RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18021
(230 letters)
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 67.4 bits (164), Expect = 6e-14
Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 26/199 (13%)
Query: 2 HGLPYESIFVKSLDGTKIH-LYFIPQPDVKAKCETMTLVYLH-----GNAGNIGHRLHNV 55
+ + E ++ G ++ + P+ K+ T + H G N
Sbjct: 2 YVMTNEDFLIQGPVG-QLEVMITRPKGIEKSV----TGIICHPHPLHGGTMNNKVVTTLA 56
Query: 56 AGLHSMLKCNVLMVEYRGYGKSQG----------GAVAIDLLARPEYASKIWCLIVENTF 105
L + + +RG GKSQG A+ ++ L +
Sbjct: 57 KALDEL-GLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSFG 115
Query: 106 TSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKL 165
I + + + ++ + + ++++P + G D +VP +
Sbjct: 116 AYI---SAKVAYDQKVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAF 172
Query: 166 HENSGGILKQIVLFESGSH 184
+ V+ SH
Sbjct: 173 VNQISS-PVEFVVMSGASH 190
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 68.1 bits (166), Expect = 8e-14
Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 68/237 (28%)
Query: 11 VKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVE 70
++ +G ++H++ P P + T++ G A + H L + +V +
Sbjct: 12 LRVNNGQELHVWETP-PKENVPFKNNTILIASGFARRMDHFAGLAEYLSTN-GFHVFRYD 69
Query: 71 YRGY--------------------------------------GKSQGGAVAIDLLARPEY 92
+ S VA ++++
Sbjct: 70 SLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVISDL-- 127
Query: 93 ASKIWCLIVENTFTSIPDMALILLKWNVLRK----------------MPLFCFKNKFLSH 136
++ LI ++ D L ++ L ++ F H
Sbjct: 128 --ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH 185
Query: 137 W--------KIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHN 185
W K+ S P ND V + + + ++ SH+
Sbjct: 186 WDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYSLLGSSHD 242
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 59.1 bits (143), Expect = 1e-10
Identities = 30/248 (12%), Positives = 60/248 (24%), Gaps = 64/248 (25%)
Query: 6 YESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLKCN 65
SI + ++ + P ++++HG G+ H L L C
Sbjct: 6 LSSIEIPV-GQDELSGTLLT-PTGMP-----GVLFVHGWGGSQHHSLVRAREAVG-LGCI 57
Query: 66 VLMVEYRGYGK----------------------------------------SQGGAVAID 85
+ + RG+ S GG ++
Sbjct: 58 CMTFDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSAL 117
Query: 86 LLARPEYASKIWCLIVENTFTSIPDMALILLKWNV-------LRKMPLFCFKNKFLSHWK 138
L + L + + R+ L N L+
Sbjct: 118 LTRE----RPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAA-- 171
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHEN-SGGILKQIVLFESGSHNDTWKCSG--YYH 195
+ + ND +VP +M + + + H + K Y
Sbjct: 172 CAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNARSLTSRVIAGADHALSVKEHQQEYTR 231
Query: 196 TISQFLAK 203
+ +L +
Sbjct: 232 ALIDWLTE 239
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 53.0 bits (127), Expect = 4e-09
Identities = 21/177 (11%), Positives = 55/177 (31%), Gaps = 15/177 (8%)
Query: 36 MTLVYLHG-NAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQGGAVAIDLLARPEYA- 93
+ HG +G ++ +A + L ++ + D+ R +
Sbjct: 5 GHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLL 64
Query: 94 -------SKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPT 146
K ++ ++ S +A + R + L K ++ + P
Sbjct: 65 EIARAATEKGPVVLAGSSLGSY--IAAQVSLQVPTRALFLMVPPTKMGPLPALDAAAVPI 122
Query: 147 FFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDTWKCSGYYHTISQFLAK 203
+ +D L+P + ++ + +++L + G H ++ L
Sbjct: 123 SIVHAWHDELIPAADVIAWAQARSA---RLLLVDDG-HRLGAHVQAASRAFAELLQS 175
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 52.5 bits (126), Expect = 3e-08
Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 27/148 (18%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNV-LRKMPLFCFKNK 132
G SQGG +++ A ++ ++ E F S D + + +
Sbjct: 205 MGPSQGGGLSLACAAL---EPRVRKVVSEYPFLS--DYKRVWDLDLAKNAYQEITDYFRL 259
Query: 133 FLSHWK-----------------IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQ 175
F + +R+ VGL D + PPS + + N K
Sbjct: 260 FDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQSK-KD 318
Query: 176 IVLFESGSHNDTWKCSGYYHTISQFLAK 203
I ++ H G+ QF+ +
Sbjct: 319 IKVYPDYGHEPM---RGFGDLAMQFMLE 343
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 51.8 bits (123), Expect = 3e-08
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 29/234 (12%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNV----AGLHSML 62
+ G ++ + P + A + LH + G + + L
Sbjct: 24 PEVIFNGPAG-RLEGRYQPSKEKSAP----IAIILHPHPQFGGTMNNQIVYQLFYLFQKR 78
Query: 63 KCNVLMVEYRGYGKSQGG------------AVAIDLLARPEYASKIWCLIVENTFTSIPD 110
L +R G+SQG + + + + W +F +
Sbjct: 79 GFTTLRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGY--SFGAWIG 136
Query: 111 MALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHE--- 167
M L++ + + M + N + + + I G D + P + L E
