RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18020
(434 letters)
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated
protein 23, VPS23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 64
Score = 92.4 bits (230), Expect = 4e-24
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 369 PIYKQILNTFTEEAATEDTIYYMGEALRRGVIDLEVYLKQVRSLSRKQFMFRALLFKCYK 428
Q+ N ++ A DTI + L RG I L+ ++KQ R L+R+QF+ R + +
Sbjct: 2 DGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQRITS 61
Query: 429 HIS 431
+S
Sbjct: 62 PLS 64
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 82.3 bits (203), Expect = 2e-19
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 2 TNLSGLVYHIPVCIWLMDTHPDHAPICYVRPTADMRINVSQNVDHTGKIYSPYLHTWTPQ 61
G Y+IP+C+WL+DT+P + PIC+V+PT+ M I ++VD GKIY PYLH W
Sbjct: 59 VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHP 118
Query: 62 NSKLEGLIKTLASAFSALPPLYS 84
S L GLI+ + F PP++S
Sbjct: 119 QSDLLGLIQVMIVVFGDEPPVFS 141
Score = 53.4 bits (128), Expect = 2e-09
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 101 IRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEGLIKTLASAFSALPPLYS 155
++PT+ M I ++VD GKIY PYLH W S L GLI+ + F PP++S
Sbjct: 87 VKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFS 141
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 66.2 bits (161), Expect = 1e-13
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 6 GLVYHIPVCIWLMDTHPDHAPICYVRP------TADMRINVSQNVDHTGKIYSPYLHTWT 59
+ IPV +W+ +P P + T + + + +D G I P LH W
Sbjct: 69 SSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWD 128
Query: 60 PQNSKLEGLIKTLASAFSALPP 81
P L +++ L S P
Sbjct: 129 PAAMNLIMVVQELMSLLHEPPQ 150
Score = 44.2 bits (104), Expect = 4e-06
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 79 LPPLYSSRTKQEPATNPTYNGNIRPTADMRINVSQNVDHTGKIYSPYLHTWTAQNSKLEG 138
+P +Y + P + T + + + +D G I P LH W L
Sbjct: 80 VPSMYPV---KPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIM 136
Query: 139 LIKTLASAFSALPP 152
+++ L S P
Sbjct: 137 VVQELMSLLHEPPQ 150
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 36.4 bits (84), Expect = 0.002
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 239 LYPPGGSTPATPYPVPTPSPAPAVTSGGTITD-----EHIKMSLKSAVEDKIRRKMNEQK 293
L PP S P P S I E + ++ + + K ++
Sbjct: 21 LKPP--SFDGVP-EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
Query: 294 VQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEI 348
Q+ IE + +M + +A L + L+EK+ +E+
Sbjct: 78 EVIQKAIEENNNFIKMAKEKL--AQKMESNKENREAHLAAMLERLQEKDKHAEEV 130
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 35.8 bits (81), Expect = 0.004
Identities = 8/63 (12%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKA 329
++ + + + + Q+ E+ + ++Q +L + K ++ ++ KEK
Sbjct: 124 AYKKAVNSEKTLFKYLNQNDATQQ-GVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQ 182
Query: 330 ELE 332
+++
Sbjct: 183 DVD 185
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 31.8 bits (72), Expect = 0.045
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 283 DKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKE 342
D+ +++ ++ + Q E + + + + + + R E +R L+EKE
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKE--ALIARGKALGEEAKRLEEALREKE 91
Query: 343 TELDEILAVL 352
L+ +L +
Sbjct: 92 ARLEALLLQV 101
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 131
Score = 31.7 bits (71), Expect = 0.061
Identities = 13/79 (16%), Positives = 27/79 (34%)
Query: 286 RRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETEL 345
R + ++ V E E+ + E+ + LA I + + E +
Sbjct: 2 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 61
Query: 346 DEILAVLTEKTEVDVDEAV 364
D+++ +D AV
Sbjct: 62 DDLITAHLRGWTLDRLPAV 80
