1e+02 Score=24.30 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
|++.+..+..++..|+..+..|..+..++
T Consensus 61 Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 61 LRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444443
No 266
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.41 E-value=59 Score=32.73 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHh
Q psy18020 301 EILKQTENELNQ 312 (434)
Q Consensus 301 e~L~~~q~EL~~ 312 (434)
+.+.++++++..
T Consensus 24 ~~~~~~~~~~~~ 35 (412)
T 3u06_A 24 RCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 267
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=47.39 E-value=1.2e+02 Score=26.90 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHHH------HhcCCC-----CHHHHHHHHHHHHHH
Q psy18020 370 IYKQILNTFTEEAATEDTIYYMGEA------LRRGVI-----DLEVYLKQVRSLSRK 415 (434)
Q Consensus 370 l~~Ql~~l~Aed~AieDtiy~L~~a------L~~g~I-----~ld~flK~vR~LaRe 415 (434)
+-+||..+.--...+-++-..|+.. |.+++. +||.|+=-.|.+--+
T Consensus 98 l~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl~~La~~~~~~~~DdLDrfVmvaR~vPdD 154 (176)
T 2l81_A 98 MKRELQRVEDSHQILSQTSHDLNECSWSLNILAINKPQNKCDDLDRFVMVAKTVPDD 154 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTCCSSCTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCcHHHHccCCCCCCcchHHHHHHhhccCCHH
Confidence 4455555555555566665555443 433333 789998877776543
No 268
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.67 E-value=1.8e+02 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy18020 331 LERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 331 Le~~i~~L~~~~~eLe~~I~~l 352 (434)
|+..+..++.++++|+..|..+
T Consensus 110 l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 110 LTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333444444444444444
No 269
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.49 E-value=67 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
..+....++...+.|...+..|+..+.+=++
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~ 86 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEVKEALKQREE 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 270
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.43 E-value=1e+02 Score=23.91 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
++.++.+|+..-+++...+..|.+...+
T Consensus 32 Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 32 NQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 271
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=46.27 E-value=1.1e+02 Score=31.53 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKM 289 (434)
Q Consensus 279 sal~dkL~~~L 289 (434)
+.+.++....|
T Consensus 117 ~~I~~k~g~~l 127 (526)
T 3iyk_A 117 DKIKEKFGKEL 127 (526)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 272
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.25 E-value=72 Score=32.15 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=11.0
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020 373 QILNTFTEEAATEDTIYYMGEALR 396 (434)
Q Consensus 373 Ql~~l~Aed~AieDtiy~L~~aL~ 396 (434)
++..+-+.....+..|..|...|+
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHH
Confidence 333343334444455555555444
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.85 E-value=66 Score=31.26 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.3
Q ss_pred cccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 365 TTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 365 ~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
.-.+.-|+|+++.+..+..+++++. ...+.+|.+||.|+
T Consensus 245 ~~~aIGYkE~~~yL~G~~s~~eai~--------------~~~~~TR~yAKRQ~ 283 (316)
T 3foz_A 245 SIRCVGYRQMWSYLEGEISYDEMVY--------------RGVCATRQLAKRQI 283 (316)
T ss_dssp TTTSTTHHHHHHHHHTSSCHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred cceeeehhhHHHHhcCCCCHHHHHH--------------HHHHHHHHHHHHHH
Confidence 3456689999887765544444332 24577999999996
No 274
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.75 E-value=43 Score=25.41 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy18020 332 ERSISFLKEKET 343 (434)
Q Consensus 332 e~~i~~L~~~~~ 343 (434)
+..|..|+.+.+
T Consensus 53 d~eI~~LqseLD 64 (72)
T 3nmd_A 53 DELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 275
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=45.59 E-value=79 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
|+..+..|+.+...|...+..|.++...|...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666666666666655555443
No 276
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.56 E-value=61 Score=31.59 Aligned_cols=25 Identities=4% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 324 IDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 324 Le~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
|+..-+.++..|+.|+.++.+++..
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555543
No 277
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=45.54 E-value=38 Score=33.70 Aligned_cols=10 Identities=30% Similarity=0.331 Sum_probs=5.2
Q ss_pred chhHHHHHHH
Q psy18020 134 SKLEGLIKTL 143 (434)
Q Consensus 134 s~l~~l~~~~ 143 (434)
.+|.+||...
T Consensus 78 ~SL~eLV~~Y 87 (373)
T 3hhm_B 78 SSVVELINHY 87 (373)
T ss_dssp SSSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3455555543
No 278
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=45.51 E-value=1.5e+02 Score=25.74 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHH
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEA 382 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~ 382 (434)
+...+++..+.+|...+..++.+ |+..++.+...-...+++ +++-++-++++.
T Consensus 92 ~l~~~~e~Lr~~L~~d~EelR~~---l~p~~~el~~~l~~~~Ee--------lR~kl~P~~eeL 144 (165)
T 1gs9_A 92 RLSKELQAAQARLGADMEDVRGR---LVQYRGEVQAMLGQSTEE--------LRVRLASHLRKL 144 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTSTTCCCHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 33445555566666655555443 444455555444445555 566666666653
No 279
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.34 E-value=66 Score=32.39 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
..+.+++..+++++..-..+.+..+++...+..+-|
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333344444444444444445555566666666644
No 280
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.12 E-value=67 Score=25.72 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
..|+..+..|+..-+.|+..+..++++.++++..+..
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555555555555555543
No 281
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=45.07 E-value=1.2e+02 Score=26.60 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMF-------------ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEA 363 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~-------------~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~ 363 (434)
...+|+|.++|.+++..-.+|-..+ +.|+..-+.|...+.+++....++-++-+....--..-.|.-
T Consensus 10 d~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~ 89 (163)
T 1z23_A 10 EVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRT 89 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 3445666666666666666665555 334444455555555555444444444333211100011110
Q ss_pred ccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHH
Q psy18020 364 VTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVI-----DLEVYLKQVRSLSRK 415 (434)
Q Consensus 364 i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I-----~ld~flK~vR~LaRe 415 (434)
+ ..-+-+||..+.--...+-++-..|+.-- +.. +||.|+=-.|.+--+
T Consensus 90 L--~~kl~r~Lq~l~ds~qiL~~~~~~Ld~~~--~~~~~~~DdLDrfVmvaR~vpdD 142 (163)
T 1z23_A 90 L--HAKLSRQLQKMEDVYQTLVVHGQVLDSGR--GGPGFTLDDLDRLVACSRAVPED 142 (163)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHCCS--SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhhHHHHHHHHHHHHHccC--CCCCCCcchHHHHHHhhccCCHH
Confidence 0 01233444443333344444443333221 222 788888888777543
No 282
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.06 E-value=97 Score=23.32 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18020 331 LERSISFLKEKETELDEIL 349 (434)
Q Consensus 331 Le~~i~~L~~~~~eLe~~I 349 (434)
|...+-.+.-+..-|++.+
T Consensus 51 LNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 51 LNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHH
Confidence 3333333333333344333
No 283
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.05 E-value=1.7e+02 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy18020 334 SISFLKEKETELDEILAVLT 353 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l~ 353 (434)
.+.....++.+|++.+..++
T Consensus 113 ~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 113 IYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 284
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=45.00 E-value=1.4e+02 Score=25.22 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 307 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 307 q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
.++|..--..|=+-+..|+.++..|+..+..-+-++.+|..-|.++.+
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 344444444455556667777777777777777777777666666643
No 285
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Probab=44.95 E-value=7.3 Score=30.41 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 397 ~g~I~ld~flK~vR~LaRe 415 (434)
.|.|+++.|++-++.+++.
T Consensus 69 dG~I~f~EF~~~~~~~~~~ 87 (95)
T 2wcb_A 69 DEQVDFQEFISLVAIALKA 87 (95)
T ss_dssp TSEEEHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHH
Confidence 5899999999988876544
No 286
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.93 E-value=70 Score=24.55 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
++....+|+.+...|+..|..|..++..|...+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777665544
No 287
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=44.39 E-value=2.3e+02 Score=27.40 Aligned_cols=44 Identities=7% Similarity=-0.101 Sum_probs=37.2
Q ss_pred CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhc
Q psy18020 354 EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRR 397 (434)
Q Consensus 354 ~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~ 397 (434)
..+....-|++.+..-+.+--.++..-...++.+...|..++..
T Consensus 188 ~~G~~~~~d~~~a~~~~~~a~~~~~~a~~~~~~a~~~L~~l~G~ 231 (446)
T 3pik_A 188 LTGSSNVLALEQARGVIESTRSDIAKRQGELAQANNALQLLLGS 231 (446)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCCcHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777888888888888888899999999999999999876
No 288
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=43.79 E-value=1.2e+02 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 316 KLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 316 ~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.|+....-|++-+.-|-....+|....++|+++|.
T Consensus 49 ~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 49 DIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 47777777888888888888889989999999886
No 289
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=43.76 E-value=1.6e+02 Score=27.10 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.3
Q ss_pred CHHHHHHHHH
Q psy18020 401 DLEVYLKQVR 410 (434)
Q Consensus 401 ~ld~flK~vR 410 (434)
+++.|++.++
T Consensus 221 ~~~p~~~~l~ 230 (265)
T 2q12_A 221 QLEEFLANIG 230 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.56 E-value=1.2e+02 Score=29.56 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=28.2
Q ss_pred ccccchHHHHHHHhhHHH--------HhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 364 VTTTAPIYKQILNTFTEE--------AATEDT--IYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 364 i~~~~~l~~Ql~~l~Aed--------~AieDt--iy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
-.-.+.-|+++++.+... ...+|. -..|++|+ +...+.+|.+||.|+
T Consensus 227 ~~~~aIGykE~~~yl~g~~~~~~~~~~~~~~~~~~~~l~eai-------e~ik~~TR~yAKRQ~ 283 (339)
T 3a8t_A 227 GLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAV-------RAIKENTCHLAKRQI 283 (339)
T ss_dssp GGGGSTTHHHHHHHHHHSCTTCCCCSCCTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHcCcccccccccccccchhhhcCHHHHH-------HHHHHHHHHHHHHHH
Confidence 345667899999888761 111111 01233332 455678999999997
No 291
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=43.45 E-value=45 Score=28.37 Aligned_cols=37 Identities=5% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
+.|+..+.+|++....|+..+..|+.+++.++++++.
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555566666666666666666666666666553
No 292
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=43.45 E-value=1.7e+02 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 333 RSISFLKEKETELDEILA 350 (434)
Q Consensus 333 ~~i~~L~~~~~eLe~~I~ 350 (434)
...+.++...+++++||.
T Consensus 172 ~~k~~i~~~l~~~~~~L~ 189 (219)
T 4e81_A 172 DDKTAIESALTALETALK 189 (219)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455556666666765
No 293
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=43.34 E-value=13 Score=32.35 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=33.9
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHHHH
Q psy18020 368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVR--SLSRKQFM 418 (434)
Q Consensus 368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR--~LaReQF~ 418 (434)
..+|+|+++--....-++|-+-.|.-.|++|.|++-.|+|.+= .|=|++|+
T Consensus 21 ~AaYRQVf~~~~~~~~~~~r~~~lESqLrnG~IsVReFVR~LakS~~Yr~~f~ 73 (149)
T 2ky4_A 21 SAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFY 73 (149)
T ss_dssp HHHHHHHTCSCCCHHHHHHHSHHHHHHHHHTSSCHHHHHHHHHHCHHHHHHHT
T ss_pred HHHHHHHhcCcchhhhhhcccccHHHHHHcCCccHHHHHHHHHcCHHHHHHhc
Confidence 3489998853221112246677899999999999999976542 34455665
No 294
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=43.31 E-value=1.1e+02 Score=23.49 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 291 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 291 e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
+.+++++...-++...-++|....++|..+...|--...+|=+.+...++++++.
T Consensus 26 e~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~~~ee~~ 80 (97)
T 1no4_A 26 EALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQEEDH 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccchhhHHHH
Confidence 3444555555555555666666666676666666666666666666655554443
No 295
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=43.27 E-value=1.2e+02 Score=24.07 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q psy18020 301 EILKQTENELNQGKFKLARMFERIDKEKAELE---RSISFLKEKETELDEILAVL 352 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le---~~i~~L~~~~~eLe~~I~~l 352 (434)
+.|++.+++-......+......|+.++..-. ..++.|+.++..|..-|.+.
T Consensus 32 ~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 32 DSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566666666655432 34566666666666555544
No 296
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=43.25 E-value=23 Score=34.55 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR 396 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~ 396 (434)
..-......|...+.+++++.+.|.++|......+-.+|.+ .|+++|...-++.--+||...+.++|-
T Consensus 253 ~~~~~fA~~L~~amkg~GTdd~~LiriivsR~e~dl~~Ik~-------~y~~~yg~sL~~~I~~~tsGdy~~~Ll 320 (327)
T 1w3w_A 253 NLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKC-------HFKKMYGKTLSSMIMEDTSGDYKNALL 320 (327)
T ss_dssp CHHHHHHHHHHHHHSSSSCCHHHHHHHHHHHTTTTHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCCCCChhHeeeeeeECCHHHHHHHHH-------HHHHHhCCcHHHHHhhhCChHHHHHHH
Confidence 34456778888889999998889999887642222234444 899999999999999999999888874
No 297
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.18 E-value=38 Score=33.96 Aligned_cols=7 Identities=0% Similarity=0.245 Sum_probs=3.1
Q ss_pred HHHHHhh
Q psy18020 372 KQILNTF 378 (434)
Q Consensus 372 ~Ql~~l~ 378 (434)
.++|+.+
T Consensus 123 ~~Vf~~v 129 (403)
T 4etp_A 123 VDVFKEV 129 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 298
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=42.83 E-value=2.3e+02 Score=27.12 Aligned_cols=13 Identities=0% Similarity=0.117 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q psy18020 402 LEVYLKQVRSLSR 414 (434)
Q Consensus 402 ld~flK~vR~LaR 414 (434)
+...+..++.+|.
T Consensus 148 I~~i~~~I~~IA~ 160 (341)
T 3zx6_A 148 IADIISVIDGIAF 160 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 299
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=42.73 E-value=55 Score=26.22 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 301 EILKQTENELNQGKFKLARMFERIDK----EKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~eLe~----~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
..+++.+..|....+-|++|--+++. .+..+...+...+.+.+.|++-+..+.
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776666554 567788888888888888877776654
No 300
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.70 E-value=44 Score=21.40 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++.+++|-.+...|+..+.+|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555555544
No 301
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=42.67 E-value=49 Score=20.20 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 323 RIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
.|+..+..|++.++.|+.+.+.|
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444433
No 302
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=42.65 E-value=1.1e+02 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.++...+.+|+..+..++..+++|++.|...
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566667777777777777777777654
No 303
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.47 E-value=1.7e+02 Score=25.38 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 279 SAVEDKIRR------KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 279 sal~dkL~~------~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+.++|.|.. .+.....+.+..-+.+..+..++......+++...+|..++..-...-.....-..+|+..-..|
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 304
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.35 E-value=1.4e+02 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=6.6
Q ss_pred HHHHHHhHHHHHHHHHH
Q psy18020 306 TENELNQGKFKLARMFE 322 (434)
Q Consensus 306 ~q~EL~~~~~~L~~~~~ 322 (434)
+...|....++|++...
