RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18020
(434 letters)
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor
receptor and arginine...; endosome, trafficking complex,
VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces
cerevisiae} PDB: 2caz_A
Length = 174
Score = 157 bits (399), Expect = 1e-46
Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 9/179 (5%)
Query: 253 VPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQ 312
+ + + + T+ +E + + + + R+ Q E + + +
Sbjct: 5 ISPTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQ--------ESIARFHEIIAI 56
Query: 313 GKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYK 372
K L + + I++ L I L ++ + + + + DV+
Sbjct: 57 DKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSS-TSHVDDEDVNSIAVAKTDGLN 115
Query: 373 QILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYKHIS 431
Q+ N ++ A DTI + L RG I L+ ++KQ R L+R+QF+ R + + +S
Sbjct: 116 QLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITSPLS 174
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 103 bits (257), Expect = 2e-26
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQ 61
G Y+IP+C+WL+DT+P + PIC+V+PT+ M I ++VD GKIY PYLH W
Sbjct: 62 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 121
Query: 62 NSKLEGLIKTLASAFSALPPLYS 84
S L GLI+ + F PP++S
Sbjct: 122 QSDLLGLIQVMIVVFGDEPPVFS 144
Score = 66.1 bits (161), Expect = 3e-13
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
++PT+ M I ++VD GKIY PYLH W S L GLI+ + F PP++S
Sbjct: 90 VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 144
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 99 bits (249), Expect = 3e-26
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
SL SAV DK+R +M E+ +AQ E+ LK+TE +L +G KL M R+D+E AE++++I
Sbjct: 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNI 62
Query: 336 SFLKEKETELDEILA 350
LK+K+ EL L
Sbjct: 63 ELLKKKDEELSSALE 77
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomes, trafficking
complex, vacuole protei sorting, ESCRT protein
complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae}
SCOP: a.2.17.1 PDB: 2f66_A*
Length = 65
Score = 97.2 bits (242), Expect = 2e-25
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 369 PIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
Q+ N ++ A DTI + L RG I L+ ++KQ R L+R+QF+ R + +
Sbjct: 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITS 62
Query: 429 HIS 431
+S
Sbjct: 63 PLS 65
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 90.4 bits (224), Expect = 1e-21
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 1 MTNLSGLVYHIPVCIWLMDTHPDHAPICYVR------PTADMRINVSQNVDHTGKIYSPY 54
+ IPV +W+ +P P + T + + + +D G I P
Sbjct: 73 TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPI 132
Query: 55 LHTWTPQNSKLEGLIKTLASAFSALPPLYSS 85
LH W P L +++ L S PP +
Sbjct: 133 LHAWDPAAMNLIMVVQELMSLLHE-PPQDQA 162
Score = 60.0 bits (145), Expect = 5e-11
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 91 PATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSAL 150
P + T + + + +D G I P LH W L +++ L S
Sbjct: 98 PFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHE- 156
Query: 151 PPLYSS 156
PP +
Sbjct: 157 PPQDQA 162
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 53.5 bits (128), Expect = 9e-08
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 73 ASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQ 132
+ A+ P YS + T+P+Y PT+ S + T YSP T+
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSATSPSYSP-----TSP 1618
Query: 133 NSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPY-----PTQSYMPMP 187
+ + ++S P YS + T+P+Y+ S +P PT
Sbjct: 1619 SYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1672
Query: 188 GSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPGGS- 245
+ + P+Y P++ P Y+P + + S S +P +P + YSP P Y P
Sbjct: 1673 SPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1731
Query: 246 -TPATPYPVPTPSPAPAVTS 264
+P +P PT SP+ + TS
Sbjct: 1732 YSPTSPSYSPT-SPSYSPTS 1750
Score = 47.4 bits (112), Expect = 7e-06
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 146 AFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPG 205
++S P YS + P+ +PT ++ Y S P S +P P
Sbjct: 1612 SYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1668
Query: 206 YNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPGGST--PATPYPVPTPSPAPAV 262
Y+P + + S S +P +P + YSP P Y P + P +P PT SP+ +
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSP 1727
Query: 263 TSGG 266
TS
Sbjct: 1728 TSPS 1731
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/132 (20%), Positives = 39/132 (29%), Gaps = 24/132 (18%)
Query: 154 YSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY-----PGYNP 208
Y + + + S P S Y PGY
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFS----PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTS 1541
Query: 209 NAAAAPSGSIYPSYP-----------TPGATPGAGGYSPY-PLYPPGGST--PATPYPVP 254
++A S + P +P P + YSP P Y P + P +P P
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSP 1601
Query: 255 TPSPAPAVTSGG 266
T SP+ + TS
Sbjct: 1602 T-SPSYSATSPS 1612
Score = 42.8 bits (100), Expect = 2e-04
Identities = 40/141 (28%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 144 ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY 203
A+AFS PL ++ AS P S+ +P +Y
Sbjct: 1502 AAAFS---PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSY 1558
Query: 204 ----PGYNPNAAAAPSGSIY----PSY-PT-PGATPGAGGYSPY--------PLYPPG-- 243
PGY+ + A PS Y PSY PT P +P + YSP P Y P
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618
Query: 244 GSTPATPYPVPTPSPAPAVTS 264
+P +P PT SP+ + TS
Sbjct: 1619 SYSPTSPSYSPT-SPSYSPTS 1638
Score = 39.3 bits (91), Expect = 0.002
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 166 PTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYP--PSAYPGYNPNAA--------AAPS 215
Y+ A + TPY P S + G AA +
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR 1516
Query: 216 GSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGT 267
A+P G SP P S + Y + +PS +P+ T
Sbjct: 1517 EGFGDYGLLGAASPYKGVQSPGY-TSPFSSAMSPGYGLTSPSYSPSSPGYST 1567
Score = 32.4 bits (73), Expect = 0.34
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 31/167 (18%)
Query: 52 SPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYN----------GNI 101
SP +P S + ++S P YS + T+P+Y+ +
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 102 RPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQE 161
PT+ S + T YSP +++ + + ++S P YS
Sbjct: 1663 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT----SPSYSPTSPSYSP----- 1713
Query: 162 PATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNP 208
T+P+Y+ + SY P S T P+Y P++ P Y+P
Sbjct: 1714 --TSPSYSPT--------SPSYSPTSPSYSPTS-PSYSPTS-PSYSP 1748
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 52.8 bits (126), Expect = 1e-07
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYM---PMPGSNVNTPYPTYPPSAYPGYN 207
+ Q+ P N + NA + + P+ S N +AY G +
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAG-GFTAYGGAD 1515
Query: 208 PNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPP--GGSTPATPYPVPTPSPAPAVTS 264
A +P G+ + +PG + G+SP P Y P +P +P PT SP+ + TS
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPT-SPSYSPTS 1574
Query: 265 GG 266
Sbjct: 1575 PS 1576
Score = 50.9 bits (121), Expect = 6e-07
Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 33/220 (15%)
Query: 51 YSPYLHTWTPQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRIN 110
SP +P S + A+S P YS + T+P+Y+ PT+
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSP 1586
Query: 111 VSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYN- 169
S + T YSP +++ + ++S P YS + T+P+Y+
Sbjct: 1587 TSPSYSPTSPSYSPTSPSYSPT-----------SPSYSPTSPSYSPTSPSYSPTSPSYSP 1635
Query: 170 ---GNMASNAPYPTQSYMPMPGSNVNTPY--------PTYPPSAYPGYNPNAAAAPSGSI 218
++ Y S P S +P P+Y P++ P Y+P + + S
Sbjct: 1636 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTS- 1693
Query: 219 YPSY-PT-PGATPGAGGYSP-YPLYPPGGSTPATPYPVPT 255
P+Y PT P +P + GYSP P Y P +
Sbjct: 1694 -PNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732
Score = 48.9 bits (116), Expect = 3e-06
Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 30/208 (14%)
Query: 73 ASAFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQ 132
+ + + ++P ++ PT+ S T YSP +++
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSSPGFS----PTSPTYSPTSPAYSPTSPSYSPTSPSYSP- 1572
Query: 133 NSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAP----YPTQSYMPMPG 188
+ ++S P YS + T+P+Y+ S +P Y S P
Sbjct: 1573 ----------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1622
Query: 189 SNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY-PLYPPG---- 243
S +P P Y+P + + S S +P +P + YSP P Y P
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682
Query: 244 -----GSTPATPYPVPTPSPAPAVTSGG 266
+P +P PT SP+ + TS G
Sbjct: 1683 SPTSPSYSPTSPNYSPT-SPSYSPTSPG 1709
Score = 47.0 bits (111), Expect = 1e-05
Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 22/207 (10%)
Query: 75 AFSALPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNS 134
F P +S + P +PT PT+ S + T YSP +++ +
Sbjct: 1534 GFGVSSPGFSPTS---PTYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589
Query: 135 KLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTP 194
+ ++S P YS + T+P+Y+ S + PT + +
Sbjct: 1590 SYSPT----SPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPT 1643
Query: 195 YPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY--------PLYPPGGST 246
P+Y P++ P Y+P + A S S +P +P + YSP P Y P +
Sbjct: 1644 SPSYSPTS-PSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPS 1702
Query: 247 --PATPYPVPTPSPAPAVTSGGTITDE 271
P +P P SPA + +E
Sbjct: 1703 YSPTSPGYSPG-SPAYSPKQDEQKHNE 1728
Score = 44.7 bits (105), Expect = 5e-05
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 144 ASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAY 203
FS P + S Y G A P +Y P S P + S+
Sbjct: 1489 ELMFS--PLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS------PGFGVSS- 1539
Query: 204 PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSP-YPLYPPGGS--TPATPYPVPTP---- 256
PG++P + S S +P +P + YSP P Y P +P +P PT
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1599
Query: 257 --SPAPAVTS 264
SP+ + TS
Sbjct: 1600 PTSPSYSPTS 1609
Score = 42.0 bits (98), Expect = 4e-04
Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 16/166 (9%)
Query: 116 DHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASN 175
+ +G + + S L A A + + +
Sbjct: 1475 NESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPG 1534
Query: 176 APYPTQSYMPM------------PGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYP 223
+ + P P S +P P Y+P + + S S
Sbjct: 1535 FGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1594
Query: 224 TPGATPGAGGYSPY-PLYPPG--GSTPATPYPVPTPSPAPAVTSGG 266
+P +P + YSP P Y P +P +P PT SP+ + TS
