RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18021
(230 letters)
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 58.9 bits (143), Expect = 3e-11
Identities = 36/175 (20%), Positives = 54/175 (30%), Gaps = 56/175 (32%)
Query: 37 TLVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGY---------------------- 74
+V LHG G+ L S NV+ V+Y G+
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALAS-RGYNVVAVDYPGHGASLGAPDAEAVLADAPLDPER 59
Query: 75 ----GKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFK 130
G S GG VA+ L AR L + ++ D+A
Sbjct: 60 IVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPDALDDLA------------------ 101
Query: 131 NKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHN 185
+++ P I G D +VPP L G ++V+ E H+
Sbjct: 102 ----------KLTVPVLIIHGTRDGVVPPEEAEALAAALPG-PAELVVIEGAGHS 145
>gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General
function prediction only].
Length = 299
Score = 48.2 bits (114), Expect = 9e-07
Identities = 41/248 (16%), Positives = 70/248 (28%), Gaps = 51/248 (20%)
Query: 1 MHGLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHS 60
+HG S + A + G A + G+ A +
Sbjct: 55 LHGF-GSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLL 113
Query: 61 MLKCNVLMVEYRGY--------------------------------------GKSQGGAV 82
+L VL +YR G+S GGA+
Sbjct: 114 LLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGAL 173
Query: 83 AIDLLARPEYASKIWC--LIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIE 140
A+ LL ++ LI F +P L + E
Sbjct: 174 ALLLLGANPELARELIDYLITPGGFAPLPAPEAPLDTLP----LRAVLLLLLDPFDD-AE 228
Query: 141 RVSN-PTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHT--- 196
++S P + G D +VP L+E + K+++ G H D +
Sbjct: 229 KISPRPVLLVHGERDEVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALD 288
Query: 197 -ISQFLAK 203
+++FL +
Sbjct: 289 KLAEFLER 296
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 45.9 bits (109), Expect = 3e-06
Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 45/184 (24%)
Query: 38 LVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQ------------------- 78
+V LHG G+ L + VL + G+G S
Sbjct: 1 VVLLHGAGGSAESWRPLAEALAA--GYRVLAPDLPGHGDSDGPPRTPYSLEDDAADLAAL 58
Query: 79 ----------------GGAVAIDLLAR-PEYASKIWCLIVENTFTSIPDMALILLKWNVL 121
GGAVA+ AR PE + L++ + + L +L
Sbjct: 59 LDALGLGPVVLVGHSLGGAVALAAAARRPERVAG---LVLISPPLRDLEELLAADAAALL 115
Query: 122 RKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFES 181
+ R++ P I G +D LVPP +L E G ++V+
Sbjct: 116 ALLRAALLDADLREALA--RLTVPVLVIHGEDDPLVPPEAARRLAEALPG--AELVVLPG 171
Query: 182 GSHN 185
H
Sbjct: 172 AGHL 175
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 36.7 bits (85), Expect = 0.008
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 5 PYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHG-------NAGNIGHRLHNVAG 57
E + KS DG IH + P + + +VY+HG + N ++ AG
Sbjct: 364 EPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAG 423
Query: 58 LHSMLKCNVLMVEYR---GYGKSQGGAV 82
VL YR GYG+ A+
Sbjct: 424 Y------AVLAPNYRGSTGYGREFADAI 445
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 33.1 bits (76), Expect = 0.091
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
++++ +PT + G D +VP ++++ K++ E H
Sbjct: 177 LDKIYSPTLVVQGRQDEMVPAESANFIYDHVESDDKELKWLEGSGH 222
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 31.0 bits (70), Expect = 0.38
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
++ + PT I G +D LVPP KL Q+V+ + H
Sbjct: 167 LKDIDVPTLIIWGDDDPLVPPDASEKLAALFPN--AQLVVIDDAGH 210
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only].