T Consensus 47 ~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 47 HEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334443344443333
No 305
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=42.21 E-value=47 Score=24.32 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=14.9
Q ss_pred hcCCCCHHHHHHHHHHHH
Q psy18020 396 RRGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 396 ~~g~I~ld~flK~vR~La 413 (434)
+.|.|+++.|++.++.++
T Consensus 64 ~dg~i~~~eF~~~~~~~~ 81 (90)
T 1k8u_A 64 KDQEVNFQEYVTFLGALA 81 (90)
T ss_dssp TTCEEEHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 368999999999887654
No 306
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=42.20 E-value=17 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=18.0
Q ss_pred ceEEEecCCCCCCCCEeEEec
Q psy18020 12 PVCIWLMDTHPDHAPICYVRP 32 (434)
Q Consensus 12 Pi~iwl~~~yP~~~P~~~v~p 32 (434)
=+.|.+|.+||..+|.+++.-
T Consensus 62 ~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 62 TLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp EEEEEECSSTTSSCCEEEEEE
T ss_pred EEEEEcCCCCCCCCCCeEEEc
Confidence 366889999999999999864
No 307
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.96 E-value=48 Score=21.17 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++-+++|-.++..|+..+.+|+
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444455544444443
No 308
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.67 E-value=1.4e+02 Score=24.38 Aligned_cols=15 Identities=7% Similarity=0.291 Sum_probs=6.2
Q ss_pred HHHHhhhhHHHHHHH
Q psy18020 379 TEEAATEDTIYYMGE 393 (434)
Q Consensus 379 Aed~AieDtiy~L~~ 393 (434)
++-.++.|=|.+|.+
T Consensus 90 ~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 90 RKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 309
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.58 E-value=49 Score=21.12 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++-+++|-..+..|+..+.+|+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455555555555555555444
No 310
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=41.51 E-value=1.5e+02 Score=26.87 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy18020 317 LARMFERI 324 (434)
Q Consensus 317 L~~~~~eL 324 (434)
|+.+..+|
T Consensus 134 LkeEn~eL 141 (209)
T 2wvr_A 134 LKKENKEL 141 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 311
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.47 E-value=75 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
......-|+.....|+..+..|+...+.|+..+...+.
T Consensus 37 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 37 CQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555667777788888888888888888888876653
No 312
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.43 E-value=1.2e+02 Score=23.43 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy18020 334 SISFLKEKETELD 346 (434)
Q Consensus 334 ~i~~L~~~~~eLe 346 (434)
..++.++--.+|+
T Consensus 53 l~~rQrd~Y~dLD 65 (83)
T 2xdj_A 53 VVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 313
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.31 E-value=1e+02 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 327 EKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
...+++..+.+.+...++++..|.
T Consensus 104 ~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 104 VEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 314
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=41.24 E-value=1.2e+02 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 322 ERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
+.||...+++-+.|...-++-.+.+++++.|..
T Consensus 40 ~~lEsiAAKIIkDisdkId~CeCnkei~e~L~~ 72 (129)
T 3f6n_A 40 ESLETVAAKIVNDLTKLINDCPCNKEILEALGT 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHhcCcchHHHHHHHcc
Confidence 344555555555555555555556677777743
No 315
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.17 E-value=1.3e+02 Score=23.81 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 321 FERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 321 ~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
+...+.....++..+..|..+..++++.+..
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~ 96 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRR 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 316
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.85 E-value=74 Score=31.86 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy18020 336 SFLKEKETELDEIL 349 (434)
Q Consensus 336 ~~L~~~~~eLe~~I 349 (434)
.+|..++.++...|
T Consensus 48 r~l~n~~~elkgnI 61 (403)
T 4etp_A 48 RTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHCSE
T ss_pred HHHHHHHHHcCCCe
Confidence 33344444444433
No 317
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.81 E-value=51 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++-+++|-.+++.|+..+.+|+
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444444444555554444443
No 318
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=40.69 E-value=90 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|-.-+.+|+..+++++++|.+|+
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 44445556666666666555554
No 319
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.42 E-value=25 Score=30.10 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHH----
Q psy18020 309 ELNQGKFKLARMFERIDKEKAELERSISFL---KEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEE---- 381 (434)
Q Consensus 309 EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L---~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed---- 381 (434)
+|...-+.+...++.|+.+-..|...+..| ..+..++++.++.++...+-+.+-.|.-.+-+| +.....|
T Consensus 6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~y---v~g~i~~~~~V 82 (151)
T 2zdi_C 6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSF---LKGVIVDKNNA 82 (151)
T ss_dssp SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCE---EEEECSCTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeE---EEEEECCCCEE
Q ss_pred -----------HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 382 -----------AATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI 430 (434)
Q Consensus 382 -----------~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~ 430 (434)
..++||+.+|++-++.=.-.++.+-+....+..+-=..+..|+++.+.+
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 320
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.39 E-value=52 Score=21.12 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++-+++|-.++..|+..+.+|+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444444444444444444443
No 321
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=40.19 E-value=1.8e+02 Score=25.42 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=7.5
Q ss_pred HHHhhhhHHHHHHHHHh
Q psy18020 380 EEAATEDTIYYMGEALR 396 (434)
Q Consensus 380 ed~AieDtiy~L~~aL~ 396 (434)
+....+|+...|.+.|.
T Consensus 131 ~~lG~~e~~~lL~~~L~ 147 (173)
T 2gyq_A 131 EELGHDDIVRFLTTNLN 147 (173)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 322
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=40.16 E-value=64 Score=31.57 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=28.8
Q ss_pred ccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 362 EAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 362 e~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
++-.-.+.-|+|+++.+..+..+++++ +...+.+|.+||.|+
T Consensus 240 ~~~~~~aIGyke~~~yl~g~~~~~ea~--------------~~~~~~Tr~yAKRQ~ 281 (340)
T 3d3q_A 240 ASQSMQAIGYKELVPVIKGNISMENAV--------------EKLKQHSRQYAKRQL 281 (340)
T ss_dssp TSSGGGSTTTTTHHHHHHTSSCHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred cchhhhhccHHHHHHHHcCCCCHHHHH--------------HHHHHHHHHHHHHHH
Confidence 344556778999988776554444433 345678999999996
No 323
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=40.02 E-value=2.1e+02 Score=25.68 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc---cccchH--HHHH----HHhhHHHHhhhhH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAV---TTTAPI--YKQI----LNTFTEEAATEDT 387 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i---~~~~~l--~~Ql----~~l~Aed~AieDt 387 (434)
++..+.....++..|......|.++.++..+.-+.++.++. -|.+++ .++.-+ |.-. =.|.++-.-|+|-
T Consensus 92 venaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~-~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddk 170 (190)
T 3thf_A 92 TESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGV-SIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVR 170 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444666777777777777666665554443332221 111111 000001 1111 2356777778888
Q ss_pred HHHHHHHHh
Q psy18020 388 IYYMGEALR 396 (434)
Q Consensus 388 iy~L~~aL~ 396 (434)
|....+-|+
T Consensus 171 IklgeEQL~ 179 (190)
T 3thf_A 171 IKGSEEQLS 179 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHhhHHHHH
Confidence 877766554
No 324
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=39.95 E-value=1.2e+02 Score=22.75 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 333 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~ 333 (434)
++|++.|..+-..|++.-.+-..+-..|+......+.
T Consensus 16 q~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 16 QNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666655555555444444444444444433333
No 325
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=39.74 E-value=1e+02 Score=29.22 Aligned_cols=21 Identities=33% Similarity=0.776 Sum_probs=17.9
Q ss_pred hcCCCCHH---HHHHHHHHHHHHH
Q psy18020 396 RRGVIDLE---VYLKQVRSLSRKQ 416 (434)
Q Consensus 396 ~~g~I~ld---~flK~vR~LaReQ 416 (434)
.||.|++. .|+.+||.|||.-
T Consensus 260 ARgaISvtER~~yI~rvR~la~~~ 283 (298)
T 1j5w_A 260 ARGAISVSQRQTYVKRIQAMARKA 283 (298)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccCccHHHHHHHHHHHHHHHHHH
Confidence 49999885 6999999999974
No 326
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.68 E-value=53 Score=27.69 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy18020 301 EILKQTENELNQGKFKLARMFER 323 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~e 323 (434)
++|..++.|+......++..+++
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333
No 327
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=39.63 E-value=1.1e+02 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=22.4
Q ss_pred hHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy18020 378 FTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRA 421 (434)
Q Consensus 378 ~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra 421 (434)
.|+-...+|+...|.+.|+..+=.-+....+.-.|. ++|+.|.
T Consensus 120 ~A~~lG~~e~a~lL~~~L~EE~~~a~~L~~~l~~lt-~~~l~r~ 162 (171)
T 3ogh_B 120 AAKNAGDTASIPTIEAILNEEKHMADWLIQHIPQTT-EKFLIRS 162 (171)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHhcc
Confidence 456666666666677766655433222223333332 3666654
No 328
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=39.52 E-value=22 Score=27.14 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=13.8
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 397 ~g~I~ld~flK~vR~La 413 (434)
.|.|+++.|++-++.+.
T Consensus 57 dG~i~~~EF~~~~~~~~ 73 (92)
T 1fi6_A 57 DGALTLDEFCAAFHLVV 73 (92)
T ss_dssp SSEEEHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999998876543
No 329
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=39.51 E-value=2.1e+02 Score=26.62 Aligned_cols=7 Identities=29% Similarity=0.040 Sum_probs=3.1
Q ss_pred HHHHHHh
Q psy18020 390 YMGEALR 396 (434)
Q Consensus 390 ~L~~aL~ 396 (434)
.|.+||-
T Consensus 185 ~lr~aL~ 191 (253)
T 2ykt_A 185 GYKTALT 191 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 330
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=39.46 E-value=1.6e+02 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=20.7
Q ss_pred hHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy18020 378 FTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRA 421 (434)
Q Consensus 378 ~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra 421 (434)
.|+-...+|+...|.+.|+..+=..+....+.-.|. +||+.|.
T Consensus 117 ~A~~lG~~e~a~lL~~~L~EE~~~a~~L~~~l~~lt-~~~l~r~ 159 (166)
T 3hiu_A 117 AARSAGEQEVAQICEDILQQEIEMAEWLIEHQEAIV-VAFLERE 159 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhCHHHH-HHHHhcc
Confidence 355555566666666666554433222223333332 3565554
No 331
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=39.45 E-value=75 Score=33.98 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 333 RSISFLKEKETELDEILA 350 (434)
Q Consensus 333 ~~i~~L~~~~~eLe~~I~ 350 (434)
...+.+.+..+++++||.
T Consensus 578 ~~~~~~~~~l~~~~~wl~ 595 (675)
T 3d2f_A 578 AEKTKLQGMLNKAEEWLY 595 (675)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566667777888885
No 332
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=39.25 E-value=22 Score=29.65 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=18.8
Q ss_pred cceEEEecCCCCCCCCEeEEecC
Q psy18020 11 IPVCIWLMDTHPDHAPICYVRPT 33 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~pt 33 (434)
|=+.|.+|.+||..+|.+.|...
T Consensus 64 ~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 64 ITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp EEEEEECCSSTTSSCCEEEEECC
T ss_pred EEEEEECCCCCCCCCCeEEEecC
Confidence 34678899999999999988643
No 333
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=39.20 E-value=25 Score=30.31 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.7
Q ss_pred ccceEEEecCCCCCCCCEeEEec
Q psy18020 10 HIPVCIWLMDTHPDHAPICYVRP 32 (434)
Q Consensus 10 ~iPi~iwl~~~yP~~~P~~~v~p 32 (434)
.|=+.|.+|++||..+|.+.|+-
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 35678899999999999998864
No 334
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.04 E-value=59 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++-+++|-..+..|+..+.+|+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555555555555555555554
No 335
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=38.96 E-value=2.2e+02 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=17.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDK---EKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 317 L~~~~~eLe~---~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
-+..+.+|+. ..+++++|-+.|...+..-...+.
T Consensus 134 YKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcs 170 (294)
T 3caz_A 134 YKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCA 170 (294)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHH
Confidence 3444455554 345555555555555444444443
No 336
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=38.93 E-value=98 Score=25.54 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhH---HHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18020 339 KEKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFT---EEAATEDTIYYMGEALRRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~A---ed~AieDtiy~L~~aL~~g~I~ld~flK~vR~L 412 (434)
.+..+++.++....+ +.+.++.+|+. +++..+. .+..+++.+..++. =+.|.|+++.|++.++..
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~--------~~l~~~g~~~~~~e~~~l~~~~D~-d~dg~I~~~eF~~~~~~~ 115 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLK--------RMMEKLGVPKTHLEMKKMISEVTG-GVSDTISYRDFVNMMLGK 115 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHH--------HHHHHTTCCCCHHHHHHHHHHHHT-TSCSSBCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHH--------HHHHHcCCCCCHHHHHHHHHHHCC-CCCCcEeHHHHHHHHHHh
Confidence 445566666665554 24456666632 2222221 12223333333221 135899999999987653
No 337
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.76 E-value=68 Score=25.26 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 316 KLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 316 ~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.|+..+..|+..-+.|+..+..++++.++++..|
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555444
No 338
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.57 E-value=69 Score=20.84 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q psy18020 309 ELNQGKFKLARMFERIDKEKA 329 (434)
Q Consensus 309 EL~~~~~~L~~~~~eLe~~k~ 329 (434)
+|..+...|+.++.+|+..-.
T Consensus 12 eLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 12 EIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhc
Confidence 333334444445555444433
No 339
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.46 E-value=69 Score=24.96 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=38.5
Q ss_pred hHHHHhhhhHHHHHHHHHhcC-CCCHHHHHHHHHHH-HHHHHHHH---HHHHHHHHhcCCC
Q psy18020 378 FTEEAATEDTIYYMGEALRRG-VIDLEVYLKQVRSL-SRKQFMFR---ALLFKCYKHISYA 433 (434)
Q Consensus 378 ~Aed~AieDtiy~L~~aL~~g-~I~ld~flK~vR~L-aReQF~~R---a~~~Ki~~~~~l~ 433 (434)
+|+...+. -.+|.+.|++. -+++-.|++.+|.- |++....- ..|..|+..+|..
T Consensus 24 lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~ 82 (108)
T 3mn2_A 24 LTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFS 82 (108)
T ss_dssp HHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCC
T ss_pred HHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCC
Confidence 66777775 45799999875 78999999999954 44333322 2678888877764
No 340
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.27 E-value=1.4e+02 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
|+..+..+.-.+..|+..+..|.+++.-|
T Consensus 54 LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 54 FRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555666666666555555433
No 341
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=38.08 E-value=95 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
...+|++.+..+.++|+.+-+.-+.|+
T Consensus 7 vq~~l~evk~iM~~NI~~vl~RgekLd 33 (61)
T 3b5n_A 7 LQAEIDDTVGIMRDNINKVAERGERLT 33 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333333444444444444444444333
No 342
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=37.94 E-value=21 Score=28.66 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=13.2
Q ss_pred cCCCCHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSL 412 (434)
Q Consensus 397 ~g~I~ld~flK~vR~L 412 (434)
.|.|+++.|++.+..+
T Consensus 62 dG~I~~~EF~~~~~~~ 77 (111)
T 2kgr_A 62 DGKLTAEEFILAMHLI 77 (111)
T ss_dssp CSEEEHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 6899999999887654
No 343
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=37.88 E-value=73 Score=30.92 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=28.3
Q ss_pred ccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 364 VTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 364 i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF 417 (434)
-.-.+.-|+|+++.+..+..+++++ +...+.+|.+||.|+
T Consensus 250 ~~~~aIGyke~~~yl~g~~~~~eai--------------~~~~~~Tr~yAKRQ~ 289 (323)
T 3crm_A 250 PSIRAVGYRQVWDYLDGKLSYAEMT--------------ERGIIATRQLAKRQF 289 (323)
T ss_dssp SGGGSTTHHHHHHHHTTSSCHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred cchheecHHHHHHHHcCCCCHHHHH--------------HHHHHHHHHHHHHHH
Confidence 3456668999988776555544443 345678999999996
No 344
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=37.83 E-value=1.5e+02 Score=26.55 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+.++++|+..-+...++++.++ .+..+++-+..|-.-.+.+++.+.