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPS 1639
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 52.1 bits (124), Expect = 2e-07
Identities = 17/133 (12%), Positives = 30/133 (22%)
Query: 141 KTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPP 200
K + L ++ Q+PA A+ Y P P
Sbjct: 5 KKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Query: 201 SAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
+ + A S + + P P A P+ P
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124
Query: 261 AVTSGGTITDEHI 273
+ G + +
Sbjct: 125 SAAMGQNMRPMNQ 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 46.8 bits (111), Expect = 1e-06
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
+E ++ + R+++ E+ V +E L+ +++ K K
Sbjct: 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKI 79
Query: 330 ELERSISFLKEKETELDEILAVLTE---KTEVDVDE 362
+LE + + ++ + +E+ A LT K E + E
Sbjct: 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115
Score = 34.5 bits (79), Expect = 0.017
Identities = 10/68 (14%), Positives = 28/68 (41%)
Query: 288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
+ ++ +EE LK+ + + +L + +EK +L+ + ++ + +E
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 348 ILAVLTEK 355
L +
Sbjct: 70 RCDQLIKN 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 4e-06
Identities = 46/265 (17%), Positives = 72/265 (27%), Gaps = 86/265 (32%)
Query: 234 YSPY--PLYPPGGSTPATPYPVPTP-------------SPAPAVT------SGGTITDEH 272
Y LY + Y V PA V SG
Sbjct: 112 YIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------- 162
Query: 273 IKMSLKSAV--EDKIRRKMNEQ----KV-QAQEEIEILKQTEN-------ELNQGKFKLA 318
K + V K++ KM+ + + +L+ + +
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 319 RMFERIDKEKAELERSISFLKEKETE-----LDE---------------ILAVLTEKTEV 358
+ RI +AEL R LK K E L IL + T +V
Sbjct: 222 NIKLRIHSIQAELRR---LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQV 277
Query: 359 -DVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQV--RSLSRK 415
D A TTT T T + + + L DL + R LS
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRRLS-- 331
Query: 416 QFMFRALL------FKCYKHISYAR 434
+ + + +KH++ +
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDK 354
Score = 39.5 bits (91), Expect = 0.002
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 38/152 (25%)
Query: 288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID-KEKAELERSISFLKEKETELD 346
+ E + Q ++ + + + F + D K+ ++ +SI KE E+D
Sbjct: 10 ETGEHQYQYKDILSVFED--------AFV-----DNFDCKDVQDMPKSI-LSKE---EID 52
Query: 347 EILA-------------VLTEKTEVDVDEAVTTT-APIYKQILNTFTEE--AATEDTIYY 390
I+ L K E V + V YK +++ E + T Y
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 391 MGEALRRGVIDLEVYLKQVRSLSRKQFMFRAL 422
+ E R D +V+ K ++SR Q + L
Sbjct: 113 I-EQRDRLYNDNQVFAK--YNVSRLQ-PYLKL 140
Score = 38.7 bits (89), Expect = 0.004
Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 45/145 (31%)
Query: 321 FERIDKEKAE--LERSISFLKEKET-ELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNT 377
++ ++ +K +E S++ L+ E ++ + L+V I +L+
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----SA--------HIPTILLSL 394
Query: 378 FTEEAATEDTIYYMGEALRRGVID----------LEVYLKQVRSLSRKQFMFRALL---- 423
+ D + + + + +++ +YL+ L + + R+++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 424 -FKC---------------YKHISY 432
K Y HI +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGH 479
Score = 29.1 bits (64), Expect = 3.9
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 371 YKQILNTFTEEAATEDTIYYMGEALRRGVI---DLEVYLKQVRSLSRKQFMFRALLFK 425
YK IL+ F E+A ++ + + + ++ +++ + ++S +F LL K
Sbjct: 18 YKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Score = 28.3 bits (62), Expect = 6.8
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 27/101 (26%)
Query: 285 IRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSIS----FLKE 340
+ +K+ IL N L Q K + + I + ER ++ FL +
Sbjct: 503 LEQKIRHDSTAWNASGSIL----NTLQQ--LKFYKPY--ICDNDPKYERLVNAILDFLPK 554
Query: 341 KETEL------DEI-LAVLTEKTEVDVDEAVTTTAPIYKQI 374
E L D + +A++ E + +EA +KQ+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAI-FEEA-------HKQV 587
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 45.8 bits (108), Expect = 1e-05
Identities = 10/75 (13%), Positives = 31/75 (41%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
D I++KM K+ + ++ + E + + + ++ + + + +L+ + L +
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61
Query: 343 TELDEILAVLTEKTE 357
L + L +
Sbjct: 62 EALKDAQEKLELAEK 76
Score = 43.1 bits (101), Expect = 9e-05
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 274 KM-SLKSAVEDKIRR--KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
KM LK E+ + R + K A++ KQ E+EL + KL + +DK
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDR---SKQLEDELVSLQKKLKATEDELDKYSEA 63
Query: 331 LERSISFLKEKETELDE 347
L+ + L+ E + +
Sbjct: 64 LKDAQEKLELAEKKATD 80
Score = 41.2 bits (96), Expect = 4e-04
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 276 SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI 335
SL++ E K ++++ + +EEI++L E R +++K +LE +
Sbjct: 206 SLEAQAE-----KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260
Query: 336 SFLKEK----ETELDEILAVLTE 354
K K ELD L +T
Sbjct: 261 YAQKLKYKAISEELDHALNDMTS 283
Score = 34.6 bits (79), Expect = 0.042
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
+ + +EEI+ + L K ++ ++ ++E L LKE ET +
Sbjct: 185 LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK---LKEAETRAEF 241
Query: 348 ILAVLTEKTEVDVDEA 363
+ K E +D+
Sbjct: 242 AERSV-TKLEKSIDDL 256
Score = 34.6 bits (79), Expect = 0.053
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 279 SAVEDKIRRKMNEQKVQAQEEIEI----LKQTENELNQGKFKLARMFERIDKEKAELERS 334
+++ K++ ++ + E ++ L+ E + + +A + RI + EL+R+
Sbjct: 44 VSLQKKLK-ATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102
Query: 335 ISFLKEKETELDEILAVLTEKTE 357
L +L+E E
Sbjct: 103 QERLATALQKLEEAEKAADESER 125
Score = 34.2 bits (78), Expect = 0.059
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM----------FERIDKEKAELE 332
+ + + + +E L E++L + + + + + LE
Sbjct: 149 KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208
Query: 333 RSISFLKEKETELDEILAVLTEKTE 357
+KE + +E + VL++K +
Sbjct: 209 AQAEKYSQKEDKYEEEIKVLSDKLK 233
Score = 32.3 bits (73), Expect = 0.24
Identities = 15/139 (10%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISF 337
+ E + +N + +EE++ + + L KL + D+ + ++ S
Sbjct: 78 ATDAEADVA-SLNRRIQLFEEELD---RAQERLATALQKLEEAEKAADESERGMKVIESR 133
Query: 338 LKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRR 397
++ E +++ L ++ + ++A + ++++ ++ E+
Sbjct: 134 AQKDEEKMEIQEIQL-KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 192
Query: 398 GVIDLEVYLKQVRSLSRKQ 416
+++ ++SL +
Sbjct: 193 LEEEIKTVTNNLKSLEAQA 211
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 43.7 bits (104), Expect = 4e-05
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 262 VTSGGTITDEHI-KM---SLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKL 317
V +TD I M S+ A +D R + EQKV+A +E L L
Sbjct: 110 VKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLE---SLHGALAADAALL 166
Query: 318 ARMFERIDKEKAELERSISFLKE--KETELDEI 348
+ E+ ++ + + L E + ++D I
Sbjct: 167 S------AAERQVIDDAAAHLSEVAQGDDVDAI 193
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 42.2 bits (98), Expect = 2e-04
Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 4/117 (3%)
Query: 148 SALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYN 207
S + K + P + + + PG
Sbjct: 211 STITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSP 270
Query: 208 PNAAAAPSGSIYPSYPTPG----ATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
+ G++ P PG PG + PG P + P P
Sbjct: 271 RKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEP 327
Score = 39.5 bits (91), Expect = 0.001
Identities = 17/146 (11%), Positives = 34/146 (23%), Gaps = 2/146 (1%)
Query: 123 SPYLHTWTAQNSKLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQS 182
+ + + L++ + + + + T + P +
Sbjct: 219 REFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSI 278
Query: 183 YMPMPGSNV-NTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYP 241
PGS + P PG PG P G +
Sbjct: 279 GNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPG-RPEPGSAGTWNPGR 337
Query: 242 PGGSTPATPYPVPTPSPAPAVTSGGT 267
P + T P + + G+
Sbjct: 338 PEPGSAGTWNPGRPEPGSAGTWNTGS 363
Score = 38.3 bits (88), Expect = 0.004
Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 11/110 (10%)
Query: 162 PATNPTYNGNMASNAPYPTQSYMPMPGSNVN----TPYPTYPPSAYPGYNPNAAAAPSGS 217
+ G+ + P PGS P P + PG +G+
Sbjct: 276 SSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPG---RPEPGSAGT 332
Query: 218 IYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGT 267
P P PG+ P PG + + S P + G
Sbjct: 333 WNPGRPEPGSAGTWNPGRP----EPGSAGTWNTGSSGSSSFRPDSSGHGN 378
Score = 37.9 bits (87), Expect = 0.006
Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 2/110 (1%)
Query: 152 PLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAA 211
P+ T P + + + M + T +
Sbjct: 206 PILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSV-SQGTG 264
Query: 212 AAPSGSIYPSYPTPGAT-PGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
AP P + G PG+ G + PG P + P P
Sbjct: 265 LAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEP 314
Score = 37.1 bits (85), Expect = 0.010
Identities = 14/111 (12%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNA 210
+ + ++ G + P PG + P PG
Sbjct: 278 IGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPG----SAGTWNPGRPEPGSAGTW 333
Query: 211 AAAPSGSIYPSYPTPGAT-PGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
PG PG+ G P + +P
Sbjct: 334 NPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSP 384
Score = 34.1 bits (77), Expect = 0.076
Identities = 26/113 (23%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Query: 155 SSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAP 214
SS T P G P P + PG P P + PG
Sbjct: 290 SSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPG----RPEPGSAGTWNPG---RPEPGS 342
Query: 215 SGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGT 267
+G+ P P PG AG ++ GS+ P + P+ GT
Sbjct: 343 AGTWNPGRPEPG---SAGTWNT----GSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 32.9 bits (74), Expect = 0.22
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 151 PPLYSSRTKQEPATNPTYN-GNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPN 209
+ + EP + T+N G + P PGS T P P G
Sbjct: 290 SSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA-GTWNPGRPEPGSAGTWNP 348
Query: 210 AAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPAT 249
P + + + G++ S + P T
Sbjct: 349 GRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 31.4 bits (70), Expect = 0.61
Identities = 13/120 (10%), Positives = 23/120 (19%)
Query: 141 KTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPP 200
K + + ++ + P +S +