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 29.3 bits (66), Expect = 0.31
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 282 EDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEK 341
+ + K + LK+ E L+ K L ++E+I + K +LE FLK
Sbjct: 24 LKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLE---QFLKTY 80
Query: 342 ET--ELDEILAVLTEKTEV 358
+ ++ + + +T E+
Sbjct: 81 QGTEDVSDARSAITSAQEL 99
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 28.4 bits (63), Expect = 1.1
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 220 PSYPTPGATPGAGGYSPYPLYPPGGSTP----ATPYPVPTPSPAPAVTSGGTITDEHIKM 275
P ATP Y Y G P V PA V +T
Sbjct: 2 PLGSAAAATPAVRTVPQYK-YAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTAS---- 56
Query: 276 SLKSAVEDKIRRKMNEQ---KVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELE 332
L SA + ++ + E+ +QA K T L +L M E + +++++
Sbjct: 57 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 116
Query: 333 RSISFLKEKETE 344
+++ L+ + +
Sbjct: 117 EAVAVLQAHQAK 128
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 27.7 bits (61), Expect = 2.1
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 322 ERIDKEKAEL-----ERSISFLKEKETELDEILAVLTEKTEVDVDE 362
+ID+E ++ ER+ +++ +LD I+ +L EK ++ DE
Sbjct: 141 SKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDE 186
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 27.8 bits (61), Expect = 2.4
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 301 EILKQTENELNQGKFKLARMFERIDKEKAELERSISFLKEKETELDEILAVLTEKTEVDV 360
E K+ E L + + E A++E + + E E + +L E+ E ++
Sbjct: 3 EKKKEIEKLLARPDL-TPEQMKNYGMEYAKIEEIENITNRIK-ETQEFIELLREEGENEL 60
Query: 361 D 361
+
Sbjct: 61 E 61
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 26.2 bits (58), Expect = 2.9
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 291 EQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELERSI---SFLKEKETELDE 347
E+ E +K+ L + + + R++ +L+R + L+E E E E
Sbjct: 35 EKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAE-EYKE 93
Query: 348 ILAVLTE 354
VL
Sbjct: 94 ARLVLDS 100
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 27.7 bits (61), Expect = 3.3
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 223 PTPGATPGAGGYSPYPLYPP--GGSTPATPYPVPTPSPAPAVTS 264
P P G P P S P+ +P T P + +
Sbjct: 294 PVPKPATGQPAMFPASTGPQDLELSCPSERFPTLTTQPGASQSL 337
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 27.3 bits (60), Expect = 3.8
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 215 SGSIYPSYPTPGATPGAGGYS----PYPLYPPGGSTPATPYPVPTPSPAPAVT 263
S + Y + T A P GYS L G T + P P S P +T
Sbjct: 365 SHTSYTTTSTVTAAPS--GYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
Score = 26.2 bits (57), Expect = 8.4
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 164 TNPTYNGNMASNAPYPTQSYMPMPGSNVNTPYPTY--PPSAYPGYNPNAAAA 213
T T + + T + + P P S YPG P +A A
Sbjct: 371 TTSTVTAAPSGYSA-TTMAADLATAFGLTASIPIPTIPTSFYPGLTPYSALA 421
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 218
Score = 27.0 bits (58), Expect = 4.0
Identities = 7/70 (10%), Positives = 20/70 (28%)
Query: 272 HIKMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAEL 331
+R E + +E+ + + E + ++ R R D
Sbjct: 138 ERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLEGETAPVEENLEVFRFLSRADLLPERP 197
Query: 332 ERSISFLKEK 341
+++ +
Sbjct: 198 AKALVKAMPR 207
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 26.3 bits (58), Expect = 4.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 241 PPGGSTPATPYPVPTPSPAPAVTSGGTI 268
P G PAT T AP T+ +I
Sbjct: 20 PGGAQAPATTGAAGTAPTAPQPTAAPSI 47
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.9 bits (59), Expect = 4.7