T Consensus 61 ~~lR~~Ae~eN~rkR~~ke~~~~--~~~a~~~~~~~LLpv~DnlerAl~ 107 (197)
T 1dkg_A 61 GILRVKAEMENLRRRTELDIEKA--HKFALEKFINELLPVIDSLDRALE 107 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHTSGGGHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34444444444333333333322 222333444445555555555554
No 345
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=37.46 E-value=27 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=29.2
Q ss_pred cCcccCCCccccCCCCc---cccccchhHHHHHHHhhhhcC
Q psy18020 112 SQNVDHTGKIYSPYLHT---WTAQNSKLEGLIKTLASAFSA 149 (434)
Q Consensus 112 ~~~v~~~g~~~~pyl~~---w~~~~s~l~~l~~~~~~~f~~ 149 (434)
..+|+.+|+|.+..|.. |++. .+|..+|..+..-|.+
T Consensus 83 HPnv~~~G~iCl~iL~~~~~W~p~-~~i~~vl~~i~~ll~~ 122 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNEDQDWRPA-ITLKQIVLGVQDLLDS 122 (157)
T ss_dssp CTTBCTTSBBCCGGGCTTTTCCTT-CCHHHHHHHHHHHHTS
T ss_pred cCCCCCCCcEeeecccCCCCCCCC-CcHHHHHHHHHHHHhC
Confidence 45688999999999976 8865 7788888777777754
No 346
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.23 E-value=1.8e+02 Score=25.54 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
+..+|+......-+|++.-.+|+-.+..|...++..-.-+...+-..+.+..|+
T Consensus 115 L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~q~~in~~l 168 (170)
T 3l4q_C 115 LEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEWL 168 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhc
Confidence 344444444444445554455555555555555555544444444455555554
No 347
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=37.23 E-value=65 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 312 QGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 312 ~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
.+..+|.+...++++.+..+.+|++.+-+.-++|+...++
T Consensus 2 ~~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~k 41 (91)
T 3hd7_A 2 SHMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDR 41 (91)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
No 348
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.14 E-value=52 Score=28.48 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
|++...+++....+++..+.+.+...++++..|...
T Consensus 94 i~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 94 IDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555555555544
No 349
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.13 E-value=1.2e+02 Score=26.24 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q psy18020 302 ILKQTENELNQGKFKLARM 320 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~ 320 (434)
+|..++.|+......++..
T Consensus 93 ri~~Le~E~~~~~~el~~~ 111 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEA 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 350
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=37.05 E-value=63 Score=29.67 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 322 ERIDKEKAELERSISFLK 339 (434)
Q Consensus 322 ~eLe~~k~~Le~~i~~L~ 339 (434)
.+|-..+..|+....+|+
T Consensus 71 ~rl~~~kaqL~sV~~rlq 88 (218)
T 3frt_A 71 SKLYASKAHMNSVLMGMK 88 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334443333333
No 351
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.97 E-value=21 Score=29.31 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.8
Q ss_pred cceEEEecCCCCCCCCEeEEe
Q psy18020 11 IPVCIWLMDTHPDHAPICYVR 31 (434)
Q Consensus 11 iPi~iwl~~~yP~~~P~~~v~ 31 (434)
+=+.|.+|.+||..+|.+.|.
T Consensus 57 ~~L~v~~p~~YP~~~P~i~l~ 77 (128)
T 2ebm_A 57 TTLKFTYSEKYPDEAPLYEIF 77 (128)
T ss_dssp EEEEEECCSSTTTSCCEEEEE
T ss_pred EEEEEEeCCCCCCCCceEEEE
Confidence 347889999999999998775
No 352
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=36.79 E-value=2.6e+02 Score=25.94 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
..||..|..--+.|..-+..+-+-++.||+....|+..+..++.+++.+++
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555665655556666666667777777888888888877777766665543
No 353
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.66 E-value=1.7e+02 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
|+..+.+..-.+..|+..++.|++++.-+.+
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566666666655555533
No 354
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.65 E-value=73 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 328 KAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
...|+..+..++.++++|+..|..+
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 355
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=36.65 E-value=2e+02 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+.+.+...+..+..++..+..+..+..+|+.-..++
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 444455555555555555555555555555555554
No 356
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=36.52 E-value=1.2e+02 Score=24.76 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy18020 334 SISFLKEKETELDEILAVL 352 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l 352 (434)
.+..|+.++++|++-|+..
T Consensus 70 ~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 70 VAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 357
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=36.52 E-value=98 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
...+|++.+..+.++|+.+-+.-+.|+
T Consensus 9 v~~~l~ev~~iM~~NI~~vl~RGekLd 35 (63)
T 1n7s_A 9 TQAQVDEVVDIMRVNVDKVLERDQKLS 35 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333333344444444444444443333
No 358
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.43 E-value=1.8e+02 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEIEIL 303 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~ele~L 303 (434)
+|...| +.|+..+...+...+..+.+|
T Consensus 19 ~Lkrei-e~lk~ele~l~~E~q~~v~ql 45 (120)
T 3i00_A 19 RLYREI-SGLKAQLENMKTESQRVVLQL 45 (120)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 444444 366666655554444444443
No 359
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.31 E-value=1.2e+02 Score=23.20 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH
Q psy18020 342 ETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRG-VIDLEVYLKQVRSLSRKQFMFR 420 (434)
Q Consensus 342 ~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g-~I~ld~flK~vR~LaReQF~~R 420 (434)
.+++.++|+.+-..+.+++++ +|+...+.. .+|.+.|++. -+++-.|++..|.--=.+.+..
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~---------------lA~~~~~S~--~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSV---------------LSEKLDLSS--GYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHH---------------HHHHTTCCH--HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHH---------------HHHHHCcCH--HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC
Confidence 455666666553344566655 566666654 5789999876 7899999999996533333332
Q ss_pred --HHHHHHHHhcCCC
Q psy18020 421 --ALLFKCYKHISYA 433 (434)
Q Consensus 421 --a~~~Ki~~~~~l~ 433 (434)
..+..|+..+|..
T Consensus 67 ~~~si~~iA~~~Gf~ 81 (103)
T 3lsg_A 67 TELKNYEIAEQVGFE 81 (103)
T ss_dssp CCCCHHHHHHHTTCS
T ss_pred CCCCHHHHHHHhCCC
Confidence 3567777777753
No 360
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.30 E-value=1.1e+02 Score=28.32 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy18020 331 LERSISFLKEKETELDEILAV 351 (434)
Q Consensus 331 Le~~i~~L~~~~~eLe~~I~~ 351 (434)
+...+...+...+++.+|-.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 197 MVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444555555443
No 361
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.13 E-value=2.5e+02 Score=25.48 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 286 ~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
..++.+.+.++.+++|.+-..+.+++. +-++.-+.-|.+.|.+|+..-++|..+..+.++-+.
T Consensus 148 ~~~l~~~~~~l~~qlE~~v~~K~~~E~--~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 148 NERLLRDWNDVQGRFEKAVSAKEALET--DLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
No 362
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=36.03 E-value=86 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=23.3
Q ss_pred hcCCCCHHHHHHHHHHHH--HHHHH----------------HHHHHHHHHHhcCCC
Q psy18020 396 RRGVIDLEVYLKQVRSLS--RKQFM----------------FRALLFKCYKHISYA 433 (434)
Q Consensus 396 ~~g~I~ld~flK~vR~La--ReQF~----------------~Ra~~~Ki~~~~~l~ 433 (434)
..+..+++.|++.++.++ |.+|+ -++.+++++..+||.
T Consensus 74 ~~~~~~l~~~~~~i~~~~~~~~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls 129 (161)
T 2ou3_A 74 YEADEALEEVIARSPQVSMAQRDILLSAIWVSAADGELHEKEKAKIRKMATILGIK 129 (161)
T ss_dssp CCCCSCHHHHHTTCTTGGGCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Confidence 355667777777766444 22222 266777888888875
No 363
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=35.92 E-value=3.4e+02 Score=27.36 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhc----CC--CCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 335 ISFLKEKETELDEILAVLT----EK--TEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 335 i~~L~~~~~eLe~~I~~l~----~k--~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
....-.+.++++.||.+.+ .+ .+..-|. .....+.+++-++--+=.+.+++|..|.+-
T Consensus 201 ~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~d~--~~~e~LLkkh~~le~~l~~~~~~I~~L~~q 264 (450)
T 3r6n_A 201 YFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPL--QHLLEQIKELEKEREKILEYKRQVQNLVNK 264 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcccccCcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888887543 11 1221111 112246677777777777777777777653
No 364
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.42 E-value=69 Score=21.65 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy18020 327 EKAELERSISFLKEKETELDE 347 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~ 347 (434)
+-++.+..|..|+.+..+|++
T Consensus 17 EI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555544
No 365
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.38 E-value=99 Score=20.67 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy18020 318 ARMFERIDK 326 (434)
Q Consensus 318 ~~~~~eLe~ 326 (434)
++.+..|+.
T Consensus 30 kdliaylek 38 (49)
T 3he5_A 30 KDLIAYLEK 38 (49)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444433
No 366
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.34 E-value=73 Score=20.51 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLK 339 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~ 339 (434)
|++..++|-.+...|+..+.+|+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444444444444443
No 367
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=35.16 E-value=26 Score=33.73 Aligned_cols=64 Identities=19% Similarity=0.032 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh
Q psy18020 326 KEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR 396 (434)
Q Consensus 326 ~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~ 396 (434)
.....|...+.+++++...+.++|.... ++|+..+. ..|+++|...-++.--+||...+.++|-
T Consensus 238 ~~A~~L~~A~~g~GTde~~lirilv~Rs---~~~l~~I~----~~Y~~~yg~~L~~~I~~e~sGdy~~~Ll 301 (308)
T 2hyv_A 238 YFADRLYDSMKGKGTRDKVLIRIMVSRS---EVDMLKIR----SEFKRKYGKSLYYYIQQDTKGDYQKALL 301 (308)
T ss_dssp HHHHHHHHHHSSSSCCHHHHHHHHHHHT---TTTHHHHH----HHHHHHHSSCHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHhcC---HHHHHHHH----HHHHHHhCCcHHHHHHhhCChHHHHHHH
Confidence 3466677777777667777777776542 23333322 2788889888888888888888888874
No 368
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=35.07 E-value=1.6e+02 Score=22.99 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 311 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 311 ~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+.|.+.|.+-....+..+..++..+.....++++|.+-|.++
T Consensus 41 KeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 41 KEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455554444444445556666666666666666666655
No 369
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.01 E-value=1.3e+02 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 319 RMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 319 ~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
+.+++|...-.+-...|.+|+.+...|.+
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444433333333
No 370
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=34.91 E-value=2.3e+02 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 328 KAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
++.+++-+..-+..++.|+++++.+
T Consensus 42 k~a~e~Hl~eT~~qi~rLe~vf~~l 66 (171)
T 3ogh_B 42 RARIEQHLSETKNQIVQLETILDRN 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444443
No 371
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=34.87 E-value=2.2e+02 Score=24.51 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 328 KAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
...++.......+..+++-+.|..+.
T Consensus 62 ~~~f~~~a~eE~~Had~laeri~~lG 87 (182)
T 3fvb_A 62 AKKEREESIEEMHHADKLIDRIIFLE 87 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33444444444455666666666654
No 372
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=34.80 E-value=28 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy18020 301 EILKQTENELNQGKFKLARMFERI 324 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~eL 324 (434)
+.|++..+||...+.-|+....+|
T Consensus 9 kklravenelhynkslleevkdel 32 (38)
T 1c94_A 9 KKLRAVENELHYNKSLLEEVKDEL 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555444444433333
No 373
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.77 E-value=1.2e+02 Score=30.47 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q psy18020 342 ETELDEILAVL 352 (434)
Q Consensus 342 ~~eLe~~I~~l 352 (434)
..+|...+.++
T Consensus 47 rr~l~n~~~~l 57 (412)
T 3u06_A 47 RKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 374
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=34.50 E-value=2.5e+02 Score=24.97 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 307 ENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 307 q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
.++|..--..|=+-+..|+.++..|+..+..-+-++.+|..-|.++.+
T Consensus 60 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 344444444455556667777777777777777777777666666643
No 375
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=34.48 E-value=25 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 324 IDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 324 Le~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
|...+.+|+..|..|+++.+.|+..+...
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~ 33 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVE 33 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554433
No 376
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=34.39 E-value=2.7e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 318 ARMFERIDKEKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.++--.|+.+...+++......+-...||.|++
T Consensus 128 ~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~ 160 (214)
T 2cly_A 128 QRNNIAMALEVTYRERLHRVYREVKNRLDYHIS 160 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555554
No 377
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=34.29 E-value=2.4e+02 Score=27.85 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=12.6
Q ss_pred cCCCCHHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRSL 412 (434)
Q Consensus 397 ~g~I~ld~flK~vR~L 412 (434)
.|.|+++.|+.-+...
T Consensus 396 ~g~i~~~Ef~~~~~~~ 411 (484)
T 3nyv_A 396 NGYIEYSEFVTVAMDR 411 (484)
T ss_dssp TSEEEHHHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHhc
Confidence 5789999998876654
No 378
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=34.24 E-value=2.4e+02 Score=24.71 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC--CCCCccccccccchHHHHHHHh
Q psy18020 302 ILKQTENELNQGKFKLARMFERIDKEKAELER--SISFLKEKETELDEILAVLTEK--TEVDVDEAVTTTAPIYKQILNT 377 (434)
Q Consensus 302 ~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~--~i~~L~~~~~eLe~~I~~l~~k--~~~diDe~i~~~~~l~~Ql~~l 377 (434)
.+.....+|+...+.|...... -+..|+. .+.....+.+++..||.+-... +++.-| +...-.+.++.-.+
T Consensus 78 ~i~~~~~~l~~~W~~L~~~~~~---R~~~L~~a~~~~~F~~~~~e~~~Wl~ek~~~l~~~~g~d--l~~v~~l~~~h~~~ 152 (218)
T 3edu_A 78 TIAEWKDGLNEMWADLLELIDT---RMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLD--ASTAESFHRVHTAF 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------CCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCC--HHHHHHHHHHHHHH
Confidence 3555555666666555444332 2223322 3456667888899999865321 111111 11112344555555
Q ss_pred hHHHHhhhhHHHHHHH
Q psy18020 378 FTEEAATEDTIYYMGE 393 (434)
Q Consensus 378 ~Aed~AieDtiy~L~~ 393 (434)
-.+=.|+++.+..|.+
T Consensus 153 e~dL~~~~~~v~~l~~ 168 (218)
T 3edu_A 153 ERELHLLGVQVQQFQD 168 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666677777776654
No 379
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=34.13 E-value=73 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=16.1
Q ss_pred CccccccccchHHHHHHHhhHHHHhh
Q psy18020 359 DVDEAVTTTAPIYKQILNTFTEEAAT 384 (434)
Q Consensus 359 diDe~i~~~~~l~~Ql~~l~Aed~Ai 384 (434)
|.++++....+|.+-|=++-++=.||
T Consensus 91 NfE~al~t~~iL~KDLk~~e~kVKai 116 (119)
T 2jmh_A 91 NYEEAQTLSKILLKDLKETEQKVKDI 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666665555554
No 380
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=34.03 E-value=19 Score=29.84 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHh---cCCCCHHHHHHHHHHHHH
Q psy18020 385 EDTIYYMGEALR---RGVIDLEVYLKQVRSLSR 414 (434)
Q Consensus 385 eDtiy~L~~aL~---~g~I~ld~flK~vR~LaR 414 (434)
++.+..+=+.+. .|+|+++.|+.-+..|+.