Sbjct: 182 KNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQT 241
Query: 201 SAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
A S+ +P G S PG P + P P
Sbjct: 242 KMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEP 301
Score = 28.3 bits (62), Expect = 5.3
Identities = 9/83 (10%), Positives = 17/83 (20%)
Query: 185 PMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
P+P + + + G +P PG
Sbjct: 216 PVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGT 275
Query: 245 STPATPYPVPTPSPAPAVTSGGT 267
S+ P + + G
Sbjct: 276 SSIGNVNPGSYGPGSSGTWNPGR 298
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 4e-04
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 34/102 (33%)
Query: 295 QAQEEIEILK--QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK-ETELDEILAV 351
+ +E E ++ + E +R+ + A + +EK + +L+E
Sbjct: 79 RLTQEPESIRKWREEQR------------KRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 352 LTEKTEVDVDEAVTTTAPIYKQILNTFTEEAA-----TEDTI 388
+E+ E K +N + A D I
Sbjct: 127 QSEQVE--------------KNKINNRIADKAFYQQPDADII 154
Score = 39.4 bits (91), Expect = 0.001
Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 26/85 (30%)
Query: 271 EHIK---------MSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMF 321
E I+ + A + E + +A++++E ++ R
Sbjct: 85 ESIRKWREEQRKRLQELDAAS---KVMEQEWREKAKKDLE------------EWN-QRQS 128
Query: 322 ERIDKEKAE-LERSISFLKEKETEL 345
E+++K K +F ++ + ++
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDADI 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 5e-04
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 39/170 (22%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQ--AQEEIEI----LKQTENELNQGKFKLARMFER 323
D H K + ++ D + + ++ I + GK K E+
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK----TEK 1705
Query: 324 IDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTT--APIYKQILNTFTEE 381
I KE E S +F EK L T+ T+ A+T A ++ + +
Sbjct: 1706 IFKEINEHSTSYTFRSEKG-LLS-----ATQFTQP----ALTLMEKA-AFEDL-----KS 1749
Query: 382 AATEDTIYYM-----GE--AL--RRGVIDLEVYLKQVRSLSRKQFMFRAL 422
GE AL V+ +E ++ V R M A+
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF--YRGMTMQVAV 1797
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 39.7 bits (92), Expect = 5e-04
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKV-------QAQEEIEILKQTENELNQGKFKLARMFE 322
++ ++ E + R +E QEE++ LK ++ + + M
Sbjct: 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128
Query: 323 RIDKEKAELERSISF--------LKEKETELDEILAVLTE 354
+KEK LE +++ L+++ E A LT+
Sbjct: 129 HSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLTD 168
Score = 35.5 bits (81), Expect = 0.016
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL-TE 354
A E++ L++ E N + R+ K E+ +SIS L+ EL E +L
Sbjct: 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63
Query: 355 KTEVD 359
K++ D
Sbjct: 64 KSQTD 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 37.2 bits (86), Expect = 0.001
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 271 EHIK---MSLKSAVEDKI-RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 326
E IK LK E+ I R + E + E+ KQ E E + KL + ++K
Sbjct: 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDR--CKQLEEEQQGLQKKLKGTEDEVEK 62
Query: 327 EKAELERSISFLKEKETELDEI---LAVLTEK 355
++ + L++ E + + +A L +
Sbjct: 63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRR 94
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.2 bits (94), Expect = 0.001
Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
K++ K + + ++ +++ EL + K KL + ++ AEL+ I+ LK +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 343 TELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDL 402
+ +E L + E + + K+I + + ++ + E+ +
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNAL----KKIRELESHISDLQEDL----ESEKAARNKA 1142
Query: 403 EVYLKQVRSLSRK 415
E KQ R LS +
Sbjct: 1143 E---KQKRDLSEE 1152
Score = 39.0 bits (91), Expect = 0.003
Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
+ + K+ +++ +E + L E + L ++ + + +ELE + +
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 340 EKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGV 399
+ EL++I K E + + A + QI + A E+ + L
Sbjct: 1053 KSRQELEKIK----RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 400 IDLEVYLKQVRSL 412
LK++R L
Sbjct: 1109 SQKNNALKKIREL 1121
Score = 38.7 bits (90), Expect = 0.004
Identities = 19/131 (14%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
E++ +++ +K + Q+++ L++ E + KL EK + I +++
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL-------QLEKVTADGKIKKMEDD 991
Query: 342 ETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVID 401
+++ LT++ ++ + + EE + + + +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERV--------SDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 402 LEVYLKQVRSL 412
LEV LK+
Sbjct: 1044 LEVRLKKEEKS 1054
Score = 34.8 bits (80), Expect = 0.059
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
E + + +ED+ +K N K + +E + + +L K + +K+K +
Sbjct: 1094 EEELQAALARLEDETSQKNNALK-KIRELESHISDLQEDLESEKAARNKA----EKQKRD 1148
Query: 331 LERSISFLKEKETELDEILAVLTE---KTEVDVDE 362
L + LK + + + A E D D+
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 33.3 bits (76), Expect = 0.19
Identities = 10/83 (12%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 278 KSAVEDKIRRKMNEQKV---QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERS 334
+ ++ ++ +K E + + ++E ++ + + ++ + E ++ EKA ++
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Query: 335 ISFLKEKETELDEILAVLTEKTE 357
++ EL+ + L + +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLD 1165
Score = 32.1 bits (73), Expect = 0.43
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
E ++ + E +V+ + + L++ +E+ + +++ EK ++++ + L+E+
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 342 ETELDEILAVL-TEKTEVD 359
E + L EK D
Sbjct: 964 LEEEEAARQKLQLEKVTAD 982
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 39.1 bits (90), Expect = 0.001
Identities = 15/107 (14%), Positives = 21/107 (19%), Gaps = 3/107 (2%)
Query: 166 PTYNGNMASNAPYPTQSYMPMPGSNVNTPYP-TYPPSAYPGYNPNAAAAPSGSIYPSYPT 224
T Y P G P+ + G+ +
Sbjct: 13 NTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 72
Query: 225 PGATPGAG--GYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTIT 269
P G G G P T + A GG +
Sbjct: 73 PHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYML 119
Score = 37.5 bits (86), Expect = 0.004
Identities = 14/106 (13%), Positives = 19/106 (17%), Gaps = 4/106 (3%)
Query: 161 EPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSA----YPGYNPNAAAAPSG 216
G + YP Q P P G
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 217 SIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAV 262
P G G GG+ + + + A A
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAA 107
Score = 37.1 bits (85), Expect = 0.006
Identities = 15/83 (18%), Positives = 18/83 (21%), Gaps = 1/83 (1%)
Query: 185 PMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
P PG NT YP PG G + P GG+ G
Sbjct: 6 PKPGGGWNTGGSRYPGQGSPG-GNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64
Query: 245 STPATPYPVPTPSPAPAVTSGGT 267
+ G
Sbjct: 65 PHGGGWGQPHGGGGWGQGGTHGQ 87
Score = 35.6 bits (81), Expect = 0.017
Identities = 11/97 (11%), Positives = 18/97 (18%), Gaps = 3/97 (3%)
Query: 173 ASNAPYPTQSYMPMPGSNVNTPYP---TYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATP 229
+ P P + P YPP G+ + P
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 230 GAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
+ P GG + +
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNM 98
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 38.6 bits (89), Expect = 0.002
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 14/135 (10%)
Query: 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVL---------- 352
+ E K + + + + EL +E E EL+ L
Sbjct: 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD 64
Query: 353 TEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEV----YLKQ 408
++ + +V+ Y Q + + E L + V +LE +
Sbjct: 65 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124
Query: 409 VRSLSRKQFMFRALL 423
R+ F L
Sbjct: 125 KRATIMSLEDFEQRL 139
Score = 31.6 bits (71), Expect = 0.33
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERID------KEKAELERSI 335
++++ + + E + + + T L + +L + ER EK L S+
Sbjct: 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSV 163
Query: 336 SFLKEKETELDEILAVLTEKTE 357
LK++ +L + LAV + E
Sbjct: 164 QRLKDEARDLRQELAVRERQQE 185
Score = 31.2 bits (70), Expect = 0.40
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 271 EHIKMSLKSAVE------DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI 324
E L++ + + ++ K+ Q Q+ +++ +L+ ++ K +L + +
Sbjct: 55 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114
Query: 325 DKEKAELERSISFLKEK------------------ETELDE 347
++ +LER+ E+ELDE
Sbjct: 115 EQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 36.8 bits (85), Expect = 0.002
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 274 KM-SLKSAVEDKIRR-KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331
KM LK E+ + R + E +A EE KQ E+++ Q + +L + D+ EL
Sbjct: 10 KMQMLKLDKENALDRAEQAEADKKAAEER--SKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67
Query: 332 ERSISFLKEKETELDEI---LAVLTEK 355
+S L E + +A L +
Sbjct: 68 HKSEDSLLFAEENAAKAESEVASLNRR 94
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.1 bits (91), Expect = 0.002
Identities = 22/114 (19%), Positives = 31/114 (27%)
Query: 137 EGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYP 196
E + +T + + A G + AP + M + +
Sbjct: 324 EAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQ 383
Query: 197 TYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATP 250
GY P P P P P G P PP G+ PA P
Sbjct: 384 QQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437
Score = 33.7 bits (77), Expect = 0.11
Identities = 19/114 (16%), Positives = 27/114 (23%), Gaps = 7/114 (6%)
Query: 150 LPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPN 209
P + + + T + A + + + +
Sbjct: 330 FPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKM----QQQQ 385
Query: 210 AAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVT 263
AA P G P P GY P P G P P P AP
Sbjct: 386 AAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAP---PQGAPPAA 436
Score = 31.4 bits (71), Expect = 0.55
Identities = 19/84 (22%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 155 SSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYP--GYNPNA-- 210
+ P+ + M + Q P P YPP YP GY P
Sbjct: 357 GESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYP 416
Query: 211 --AAAPSGSIYPSYPTPGATPGAG 232
P P P A P G
Sbjct: 417 PQGYPPPPQGAPPQGAPPAAPPQG 440
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 37.1 bits (85), Expect = 0.002
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFE------RIDKEKAEL 331
+E +++ +E + + + +++L+ K KL+++ E +D E A+L