Length = 282
Score = 30.8 bits (68), Expect = 0.58
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 37 TLVYLHGNAGNIGHRLHNVAGLHSMLK-CNVLMVEYRGYGKSQGGAVAIDLLAR 89
LV LHG G+ L ++ V+ + RG+G+S ++ A
Sbjct: 23 PLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYAD 76
Score = 30.0 bits (66), Expect = 0.95
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDTW 188
PT I G +D +VP + +L ++V+ H
Sbjct: 223 PTLIIHGEDDPVVPAELARRLAAALPN-DARLVVIPGAGHFPHL 265
>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family
consists of several bacterial acetyl xylan esterase
proteins. Acetyl xylan esterases are enzymes that
hydrolyse the ester linkages of the acetyl groups in
position 2 and/or 3 of the xylose moieties of natural
acetylated xylan from hardwood. These enzymes are one of
the accessory enzymes which are part of the xylanolytic
system, together with xylanases, beta-xylosidases,
alpha-arabinofuranosidases and methylglucuronidases;
these are all required for the complete hydrolysis of
xylan.
Length = 319
Score = 29.6 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 120 VLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPS 160
V R + KN L+H R+ P VGL D + PPS
Sbjct: 244 VFRTLSYIDIKN--LAH----RIKGPVLMSVGLMDQVCPPS 278
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 30.1 bits (68), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHG 43
E F S DGT+I YFI + K E TL+Y +G
Sbjct: 395 EQFFATSKDGTRIP-YFIVRKGAKKD-ENPTLLYAYG 429
>gnl|CDD|227592 COG5267, COG5267, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 496
Score = 29.4 bits (66), Expect = 1.5
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 26 QPDVK--AKCET-MTLVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQGGAV 82
Q DV A+ T T+ G+IG + N A H VL Y G QG A
Sbjct: 252 QADVTELARILTGWTVAREEDRDGDIGPFVFN-AQAHEPGDKTVLGRTYASAGMYQGAAA 310
Query: 83 AIDLLARPEYASKIWCLIVENTFTSIPDMALI 114
DL A P A I + + + P AL+
Sbjct: 311 LDDLAAHPNTARHIATKLARHFVSDDPPPALV 342
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 28.9 bits (65), Expect = 2.1
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 86 LLARPEYASKIWCLIVENTFTSIPDMALILLKWN-----VLRKMPLFCFKNKFLSH---- 136
L RP IW V N + LL WN + +N +L +
Sbjct: 257 FLLRPNDL--IWNYFVNNYLDGEQPLPFDLLYWNADSTRLPGAAHSEYLRNFYLENRLIR 314
Query: 137 --WKIE-------RVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESG 182
++ ++ P + + DH+ P S + GG VL SG
Sbjct: 315 GGLEVSGTMVDLGDITCPVYNLAAEEDHIAPWSSVYLGARLLGG-EVTFVLSRSG 368
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 141 RVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ P+ ++G D +VP KL E
Sbjct: 156 PIQTPSLHVIGELDTVVPEERSEKLAE 182
>gnl|CDD|238350 cd00645, AsnA, Asparagine synthetase (aspartate-ammonia ligase)
(AsnA) catalyses the conversion of L-aspartate to
L-asparagine in the presence of ATP and ammonia. AsnA
is a homodimeric enzyme which is structurally similiar
to the catalytic core domain of class II aminoacyl-tRNA
synthetases. Ammonia-dependent AsnA is not homologous to
the glutamine-dependent asparagine synthetase AsnB.
Length = 309
Score = 28.5 bits (64), Expect = 3.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 129 FKNKFLSHWKIERVSNPTFFIV--GLNDHL 156
F++ + RVS P F GLND+L
Sbjct: 11 FQDNLAKELNLIRVSAPLFVEKGSGLNDNL 40
>gnl|CDD|221442 pfam12146, Hydrolase_4, Putative lysophospholipase. This domain
is found in bacteria and eukaryotes and is
approximately 110 amino acids in length. It is found in
association with pfam00561. Many members are annotated
as being lysophospholipases, and others as alpha-beta
hydrolase fold-containing proteins.