T Consensus 54 ~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l~~ 86 (121)
T 4drw_A 54 PLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTI 86 (121)
T ss_dssp TTHHHHHHHHHCTTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 334444444443 589999999999998875
No 381
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.96 E-value=1.5e+02 Score=25.13 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=41.2
Q ss_pred HHHHHHHHhc--CCCCCCccccccccchHHHHHHHhh---HHHHhhhhHHHHHHHHHhcCCCCHHHHHHHH---------
Q psy18020 344 ELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTF---TEEAATEDTIYYMGEALRRGVIDLEVYLKQV--------- 409 (434)
Q Consensus 344 eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~---Aed~AieDtiy~L~~aL~~g~I~ld~flK~v--------- 409 (434)
++.+.....+ +.+-++.+|+. +++... ..|.-+++.|..++ =..|+|+++.|++.+
T Consensus 85 ~l~~aF~~fD~d~~G~I~~~el~--------~~l~~~g~~~~~~ei~~l~~~~d--d~dG~I~~~EF~~~m~k~~~~~~~ 154 (176)
T 2lhi_A 85 ELLEAFKVFDKNGDGLISAAELK--------HVLTSIGEKLTDAEVDDMLREVS--DGSGEINIQQFAALLSKGSSTGTR 154 (176)
T ss_dssp HHHHHHHHHCSSCSSSBCHHHHH--------HHHHTTTCCCCHHHHHHHHHHHH--TTSSCBCTTHHHHHHTCCSSCSSS
T ss_pred HHHHHHHHhCCCCCCcCcHHHHH--------HHHHHcCcccchHHHHHHHHhhc--CCCCeEeHHHHHHHHHhcCCccch
Confidence 3444444443 45667777742 222221 12333555555444 247899999999988
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 410 RSLSRKQFMFRALLFKCY 427 (434)
Q Consensus 410 R~LaReQF~~Ra~~~Ki~ 427 (434)
|...|..|..-+-+.++.
T Consensus 155 ~~~~r~~~~~i~k~~r~~ 172 (176)
T 2lhi_A 155 RKALRNKILAIAKVSRMF 172 (176)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666644444443
No 382
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.92 E-value=1.2e+02 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
|.+.+.+-+..-+.|+..+..|.++..+++
T Consensus 33 Ln~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 33 LSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444443
No 383
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.88 E-value=2.3e+02 Score=24.40 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 284 KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL------ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 284 kL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L------~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.|...+.+.+.++..++++|.-....+.....+. -+....++..+..++.....+.++.+.+..-++.+.
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555556555443322222211110 122234566777888888888888888876666553
No 384
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=33.86 E-value=2.5e+02 Score=24.93 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 308 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 308 ~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
++|..--..|=+-+..|+.++..|+..+..-+-++.+|..-|.++.
T Consensus 58 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 58 QELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444433344445555666666666655555555555555444443
No 385
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=33.76 E-value=3.6e+02 Score=26.60 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhH---H------HHhhhhHHHHHHHHH---hcCCCCHHHH
Q psy18020 340 EKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFT---E------EAATEDTIYYMGEAL---RRGVIDLEVY 405 (434)
Q Consensus 340 ~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~A---e------d~AieDtiy~L~~aL---~~g~I~ld~f 405 (434)
++.+++.++...++ +.+.++.+|+... .+.++...- . ....++.+..+=+.+ ..|.|+++.|
T Consensus 328 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~----l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef 403 (486)
T 3mwu_A 328 DETKQLTEIFRKLDTNNDGMLDRDELVRG----YHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEF 403 (486)
T ss_dssp HHHHHHHHHHHHHCTTCSSSBCHHHHHHH----HHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCceeeHHHHHHH----HHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 44566667766665 3566788884321 122221110 0 011133333333334 3689999999
Q ss_pred HHHH
Q psy18020 406 LKQV 409 (434)
Q Consensus 406 lK~v 409 (434)
+..+
T Consensus 404 ~~~~ 407 (486)
T 3mwu_A 404 IASA 407 (486)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 386
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=33.55 E-value=1.5e+02 Score=22.32 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
..|++...+=+..+.+|++.++.|+.++.+|.+.
T Consensus 28 ~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 28 QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444455566666666666666544
No 387
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=33.49 E-value=1.8e+02 Score=26.58 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
+.....+|-...+.|+..+..++.....+.+.+..+
T Consensus 190 v~~~ra~lGa~~nrle~~~~~l~~~~~~l~~~~S~i 225 (239)
T 3pwx_A 190 VLGAMTEIGGRHNNLDLMDGAHSENKLFVDKVSGDL 225 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 444555555555555555555655555665555543
No 388
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.45 E-value=58 Score=30.61 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 329 AELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 329 ~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
..|...++.+++++.+|++-|+.+
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444
No 389
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.39 E-value=2.8e+02 Score=25.24 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHH
Q psy18020 387 TIYYMGEALRRG--VIDLEVYLKQVRSL 412 (434)
Q Consensus 387 tiy~L~~aL~~g--~I~ld~flK~vR~L 412 (434)
.+.-|+|||... .-++..|++-|..+
T Consensus 118 VlDnlerAl~~~~~~~~~~~l~eGvemi 145 (213)
T 4ani_A 118 VLDNFERALKIETDNEQAKSILQGMEMV 145 (213)
T ss_dssp HHHHHHHHHSCCSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 455677777642 23456666666544
No 390
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=33.37 E-value=56 Score=24.85 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=12.3
Q ss_pred cCCCCHHHHHHHHHH
Q psy18020 397 RGVIDLEVYLKQVRS 411 (434)
Q Consensus 397 ~g~I~ld~flK~vR~ 411 (434)
.|.|+++.|++.++.
T Consensus 74 ~g~i~~~eF~~~~~~ 88 (105)
T 1wlz_A 74 KGRLKYPDFLSRFSS 88 (105)
T ss_dssp TSCBCHHHHHHHHC-
T ss_pred CCCCcHHHHHHHHhc
Confidence 589999999987763
No 391
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=33.34 E-value=3.1e+02 Score=25.74 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18020 325 DKEKAELERSISFLKEK 341 (434)
Q Consensus 325 e~~k~~Le~~i~~L~~~ 341 (434)
+..++++..+++.|++.
T Consensus 102 eelr~kl~~~veelk~~ 118 (273)
T 3s84_A 102 DELKAKIDQNVEELKGR 118 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444444444444444
No 392
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.18 E-value=95 Score=25.13 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~ 341 (434)
+..+++||.. |+.+.++|.+....|.+.+..|.++
T Consensus 8 ~~~Lk~El~~----L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 8 LEGLTQDLRQ----LQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555554 5556666666666666677766654
No 393
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=33.14 E-value=4.5e+02 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy18020 296 AQEEIEILKQTENEL 310 (434)
Q Consensus 296 ~~~ele~L~~~q~EL 310 (434)
++.+++.|.++|++.
T Consensus 21 ~e~~~k~Le~~Qe~f 35 (575)
T 1bf5_A 21 IEHEIKSLEDLQDEY 35 (575)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 394
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.00 E-value=68 Score=32.39 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
|+++++.|+.+++.|+.++..++++...+++-+..+
T Consensus 54 le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 54 LEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 395
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.89 E-value=28 Score=26.74 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=13.3
Q ss_pred hcCCCCHHHHHHHHHHH
Q psy18020 396 RRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 396 ~~g~I~ld~flK~vR~L 412 (434)
+.|.|+++.|++-++.+
T Consensus 57 ~dG~i~~~EF~~~~~~~ 73 (95)
T 1c07_A 57 DCGKLSKDQFALAFHLI 73 (95)
T ss_dssp CSSSEETTTHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 36899999998877643
No 396
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.81 E-value=96 Score=25.77 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 318 ARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 318 ~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.....-|+...+.|+..+..|+...+.|+..+....
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 113 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLALANACP 113 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666677777777777777777777776543
No 397
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=32.73 E-value=65 Score=26.94 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhH---HHHHHHHHhc
Q psy18020 343 TELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDT---IYYMGEALRR 397 (434)
Q Consensus 343 ~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDt---iy~L~~aL~~ 397 (434)
+.|++|++..+.-.+.||+- +.+.|.+|+ ++..||.+ |.+|.+.+++
T Consensus 43 ~lL~~Wv~s~~~P~~~DV~~-------l~~yL~~lV-eek~Lek~~~vlk~l~rlv~~ 92 (124)
T 3vu7_H 43 TLLREWITTISDPMEEDILQ-------VVKYCTDLI-EEKDLEKLDLVIKYMKRLMQQ 92 (124)
T ss_dssp HHHHHHHHHHCSCCHHHHHH-------HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHH-------HHHHHHHHh-hcccHHHHHHHHHHHHHHHhc
Confidence 46778887654444446666 778888877 78888765 4457777754
No 398
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=32.66 E-value=1.7e+02 Score=30.67 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCC-----CHHHHHHHHHH
Q psy18020 337 FLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVI-----DLEVYLKQVRS 411 (434)
Q Consensus 337 ~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I-----~ld~flK~vR~ 411 (434)
++..+++.|.+++.+.+++...|...+=.+-+.|-+-..++ ..+.-|.+-|.-|..|+..-+- .++.-|-....
T Consensus 739 Ev~dKIDNLNQAlsefKnGKngDFSkVeQAlsDLknSkkdL-srNQELtqKVdNLNQAVsEaK~tgdFSkVeQALadLKN 817 (876)
T 4dvy_P 739 EWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDV-IINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKN 817 (876)
T ss_dssp HHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccCchhhhhhhhHHHhhHHhh-hhhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Confidence 56778888888888887776777777666667777766665 5666888999999999875432 23444444445
Q ss_pred HHHHH
Q psy18020 412 LSRKQ 416 (434)
Q Consensus 412 LaReQ 416 (434)
++++|
T Consensus 818 ssKdq 822 (876)
T 4dvy_P 818 FSKEQ 822 (876)
T ss_dssp HHHHT
T ss_pred hhHHH
Confidence 55544
No 399
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.34 E-value=1.6e+02 Score=22.20 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 348 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~ 348 (434)
++.-...|+..+..--+.|..-...+=+-++.|++....|+..+..++.+.+.+++.
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qey 71 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEEY 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
No 400
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.34 E-value=57 Score=19.28 Aligned_cols=10 Identities=10% Similarity=0.096 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy18020 318 ARMFERIDKE 327 (434)
Q Consensus 318 ~~~~~eLe~~ 327 (434)
++++.+|+.+
T Consensus 6 kdevgelkge 15 (27)
T 3v86_A 6 KDEVGELKGE 15 (27)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhH
Confidence 3333333333
No 401
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.21 E-value=1.9e+02 Score=22.96 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18020 324 IDKEKAELERSISFLK 339 (434)
Q Consensus 324 Le~~k~~Le~~i~~L~ 339 (434)
|..++..|...+..|.
T Consensus 66 l~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333333333
No 402
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=32.17 E-value=2.4e+02 Score=24.20 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=2.0
Q ss_pred chHHHHHH
Q psy18020 368 APIYKQIL 375 (434)
Q Consensus 368 ~~l~~Ql~ 375 (434)
+|-|+|+.
T Consensus 99 ~P~Yak~~ 106 (158)
T 3tul_A 99 DPGYAQAE 106 (158)
T ss_dssp ----CHHH
T ss_pred CcchHHHH
Confidence 35555543
No 403
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=32.16 E-value=1e+02 Score=24.42 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHH
Q psy18020 327 EKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYM 391 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L 391 (434)
.-++.++.+..++..++++|+.|..+.......+.++..+-.-++.-.+.|-++=++|.+.+..+
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777778888877765433333333333222223333334444444444444433
No 404
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.15 E-value=2.3e+02 Score=29.14 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 325 DKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 325 e~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
+..+++++..-..+.+-.+++++.+..+-
T Consensus 114 ~~l~~~i~~le~~~~~~~~~~~~~l~~iP 142 (484)
T 3lss_A 114 KDLSDQVAGLAKEAQQLEEERDKLMLNVG 142 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333344444444444555543
No 405
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=32.12 E-value=1.1e+02 Score=23.22 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 327 EKAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 327 ~k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
.+..+.++|+.+-+.-+.|+...+
T Consensus 27 v~~iM~~NI~~vLeRGekLd~L~~ 50 (80)
T 1l4a_A 27 VVDIMRVNVDKVLERDSKISELDD 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444444444444444333
No 406
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.89 E-value=1.7e+02 Score=23.24 Aligned_cols=17 Identities=41% Similarity=0.329 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18020 335 ISFLKEKETELDEILAV 351 (434)
Q Consensus 335 i~~L~~~~~eLe~~I~~ 351 (434)
+..|+.++.+|++.|+.
T Consensus 54 V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 54 VSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 407
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=31.89 E-value=97 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 323 RIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
.+++++..++..|+.+++++..+.-.|
T Consensus 6 aikeeqaaieeeiqaikeeiaaikyli 32 (36)
T 1bb1_B 6 AIKEEQAAIEEEIQAIKEEIAAIKYLI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556665655555554433
No 408
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=31.87 E-value=2.2e+02 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 328 KAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
...++.......+..+++-+.|..+.
T Consensus 43 ~~~f~~~a~ee~~Had~l~e~i~~lG 68 (161)
T 3uoi_A 43 AAHTRAESFDEMRHAEEITDRILLLD 68 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444455566666666554
No 409
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.79 E-value=1.3e+02 Score=20.78 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy18020 303 LKQTENELNQGKFKLARMFERID 325 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe 325 (434)
+.++-+|....+.+|++-+..||
T Consensus 21 ~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 21 FARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544
No 410
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=31.77 E-value=3.1e+02 Score=25.21 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------------H
Q psy18020 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE-----------------R 333 (434)
Q Consensus 271 e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le-----------------~ 333 (434)
..+...|.+.|.+.|..-..+.....+...+....++.+|......++......+..+.+++ .
T Consensus 86 ~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~ 165 (301)
T 2efk_A 86 ELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKA 165 (301)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHH--HhhhhHHHHHHHHHhc
Q psy18020 334 SISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEE--AATEDTIYYMGEALRR 397 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed--~AieDtiy~L~~aL~~ 397 (434)
.++.++.+..+....+...++.=..-|+.+=......|...+..+.+. .-.++-|.+|...|..