Sbjct: 22 VHRLEQELKEI-DESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKL 80
Query: 332 ERSISFLKEKETELDEILAVL----------TEKTEVDVDEAVT 365
E + +E D L EKTE D+ +AV
Sbjct: 81 EDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKAVN 124
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 39.3 bits (92), Expect = 0.002
Identities = 11/93 (11%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 268 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI--- 324
I +++ + + + + + + + ++E L+ +E E ++ + E I
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 325 DKEKAELERSISFLKEKETELDEILAVLTEKTE 357
KE + + ++E + L + +
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 38.9 bits (91), Expect = 0.003
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 276 SLKSAVED-----KIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
L+S VE + + + + QEEI L++ ++ + + E DK K E
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKHE 1020
Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDVDEA 363
E+ +S LKE+ T L L + E
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Score = 30.8 bits (70), Expect = 0.91
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 267 TITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDK 326
+ + DK + + + + +E+ +LK + ELN+ ++ + I +
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR---RIHDQAKEITE 1055
Query: 327 E-KAELERSISFLKEKETELDE 347
+ +L K+ E +L++
Sbjct: 1056 TMEKKLVEET---KQLELDLND 1074
Score = 30.8 bits (70), Expect = 1.1
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 12/135 (8%)
Query: 281 VEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKE 340
++ +R + + + Q +A+ + K K E RS+ K+
Sbjct: 870 IQKHVRGWLARVHYHRTLKAIVYLQCCYRR-----MMAK--RELKKLKIE-ARSVERYKK 921
Query: 341 KETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVI 400
L+ + L K + E + + + TE + E LR
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV----ERLRMSEE 977
Query: 401 DLEVYLKQVRSLSRK 415
+ + +V SL +
Sbjct: 978 EAKNATNRVLSLQEE 992
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 36.9 bits (84), Expect = 0.005
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM-FERI 324
GT +D +KM V + E+KV Q+E + E E + + R E+
Sbjct: 67 GTTSDAILKMKAYIKVVAI-QLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125
Query: 325 DKEKAELERSISFLKE--KETELDEILAVLTEK 355
K E + + +E E DE+ +L +
Sbjct: 126 RLHKEEWMKEALKEEARQEEKEQDEMGQLLHQL 158
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 37.3 bits (86), Expect = 0.006
Identities = 20/109 (18%), Positives = 22/109 (20%), Gaps = 2/109 (1%)
Query: 158 TKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGS 217
A P +P P P G P G
Sbjct: 88 KDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR 147
Query: 218 IYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
+ AT G YPPG P P P P G
Sbjct: 148 GTVAAAAAAATASIAG--APTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194
Score = 35.4 bits (81), Expect = 0.022
Identities = 13/80 (16%), Positives = 19/80 (23%)
Query: 179 PTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYP 238
+ + + P PG G+ P P P
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Query: 239 LYPPGGSTPATPYPVPTPSP 258
+ P G+ P P P P
Sbjct: 205 IPPGRGTPMGMPPPGMRPPP 224
Score = 35.0 bits (80), Expect = 0.033
Identities = 17/91 (18%), Positives = 20/91 (21%), Gaps = 1/91 (1%)
Query: 170 GNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATP 229
G + P + T P+ YP P
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194
Query: 230 GAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
P PPG TP P P P P
Sbjct: 195 MRPPMGPPMGIPPGRGTP-MGMPPPGMRPPP 224
Score = 33.5 bits (76), Expect = 0.095
Identities = 19/125 (15%), Positives = 28/125 (22%)
Query: 142 TLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPS 201
L S PP + + P + A + +PMP + P
Sbjct: 76 NLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135
Query: 202 AYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPA 261
+ + + T Y P PP P P P
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195
Query: 262 VTSGG 266
G
Sbjct: 196 RPPMG 200
Score = 31.2 bits (70), Expect = 0.45
Identities = 17/96 (17%), Positives = 22/96 (22%), Gaps = 6/96 (6%)
Query: 170 GNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATP 229
G A + + P V P G AA + + S
Sbjct: 113 GIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRG----TVAAAAAAATASIAGAPTQY 168
Query: 230 GAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSG 265
G P P G P P P P +
Sbjct: 169 PPGRGGPPPPMGRGAPPP--GMMGPPPGMRPPMGPP 202
Score = 27.7 bits (61), Expect = 6.1
Identities = 16/83 (19%), Positives = 18/83 (21%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNA 210
P + A + G P PM PP P P
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Query: 211 AAAPSGSIYPSYPTPGATPGAGG 233
P P PG P G
Sbjct: 204 GIPPGRGTPMGMPPPGMRPPPPG 226
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 36.5 bits (84), Expect = 0.006
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
+ K ++++ + +EEI++L E R +++K +LE + K K
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 342 ----ETELDEILAVLTEKTE 357
E+ ++ + E
Sbjct: 121 YKAISEEMKQLEDKVEELLS 140
Score = 30.7 bits (69), Expect = 0.54
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 303 LKQTEN---ELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357
+KQ E+ EL + L R+ K E + K EL+E L +T +
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLK 59
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 36.3 bits (83), Expect = 0.009
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 271 EHIKM--SLKSAVEDKIRRKMNEQKVQA-QEEIEILKQTENELNQGKFKLARMFERIDKE 327
E + ++ RR+ NE+++Q E LK E+++ + KL + +
Sbjct: 66 EQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASD 125
Query: 328 KAELERSISFLKEKETEL----DEILAVLTEK 355
E+++ ++ LK +L D+ L LT+K
Sbjct: 126 NREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157
Score = 32.0 bits (72), Expect = 0.23
Identities = 10/83 (12%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 271 EHIKMSLKSAVEDKIRR--KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 328
E + E R +++E + + ++E+ E+++ L ++ K +
Sbjct: 88 EKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIR 147
Query: 329 AELERSISFLKEKETELDEILAV 351
+ ++ ++ +++E L +
Sbjct: 148 DQYLVWLTQKGARQKKINEWLGI 170
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.6 bits (84), Expect = 0.009
Identities = 15/155 (9%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 270 DEHIKMSLK-SAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEK 328
+ H+K ++ S ++ +I + + +++++ + N+ L + +
Sbjct: 4 NTHLKQLIEISHLDKEIDSLEPLIR-EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQV 62
Query: 329 AELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATEDTI 388
++ E+++ K + + ++ + + E+ + + I
Sbjct: 63 SKNEQTLQDTNAKIASIQKKMSEIKSERELRS---------LNIEEDIAKERSNQANREI 113
Query: 389 YYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALL 423
+ ++R E K++ L + +L+
Sbjct: 114 ENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV 148
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 35.4 bits (81), Expect = 0.010
Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 263 TSGGTITDEHIKMSLKSAVEDKIR--RKMNEQKVQAQEEIEILKQTENELNQGKFKLARM 320
GG ++E+++ + S + +KI K + + E + + FK +M
Sbjct: 20 KLGGYESEEYLQR-VASYINNKITEFNKEESYRRMSAELRTDM--MYLNIADDYFKAKKM 76
Query: 321 FERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357
+ + + ++ I LK + ++ +
Sbjct: 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK 113
Score = 32.7 bits (74), Expect = 0.084
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 268 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKE 327
I D++ K K+ ++ +EI LK A+ + + E
Sbjct: 66 IADDYFKA-------KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118
Query: 328 KAELERSISFLKEKETELDE 347
+ +++I + ETEL++
Sbjct: 119 INKYQKNI---VKLETELND 135
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 37.0 bits (85), Expect = 0.010
Identities = 23/127 (18%), Positives = 33/127 (25%), Gaps = 5/127 (3%)
Query: 148 SALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYN 207
S L P S + + +A+ P T P P PP G +
Sbjct: 12 SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA--PAAGNPPDTVTGDS 69
Query: 208 --PNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSG 265
P+G + P G P P + A P P P P
Sbjct: 70 VLQRILRGPTG-PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRV 128
Query: 266 GTITDEH 272
++
Sbjct: 129 EEVSRRI 135
Score = 34.3 bits (78), Expect = 0.069
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 170 GNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATP 229
G+ + + + GS++ P + AA+ +++P P P
Sbjct: 2 GSSHHHHHHSSGL--VPRGSHMVIPSASVTS---------AASDFLAALHPPVTVPDPAP 50
Query: 230 GAGGYSPYPLYPPGGSTPATPYPVP-------TPSPAPA 261
P + + + T S APA
Sbjct: 51 PPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPA 89
Score = 32.4 bits (73), Expect = 0.26
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 204 PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVT 263
++ +++ + P+ T A + P P P P P PA
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDF-------LAALHPPVTVPDPAPPPPPAPA 57
Query: 264 SGG 266
+G
Sbjct: 58 AGN 60
Score = 29.0 bits (64), Expect = 3.6
Identities = 8/68 (11%), Positives = 12/68 (17%)
Query: 200 PSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPA 259
+ + I + T A+ P P P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64
Query: 260 PAVTSGGT 267
S
Sbjct: 65 VTGDSVLQ 72
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 35.4 bits (80), Expect = 0.015
Identities = 7/67 (10%), Positives = 29/67 (43%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
++ + + +E+ E L+ ++ ++ + + + ++++K LE +I +
Sbjct: 84 KESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQD 143
Query: 342 ETELDEI 348
+ +
Sbjct: 144 YNRANVL 150
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 33.7 bits (77), Expect = 0.018
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
+ E L++ EL + +L + E ++K + + ++ ++ + LD+
Sbjct: 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53
Score = 33.0 bits (75), Expect = 0.032
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
++ +++ E++ + +E+E +++ + + K+ ER+D+E+A+ +R S K
Sbjct: 8 QLQRELKELALEEE-RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFK 66
Query: 340 EKETELDEILAVLTEKTEVD 359
++ ELD+ L + +
Sbjct: 67 RQQLELDDELKSVENQMRYA 86
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 36.2 bits (83), Expect = 0.021
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNP-N 209
++S++ T+PT G+MA+ + +P+ +++P T P +
Sbjct: 13 DKMFSTQV-NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 71
Query: 210 AAAAPSGSIY---PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
++P G P+ PT G + G+ S P + PA SG
Sbjct: 72 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 131
Score = 31.2 bits (70), Expect = 0.63
Identities = 8/76 (10%), Positives = 16/76 (21%)