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 295 QAQEEIEILKQTENELNQGKF-KLARMFERIDKEKAELERSISFLKEKETELDEI 348
+E +E + EL Q + + KE++ LE + L + + L+++
Sbjct: 26 AKKERLEEV---NAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 77
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 26.5 bits (58), Expect = 4.9
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 270 DEHIKMSLKSAVEDKIRRKMNEQKVQA 296
+ ++ + K ED+ +R K
Sbjct: 132 ERMVQEAEKYKAEDEKQRDKVSSKNSL 158
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 26.6 bits (58), Expect = 5.8
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 274 KMSLKSAVEDKIRRKMNEQKVQAQEEIEILKQTENELNQGKFKLARMFERIDKEKAELER 333
+MS + +DK ++ +K+ QE I + E+E K++ M + + ++ + R
Sbjct: 39 QMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCM-QDMHQKLSFGPR 97
Query: 334 --SISFLKEKETELDEILAVLTEKTEV-----DVDEAVTTTAPIYKQILNTFTEEAATED 386
+ L+ E L+ I T V D + + + +
Sbjct: 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKI 157
Query: 387 TIYYMGEALRRGV 399
G R
Sbjct: 158 RASNTGAGDRFSS 170
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 25.4 bits (56), Expect = 6.4
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 323 RIDKEKAELERSISFLKEKETELDEILAVLTEK 355
R++ +L + L+E E +LD ++ + T +
Sbjct: 2 RLEGLTQDLRQ----LQESEQQLDHLMNICTTQ 30
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 26.5 bits (57), Expect = 7.1
Identities = 20/144 (13%), Positives = 34/144 (23%), Gaps = 20/144 (13%)
Query: 175 NAPYPTQSYMPMPGSNVNTPYPTYPPSAYPGYNPNAAAAPSG-SIYPSYPTPGA---TPG 230
N +P + Y + N +G + G P
Sbjct: 262 NYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPL 321
Query: 231 AGGYSPYPLYPPGGSTPATPYPVPTPSPAPAVTSGGTITDEHIKM-----------SLKS 279
Y+ Y T + P+ AP S + K SLK
Sbjct: 322 KTLYTVQDTYNYNDPTCGEMTYICWPTVAP---SSAYVYKGGKKAITGWENTLLVPSLKR 378
Query: 280 AVEDKIRRKMNEQKVQAQEEIEIL 303
R K++ ++ +
Sbjct: 379 --GVIFRIKLDPTYSTTYDDAVPM 400
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 26.7 bits (58), Expect = 7.7
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 322 ERIDKEKAELERSISFLKEK------ETELDEILAVLTEKTEVDVDE 362
+++ K+K E E + L + T+L E + D +
Sbjct: 712 QKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 131
Score = 25.3 bits (55), Expect = 8.9
Identities = 15/125 (12%), Positives = 28/125 (22%), Gaps = 13/125 (10%)
Query: 191 VNTPYPTYP-PSAYPGYNPNAAAAPSGSIYPSYPTPGATPGAGGYSPYPLYPPGGSTPAT 249
V P P + A I+ + Y+ LY T
Sbjct: 4 VRLPDVAVPGEAVQAS--ARQAV-----IHLVDIAGITSSTPADYATKNLYLWNNETCDA 56
Query: 250 PYPVPTPSPAPAVTSGGTITDEHIKMSLKSAVEDK----IRRKMNEQKVQAQEEIEILKQ 305
+ T G+ + E I R + + + +
Sbjct: 57 LSAPVADWNDVSTTPTGS-DKYGPYWVIPLTKESGCINVIVRDGTNKLIDSDLRVSFSDF 115
Query: 306 TENEL 310
T+ +
Sbjct: 116 TDRTV 120
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Length = 285
Score = 26.0 bits (57), Expect = 8.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 165 NPTYNGNMASNAPYPTQSYMPMPGSNVNTPY 195
NP + + YP + + P P N NT Y
Sbjct: 178 NPISKAKLDKDGMYPVEIWHPDPAKNENTRY 208
>d1tlya_ f.4.6.1 (A:) Nucleoside-specific channel-forming protein
tsx (NupA) {Escherichia coli [TaxId: 562]}
Length = 267
Score = 26.0 bits (57), Expect = 8.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 167 TYNGNMASNAPYPTQSYMPMPGSNVNTPYPTY 198
Y +M N ++ G++++T P
Sbjct: 99 NYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMS 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.382
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,601,169
Number of extensions: 76423
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 37
Length of query: 434
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,199,356
Effective search space: 414977176
Effective search space used: 414977176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)