T Consensus 166 ~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~lk~~l~~ 231 (301)
T 2efk_A 166 DVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGL 231 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.63 E-value=91 Score=20.06 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFL 338 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L 338 (434)
|++-+++|-.++..|+..+.+|
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHH
Confidence 3333444444444444444443
No 412
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=31.44 E-value=1.3e+02 Score=31.07 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=8.5
Q ss_pred CcCCCCceecccccccc
Q psy18020 43 NVDHTGKIYSPYLHTWT 59 (434)
Q Consensus 43 ~vd~~G~~~~pyL~~W~ 59 (434)
-||.||+-| |+..|+
T Consensus 94 Vvd~ng~ky--~~~~~~ 108 (526)
T 2wb7_A 94 VIDENNRTY--WTRVWN 108 (526)
T ss_dssp EEETTSCEE--EEEEEE
T ss_pred EEcCCCceE--EEEEec
Confidence 367777744 444554
No 413
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=31.37 E-value=3.1e+02 Score=25.21 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 362 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe 362 (434)
...-..+.....+....++.+...-.++...-+.+.....+...........+.......+++.+.+..+...-. ++.+
T Consensus 36 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (309)
T 2ch7_A 36 SKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAK-DVER 114 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred cccccchHHHHHHHhhHHHHhhhhHHHHHH-----HHHhcCCC--CHHHHHHHHHHHHHH
Q psy18020 363 AVTTTAPIYKQILNTFTEEAATEDTIYYMG-----EALRRGVI--DLEVYLKQVRSLSRK 415 (434)
Q Consensus 363 ~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~-----~aL~~g~I--~ld~flK~vR~LaRe 415 (434)
.+..-.-..+++-+.+..-..|-|-...|. +|-+.|.- .|.+-...||.||.+
T Consensus 115 ~~~~l~~~~~~i~~i~~~I~~Ia~qtnllALNAaIEAArAGe~GrGFaVVA~eIr~LA~~ 174 (309)
T 2ch7_A 115 VVESFQKGAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEE 174 (309)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
No 414
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=31.10 E-value=1.2e+02 Score=24.34 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy18020 305 QTENELNQGKFKLARMFERIDKEKA 329 (434)
Q Consensus 305 ~~q~EL~~~~~~L~~~~~eLe~~k~ 329 (434)
.+-..|+.|.-.|++.+...+++..
T Consensus 41 eIV~~LE~gel~LEesl~lyeeG~~ 65 (100)
T 1vp7_A 41 SLVSAMENGTLPLEQSLSAYRRGVE 65 (100)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3333344444344444444443333
No 415
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=31.07 E-value=76 Score=26.91 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHh----cCCCCHHHHHHHHHHHHHH
Q psy18020 371 YKQILNTFTEEAATEDTIYYMGEALR----RGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 371 ~~Ql~~l~Aed~AieDtiy~L~~aL~----~g~I~ld~flK~vR~LaRe 415 (434)
.+|.-.+.++-..+++++..|++.++ ...++++.|.+-+|.++-|
T Consensus 86 ~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~ 134 (146)
T 3hh0_A 86 HFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWE 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHc
Confidence 34444455555555555555555554 4588999999999988765
No 416
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=31.05 E-value=1.3e+02 Score=26.60 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=10.0
Q ss_pred cCCCCHHHHHH
Q psy18020 397 RGVIDLEVYLK 407 (434)
Q Consensus 397 ~g~I~ld~flK 407 (434)
.|.|+++.|+.
T Consensus 111 ~G~I~~~EF~~ 121 (226)
T 2lvv_A 111 VGEEDLVEFLE 121 (226)
T ss_dssp CCCCSCBCHHH
T ss_pred CCcCCHHHHHH
Confidence 68999999998
No 417
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.60 E-value=53 Score=26.10 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 287 RKMNEQKVQAQEEIEILKQTENELNQGKF-----KLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 287 ~~L~e~~~q~~~ele~L~~~q~EL~~~~~-----~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.||++.+..++.|++.+.+.-..++.... ++...+.+|+..+..+-..-..-..-.+.=++-|..|+
T Consensus 10 ~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr 81 (92)
T 3vp9_A 10 NKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLK 81 (92)
T ss_dssp -------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.53 E-value=98 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 323 RIDKEKAELERSISFLKEKETELD 346 (434)
Q Consensus 323 eLe~~k~~Le~~i~~L~~~~~eLe 346 (434)
+|++.+..+.++|+.+-+.-+.|+
T Consensus 17 ~l~evk~iM~~NI~~vL~RgekLd 40 (65)
T 1gl2_A 17 EVEGVKNIMTQNVERILARGENLD 40 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333344444444444444333333
No 419
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=30.41 E-value=75 Score=27.89 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=17.0
Q ss_pred CCCCccccccccchHHHHHHHhhHHHHhhhhHHHH
Q psy18020 356 TEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYY 390 (434)
Q Consensus 356 ~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~ 390 (434)
..+|++++-..=+-+.+|+-.+=--+..++|++..
T Consensus 112 ~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~ 146 (179)
T 2gd5_A 112 SLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFES 146 (179)
T ss_dssp SSTTSSSCCHHHHHHHHHHHHHTSCC---------
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44677776555566677776666666677777753
No 420
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.36 E-value=1.6e+02 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAEL 331 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~L 331 (434)
..|+..+..|+.+...|
T Consensus 40 ~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 40 EALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444443333333
No 421
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.09 E-value=59 Score=27.95 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 304 KQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 304 ~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
.+....|....+.|...++.|..+..++++.++.|+.+...
T Consensus 17 ~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 17 REASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332334444444445555555555555554443
No 422
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=30.02 E-value=1.8e+02 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHHHHH
Q psy18020 398 GVIDLEVYLKQVRSL 412 (434)
Q Consensus 398 g~I~ld~flK~vR~L 412 (434)
|.|+++.|+.-...+
T Consensus 117 G~I~~~Ef~~~l~~~ 131 (229)
T 3dd4_A 117 GAVSFEDFIKGLSIL 131 (229)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHHH
Confidence 444555544444433
No 423
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.90 E-value=2.7e+02 Score=25.15 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 333 RSISFLKEKETELDEILA 350 (434)
Q Consensus 333 ~~i~~L~~~~~eLe~~I~ 350 (434)
.....+.+..+++++||.
T Consensus 169 ~~k~~i~~~l~~~~~wl~ 186 (227)
T 1u00_A 169 AERQVIDDAAAHLSEVAQ 186 (227)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344556666777777775
No 424
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.80 E-value=1e+02 Score=20.99 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy18020 304 KQTENELNQGKFKLARMFERIDKEKAELER 333 (434)
Q Consensus 304 ~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~ 333 (434)
..+.+||..+.+.|++-+..|+..-+.|..
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555555544444433
No 425
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=29.74 E-value=3.3e+02 Score=25.22 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18020 402 LEVYLKQVRSLSRKQFM 418 (434)
Q Consensus 402 ld~flK~vR~LaReQF~ 418 (434)
-..|.+.+|.-.+.||-
T Consensus 138 Q~~y~e~~k~~i~Rq~~ 154 (267)
T 1dn1_B 138 QSDYRERCKGRIQRQLE 154 (267)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhh
Confidence 44566666655444553
No 426
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.73 E-value=1.6e+02 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy18020 306 TENELNQGKFKLARMFERIDKEKAELER 333 (434)
Q Consensus 306 ~q~EL~~~~~~L~~~~~eLe~~k~~Le~ 333 (434)
--..|......|..++..|+.+...|..
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444443
No 427
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=29.54 E-value=3.3e+02 Score=24.91 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy18020 328 KAELERSISFLKEKETELDEILAVLTEKTEVDVDE 362 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe 362 (434)
.+.++..+.-+++.+..+......|.+..=.++++
T Consensus 167 ~e~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~ 201 (235)
T 2odv_A 167 AGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQ 201 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 34555666666666666666666665555556666
No 428
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.47 E-value=4.7e+02 Score=26.63 Aligned_cols=16 Identities=6% Similarity=0.140 Sum_probs=8.2
Q ss_pred HHhhhhHHHHHHHHHh
Q psy18020 381 EAATEDTIYYMGEALR 396 (434)
Q Consensus 381 d~AieDtiy~L~~aL~ 396 (434)
+..++-.|..|...|+
T Consensus 158 ~~~~~~~i~~l~~~~~ 173 (461)
T 3ghg_B 158 NSNIPTNLRVLRSILE 173 (461)
T ss_dssp HTHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHH
Confidence 3445555555555443
No 429
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=29.35 E-value=2.4e+02 Score=23.30 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 328 KAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 328 k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
...++.......+..+++-+.|..+..
T Consensus 41 ~~~f~~~a~ee~~Had~l~eri~~lGg 67 (161)
T 3gvy_A 41 AHKSRKESIEEMHHADKLIQRIIFLGG 67 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 334444444445556666666666643
No 430
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=29.30 E-value=41 Score=29.08 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=28.9
Q ss_pred cCcccCCCccccCCCCc---cccccchhHHHHHHHhhhhcC
Q psy18020 112 SQNVDHTGKIYSPYLHT---WTAQNSKLEGLIKTLASAFSA 149 (434)
Q Consensus 112 ~~~v~~~g~~~~pyl~~---w~~~~s~l~~l~~~~~~~f~~ 149 (434)
..+|+.+|+|.+..|.. |++. .+|..+|..+..-|.+
T Consensus 86 HPnv~~~G~iCl~iL~~~~~W~p~-~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 86 HPNVYPSGTVCLSILEEDKDWRPA-ITIKQILLGIQELLNE 125 (161)
T ss_dssp STTBCTTSBBCCGGGCTTTTCCTT-CCHHHHHHHHHHHHHS
T ss_pred cCCCCCCCeEeehhcCCCCCcCCC-CcHHHHHHHHHHHHhC
Confidence 45788999999999975 8865 6787777777777765
No 431
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=29.29 E-value=90 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=10.9
Q ss_pred HHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 373 QILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 373 Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
||++|+++=..+-+-|..+.+.-
T Consensus 27 ~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 27 EILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Confidence 44444444444444444444443
No 432
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.24 E-value=23 Score=29.14 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=18.0
Q ss_pred ccceEEEecCCCCCCCCEeEEe
Q psy18020 10 HIPVCIWLMDTHPDHAPICYVR 31 (434)
Q Consensus 10 ~iPi~iwl~~~yP~~~P~~~v~ 31 (434)
.+=+.|.+|.+||..+|.+.|.
T Consensus 57 ~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 57 PLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEEEEECSSTTSSCCCCCCC
T ss_pred EEEEEEECCCCCCCCCCeEEEE
Confidence 3446788999999999998776
No 433
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=29.22 E-value=26 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
|++.+..|++.+..|++.|..|+.
T Consensus 5 leqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666665555543
No 434
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.15 E-value=1.8e+02 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKE 342 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~ 342 (434)
|+.....|..+...|...+..|..+.
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 435
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=29.10 E-value=47 Score=28.32 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=28.4
Q ss_pred cCcccCCCccccCCCC-ccccccchhHHHHHHHhhhhcC
Q psy18020 112 SQNVDHTGKIYSPYLH-TWTAQNSKLEGLIKTLASAFSA 149 (434)
Q Consensus 112 ~~~v~~~g~~~~pyl~-~w~~~~s~l~~l~~~~~~~f~~ 149 (434)
..+|+.+|+|.+..|. +|++. .+|..+|..+..-|.+
T Consensus 78 HPnv~~~G~iCl~iL~~~W~p~-~~i~~vl~~i~~ll~~ 115 (152)
T 2aak_A 78 HPNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCD 115 (152)
T ss_dssp CTTBCTTSBBCCGGGTTSCCTT-CCHHHHHHHHHHHHTS
T ss_pred cCCCCCCCEEechhhcCCCCCC-CcHHHHHHHHHHHHhC
Confidence 4568889999999997 47765 5687777777777765
No 436
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=29.00 E-value=3.9e+02 Score=25.62 Aligned_cols=43 Identities=2% Similarity=-0.109 Sum_probs=29.8
Q ss_pred CCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhc
Q psy18020 355 KTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRR 397 (434)
Q Consensus 355 k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~ 397 (434)
.+.....|++.+..-+.+.-.++..-...++.+...|..++..
T Consensus 184 ~G~~~~~d~~~a~~~~~~a~~~l~~a~~~~~~a~~~L~~l~G~ 226 (442)
T 1yc9_A 184 NGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQ 226 (442)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666666667777777777777777777777777777653
No 437
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=28.98 E-value=3.8e+02 Score=25.64 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy18020 398 GVIDLEVYLKQVRSLSRKQFMFR 420 (434)
Q Consensus 398 g~I~ld~flK~vR~LaReQF~~R 420 (434)
..+++..+++.+-...+..+..+
T Consensus 193 ~~~~l~~li~~~~~~~~~~~~~~ 215 (388)
T 1gkz_A 193 TRLSPKKIIEKWVDFARRLCEHK 215 (388)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 46788999988888777766543
No 438
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=28.93 E-value=60 Score=26.19 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=16.6
Q ss_pred CccccccccchHHHHHHHhhHHHHhhh
Q psy18020 359 DVDEAVTTTAPIYKQILNTFTEEAATE 385 (434)
Q Consensus 359 diDe~i~~~~~l~~Ql~~l~Aed~Aie 385 (434)
|.++++....+|.+-|=++-++=.||+
T Consensus 76 NfE~al~t~~iL~KDLk~~e~kVKai~ 102 (103)
T 3mq1_A 76 NLEMAKKSGDILERDLKKEEARVKKIE 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666666666666666655555543
No 439
>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*
Probab=28.79 E-value=98 Score=32.23 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHH-HHHHHHH--HHHH
Q psy18020 340 EKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVY-LKQVRSL--SRKQ 416 (434)
Q Consensus 340 ~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~f-lK~vR~L--aReQ 416 (434)
...++++.|...+.+=+..-.. . .+.+.--.+..++-|.|..|++..+++.++.+..+++.| +++++.+ -.+.
T Consensus 110 ~~~~cI~sWkk~~PDYei~lW~---D-~naflA~~LKk~i~e~a~~e~l~~~~e~~~~~~~~~n~~f~~~m~~i~~~Q~~ 185 (543)
T 2bvl_A 110 TAINYINQWKDVNSDYNVNVFY---D-SNAFLINTLKKTVVESAINDTLESFRENLNDPRFDYNKFFRKRMEIIYDKQKN 185 (543)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEE---C-TTCTTHHHHHHHHHHHHHHHHHHHHGGGGTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCEEEEEe---c-chhhHHHHHHHHHHHHHHHHHHHHhHhhccCcccchHHHHHHHHHHHHHHHHH
Confidence 3456788888877443222111 1 111222357778899999999999999999999998765 6677776 5555
Q ss_pred HHHH
Q psy18020 417 FMFR 420 (434)
Q Consensus 417 F~~R 420 (434)
|+.-
T Consensus 186 f~ny 189 (543)
T 2bvl_A 186 FINY 189 (543)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 440
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=28.74 E-value=4.2e+02 Score=25.81 Aligned_cols=6 Identities=17% Similarity=0.395 Sum_probs=2.9
Q ss_pred HHHHHH
Q psy18020 414 RKQFMF 419 (434)
Q Consensus 414 ReQF~~ 419 (434)
|++|-.
T Consensus 153 kK~Fek 158 (407)
T 4h8s_A 153 KDLFGL 158 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 441
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=28.61 E-value=1.5e+02 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 317 LARMFERIDKEKAELERSISFLKEKETEL 345 (434)
Q Consensus 317 L~~~~~eLe~~k~~Le~~i~~L~~~~~eL 345 (434)
++++.+-|...+..++..+..++++.+.|
T Consensus 20 ~~eik~~L~~QQ~g~~~Li~ivk~DleDL 48 (51)
T 3t98_A 20 LREIKQHLKQQQEGLSHLISIIKDDLEDI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34444444455555555555555555444
No 442
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.45 E-value=1.5e+02 Score=23.95 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 316 KLARMFERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 316 ~L~~~~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
.|+....++......|+..++.|+...++
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444
No 443
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=28.41 E-value=3.2e+02 Score=28.40 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18020 333 RSISFLKEKETELDEILA 350 (434)
Q Consensus 333 ~~i~~L~~~~~eLe~~I~ 350 (434)
...+.+.+..+++++|+.