Query: 185 PMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
+ +P + + PG +SP
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 245 STPATPYPVPTPSPAP 260
+ P+ V + P
Sbjct: 64 NGMGPPFSVISSPMGP 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 34.0 bits (77), Expect = 0.021
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 268 ITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKF------KLARMF 321
+ + + LK V + + + EQ+ Q+ + + EL++ + K R
Sbjct: 36 TESQRVVLQLKGHVSE-LEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSL 94
Query: 322 ERIDKEKAELERSISFLKEKETEL 345
I+++ E+ S LKEK +EL
Sbjct: 95 SEIERKAQANEQRYSKLKEKYSEL 118
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 35.4 bits (82), Expect = 0.031
Identities = 11/75 (14%), Positives = 22/75 (29%)
Query: 280 AVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLK 339
+ D IR KM + + + + K A +E + L+
Sbjct: 131 EISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQ 190
Query: 340 EKETELDEILAVLTE 354
+ E + + L
Sbjct: 191 KLEDDAKDNQQKLEA 205
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 34.9 bits (80), Expect = 0.035
Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 31/122 (25%)
Query: 266 GTITDEHIKMSLKSAV-----EDKIRRKMNEQKVQAQ---------------EEIEILKQ 305
G + + + + ++R +++ E +E
Sbjct: 63 GKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM 122
Query: 306 TENELNQGKFKLARMFERIDK------EKAELERSISFLKEKETELDEILAVLTEKTEVD 359
+ F+L MF+ ID ++ E +R++ L+ ++++ A+ E+D
Sbjct: 123 LCYIYD--FFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALF---KELD 177
Query: 360 VD 361
+
Sbjct: 178 KN 179
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 34.7 bits (80), Expect = 0.052
Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 31/121 (25%)
Query: 266 GTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQG------------ 313
G + + K + K + + E++ + + G
Sbjct: 350 GQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAM 409
Query: 314 -------KFKLARMFERIDKE------KAELERSISFLKEKETELDEILAVLTEKTEVDV 360
+ +L R F D + EL +L+ EVD
Sbjct: 410 DRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLS------EVDK 463
Query: 361 D 361
+
Sbjct: 464 N 464
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat,
mitochondrial fission, mitochondri cytoplasm, apoptosis;
3.90A {Saccharomyces cerevisiae S288C}
Length = 242
Score = 34.1 bits (77), Expect = 0.059
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 8/178 (4%)
Query: 190 NVNTPYPTYPPSAYPGYN---PNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGST 246
N+ S + G+ P A A + +Y T G + G
Sbjct: 64 NLRKNASKKETSLFQGFKSYLPIAELAIENTERLNYDTNGTSGTVGAKDVMSKTNERDEI 123
Query: 247 PATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRK--MNEQKVQAQEEIEILK 304
P I+ + +LKS + + +N QK EI ++
Sbjct: 124 HTELPNFQDSFLIPPGVETAAISSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIE 183
Query: 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDE 362
L Q K KL I++ + LE ++ + ++ LD + E E + DE
Sbjct: 184 VEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR---LDFLEEYGLEVIEANSDE 238
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III
dependent non-heme intradiol dioxygenase, oxidoredu;
HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M*
3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M*
2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M*
3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Length = 238
Score = 33.7 bits (77), Expect = 0.072
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 14/94 (14%)
Query: 184 MPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPG 243
V +P + P Y + A +P ++ + T G P +
Sbjct: 2 AQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTG-------PNFSHL 54
Query: 244 GSTPATPYPVPTPSPAPAVTSG------GTITDE 271
G + + + G G + D+
Sbjct: 55 GFGA-HDHDLLLNFNNGGLPIGERIIVAGRVVDQ 87
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 34.2 bits (79), Expect = 0.083
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 9/118 (7%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTEN-----ELNQGKFKLARMFERIDKEKAELE 332
+ ++ + V Q+ ILK+ EN + G + + + LE
Sbjct: 862 HAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 921
Query: 333 RSISFLKEKETELD----EILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATED 386
+ E + + ILA LTE V E + Q A T
Sbjct: 922 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 979
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane,
adapter prote organelle division; 2.70A {Saccharomyces
cerevisiae}
Length = 72
Score = 31.0 bits (70), Expect = 0.090
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 289 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
+N QK EI ++ L Q K KL I++ + LE ++ + ++ L+E
Sbjct: 12 LNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 34.1 bits (77), Expect = 0.093
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 183 YMPMPGSNVNTPYPTY-----PPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY 237
P+ G+ + YP A PG P + AAP+ + + P A P
Sbjct: 293 NKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPA 352
Query: 238 PLYPPGGSTPATPYPVPTPSPAPAVTS 264
P + P P APA +
Sbjct: 353 AAEPGAAEAAGSVEPAPVEEVAPAPAA 379
Score = 32.5 bits (73), Expect = 0.27
Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 163 ATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSY 222
P Y MA + P ++ + + P P AAA + P+
Sbjct: 292 VNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAP---------AAATEAAPEAPAQ 342
Query: 223 PTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVT 263
P A P G PA PV +PAPA
Sbjct: 343 EVPAAEAVPAAAEPGAAEAAGSVEPA---PVEEVAPAPAAQ 380
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 33.8 bits (76), Expect = 0.10
Identities = 11/121 (9%), Positives = 25/121 (20%), Gaps = 11/121 (9%)
Query: 176 APYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYS 235
+ P + T P + + S P P + S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSS-TSRAPPPTNPDASSSSS 59
Query: 236 PY----------PLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKI 285
+ P Y P V ++ ++ + + ++
Sbjct: 60 SFAVPTIHFKESPFYKIQRLIPELVMNVEVTGGRGMCSAKFKLSKADYNLLSNPNSKHRL 119
Query: 286 R 286
Sbjct: 120 Y 120
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 33.6 bits (76), Expect = 0.10
Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 17/131 (12%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
DE + D ++ K ++ + + + Q KL ++ + +
Sbjct: 1 DEPPQSPWDRVK-DLATVYVDVLKDSGRDYVSQFEGSALG-KQLNLKLLDNWDSVTSTFS 58
Query: 330 ELERSIS-FLKEKETELDEILAVLTEKTEVDVDEAVTTTAPI--------------YKQI 374
+L + +E L++ L ++ D++E P Y+Q
Sbjct: 59 KLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQK 118
Query: 375 LNTFTEEAATE 385
+ E
Sbjct: 119 VEPLRAELQEG 129
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 34.0 bits (77), Expect = 0.11
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 269 TDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFK---------LAR 319
++ KI K EQ A+ +++ K + K K + R
Sbjct: 461 APPKTFEKSMMNLQTKIDAK-KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Query: 320 MFERIDKEKAELE-----RSISFLKEKETELDE-ILAVLTEKTEVDVDEAVTTT 367
+ E++ K + + + I+ K LD I +K V +++ T
Sbjct: 520 LEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 573
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 33.9 bits (78), Expect = 0.12
Identities = 8/104 (7%), Positives = 25/104 (24%), Gaps = 9/104 (8%)
Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEIL---------KQTENELNQGKFKLARMF 321
+ + R +++ + ++ T + G +
Sbjct: 859 TWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSI 918
Query: 322 ERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVT 365
+ + LE + E + + L + + V
Sbjct: 919 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP 962
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 33.4 bits (76), Expect = 0.13
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 6/112 (5%)
Query: 149 ALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNP 208
A+ + + ++ N + AS P P +P+ T P S +
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASK-GLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 209 NAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAP 260
+ + +PS P PY P + T SPA
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYP-----DPYTSSPESIMGYSYMDSYQTSSPAS 111
Score = 31.5 bits (71), Expect = 0.48
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 140 IKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYP 199
++ ++ A+P + + + G ++A P Y P P
Sbjct: 4 LEAMSQVIQAMPSDLTI-SSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62
Query: 200 PSAYPGYNPNAAAAPSGSIYPSYPTPGAT-PGAGGYSPYPLYPPGGSTPATPYPV 253
+ GY PS +I YP P + P + Y S + P+ +
Sbjct: 63 HGSLQGYQTYGHF-PSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLI 116
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 33.4 bits (75), Expect = 0.16
Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 23/137 (16%)
Query: 271 EHIKMSLKSAVE--DKIRRKMNEQKVQAQEEIEILKQTENELN---------------QG 313
+ + L AV+ +++ + + I +L + E ELN +
Sbjct: 499 TNFRTVLDKAVQADGQVKECYQSHR----DTIVLLCKPEPELNAAIPSANPAKTMQGSEV 554
Query: 314 KFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTT--APIY 371
L + +D+ K E E + LK ++ + V +EA++ T +Y
Sbjct: 555 VNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVY 614
Query: 372 KQILNTFTEEAATEDTI 388
+ E ++ +
Sbjct: 615 GGLTTKVQESLKKQEGL 631
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.9 bits (75), Expect = 0.18
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQ---GKFKLARMFER--I 324
+L + + + + +LK+T+ L+ G+F + E+
Sbjct: 207 MSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGF 266
Query: 325 DKEKAELERSISFLKEKETEL 345
+ +ER L E L
Sbjct: 267 IIKDWGIERPARGLSGGERAL 287
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 32.2 bits (74), Expect = 0.18
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 289 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD 346
+ E + +E IL+ +L + + R FE K + + I LK + D
Sbjct: 9 VEEMERLLREASSILRVEPAKLPK---TVERFFEEW---K-DQRKEIERLKSVIADLWAD 61
Query: 347 EILA---------VLTEKTEVDVDE 362
++ V+ E + D+
Sbjct: 62 ILMERAEEFDSMKVVAEVVDADMQA 86
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo
sapiens} PDB: 3q7l_A 3q7g_A 3qmk_A*
Length = 219
Score = 32.5 bits (73), Expect = 0.19
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 249 TPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTEN 308
TP P PT G I++ + K +E++ R++NE +E Q++N
Sbjct: 5 TPTPRPTDGVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVM---REWAMADNQSKN 61
Query: 309 ELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELDEILAVLTEKTEVDVD---EA 363
+ + E LE +S +++ ET ++A++ ++ ++ A
Sbjct: 62 LPKADR---QALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAA 118
Query: 364 VTTTAPIYKQILNT 377
+ P +++L
Sbjct: 119 LQADPPQAERVLLA 132
