BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18021
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHG 43
E +F S DGTK+ ++ + + D+K TL+Y +G
Sbjct: 418 EQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYG 454
>pdb|1ZIY|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (C123s) Bound With The Pms Moiety Of The Protease
Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)- 1.9 A
Length = 236
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZJ4|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride
(Pmsf)- 1.7 A
Length = 236
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFAATSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1DIN|A Chain A, Dienelactone Hydrolase At 2.8 Angstroms
Length = 234
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 156 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 215
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 216 SAAALANERTLDFL 229
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1GGV|A Chain A, Crystal Structure Of The C123s Mutant Of Dienelactone
Hydrolase (Dlh) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)
Length = 232
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSDYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZJ5|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s, A134s, S208g, A229v, K234r) Bound
With The Pms Moiety Of The Protease Inhibitor,
Phenylmethylsulfonyl Fluoride (Pmsf)- 1.7 A
Length = 236
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTGSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 138 KIERVSNPTFFIVGLNDHLVP-PSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT 196
K+ V +P F +G DH VP PS + L Q+ +E H+ S Y
Sbjct: 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTGSSGYVA 214
Query: 197 ISQFLAKAN--DFL 208
+ LA DFL
Sbjct: 215 SAAALANERTLDFL 228
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded
State
Length = 462
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 70 EYRGYGKSQGGAVAIDLLARPEYASKIWC--------LIVENTFTSIPDMALILLKWNVL 121
RG G GG VAID A ++ S + L V++T +S+P I + +L
Sbjct: 148 RVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAML 207
Query: 122 RKMPLFCFKNKFLSHWKIE 140
R+ + + + W++
Sbjct: 208 RQAGV-DIDDSTPNRWQVR 225
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p (Partially Photolyzed)
pdb|2O0D|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p
pdb|2O0E|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p And Pep
pdb|2O0X|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Intermediate
pdb|2O0Z|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Product (Eps)
pdb|2O15|A Chain A, Mycobacterium Tuberculosis Epsp Synthase After Partial
Products Withdrawal
Length = 450
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 70 EYRGYGKSQGGAVAIDLLARPEYASKIWC--------LIVENTFTSIPDMALILLKWNVL 121
RG G GG VAID A ++ S + L V++T +S+P I + +L
Sbjct: 148 RVRGNGSLAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAML 207
Query: 122 RKMPLFCFKNKFLSHWKIE 140
R+ + + + W++
Sbjct: 208 RQAGV-DIDDSTPNRWQVR 225
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 131 NKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
+ +S W + S PTF VG D ++ P +M L + G + +++ E+G H
Sbjct: 227 RQAMSFWSTQ-WSGPTFMAVGAQDPVLGPEVMGMLRQAIRGCPEPMIV-EAGGH 278
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDT 187
K++R+ P V DH+VPP + + K+IV + H T
Sbjct: 200 KLDRIVCPALIFVSDEDHVVPPGNADIIFQGISSTEKEIVRLRNSYHVAT 249
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVL 178
+ V NP F IV + LVP S H GG+L+++ L
Sbjct: 230 VPEVENPLFEIVSTDQQLVPNS-----HGAIGGLLREVGL 264
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVY 40
E +F S DGTK+ ++ + + D K T+ Y
Sbjct: 462 EQVFYPSKDGTKVPMFIVRRKDAKGPLPTLLYGY 495
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,969,673
Number of Sequences: 62578
Number of extensions: 276149
Number of successful extensions: 852
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 19
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)