T Consensus 560 ~~~~~~~~~~~~~~~~l~ 577 (605)
T 4b9q_A 560 DDKTAIESALTALETALK 577 (605)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444556666677777776
No 444
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.36 E-value=1.2e+02 Score=19.64 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy18020 312 QGKFKLARMFERIDK 326 (434)
Q Consensus 312 ~~~~~L~~~~~eLe~ 326 (434)
.+...|+.++.+|+.
T Consensus 15 ~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 15 SKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 333334444444443
No 445
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=28.34 E-value=4.7e+02 Score=26.34 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy18020 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK------EKAELERSISFLKEKETELDEILAVLTEKTEVD 359 (434)
Q Consensus 286 ~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~------~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~d 359 (434)
....-....+...++..+.....+.....+.++..+.+++. +.+.|++.+.+|......+.+.-..-...+.++
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~~~~~~~r~~~~~~~~~~~~ 260 (517)
T 4ad8_A 181 YAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNLHESSKHPTSLVPRGSGSA 260 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcc
Q ss_pred ccccccccchHHHHHHHhhHHHHh--hhhHHHHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 360 VDEAVTTTAPIYKQILNTFTEEAA--TEDTIYYMGEA------LRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS 431 (434)
Q Consensus 360 iDe~i~~~~~l~~Ql~~l~Aed~A--ieDtiy~L~~a------L~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~~ 431 (434)
.|.--...-..-...+....+.+. +++.+.+++++ +..|.+.++...+....+..+--.....+.+.|+..+
T Consensus 261 ~d~~~l~~i~~rl~~l~~l~~k~~~~~~~l~~~~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~R~~~~ 340 (517)
T 4ad8_A 261 ADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAAREREA 340 (517)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=28.24 E-value=2.3e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy18020 334 SISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 334 ~i~~L~~~~~eLe~~I~~l~~ 354 (434)
.++.|+.+...+..+|.+.+.
T Consensus 27 ~i~~Lk~eL~~m~a~L~da~~ 47 (115)
T 3qfl_A 27 NIEDLGKELESMNAALIKIGE 47 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555543
No 447
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.13 E-value=2.5e+02 Score=22.99 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=8.7
Q ss_pred HHHhhhhHHHHHHHHH
Q psy18020 380 EEAATEDTIYYMGEAL 395 (434)
Q Consensus 380 ed~AieDtiy~L~~aL 395 (434)
+=.+|+|=|.-|.+.|
T Consensus 70 ~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 70 VAVSIQAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555555
No 448
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.90 E-value=2.1e+02 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHh
Q psy18020 383 ATEDTIYYMGEALR 396 (434)
Q Consensus 383 AieDtiy~L~~aL~ 396 (434)
.++|.+..|.+.|.
T Consensus 117 sl~~l~~~L~~~l~ 130 (252)
T 3e98_A 117 SLEDVVSTVEDSLR 130 (252)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55666666666665
No 449
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=27.79 E-value=59 Score=25.73 Aligned_cols=60 Identities=8% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhh--HHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q psy18020 342 ETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTF--TEEAATEDTIYYMGEALRRGVIDLEVYLKQVR 410 (434)
Q Consensus 342 ~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~--Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR 410 (434)
.+++......++ +.+.++.+| +.+-|-.+- ..+..++..+..++. +.|.|+++.|++.++
T Consensus 75 ~~~~~~~F~~~D~d~~G~i~~~e-------l~~~l~~~g~~~~~~~~~~~~~~~d~--~dg~i~~~eF~~~~~ 138 (140)
T 1ggw_A 75 PEEFVKGFQVFDKDATGMIGVGE-------LRYVLTSLGEKLSNEEMDELLKGVPV--KDGMVNYHDFVQMIL 138 (140)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHH-------HHHHHHHHHSCSCHHHHHHHHHHTTC--SSCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEeHHH-------HHHHHHHcCCCCCHHHHHHHHHhccC--CCCcEeHHHHHHHHh
No 450
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=27.78 E-value=4e+02 Score=25.97 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM------FERIDKEKAELERSISFLKEKETE 344 (434)
Q Consensus 271 e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~------~~eLe~~k~~Le~~i~~L~~~~~e 344 (434)
..+...+...+.+-|..-+++.+...++..+.+...+.++.....+.... -...++....+...-.......-+
T Consensus 124 ~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~~~e~~~~l~~~Rk~f~~asld 203 (407)
T 4h8s_A 124 TELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQ 203 (407)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcCCCCCCccccc----cccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020 345 LDEILAVLTEKTEVDVDEAV----TTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 345 Le~~I~~l~~k~~~diDe~i----~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe 415 (434)
.-..|..+..+...++-+.+ -+..-.+++.++++.++ +++-+..|...++.=+..++...++.+.+.|+
T Consensus 204 yv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (407)
T 4h8s_A 204 YYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKR--MDSFLSSVADMVQSIQVELEAEAEKMRVSQQE 276 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 451
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=27.67 E-value=3.1e+02 Score=27.95 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----hcCCCCCCcccccc
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL----KEKETELDEILAV----LTEKTEVDVDEAVT 365 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L----~~~~~eLe~~I~~----l~~k~~~diDe~i~ 365 (434)
.++++..|.+.+.|.+.+...++-+++.+.|+...+.+...-+.+ .++-.++-+-|+. .+.|..-++||++.
T Consensus 292 ~eLsQrQeaen~~kk~f~~k~~~~~~ek~~Lk~asEii~s~gekise~~G~Kyk~lAkeIA~~lkn~KGKkIRnvdDAL~ 371 (511)
T 1rh1_A 292 NSLSQRQEAENNAKDDFRVKKEQENDEKTVLTKTSEVIISVGDKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMS 371 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCTTCCCCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceecCHHHHHH
Q ss_pred ccchHHHHHHH------hhHHHHhhhhHHHHHHH
Q psy18020 366 TTAPIYKQILN------TFTEEAATEDTIYYMGE 393 (434)
Q Consensus 366 ~~~~l~~Ql~~------l~Aed~AieDtiy~L~~ 393 (434)
.++++.+ ..+.-.||-.++.+++.
T Consensus 372 ----sfeKyk~nlnkK~nakDR~AI~nALesvd~ 401 (511)
T 1rh1_A 372 ----SINKLMANPSLKINATDKEAIVNAWKAFNA 401 (511)
T ss_dssp ----HHHHHTTCTTCCCCHHHHHHHHHHHHHCCH
T ss_pred ----HHHHHHhchhhccccccHHHHHHHHHhcCH
No 452
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=27.67 E-value=2.5e+02 Score=26.73 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------------HH
Q psy18020 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL-ERSISFLK---------------EK 341 (434)
Q Consensus 278 ~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~L-e~~i~~L~---------------~~ 341 (434)
+..+.++|....++.-...+..+-.|++....-......++.....|+..++.+ ......|. ++
T Consensus 44 ~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~~~~~y~y~~~~s~~lQE 123 (298)
T 3axj_B 44 KHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQE 123 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHhccCHHHHH
Q ss_pred HHHHHHHHHHhc---C------CCCCCcccc-------------------------------------ccccchHHHHHH
Q psy18020 342 ETELDEILAVLT---E------KTEVDVDEA-------------------------------------VTTTAPIYKQIL 375 (434)
Q Consensus 342 ~~eLe~~I~~l~---~------k~~~diDe~-------------------------------------i~~~~~l~~Ql~ 375 (434)
..++-.+..-+. + +.-+..+++ .+....-.-=|.
T Consensus 124 ~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f~v~~edYLlGL~ 203 (298)
T 3axj_B 124 FIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLS 203 (298)
T ss_dssp HHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC--------------------CCEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccCCCCCHHHHHHHhcccccccccccccccccccccccccccccccccCCCHHHHHHHHH
Q ss_pred HhhHH------------HHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 376 NTFTE------------EAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHI 430 (434)
Q Consensus 376 ~l~Ae------------d~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~~~ 430 (434)
+|+-| |...--.|.-+=+.|..|-+.|+ +|+++.|-|+.--.|-.++||-+.+
T Consensus 204 DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~Ln--lkn~~~LRKK~D~lk~svkKvE~v~ 268 (298)
T 3axj_B 204 DLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISLN--CQRARELWRKITTMKQSVLKAENVC 268 (298)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTCC--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHH
No 453
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.66 E-value=1.9e+02 Score=21.44 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy18020 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE 332 (434)
Q Consensus 271 e~~r~sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le 332 (434)
+.+-..-+..++.-.+.++.+........-+.++..+.|+.. +++.+..|+.+-+.|+
T Consensus 19 E~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~e----lrr~iq~L~~el~slk 76 (77)
T 3trt_A 19 ESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTE----YRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
No 454
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=27.64 E-value=2.3e+02 Score=24.54 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy18020 273 IKMSLKSAVEDKIRRKMNEQKVQAQEEIEI-LKQTENELNQGKFKLARMF-ERIDKEKAELERSISFLKEKET 343 (434)
Q Consensus 273 ~r~sl~sal~dkL~~~L~e~~~q~~~ele~-L~~~q~EL~~~~~~L~~~~-~eLe~~k~~Le~~i~~L~~~~~ 343 (434)
++..+...++ .|+.+|...+..+++.++. +..+++-|....+.++..+ ..+++.+..+...++.|+++..
T Consensus 89 l~~~l~~~~e-~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 89 TRARLSKELQ-AAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
No 455
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=27.54 E-value=1.2e+02 Score=22.73 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCC-CccccccccchHHHHHHHhhHH-----HHhhhhHHHHHHHHH---hcCCCCHHHHH
Q psy18020 337 FLKEKETELDEILAVLT-EKTEV-DVDEAVTTTAPIYKQILNTFTE-----EAATEDTIYYMGEAL---RRGVIDLEVYL 406 (434)
Q Consensus 337 ~L~~~~~eLe~~I~~l~-~k~~~-diDe~i~~~~~l~~Ql~~l~Ae-----d~AieDtiy~L~~aL---~~g~I~ld~fl 406 (434)
.|++..+++.++..... ..++- -|+. ..|..++.. + --++.+..+=+.+ +.|.|+++.|+
T Consensus 4 ~l~~~~~~l~~~F~~~D~~d~dG~~I~~---------~El~~~l~~~~~~~~-~~~~~i~~~~~~~D~d~dG~I~f~EF~ 73 (92)
T 2kax_A 4 PLEKALTTMVTTFHKYSGREGSKLTLSR---------KELKELIKKELCLGE-MKESSIDDLMKSLDKNSDQEIDFKEYS 73 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSSEEEH---------HHHHHHHHHHSCCTT-TCCTTHHHHHHHHTTTCSSEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCeeCH---------HHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCCCCCcCcHHHHH
Q ss_pred HHHHHHHH
Q psy18020 407 KQVRSLSR 414 (434)
Q Consensus 407 K~vR~LaR 414 (434)
+-++.+++
T Consensus 74 ~~~~~~~~ 81 (92)
T 2kax_A 74 VFLTMLCM 81 (92)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 456
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.50 E-value=2.1e+02 Score=21.96 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
.++++.-..=..++..+..-+..|++...+=+..+.+|+..++.|+.++.+|.+.=..+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
No 457
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=27.47 E-value=32 Score=24.10 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy18020 412 LSRKQFMFRALL 423 (434)
Q Consensus 412 LaReQF~~Ra~~ 423 (434)
++|+|||..+++
T Consensus 9 m~RRqfln~l~~ 20 (49)
T 1q90_R 9 MNKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
No 458
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.46 E-value=2e+02 Score=21.70 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 355 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k 355 (434)
+.....++=|.-.++-=...-..|+..++.|...++.+=+.+..|+.++..|+..|...+++
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 459
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.30 E-value=1.9e+02 Score=21.52 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
.+.|.++...++..-|.|+.+ |.-.+..|+..-.+-...-..|+.+..-.+..+..++
T Consensus 1 lIkQNKeL~~kl~~Kq~EI~r----LnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 1 AVQQNKELNFKLREKQNEIFE----LKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
No 460
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=27.28 E-value=3.7e+02 Score=24.71 Aligned_cols=133 Identities=6% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy18020 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVD 361 (434)
Q Consensus 282 ~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diD 361 (434)
.......+.+....+....+.+...-.++...-..+.....++......+...+..+....+++...+......-. ++.
T Consensus 7 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 85 (309)
T 2ch7_A 7 VQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEISSATKNIADSAQQAASFAD-QST 85 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_pred ccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020 362 EAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 362 e~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe 415 (434)
+.+....-..+++.+..-+-...-+.+...-+.|..+.-.+...+..++.+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~i~~~I~~Ia~q 139 (309)
T 2ch7_A 86 QLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGAEEITSFVETINAIAEQ 139 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.27 E-value=25 Score=27.67 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHH
Q psy18020 339 KEKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLK 407 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK 407 (434)
+++.+++.++-...+ +.+.++.+|+. ..=+-+.....+.-+++.+..++.- +.|.|+++.|++
T Consensus 32 ~~~~~el~~~F~~~D~d~~G~I~~~El~-----~~l~~lg~~~~~~ei~~l~~~~D~d-~dG~I~~~EF~~ 96 (100)
T 2lv7_A 32 EDELEEIREAFKVFDRDGNGFISKQELG-----TAMRSLGYMPNEVELEVIIQRLDMD-GDGQVDFEEFVT 96 (100)
T ss_dssp GGGHHHHHHHHHHTCSSCSSCBCHHHHH-----HHHHHHTCCCCTTTHHHHHHHHCSS-CSSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHH-----HHHHHhCCCCCHHHHHHHHHHHCCC-CCCeEeHHHHHH
No 462
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.15 E-value=1.6e+02 Score=23.23 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy18020 303 LKQTENELNQGKFKLARMFERI-----DKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 362 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eL-----e~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe 362 (434)
+...+++....-..|+..+.+. ....++|+..++.|++.+++|++.|...+.....+|++
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~ 72 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSG 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
No 463
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.10 E-value=45 Score=33.66 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 360 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~di 360 (434)
+.-++.+.....+++++...+...-..+....+..+..+.+++..+++++..-..+.+..+++++.+..+-|.-..+|
T Consensus 36 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~v 113 (425)
T 2dq3_A 36 DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSV 113 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
No 464
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=27.03 E-value=2.3e+02 Score=29.60 Aligned_cols=83 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILN 376 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~ 376 (434)
+++++.+.+...++.. -++...++.+.++.+|..+..++...+++...+..-
T Consensus 509 ~~~i~~~~~~~~~~~~----~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~------------------------ 560 (605)
T 2kho_A 509 EDEIQKMVRDAEANAE----ADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPAD------------------------ 560 (605)
T ss_dssp HHHHHHHHHHHHHSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH------------------------
T ss_pred HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH------------------------
Q ss_pred hhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18020 377 TFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 377 l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~L 412 (434)
+-..|++.|..+.++|... +.+.|-+...+|
T Consensus 561 ---~~~~i~~~~~~~~~~l~~~--~~~~~~~~~~~l 591 (605)
T 2kho_A 561 ---DKTAIESALTALETALKGE--DKAAIEAKMQEL 591 (605)
T ss_dssp ---HHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
No 465
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=26.95 E-value=3.6e+02 Score=24.44 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCC
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGV 399 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~ 399 (434)
++.+-.-...-=++..+.|++-..+++..+..++..+..-..+ +..+-+.+.+=.+++.+ |||.-.+.-|.