Length = 80
Score = 26.4 bits (59), Expect = 3.9
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 16 GTKIHLYFIP--QPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLKCN--VLMVEY 71
G K+ P KA +V +HG + G R +A + V ++
Sbjct: 1 GLKLFYRRWLPAGPPPKA-----VVVLVHGGGEHSG-RYAELA--EELAAQGYAVYAYDH 52
Query: 72 RGYGKSQG 79
RG+G+S G
Sbjct: 53 RGHGRSPG 60
>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit. This
model describes the ATP synthase delta subunit in
bacteria, mitochondria, and chloroplasts. It is
sometimes called OSCP for Oligomycin Sensitivity
Conferring Protein. F1/F0-ATP synthase is a
multisubunit, membrane associated enzyme found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is principally
involved in the synthesis of ATP from ADP and inorganic
phosphate by coupling the energy derived from the proton
electrochemical gradient across the biological membrane.
A brief description of this multisubunit enzyme complex:
F1 and F0 represent two major clusters of subunits.
Delta subunit belongs to the F1 cluster or sector and
functionally implicated in the overall stability of the
complex. Expression of truncated forms of this subunit
results in low ATPase activity [Energy metabolism,
ATP-proton motive force interconversion].
Length = 172
Score = 27.7 bits (62), Expect = 4.2
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 88 ARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTF 147
ARP YA ++ + E + L +K VL+ KFLS+ I F
Sbjct: 2 ARP-YAKALFEIANEKSSLEEWGEMLNFVK-EVLKNNKEL---KKFLSNPLISAEKKKEF 56
Query: 148 FIVGLNDHL 156
+ L
Sbjct: 57 IKNVFGEQL 65
>gnl|CDD|221097 pfam11369, DUF3160, Protein of unknown function (DUF3160). This
family of proteins has no known function.
Length = 637
Score = 27.8 bits (62), Expect = 5.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 140 ERVSNPTFFIVGLNDHLVPPSMMVKLHENSGG 171
+RV +PT F VGL+D L P L GG
Sbjct: 234 DRVYDPTAFYVGLSDDLGPYEYAEALKSVFGG 265
>gnl|CDD|227558 COG5233, GRH1, Peripheral Golgi membrane protein [Intracellular
trafficking and secretion].
Length = 417
Score = 27.4 bits (60), Expect = 6.3
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 157 VPPSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYY----HTISQFLAKANDFLPTPP 212
+P S K E+ G + + + H + +C + S + L PP
Sbjct: 340 LPLSFYGKKSEHKSGTQRAVT---TSYHEENGECPLCFKHEEKDRSSESSGEYTPLAPPP 396
Query: 213 STSVASSSNSSMSD 226
S S SSS++ +SD
Sbjct: 397 SLSSISSSDAGISD 410
>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase.
This clade of the pfam00155 superfamily of
aminotransferases includes several which are adjacent
to elements of the lysine biosynthesis via
diaminopimelate pathway (GenProp0125). This clade
includes characterized species in plants and Chlamydia.
Every member of this clade is from a genome which
possesses most of the lysine biosynthesis pathway but
lacks any of the known succinylases, desuccinylases,
acetylases or deacetylases typical of the acylated
versions of this pathway nor do they have the direct,
NADPH-dependent enzyme (ddh).
Length = 402
Score = 27.4 bits (61), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 71 YRGYGKSQGGAVAIDLLARPEYASKI 96
+RGYG QG + +A +Y +I
Sbjct: 68 FRGYGPEQGYPFLREAIAENDYRGRI 93
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 27.1 bits (61), Expect = 8.0
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 174 KQIVLFESGSHNDTWKC-----SGYYHTISQFLAKANDFLPTPPS 213
+ + F +G H DT+ G +H + + L F+P PP
Sbjct: 124 TRFLAFRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPC 168
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part
of an alpha/beta hydrolase domain.
Length = 62
Score = 25.2 bits (56), Expect = 8.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 2 HGLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYL-HG 43
+G P E V + DG + L+ IP +V L HG
Sbjct: 8 YGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHG 50
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 26.7 bits (59), Expect = 9.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 209 PTPPSTSVASSSNSSMSDIKC 229
PTP S A + SS +K
Sbjct: 182 PTPASPPPAKAPKSSHPPLKS 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,557,122
Number of extensions: 1071431
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 29
Length of query: 230
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 136
Effective length of database: 6,768,326
Effective search space: 920492336
Effective search space used: 920492336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)