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 32.8 bits (76), Expect = 0.20
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
+++++ +A+ E+ ++++ L + R +DKE+ + +S +FL K
Sbjct: 145 QRLQKRAKGGDKEAKFELSVMEKILPVLENA--GMIRSVG-LDKEELQAIKSYNFLTLKP 201
Query: 343 T 343
T
Sbjct: 202 T 202
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 32.9 bits (74), Expect = 0.21
Identities = 13/58 (22%), Positives = 14/58 (24%)
Query: 208 PNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSG 265
PN P P P A ST A PSP + G
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGG 76
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 30.5 bits (69), Expect = 0.27
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 301 EILKQTENELNQGKFKLARMFERIDKE------KAELERSISFLKEK--ETELDEILAVL 352
+IL + + + + FE D + E + + + + D +
Sbjct: 10 DILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWN-- 67
Query: 353 TEKTEVDVD 361
E+ V+
Sbjct: 68 ----EMPVN 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.5 bits (75), Expect = 0.29
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 29/98 (29%)
Query: 270 DE---HIKMSLKSAVE--DKIRRKMNEQKVQAQEEIEI--------------LKQTENEL 310
DE ++M+L+SA E D + RK Q EIE LK E E+
Sbjct: 386 DEAAARLRMALESAPEEIDALERKK------LQLEIEREALKKEKDPDSQERLKAIEAEI 439
Query: 311 NQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 348
+ ++A++ ++E+ L + + + LDE+
Sbjct: 440 AKLTEEIAKLRAEWEREREILRK-LREAQH---RLDEV 473
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 31.0 bits (70), Expect = 0.33
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 283 DKIRRKMNEQKVQAQEEIE-ILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
+ +++ ++ +E K +EL + + L +++ KA +R+ EK
Sbjct: 12 GSLFQQVAQKT-GVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTK---LEK 67
Query: 342 E-TELDEILAVLTEKTEVDVDEAVTT-TAPIYKQILNTFTEEAATE 385
+ + A + E D + +I A ++
Sbjct: 68 DVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQ 113
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 32.2 bits (73), Expect = 0.34
Identities = 16/107 (14%), Positives = 23/107 (21%), Gaps = 3/107 (2%)
Query: 146 AFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPG 205
+ L+ + T A P + P S + Y P
Sbjct: 538 SVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPM 597
Query: 206 YNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYP 252
G+ YP G PPG S +
Sbjct: 598 MEHEMGGHHPGA---DYPVDGLPDLGHAQDLMDGLPPGDSNQLAWFD 641
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle,
hypothetical protein; 2.8A {Escherichia coli}
Length = 81
Score = 29.6 bits (66), Expect = 0.42
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 273 IKMSLKSAVEDKIRRKMNEQKVQ-AQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331
+ MSL+ V +K+ E KVQ A + I +L+ EL + L++ + ++ EL
Sbjct: 1 MTMSLE--VFEKL-----EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 53
Query: 332 ERSISFLKEKETELDEILAVLTEKTE 357
ER + LKE++ E L L + E
Sbjct: 54 ERENNHLKEQQNGWQERLQALLGRME 79
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear
pore complex, central TRAN channel, alpha helical
proteins, triple helix; 2.80A {Rattus norvegicus}
Length = 64
Score = 29.0 bits (65), Expect = 0.43
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 311 NQGK-FKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTE 357
N K L R E++ ++ L++ + F+ ++ EL+++L+ L E +
Sbjct: 10 NGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVK 57
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.1 bits (73), Expect = 0.44
Identities = 8/83 (9%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 287 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL-ERSISFLKEKETEL 345
K+ K ++++ + +N G KL ++++ L + L ++
Sbjct: 1856 VKLVTAK---YQDLQENQ---RFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERW 1909
Query: 346 DEILAVLTEKTEVDVDEAVTTTA 368
++ ++ + + ++
Sbjct: 1910 LNTTKQFSKTSQELIGNCIISSI 1932
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 31.2 bits (70), Expect = 0.53
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 174 SNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPG-AG 232
+ + QS ++ PP G + P PG AG
Sbjct: 151 FLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAG 210
Query: 233 GYSPYPLYPPGGSTPATPY 251
P P +P G + +
Sbjct: 211 PGGPPPPFPAGQTHHHHHH 229
Score = 29.7 bits (66), Expect = 1.7
Identities = 10/68 (14%), Positives = 15/68 (22%)
Query: 185 PMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
+ + G + + G PGA P G
Sbjct: 152 LSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGP 211
Query: 245 STPATPYP 252
P P+P
Sbjct: 212 GGPPPPFP 219
Score = 28.9 bits (64), Expect = 2.6
Identities = 5/59 (8%), Positives = 10/59 (16%), Gaps = 1/59 (1%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPN 209
A P + P P +P ++ +
Sbjct: 171 EGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTH-HHHH 228
Score = 28.5 bits (63), Expect = 3.2
Identities = 11/76 (14%), Positives = 12/76 (15%)
Query: 185 PMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
S S A S G P PG
Sbjct: 149 KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP 208
Query: 245 STPATPYPVPTPSPAP 260
+ P P P
Sbjct: 209 AGPGGPPPPFPAGQTH 224
Score = 28.1 bits (62), Expect = 5.4
Identities = 11/59 (18%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 204 PGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYP-LYPPGGSTPATPYPVPTPSPAPA 261
+ + G G +P P G P P P P PA
Sbjct: 162 TTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPA 220
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 30.4 bits (68), Expect = 0.61
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 277 LKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI---DKEKAELER 333
K ED R+ + E + L++ E + K A + E + LE
Sbjct: 64 AKHIAEDADRKYEEVARKLVIIESD-LERAEERAELSEGKCAELEEELKTVTNNLKSLED 122
Query: 334 SISFLKEKETELDEILAVLTEK 355
+ L K L+ +A L +
Sbjct: 123 KVEELLSKNYHLENEVARLKKL 144
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein,
membrane protein; NMR {Mycobacterium tuberculosis}
Length = 284
Score = 31.1 bits (70), Expect = 0.62
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 16/77 (20%)
Query: 208 PNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGT 267
P + P+G + TP +T GA + + VT G
Sbjct: 3 PQSVTGPTGVL--PTLTPTSTRGAS--------------ALSLSLLSISRSGNTVTLIGD 46
Query: 268 ITDEHIKMSLKSAVEDK 284
DE K +L +A+
Sbjct: 47 FPDEAAKAALMTALNGL 63
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 0.71
Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 207 NPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
A A G + P GA+ G ++ +
Sbjct: 43 GFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQE--ANGPADGYAAIAQADRLTQEPE 100
Query: 267 TITD--EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERI 324
+I E + L+ + + E + +A++++E Q ++E + R
Sbjct: 101 SIRKWREEQRKRLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR----- 154
Query: 325 DKEKAELERSISFLKEKETEL 345
+KA F ++ + ++
Sbjct: 155 IADKA-------FYQQPDADI 168
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 31.1 bits (70), Expect = 0.77
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 8/141 (5%)
Query: 296 AQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEK 355
+ EI+I K+ E+ +NQ + +A E I + R ++ +E L +++ +
Sbjct: 113 REGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNR----VEAEEARLSDLITGFVDP 168
Query: 356 TEVDVDEAVTTTAPIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRK 415
+ D A T T + ++ ++ A ID E+ ++ L R
Sbjct: 169 NA-EEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAEL-RA 226
Query: 416 QF--MFRALLFKCYKHISYAR 434
Q+ + K H +
Sbjct: 227 QYVVTRDTIKAKGRSHATAQE 247
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG,
transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Length = 157
Score = 29.9 bits (68), Expect = 0.87
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 317 LARMFERIDKEKA--EL----ERSISFLKEKETELDEILAVLTEKTEVDVDE 362
+ ++FE + + ++ E +S + + L +I+ L++ +V VD+
Sbjct: 35 MRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIGDVTVDK 86
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics,
PSI-biology, protein ST initiative, structural genomics;
NMR {Jannaschia SP}
Length = 85
Score = 28.6 bits (64), Expect = 0.96
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 280 AVEDKIRRKMNEQKVQAQEEI 300
E ++R K A+ ++
Sbjct: 61 RPEAEVRAKYEGLMAVAKAQL 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 0.97
Identities = 12/68 (17%), Positives = 29/68 (42%)
Query: 290 NEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEIL 349
N+ + E+ + L++ + LN G KL ++ + L + L K + ++ L
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961
Query: 350 AVLTEKTE 357
+ + +
Sbjct: 1962 KQMVQDQQ 1969
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding
protein; 4.00A {Plasmodium yoelii yoelii}
Length = 107
Score = 29.0 bits (64), Expect = 0.98
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 274 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMF-ERIDKEKAELE 332
K+ K + D +++ +NE +++ + + ++ GK L ++F E+ID+EK + E
Sbjct: 22 KIDKKKYIYDNMKKLLNEIAEIEKDKTSLEEVKNINMSYGK-SLNKLFLEKIDEEKKKSE 80
Query: 333 RSISFLKEKETELDEI 348
I +++ +LDEI
Sbjct: 81 NMIKSMEKYIKDLDEI 96
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 30.0 bits (67), Expect = 1.00
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 356
+ +++N K+ + + ID E +E+E ++ + K + D E+L +L +
Sbjct: 47 KITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQDIWTYNAELLVLLENQK 106
Query: 357 EVDV-DEAVTTTAPIYKQILNTFTEE 381
+D D V K+ L + E
Sbjct: 107 TLDEHDANVNNLYNKVKRALGSNAME 132
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA
ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces
cerevisiae}
Length = 246
Score = 30.2 bits (67), Expect = 1.1
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 272 HIKMSLKSAVEDKIRRKMNEQKVQAQEEIEI-LKQTENELNQGKFKLARMFERIDKEKAE 330
+ M L+S+ I RK+ E + ++ EI L + ++L + + + I + +
Sbjct: 126 KVVMELESS---AIIRKIAELTLHPVKKGEIDLFEMADKLYKDICCVNDSYRNIKESDSS 182
Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDV 360
+ L + LD++L E+T +
Sbjct: 183 NRNRVEQLARERELLDKLLETRDERTRAMM 212
>2ll0_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J unknown function; NMR {Paracoccus
denitrificans}
Length = 104
Score = 28.7 bits (64), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 279 SAVEDKIRRKMNEQKVQAQEEI 300
A E+ IR KM E + A+E+I
Sbjct: 79 KADEETIRAKMVELRATAREQI 100
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 29.6 bits (66), Expect = 1.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 356
N++N K+ F + KE LER I L +K + LD E+L +L +
Sbjct: 47 GITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENER 106
Query: 357 EVDVDEA 363
+D ++
Sbjct: 107 TLDFHDS 113
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B*
3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B*
2fk0_B* 3fku_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B*
3r2x_B* 3sm5_B* ...