T Consensus 4 ~m~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~~~~~~c~l~~--------~~~~~~~~~~~~~~~~~-y~~~~~~aPgt 74 (205)
T 2fb5_A 4 AMHEWGLSEELKIQTKQMIEIAEKELSIMRNAIDKEDECILCK--------MEDIHHMLANVQTLAAT-YYIQAYLSPYT 74 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCGGGG--------HHHHHHHHHHHHHHHHH-HHHHHHHTTTC
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHhccCCceehHh--------hhhHHHHHHHHHHHHHH-HHHHHHhCCCC
Q ss_pred CCHHHHHHHHHHHHHH
Q psy18020 400 IDLEVYLKQVRSLSRK 415 (434)
Q Consensus 400 I~ld~flK~vR~LaRe 415 (434)
-.++..++-+..|+|.
T Consensus 75 ~~i~~l~~a~~~ls~~ 90 (205)
T 2fb5_A 75 ESSSFITTAIQHLSAR 90 (205)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc
No 466
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.87 E-value=1.2e+02 Score=18.77 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 320 MFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 320 ~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
++..|+++-..|+++|..|+=++..|..
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 467
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=26.79 E-value=1.2e+02 Score=25.37 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccc-cccchHHHHHHHhhHHHHhhhhHHHHHHHHH---hcCCCCHHHHHHHHHHH
Q psy18020 339 KEKETELDEILAVLT--EKTEVDVDEAV-TTTAPIYKQILNTFTEEAATEDTIYYMGEAL---RRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~--~k~~~diDe~i-~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL---~~g~I~ld~flK~vR~L 412 (434)
.++.+++.++...++ +.+.++.+|+. .....+.+.+--...++...++.+..|-+.+ ..|.|+++.|+.-++.+
T Consensus 16 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~ 95 (195)
T 1qv0_A 16 PRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQL 95 (195)
T ss_dssp HHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHHHH
Q ss_pred HHH
Q psy18020 413 SRK 415 (434)
Q Consensus 413 aRe 415 (434)
...
T Consensus 96 ~~~ 98 (195)
T 1qv0_A 96 ATS 98 (195)
T ss_dssp HHH
T ss_pred Hhh
No 468
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=26.76 E-value=2.1e+02 Score=21.78 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 283 DKIRRKMNEQKVQAQEEIEI----LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~----L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
.+|....+..+..++.-+.+ |.+.|+-.......|...+..|...-..+-..|+.+=.+.++++.
T Consensus 8 k~iA~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~leA 76 (77)
T 2bez_C 8 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc
No 469
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=26.75 E-value=2.2e+02 Score=21.95 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhh
Q psy18020 299 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTF 378 (434)
Q Consensus 299 ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~ 378 (434)
+|+.|+..-..|.....+|..++..++..-+.++..-+.=-.....++.-+..++ -|+|+ ++=.-.+|-
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lr----kdvD~-------a~l~r~dLE 69 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR----QDVDN-------ASLARLDLE 69 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTHHH-------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHH-------HHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHH
Q psy18020 379 TEEAATEDTIYYMGE 393 (434)
Q Consensus 379 Aed~AieDtiy~L~~ 393 (434)
++-.++.|=|.+|.+
T Consensus 70 ~kvesL~eEl~fLkk 84 (86)
T 3swk_A 70 RKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
No 470
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=26.73 E-value=2.1e+02 Score=21.67 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy18020 299 EIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 355 (434)
Q Consensus 299 ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k 355 (434)
+++.=.+.+.-.+.-...|.++.+-|..-...|+..+..|+++...+|..|+-++.+
T Consensus 11 ~iq~DW~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAk 67 (73)
T 3pp5_A 11 NIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEAT 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=26.63 E-value=34 Score=29.17 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=0.0
Q ss_pred eEEEecCCCCCCCCEeEEe
Q psy18020 13 VCIWLMDTHPDHAPICYVR 31 (434)
Q Consensus 13 i~iwl~~~yP~~~P~~~v~ 31 (434)
+.|.+|.+||..+|.+.|+
T Consensus 77 L~v~lP~~YP~~~P~i~l~ 95 (152)
T 2dax_A 77 LACILPFKYPAVLPEITVR 95 (152)
T ss_dssp EEEEECSSTTSSCCCCEEE
T ss_pred EEEECCCCCCCCCCeEEEE
No 472
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.57 E-value=1.2e+02 Score=29.17 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy18020 308 NELNQGKFKLARMFERIDKEKAELERSISFLKEK---ETELDEI 348 (434)
Q Consensus 308 ~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~---~~eLe~~ 348 (434)
.++...-.++...+.+|+....+|+.++..|++. .++|..|
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
No 473
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=26.54 E-value=1.2e+02 Score=24.43 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy18020 339 KEKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALR---RGVIDLEVYLKQVRSLS 413 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~---~g~I~ld~flK~vR~La 413 (434)
....+++.++...++ +.+.++.+| .++++..+..+..-++.+..+=+.+. .|.|+++.|++-++.++
T Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~e--------l~~~l~~~g~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~~~~~~ 107 (135)
T 3h4s_E 36 EEFVSELCKGFSLLADPERHLITAES--------LRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLS 107 (135)
T ss_dssp HHHHHHHHHHHHHHSBTTTTBBCHHH--------HHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCCcCCHHH--------HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC
Q ss_pred HH------HHHHHHHHHHHHHh
Q psy18020 414 RK------QFMFRALLFKCYKH 429 (434)
Q Consensus 414 Re------QF~~Ra~~~Ki~~~ 429 (434)
.+ +++.++..+-+...
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~ 129 (135)
T 3h4s_E 108 PEMMEDAETWLEKALTQELCNH 129 (135)
T ss_dssp HHHHHHGGGGTHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhccc
No 474
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=26.50 E-value=1.1e+02 Score=24.23 Aligned_cols=72 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHH---HHHHHhcC-----CCCHHHHHHHH
Q psy18020 338 LKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYY---MGEALRRG-----VIDLEVYLKQV 409 (434)
Q Consensus 338 L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~---L~~aL~~g-----~I~ld~flK~v 409 (434)
|.+-.+.|++|++.-+.-.+.||+- +.+.|-+++ ++..||.+--. |.+.+++. .-.++.-++.|
T Consensus 11 l~dvr~~l~~Wv~~~~~P~~~DV~~-------l~~yL~~lv-~~~~lek~~~vlk~l~rlv~~~~~~~W~~A~~~I~~~V 82 (97)
T 4fjo_A 11 FSDVKTLLKEWITTISDPMEEDILQ-------VVRYCTDLI-EEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNV 82 (97)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHH-------HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHHHh-hccCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy18020 410 RSLSRKQF 417 (434)
Q Consensus 410 R~LaReQF 417 (434)
-...++-|
T Consensus 83 Q~~v~~~y 90 (97)
T 4fjo_A 83 QVVLQQTY 90 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
No 475
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=26.49 E-value=4.6e+02 Score=25.63 Aligned_cols=125 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHH
Q psy18020 293 KVQAQEEIEILKQTENELNQGKFKLARMFERIDKE-KAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIY 371 (434)
Q Consensus 293 ~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~-k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~ 371 (434)
....+..++.++..-.+|..+-..|.....++..- ...+.+....|......+-..++.+...+...+..++....-.+
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~ 262 (386)
T 4akv_A 183 LQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTY 262 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHH-----HHhhhhHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy18020 372 KQILNTFTE-----EAATEDTIYYMGEALR--RGVIDLEVYLKQVRSLSRKQFMFRAL 422 (434)
Q Consensus 372 ~Ql~~l~Ae-----d~AieDtiy~L~~aL~--~g~I~ld~flK~vR~LaReQF~~Ra~ 422 (434)
..+=++.++ +..+.|+|.++.+.|. ++ +|=++.+.|+|..=..|++
T Consensus 263 e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kd-----ll~~R~~aL~k~~ea~kl~ 315 (386)
T 4akv_A 263 EAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPD-----IIHLQKGAFAKVKESQRMS 315 (386)
T ss_dssp HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
No 476
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=26.46 E-value=1.3e+02 Score=24.26 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
..+++.+.+.-......+.....|.++..||.+.+......+....++ .+.++++ |-|.+.+|-.+
T Consensus 24 ~elq~~i~~~~~~~~~~~~~~~kL~eE~gEl~e~i~~~~~~~~~~~~~------------~~~l~eE--LgDvL~~l~~L 89 (114)
T 2q5z_A 24 SELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDEL------------KGSVAEE--LYDVLYYVCAL 89 (114)
T ss_dssp HHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCSCCCGGGC------------TTCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhccccccccch------------HHHHHHH--HHHHHHHHHHH
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHH
Q psy18020 395 LRRGVIDLEVYLKQVRSLSRKQF 417 (434)
Q Consensus 395 L~~g~I~ld~flK~vR~LaReQF 417 (434)
-+.=.||++.-|+..-..-++-|
T Consensus 90 A~~lgiDle~al~~k~~K~~~Ry 112 (114)
T 2q5z_A 90 ANIHGVNLEKTRELKEVLNKVKY 112 (114)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHCcCHHHHHHHHHHHHHHhC
No 477
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.41 E-value=2e+02 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18020 314 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLT 353 (434)
Q Consensus 314 ~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~ 353 (434)
+++++++...|+..+.++.+-+..+..-..+|...|..++
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE 45 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVE 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=26.31 E-value=1.8e+02 Score=23.34 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKE-----KAELERSISFLKEKETELDEILA 350 (434)
Q Consensus 276 sl~sal~dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~-----k~~Le~~i~~L~~~~~eLe~~I~ 350 (434)
++.+.+.++|..-+.+.......--+.+..++.||.. ++..+...+.. ...++.=+..+++-.=++|.+|+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~----m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELES----MNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q psy18020 351 VL 352 (434)
Q Consensus 351 ~l 352 (434)
+.
T Consensus 77 ~f 78 (115)
T 3qfl_A 77 KF 78 (115)
T ss_dssp HH
T ss_pred HH
No 479
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.31 E-value=1.4e+02 Score=27.74 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 300 IEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349 (434)
Q Consensus 300 le~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I 349 (434)
++.|.+--++++..-..|++-+.++.+..+..+..+..+++...+|+..+
T Consensus 1 le~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 1 MASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=26.27 E-value=1.9e+02 Score=23.93 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHhc--CCCCCCccccccccc
Q psy18020 301 EILKQTENELNQGKFKLARMFERIDKE-------KAELERSISFL---KEKETELDEILAVLT--EKTEVDVDEAVTTTA 368 (434)
Q Consensus 301 e~L~~~q~EL~~~~~~L~~~~~eLe~~-------k~~Le~~i~~L---~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~ 368 (434)
+.+..++....-..+.|+......... .+++...+..+ .....++++.....+ +.+.++.+|
T Consensus 11 ~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~e------ 84 (190)
T 1g8i_A 11 EVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSE------ 84 (190)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHH------
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEeHHH------
Q ss_pred hHHHHHHHhhHHHHhhhhHHHHHHHHHh------cCCCCHHHHHHHHHHH
Q psy18020 369 PIYKQILNTFTEEAATEDTIYYMGEALR------RGVIDLEVYLKQVRSL 412 (434)
Q Consensus 369 ~l~~Ql~~l~Aed~AieDtiy~L~~aL~------~g~I~ld~flK~vR~L 412 (434)
+-..............+.++++ .|.|+.+.|.+-++.+
T Consensus 85 ------f~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~ 128 (190)
T 1g8i_A 85 ------FIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAI 128 (190)
T ss_dssp ------HHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred ------HHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHHHHHHHHH
No 481
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=26.22 E-value=28 Score=30.12 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHHHHhhhhH-HHHHHHHHhcCCCCHHHHHHHH
Q psy18020 369 PIYKQILNTFTEEAATEDT-IYYMGEALRRGVIDLEVYLKQV 409 (434)
Q Consensus 369 ~l~~Ql~~l~Aed~AieDt-iy~L~~aL~~g~I~ld~flK~v 409 (434)
.+|+|+++- +..++-- .-.|.-.|++|.|++-.|+|.+
T Consensus 21 AaYrQVfgn---~~~~~seR~~~lESqLrnG~ItVReFVR~L 59 (148)
T 3nph_B 21 AVYRQVLGN---DHLMSQERLTSAESLLRGREISVRDFVRAV 59 (148)
T ss_dssp HHHHHHHSC---SCCCTTTSCHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHhCC---cccccccccccHHHHHhcCCccHHHHHHHH
No 482
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.10 E-value=1.3e+02 Score=19.34 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKE 340 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~ 340 (434)
.+|++-+++|-.++..|+..+.+|++
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
No 483
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=26.05 E-value=2.6e+02 Score=24.20 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCccccccccchHHHHH
Q psy18020 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV-LTEKTEVDVDEAVTTTAPIYKQI 374 (434)
Q Consensus 296 ~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~-l~~k~~~diDe~i~~~~~l~~Ql 374 (434)
.-..+..+......+...-.++.+.... ...++.|++-+..-+..++.|++.++. +..+-..--.+++..--.-.+-+
T Consensus 10 f~~~L~D~y~aE~q~~~al~~~~~~a~~-p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~gli~e~~~~ 88 (166)
T 2gs4_A 10 FIHLLSDTYSAEKQLTRALAKLARATSN-EKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEV 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Q ss_pred HHhhHHHHhhhhHHHHHHHHHhc
Q psy18020 375 LNTFTEEAATEDTIYYMGEALRR 397 (434)
Q Consensus 375 ~~l~Aed~AieDtiy~L~~aL~~ 397 (434)
.+-+..|..++-+|-.-..++.+
T Consensus 89 ~~~~~~~~vlda~li~aaq~~Eh 111 (166)
T 2gs4_A 89 IESTEKNEVRDAALIAAAQKVEH 111 (166)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHH
No 484
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.99 E-value=2.7e+02 Score=22.76 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAV 351 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~ 351 (434)
++|...+.+...++..+.+.-..+...+....+.=+..+..|......-+..+..|+.....+...+..
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=25.96 E-value=33 Score=33.18 Aligned_cols=110 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 279 SAVEDKIRRKMNEQKVQAQEEIEI------LKQTENELNQGKFK-----LARMFERIDKEKAELERSISFLKEKETELDE 347 (434)
Q Consensus 279 sal~dkL~~~L~e~~~q~~~ele~------L~~~q~EL~~~~~~-----L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~ 347 (434)
..+...|..|...++..+..+.+. ...++.|.....++ ++-....-......|...+.+++++...|.+
T Consensus 191 ~~li~Il~tRs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Llalv~~~~~~~~~~A~~L~~a~~g~Gtd~~~Lir 270 (320)
T 1yii_A 191 ETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIR 270 (320)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHCCTTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHSSSSCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHHHhccCCcHHHHHHHHHhhccCCCcHHHHHH
Q ss_pred HHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHH
Q psy18020 348 ILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEAL 395 (434)
Q Consensus 348 ~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL 395 (434)
+|......+-.+|.+ .|+++|...-++.--+||-..+.++|
T Consensus 271 ilv~Rse~dl~~Ik~-------~y~~~yg~~L~~~I~~etsGdy~~~L 311 (320)
T 1yii_A 271 VMVSRSEIDLLDIRH-------EFRKNFAKSLYQMIQKDTSGDYRKAL 311 (320)
T ss_dssp HHHHHTTTTHHHHHH-------HHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred HHHhcCHHHHHHHHH-------HHHHhcCCCHHHHHhhcCChHHHHHH
No 486
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=25.93 E-value=1.7e+02 Score=22.91 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHH
Q psy18020 315 FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEA 394 (434)
Q Consensus 315 ~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~a 394 (434)
..+++.+.+....+..-+.....|.++..||.+.+......+...-++ .+.++++ |-|.+.+|-..