Length = 174
Score = 29.3 bits (65), Expect = 1.6
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTE 354
N++N K+ FE + KE + LER + L +K + LD E+L ++
Sbjct: 45 FDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMEN 104
Query: 355 KTEVDVDEA 363
+ +D ++
Sbjct: 105 ERTLDFHDS 113
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP:
d.23.1.2 PDB: 2q4m_A
Length = 217
Score = 29.6 bits (66), Expect = 1.7
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 240 YPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLK 278
Y + P PTP V I M++
Sbjct: 5 YVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIV 43
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.9 bits (68), Expect = 1.7
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
D R +EI L+ N++ K + E +D+ A+ + + E E
Sbjct: 37 DTEWR-------TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89
Query: 343 TELDEILAVLTE 354
E++E+ +
Sbjct: 90 NEVEELKKKIDY 101
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural
genomics, lyase; 1.59A {Haemophilus influenzae} SCOP:
d.265.1.3 d.66.1.5
Length = 243
Score = 29.4 bits (67), Expect = 1.8
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 25/109 (22%)
Query: 262 VTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENE--LNQGKF---K 316
VT + + + + + +R E++ ++EIL +++G++ K
Sbjct: 136 VTLADPVEENYSA-ACAEGIL--LR---GEKEPTKPAKLEILDDYNVNLTISEGRYHQVK 189
Query: 317 LARMFERIDKEKAELER-SISFLKEKETELDEILAV-----LTEKTEVD 359
RMF + + L R I + LDE L LT+ E++
Sbjct: 190 --RMFAALGNKVVGLHRWKIGDVV-----LDESLEEGEYRPLTQS-EIE 230
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 29.2 bits (65), Expect = 1.9
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 356
Q +LN+ K F +I+KE +E+E I L++ +T++D E+L L +
Sbjct: 47 QINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQH 106
Query: 357 EVDVDEA 363
+D+ ++
Sbjct: 107 TIDLTDS 113
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 29.2 bits (65), Expect = 2.0
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 305 QTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTEKT 356
Q +LN+ K + FE ID E E+E+ I + + + E+L + +
Sbjct: 47 QITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVAMENQH 106
Query: 357 EVDVDEA 363
+D+ ++
Sbjct: 107 TIDLADS 113
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 29.8 bits (67), Expect = 2.1
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 155 SSRTKQEPATNPTYNGNMASNAPYPTQSYMPMP-------GSNVNTPYPTYPPSAYPGYN 207
S ++ +++ +Y A S M G + P PT P S YPG
Sbjct: 356 SGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Query: 208 PNAAAA 213
P +A A
Sbjct: 416 PYSALA 421
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Query: 253 VPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELN 311
+ P P V S D+ I ++ +R+ + + +++EI E++
Sbjct: 3 LKAAMPTPPVRSAAG--DKEIPIN-------GVRKAIAKHMSVSKQEIPHA-WMMVEVD 51
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 28.2 bits (63), Expect = 2.2
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345
+ + K + LK+ E L+ K L ++E+I + K +LE+ + + E ++
Sbjct: 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQGTE-DV 89
Query: 346 DEILAVLTEKTEV 358
+ + +T E+
Sbjct: 90 SDARSAITSAQEL 102
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG,
GFT structural G PSI-2, protein structure initiative;
NMR {Artificial gene}
Length = 110
Score = 28.2 bits (62), Expect = 2.2
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 287 RKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELD 346
RKM E+ A E+ +K TE+EL + E KE ++ + L + ELD
Sbjct: 19 RKMAEK---ANLELRTVK-TEDELK-------KYLEEFRKESQNIK--VLILVSNDEELD 65
Query: 347 EILAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAAT 384
+ L +K E+DV T+ K+ + F+EE +
Sbjct: 66 KA-KELAQKMEIDVRTRKVTSPDEAKRWIKEFSEEGGS 102
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor
specificity, envelope Pro fusion protein, membrane,
transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL
NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB:
2rfu_B* 3bt6_B*
Length = 176
Score = 28.8 bits (64), Expect = 2.4
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 301 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVL 352
E + + LN + +R+ EL I L EK + D E+ +L
Sbjct: 43 EAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISSQIELAVLL 102
Query: 353 TEKTEVDVDEA 363
+ + ++ ++
Sbjct: 103 SNEGIINSEDE 113
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 29.4 bits (65), Expect = 2.4
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 275 MSLKSAVEDKI---RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331
MS + ++ I ++KM + + EIE Q +L K+ + +L
Sbjct: 1 MSELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDL 60
Query: 332 ERSISFLKEKETELDEILAVLTEK 355
E+ ++ E E E+
Sbjct: 61 EQKLASGAENPGEKKSFSERAAEE 84
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.5 bits (66), Expect = 2.5
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGT 267
P+ PT TPG + G +TPA P P+ P
Sbjct: 2 PAAPTSPGTPGVAAATQAA--NGGPATPAPPALGAAPTGDPKPKKNKK 47
Score = 29.2 bits (65), Expect = 3.2
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 196 PTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPYPVPT 255
P P S PG AAA + + P+ P P A A P P P P P
Sbjct: 2 PAAPTS--PGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP--RPA 57
Query: 256 PSPAPAVTSGGTITDEH 272
A T+ +
Sbjct: 58 GDNATVAAGHATLREHL 74
>1qu1_A Protein (influenza recombinant HA2 chain); hemagglutinin, low-PH,
virus/viral protein; 1.90A {Influenza a virus} SCOP:
h.3.1.1 PDB: 1htm_B
Length = 155
Score = 28.5 bits (63), Expect = 2.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 301 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVL 352
+ Q +LN+ K F +I+KE +E+E I L++ +T++D E+L L
Sbjct: 13 AAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVAL 72
Query: 353 TEKTEVDVDEA 363
+ +D+ ++
Sbjct: 73 ENQHTIDLTDS 83
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 29.0 bits (66), Expect = 2.6
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 325 DKEKAELERSISFLKEKETELDEILA 350
+ L++S + E L+ +
Sbjct: 285 QADLDLLQKSAKIVDENCKMLESTIG 310
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 29.3 bits (66), Expect = 2.8
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 242 PGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIE 301
G +P P+P P P P P + + + + ++ + +K ++ +
Sbjct: 5 SQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYK 64
Query: 302 ILKQTENELNQGKF 315
+ Q L G
Sbjct: 65 VTSQ---VLGLGIN 75
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 28.8 bits (63), Expect = 3.1
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISF 337
+ + I+R + E + E L Q + R A LER
Sbjct: 175 REHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE---------NREAHFAAMLER---- 221
Query: 338 LKEKETELDEI 348
L+EK+ +E+
Sbjct: 222 LQEKDKHAEEV 232
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.9 bits (64), Expect = 3.3
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345
R + + Q Q +E ++ ++ E G ++ I + K S +KE + L
Sbjct: 185 RAEGSNQDDQVKELMDCIEDLLME-KNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSL 243
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 28.5 bits (64), Expect = 3.3
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 298 EEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI--------- 348
EE+E+ K+ +E+N+ +L ++ E++ + + + S ++ E ++ I
Sbjct: 1 EEVEMAKRRIDEINK---ELNQVMEQLGDARIDRQESSRQQRKAEI-MESIKRLYPGSVY 56
Query: 349 --LAVLTEKTEVDVDEAVTTTA 368
L L + T+ AVT
Sbjct: 57 GRLIDLCQPTQKKYQIAVTKVL 78
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 29.0 bits (64), Expect = 3.4
Identities = 12/63 (19%), Positives = 17/63 (26%)
Query: 167 TYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPG 226
+ + N + S + G PT P AP Y + PTP
Sbjct: 286 NMASSKSGNIWFAFNSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345
Query: 227 ATP 229
Sbjct: 346 VKT 348
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase,
aromatic degradation, non-heme iron, beta-SA mixed
alpha/beta structure; 1.80A {Acinetobacter SP} SCOP:
b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B
2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B*
2buv_B* 2buw_B*
Length = 241
Score = 28.6 bits (64), Expect = 3.4
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 14/90 (15%)
Query: 188 GSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTP 247
G+ +PP+ PGY + +P ++ T P +
Sbjct: 7 GAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTA-------PHFSA-DKFG 58
Query: 248 ATPYPVPTPSPAPAVTSG------GTITDE 271
+ + G G + D+
Sbjct: 59 PKDNDLILNYAKDGLPIGERVIVHGYVRDQ 88
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 29.1 bits (65), Expect = 3.5
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 333
K DK+ K +A+++ ++L+ L + +K
Sbjct: 324 KFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKIS 379
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 28.4 bits (63), Expect = 3.6
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 303 LKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK--ETELD------EILAVLTE 354
+ Q +LN+ K F +I+KE +E+E I L++ +T++D E+L L
Sbjct: 45 IDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALEN 104
Query: 355 KTEVDVDEA 363
+ +D+ ++
Sbjct: 105 QHTIDLADS 113
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral
virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Length = 554
Score = 29.0 bits (64), Expect = 3.8
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 8/163 (4%)
Query: 80 PPLYSSRTKQEPATNPTYNGNIRPTADMRI-----NVSQNVDHTGKIYSPYLHTWTAQNS 134
PP Y+ T + T + + ++ + S + TG + ++
Sbjct: 181 PPQYAYLTVGDVNTQGISGDSKKLASEESAFYVLEHSSFQLLGTGGTAT---MSYKFPPV 237
Query: 135 KLEGLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTP 194
E L + PLY SR ++ + Q MPG VN+
Sbjct: 238 PPENLEGCSQHFYEMYNPLYGSRLGVPDTLGGDPKFRSLTHEDHAIQPQNFMPGPLVNSV 297
Query: 195 YPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPY 237
S+ G +G+ + + P + Y +
Sbjct: 298 STKEGDSSNTGAGKALTGLSTGTSQNTRISLRPGPVSQPYHHW 340
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 28.6 bits (65), Expect = 4.7
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 295 QAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
+EE I+++ L + K + R + ++E + S+ L K
Sbjct: 181 AKKEEQAIIEKVYQYLTETK-QPIRKGDWSNREVEII-NSLYLLTAK 225
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 28.6 bits (65), Expect = 4.8
Identities = 11/67 (16%), Positives = 32/67 (47%)
Query: 288 KMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDE 347
++++++ + + +E L+ N+L++ KL R + + + ++ + E EL +
Sbjct: 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRK 93
Query: 348 ILAVLTE 354
+ L
Sbjct: 94 VEEELKN 100
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 28.1 bits (63), Expect = 4.9
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 283 DKIRRKMNEQKVQAQEEI-EILKQTENELNQGKF 315
KI E+K A++E E LK E +L +
Sbjct: 111 RKIWTSKGEEKEAAKKEFIEALKLLEEQLGDKTY 144
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 28.2 bits (63), Expect = 5.1
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
E +K + +E+ + EQ+ Q +E+++ L E + I K
Sbjct: 67 EEMKKAQDLEMEE-LFAFYTEQERQIREKLDFLSALE--------------QTISLVKKR 111
Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAPIYKQILN 376
++R + + E + + + +TE + Y ++
Sbjct: 112 MKRQMEYPALGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKK 157
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein;
1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Length = 272
Score = 28.0 bits (62), Expect = 5.2
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 126 LHTWTAQNSKLE--GLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSY 183
H ++ LE G++ + + + T Q N + + N YP + +
Sbjct: 124 FHFFSVGGEALELQGVLFNYRTKYPDGTIFPKNATVQSQVMNTEHKAYLDKNKAYPVECW 183
Query: 184 MPMPGSNVNTPY 195
+P P N NT Y
Sbjct: 184 VPDPTRNENTRY 195
>1ueo_A Penaeidin-3A, penaeidin-3; helix, coil-helix-coil, proline-rich,
cysteine-rich, disulfide bond, antibiotic; NMR
{Litopenaeus vannamei} SCOP: j.107.1.1
Length = 63
Score = 25.9 bits (56), Expect = 5.3
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 232 GGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITD 270
GGY+ PP P P+ + P G + +
Sbjct: 5 GGYARPIPRPPPFVRPLPGGPIGPYNGCPVSCRGISFSQ 43
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase;
2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB:
1ksl_A 1ksv_A*
Length = 234
Score = 27.8 bits (63), Expect = 5.8
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 262 VTSGGTITDEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENE--LNQGKF---K 316
VT + D+ + V+ + NE+ + +E++ T+ +++G++ K
Sbjct: 137 VTLESPVADDTAE-QFAKGVQ--LH---NEKDLTKPAVLEVITPTQVRLTISEGRYHQVK 190
Query: 317 LARMFERIDKEKAELER-SISFLKEKETELDEILAV-----LTEKTEVD 359
RMF + EL R I + LD LA LTE+ E+
Sbjct: 191 --RMFAAVGNHVVELHRERIGGIT-----LDADLAPGEYRPLTEE-EIA 231
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 28.3 bits (64), Expect = 5.9
Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 289 MNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 348
+N ++ ++ + + ++ +L + +K++ + + EI
Sbjct: 333 LNNHYIKEADDARLAGLAKPFFAALGIDAGA-----IEQGPDLVSVMGLMKDRASTVKEI 387
Query: 349 ---LAVLTEKTEVDVDEAVTTTAPIYKQILNTFTEEAATED 386
A+ D + L F T +
Sbjct: 388 AENSAMFYRAPAPGADALAQHVTDAVRPALVEFAAALKTVE 428
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.3 bits (61), Expect = 6.1
Identities = 17/96 (17%), Positives = 25/96 (26%)
Query: 163 ATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSY 222
+ P + + + MP P+ + N A +
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450
Query: 223 PTPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSP 258
PTP P A Y P P P P+P
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 27.7 bits (62), Expect = 6.7
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 24/81 (29%)
Query: 190 NVNTPYPTYPPSAYPG------------------YNPNAA-AAPSGSIYPSYPTPGATPG 230
N N P++ Y + AAP I + + P
Sbjct: 206 NENQNASNTWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPV 265
Query: 231 AGGYSPYPLYPPGGSTPATPY 251
+ YS G++ ATP+
Sbjct: 266 SDAYSFM-----AGTSMATPH 281
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide
binding, virus assembly, acid, viral protein; HET: SIA
GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1
PDB: 1vpn_A* 1cn3_A
Length = 289
Score = 27.7 bits (61), Expect = 6.7
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 151 PPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPY 195
++ NP + + YP + + P P N NT Y
Sbjct: 164 TITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPDPAKNENTRY 208
>3u24_A Putative lipoprotein; COG4805, DUF885, structural genomics,
PSI-biology, midwest C structural genomics, MCSG, lipid
BIND protein; 2.25A {Shewanella oneidensis}
Length = 572
Score = 28.0 bits (62), Expect = 7.0
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 194 PYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPG 230
P Y P + Y P G +
Sbjct: 352 ETPEYMRGYASISAPGPYDKLGNTYYNVTPLDGMSNE 388
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 28.1 bits (62), Expect = 7.5
Identities = 17/102 (16%), Positives = 22/102 (21%), Gaps = 3/102 (2%)
Query: 150 LPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPN 209
L+ + T A P + P S + Y P
Sbjct: 678 TSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHE 737
Query: 210 AAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATPY 251
A G YP P PPG S +
Sbjct: 738 MAGHHPGPDYPVDGLP---DLGHTQDLIDGLPPGDSNQLAWF 776
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 27.9 bits (62), Expect = 7.8
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 9/133 (6%)
Query: 138 GLIKTLASAFSALPPLYSSRTKQEPATNPTYNGNMASNAPYPTQSYMPMPGSNV------ 191
G + +A+ + + ++ ++ Y GS++
Sbjct: 408 GRVNAYKAAYYDNYAKLTFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYD 467
Query: 192 -NTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPATP 250
N Y +AY G+ P+ + + G+ Y + P+
Sbjct: 468 PNGNQVDYSYTAYYGFEKVGYYNPTAGTW--TIKVVSYSGSANYQVDVVSDGSLGQPSGG 525
Query: 251 YPVPTPSPAPAVT 263
P+PSP+P T
Sbjct: 526 GSEPSPSPSPEPT 538
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor,
phosphoprotein, UBL conjugation, DNA-binding,
polymorphism; HET: DNA; 3.30A {Homo sapiens}
Length = 209
Score = 27.4 bits (59), Expect = 7.8
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 271 EHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAE 330
E + +L A+++ K++++ Q EI LK+ EL + + M E I++ E
Sbjct: 104 EKRRKALYEALKE--NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGE 161
Query: 331 LERSISFLKEKETELDEILAVLTEKTEVDVDEAVTTTAP 369
+ L +E + +E + + ++ T
Sbjct: 162 PLDNFESLDNQEFDSEEETVEDSLVEDSEIGTCAEGTVS 200
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 28.0 bits (61), Expect = 7.8
Identities = 8/67 (11%), Positives = 16/67 (23%)
Query: 183 YMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPP 242
+ + P G + GS+ S G G + + P
Sbjct: 350 IVVANYGSAAYPIGQMTKKQCSGISMEFNLGGGGSLSASKAQSMIDGGYGWFMGFAPSPA 409
Query: 243 GGSTPAT 249
+ +
Sbjct: 410 KYGSVFS 416
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 27.6 bits (62), Expect = 7.8
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQ---GKFKLARMFERI-----DKEKA 329
K AV +R + ++Q E+ + + GK ++AR ++ K +A
Sbjct: 24 KRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
Query: 330 ELERSISFLKEKETELDEILAVLTEKTEVDVDEA 363
+ ++ + E+D I+ LT+ +D
Sbjct: 84 TKFTEVGYVGK---EVDSIIRDLTDSAGGAIDAV 114
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 27.5 bits (62), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 325 DKEKAELERSISFLKEKETELDEILA 350
DKE+ +L+ SI+ +K+ EILA
Sbjct: 295 DKEREQLQVSINAIKDLNKAAAEILA 320
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 27.6 bits (60), Expect = 8.6
Identities = 11/49 (22%), Positives = 13/49 (26%)
Query: 196 PTYPPSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGG 244
+ Y N NA+ S P P G PY G
Sbjct: 4 KAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTG 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 27.9 bits (61), Expect = 8.7
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 3/103 (2%)
Query: 164 TNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSGSIYPSYP 223
+ GN +P P + PGS+ + + + + SGS P P
Sbjct: 320 SGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSP 379
Query: 224 TPGATPGAGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGG 266
G G +P T VTS G
Sbjct: 380 GSGNARPNNPDWGTFEEVSGNVSPGTR---REYHTEKLVTSKG 419
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 27.4 bits (60), Expect = 8.7
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 278 KSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARM---FERIDKEKAELERS 334
+ + + Q+ ++ +L + + ++ A+L
Sbjct: 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQ 198
Query: 335 ISFLK-EKETELDEILAVLTEKTEV 358
+S ++ E E E + + +
Sbjct: 199 VSKIEWEYECEPGMVKGIHHGPSVA 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.382
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,556,353
Number of extensions: 392016
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1243
Number of HSP's successfully gapped: 241
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)