T Consensus 4 ~elQ~~v~~~~~~~~~~~~~~~kL~eE~gEl~e~~~~~~~~~~~~~~~------------~~~i~eE--LgDvL~~l~~l 69 (100)
T 2q73_A 4 SELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDEL------------KGSVAEE--LYDVLYYVCAL 69 (100)
T ss_dssp HHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHTTCCSCCCGGGC------------TTCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHhhcccccccchh------------HHHHHHH--HHHHHHHHHHH
Q ss_pred HhcCCCCHHHHHHH
Q psy18020 395 LRRGVIDLEVYLKQ 408 (434)
Q Consensus 395 L~~g~I~ld~flK~ 408 (434)
-+.=.||++.-|+.
T Consensus 70 A~~lgiDle~al~~ 83 (100)
T 2q73_A 70 ANIHGVNLEKTHEL 83 (100)
T ss_dssp HHHTTCCHHHHHHH
T ss_pred HHHHCcCHHHHHHH
No 487
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=25.82 E-value=28 Score=28.91 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=0.0
Q ss_pred eEEEecCCCCCCCCEeEE
Q psy18020 13 VCIWLMDTHPDHAPICYV 30 (434)
Q Consensus 13 i~iwl~~~yP~~~P~~~v 30 (434)
+.|.+|.+||..+|.++|
T Consensus 67 L~v~~p~~YP~~~P~i~l 84 (137)
T 1ukx_A 67 LRVKCPPTYPDVVPEIDL 84 (137)
T ss_dssp EEECCCTTTTSSCCCCEE
T ss_pred EEEECCCCCCCCCCcEEE
No 488
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=25.74 E-value=35 Score=24.21 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy18020 339 KEKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK 415 (434)
Q Consensus 339 ~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaRe 415 (434)
.++.+++.++....+ +.+.++.+++. ..-.-+.....+..++..+..++.- +.|.|+++.|++.++..-++
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~-----~~l~~~g~~~~~~~~~~~~~~~d~~-~~g~i~~~eF~~~~~~~~~~ 75 (77)
T 2joj_A 3 EEQKQEIKEAFDLFDTNKTGSIDYHELK-----VAMRALGFDVKKPEILELMNEYDRE-GNGYIGFDDFLDIMTEKIKN 75 (77)
T ss_dssp HHHHHHHHHHHHHHCCSSSSEEEHHHHH-----HHHHHHTCCCHHHHHHHHHHHHCCS-SSSEEEHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcHHHHH-----HHHHHhCCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHHhcc
No 489
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=25.59 E-value=1.4e+02 Score=24.71 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHH
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQ 373 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Q 373 (434)
...++.+.+|++.+..++. |++|+++ -.-|...+..+..-...|++....+ +...
T Consensus 7 ~~kk~ll~RLkRIeGQvrG----I~rMIEe----dr~C~DIL~QlaAVrsAL~~~~~~I-----------------Le~H 61 (119)
T 2hh7_A 7 AKKRAALNRLKTVRGHLDG----IVRMLES----DAYCVDVMKQISAVQSSLERANRVM-----------------LHNH 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH
Q ss_pred HHHhhHH-------HHhhhhHHHHHHHHHh
Q psy18020 374 ILNTFTE-------EAATEDTIYYMGEALR 396 (434)
Q Consensus 374 l~~l~Ae-------d~AieDtiy~L~~aL~ 396 (434)
|-+|+++ +..|++.+..| +.++
T Consensus 62 L~~Cv~~a~~~~~~~e~ieEl~~~i-k~~k 90 (119)
T 2hh7_A 62 LETCFSTAVLDGHGQAAIEELIDAV-KFTP 90 (119)
T ss_dssp HHTTTTTCSSTTHHHHHHHHHHHTT-CC--
T ss_pred HHHHHHhHhccCchHHHHHHHHHHH-HHHH
No 490
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=25.58 E-value=2.1e+02 Score=21.23 Aligned_cols=70 Identities=6% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18020 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFK-LARMFERIDKEKAELERSISFLKEKETELDEILAVL 352 (434)
Q Consensus 283 dkL~~~L~e~~~q~~~ele~L~~~q~EL~~~~~~-L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l 352 (434)
..|...++....+++...+..+++-..+.+.-.. +......++...+.-+..+..+.+..++++..+..+
T Consensus 40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~l 110 (114)
T 3zcc_A 40 GILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQF 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 491
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.58 E-value=2.5e+02 Score=22.11 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy18020 287 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTE 354 (434)
Q Consensus 287 ~~L~e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~ 354 (434)
.+|+..+.+.+.-.-+...-..-+... ..|+.++..|..+.+.|..+...+..+.+.+..-.+.|.+
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~-~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~~ 90 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQK-HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLAN 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 492
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=25.57 E-value=5.3e+02 Score=25.97 Aligned_cols=129 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCCCCCcccccccc
Q psy18020 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE------KETELDEILAVLTEKTEVDVDEAVTTT 367 (434)
Q Consensus 294 ~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~------~~~eLe~~I~~l~~k~~~diDe~i~~~ 367 (434)
......++.+.+...++.. +.....+.....+.++..+..+.. +.++|++.+..+++.+..-..+ ..-
T Consensus 179 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~~~~~~~r~--~~~ 252 (517)
T 4ad8_A 179 QAYAAAHAAWREAVSRLER----LQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNLHESSKHP--TSL 252 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHh--hhh
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 368 APIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428 (434)
Q Consensus 368 ~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~LaReQF~~Ra~~~Ki~~ 428 (434)
+.....+----.+-..+++-+..+.+..++-..+++..++....+..+--.....-.++..
T Consensus 253 ~~~~~~~~~d~~~l~~i~~rl~~l~~l~~k~~~~~~~l~~~~~~~~~~l~~l~~~~~~l~~ 313 (517)
T 4ad8_A 253 VPRGSGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDERDAGS 313 (517)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccHHHHHH
No 493
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=25.56 E-value=2.9e+02 Score=22.89 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccch
Q psy18020 291 EQKVQAQEEIEILKQTENELNQGKFK-LARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAP 369 (434)
Q Consensus 291 e~~~q~~~ele~L~~~q~EL~~~~~~-L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~ 369 (434)
+....++++++.+.++..-|+..+.. +..-+..|+....+.+..+..|+.-..+-.+++..+ -+.+...
T Consensus 7 ~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~l----------g~~~~~~ 76 (157)
T 2fup_A 7 TLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREA----------GVSLDRE 76 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCCChH
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHhc
Q psy18020 370 IYKQILNTFTEEAATEDTIYYMGEALRR 397 (434)
Q Consensus 370 l~~Ql~~l~Aed~AieDtiy~L~~aL~~ 397 (434)
-...+...-.++..+.+...-|...+.+
T Consensus 77 ~~~~l~~~~~~~~~l~~~~~~l~~l~~~ 104 (157)
T 2fup_A 77 GLARYARERADGAELLARGDELGELLER 104 (157)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHH
No 494
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=25.56 E-value=74 Score=26.69 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHhcCCCCCCccccccccchHHHHHHHhh--HHHHhhhhHHHHHHHHHhcCCCCHHH------HHHHHHHHH-----H
Q psy18020 348 ILAVLTEKTEVDVDEAVTTTAPIYKQILNTF--TEEAATEDTIYYMGEALRRGVIDLEV------YLKQVRSLS-----R 414 (434)
Q Consensus 348 ~I~~l~~k~~~diDe~i~~~~~l~~Ql~~l~--Aed~AieDtiy~L~~aL~~g~I~ld~------flK~vR~La-----R 414 (434)
.+......+.++-+|.- ...+++.-. ..+..-+..+..+.++. +..+++. |++.++.++ |
T Consensus 38 ~~~vA~ADG~v~~~E~~-----~i~~~l~~~~~l~~~~~~~l~~~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 110 (153)
T 2jxu_A 38 CARIAVASDGVSSEEKQ-----KMIGFLRSSEELKVFDTAEVIEFFNKLV--TSFDFDLEIGKGETMKYILALKDQPEAA 110 (153)
T ss_dssp HHHHHCCSSSCCSHHHH-----HHHHHHHHSGGGSSCCHHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHhcCCCCHHHHH-----HHHHHHHhCcccCchhHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHHHHhCCHHHH
Q ss_pred HHHHH----------------HHHHHHHHHhcCCCC
Q psy18020 415 KQFMF----------------RALLFKCYKHISYAR 434 (434)
Q Consensus 415 eQF~~----------------Ra~~~Ki~~~~~l~~ 434 (434)
++|+. ++.+++|+..+||.+
T Consensus 111 ~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~ 146 (153)
T 2jxu_A 111 QLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDP 146 (153)
T ss_dssp HHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCH
No 495
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.52 E-value=1.6e+02 Score=22.29 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18020 292 QKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFL 338 (434)
Q Consensus 292 ~~~q~~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L 338 (434)
....+...++=+..++.+... ++.++.+|+.+...|+..+..|
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~----l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHT----HQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
No 496
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=25.51 E-value=4.2e+02 Score=24.85 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy18020 291 EQKVQAQEEIEILKQTENELNQGKFKLARMF--------ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 362 (434)
Q Consensus 291 e~~~q~~~ele~L~~~q~EL~~~~~~L~~~~--------~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe 362 (434)
+.++.+...++.|++..+.+.....++..-+ ..|...+.+|...+...++.+=.+-+-+.+ .-++
T Consensus 80 e~r~~L~q~~~~lf~s~~~~yan~~~~~SYlk~ed~~~~akL~~~~~~l~~em~e~k~~ifd~lsp~ae-------qAE~ 152 (264)
T 3rh3_A 80 EVRQNLKQNYAGLFNVRTQFYDNFNKFLAYKKSKDTAKTAQLLDENYKLSVELSEYKQVIFDILSPLTE-------QAES 152 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHH
Q ss_pred cccccchHHHHHHHhhHHHHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy18020 363 AVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 363 ~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~aL~~g~I~ld~flK~vR~L 412 (434)
++....||=+||+..-.--..++++|..+.+-..=..--+|.-++++|..
T Consensus 153 vlL~DhPLKeqIla~kkm~~~~~~~~~l~~rq~~~D~~rld~~~~el~~q 202 (264)
T 3rh3_A 153 ELLADEPLKDQIMAMRKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKE 202 (264)
T ss_dssp HHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
No 497
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.46 E-value=81 Score=28.99 Aligned_cols=60 Identities=12% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-Ccccccc
Q psy18020 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEV-DVDEAVT 365 (434)
Q Consensus 303 L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~-diDe~i~ 365 (434)
|.+.+.-|... .+...+-|++..+.|++.+..|+...+.|+..++.++..... +..++.+
T Consensus 66 l~~i~~~~~~~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~v~I 126 (278)
T 1r8e_A 66 LEEMKKAQDLE---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFV 126 (278)
T ss_dssp HHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTCCEE
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEE
No 498
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=25.45 E-value=4.8e+02 Score=25.49 Aligned_cols=129 Identities=6% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------HHHHHHHHHhH----------------HHHHHHHHHH--
Q psy18020 274 KMSLKSAVEDKIRRKM--NEQKVQAQEEIEI----------LKQTENELNQG----------------KFKLARMFER-- 323 (434)
Q Consensus 274 r~sl~sal~dkL~~~L--~e~~~q~~~ele~----------L~~~q~EL~~~----------------~~~L~~~~~e-- 323 (434)
...++.++...+...+ .++...+++.++. ..++..-|... .+.++++...
T Consensus 313 ~~kl~qa~l~~i~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D 392 (484)
T 3nyv_A 313 TQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVD 392 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhC
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccccccccchHHHHHHHhhHHHHhhhhHHHHHHH
Q psy18020 324 --------IDKEKAELERSISFLKEKETELDEILAVLT--EKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGE 393 (434)
Q Consensus 324 --------Le~~k~~Le~~i~~L~~~~~eLe~~I~~l~--~k~~~diDe~i~~~~~l~~Ql~~l~Aed~AieDtiy~L~~ 393 (434)
.++-...+... ......+++.+....++ +.+.++.+| +.+-+-..-..+..+++.+..+|.
T Consensus 393 ~d~~g~i~~~Ef~~~~~~~--~~~~~~~~~~~~F~~~D~d~dG~I~~~E-------l~~~l~~~~~~~~~~~~~~~~~D~ 463 (484)
T 3nyv_A 393 FDKNGYIEYSEFVTVAMDR--KTLLSRERLERAFRMFDSDNSGKISSTE-------LATIFGVSDVDSETWKSVLSEVDK 463 (484)
T ss_dssp CCTTSEEEHHHHHHHHHHH--HHHHHHHHHHHHHHHHCTTCCSEEEHHH-------HHHHHHHTTCCHHHHHHHHHHHCT
T ss_pred CCCCCeEeHHHHHHHHHhc--cccCcHHHHHHHHHHHCCCCCCcCCHHH-------HHHHHHhcCCCHHHHHHHHHHhcC
Q ss_pred HHhcCCCCHHHHHHHHHHH
Q psy18020 394 ALRRGVIDLEVYLKQVRSL 412 (434)
Q Consensus 394 aL~~g~I~ld~flK~vR~L 412 (434)
- +.|.|+++.|++.++.+
T Consensus 464 d-~dG~i~~~Ef~~~~~~~ 481 (484)
T 3nyv_A 464 N-NDGEVDFDEFQQMLLKL 481 (484)
T ss_dssp T-CCSEEEHHHHHHHHHHT
T ss_pred C-CCCcCCHHHHHHHHHhh
No 499
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=25.27 E-value=1.6e+02 Score=27.33 Aligned_cols=82 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccchHHHHHHH
Q psy18020 297 QEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILN 376 (434)
Q Consensus 297 ~~ele~L~~~q~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i~~~~~l~~Ql~~ 376 (434)
++....|..+-+=+.-+++++. ...++..+.+.+..+++.|.++..++++-|++++..-. +..+-+.+......|||.
T Consensus 120 ~Rt~~iLSalINF~~FRE~~~~-~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~-e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 120 KRTSRFLSGIINFIHFREACRE-TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD-EDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------------CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHH
Q ss_pred hhHH
Q psy18020 377 TFTE 380 (434)
Q Consensus 377 l~Ae 380 (434)
-+.+
T Consensus 198 ~vt~ 201 (250)
T 2ve7_C 198 QVSK 201 (250)
T ss_dssp HHHC
T ss_pred HHhh
No 500
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=25.20 E-value=2.2e+02 Score=22.07 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy18020 308 NELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAV 364 (434)
Q Consensus 308 ~EL~~~~~~L~~~~~eLe~~k~~Le~~i~~L~~~~~eLe~~I~~l~~k~~~diDe~i 364 (434)
..|..-.++++..+.+-+.+..........-.++.+++.+.|. .+-+|++|++
T Consensus 27 e~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~----~~GI~~eeL~ 79 (86)
T 3nr7_A 27 ETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLI----ADGIDPNELL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHH
Done!