Sbjct: 137 MQLLMRRPEIEGFMSIAPQPNTY-DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLK 195
Query: 168 NSGGILKQIVLFESGSHNDTWKCSGYYHTISQFLAK--ANDFLPTPPSTSVASS 219
GIL +H K +L + + +P P + + S
Sbjct: 196 TQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIRGS 249
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY
diffraction; 1.60A {Xanthomonas campestris} SCOP:
c.69.1.36
Length = 220
Score = 50.7 bits (120), Expect = 5e-08
Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 26/221 (11%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNV----AGLHSML 62
++ + G +P+PDV + +T + H + G + V A L
Sbjct: 11 AALTLDGPVGPLDVAVDLPEPDVAVQ--PVTAIVCHPLSTEGGSMHNKVVTMAARALREL 68
Query: 63 KCNVLMVEYRGYGKSQG-----------GAVAIDLLARPEYASKIWCLIVENTFTSIPDM 111
V+ +R G S G + + +W S
Sbjct: 69 GITVVRFNFRSVGTSAGSFDHGDGEQDDLRAVAEWVRAQRPTDTLWL-----AGFSFGAY 123
Query: 112 ALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGG 171
+ + ++ + + + I G D +V P + E
Sbjct: 124 VSLRAAAALEPQVLISIAPPAGRWDFSDVQPPAQWLVIQGDADEIVDPQAVYDWLETLEQ 183
Query: 172 ILKQIVLFESGSHNDTWKCSGYYHTISQFLAKANDFLPTPP 212
+V SH K + + + +LP P
Sbjct: 184 -QPTLVRMPDTSHFFHRKLIDLRGALQHGVRR---WLPATP 220
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 47.9 bits (114), Expect = 6e-07
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 28/136 (20%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVL------------ 121
G S GG + + L I ++ N IP +A + L
Sbjct: 114 TGLSMGGTLTLYLAEHHP---DICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLK 170
Query: 122 ---------RKMPLFCFK--NKFLSH--WKIERVSNPTFFIVGLNDHLVPPSMMVKLHEN 168
K P + ++ K++R+ P V DH+VPP + +
Sbjct: 171 NPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQG 230
Query: 169 SGGILKQIVLFESGSH 184
K+IV + H
Sbjct: 231 ISSTEKEIVRLRNSYH 246
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 46.9 bits (111), Expect = 2e-06
Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 62/230 (26%)
Query: 5 PYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLKC 64
P E + DG + +Y ++ L G + L
Sbjct: 126 PAERHELVV-DGIPMPVYVRIPEGPGPH---PAVIMLGGLEST-KEESFQMENLVLDRGM 180
Query: 65 NVLMVEYRG--------------------------------------YGKSQGGAVAIDL 86
+ G G+S GG A+
Sbjct: 181 ATATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKS 240
Query: 87 LARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWK-------- 138
A ++ I ++ D+ L+ + ++ + K L +
Sbjct: 241 AAC---EPRLAACI---SWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALE 294
Query: 139 ----IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
+ +++ PT+ + G++D VP S + + E +V+ + G H
Sbjct: 295 TRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEHLNLVVEKDGDH 343
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 46.2 bits (109), Expect = 3e-06
Identities = 39/273 (14%), Positives = 77/273 (28%), Gaps = 77/273 (28%)
Query: 3 GLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSML 62
+P +SI V +G + Y I D TL+ + G + + +
Sbjct: 132 KIPLKSIEVPF-EGELLPGYAIISEDKAQD----TLIVVGGGDTSREDLFYMLGYSGWEH 186
Query: 63 KCNVLMVEYRGYGKSQGGAV------------AIDLL-ARPE------------------ 91
NVLMV+ G GK+ + +D A E
Sbjct: 187 DYNVLMVDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAV 246
Query: 92 -YASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLS-------------HW 137
+I I + ++ I + + + +K ++ W
Sbjct: 247 EKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAW 306
Query: 138 K---------------------IERVSNPTFFIVGLNDHLVPPSMMVKLHEN--SGGILK 174
+ ++ P+ F+VG + L++N GI
Sbjct: 307 QFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDV 366
Query: 175 QIVLFES----GSHNDTWKCSGYYHTISQFLAK 203
+ F S +H ++ + ++L
Sbjct: 367 TLRKFSSESGADAHCQVNNFRLMHYQVFEWLNH 399
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 44.1 bits (104), Expect = 2e-05
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKN-- 131
G SQGG +A+ + A + K L+ + F A+ L+ + ++ F +
Sbjct: 197 AGGSQGGGIALAVSAL---SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD 253
Query: 132 ------KFLSHWK----IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFES 181
+ LS++ R P F VGL D++ PPS + + G K+I ++
Sbjct: 254 KEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG-PKEIRIYPY 312
Query: 182 GSH 184
+H
Sbjct: 313 NNH 315
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 42.8 bits (101), Expect = 3e-05
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHN 185
++ + PTF + +D ++ P ++ +KQI +E H
Sbjct: 177 HLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHV 224
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 41.2 bits (97), Expect = 9e-05
Identities = 36/253 (14%), Positives = 72/253 (28%), Gaps = 63/253 (24%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGN-IGHRLHNVAGLHSMLKCN 65
++++ DG K++ Y + K + +HG G+ + V + +
Sbjct: 2 GAMYIDC-DGIKLNAYLDMPKNNPEK--CPLCIIIHGFTGHSEERHIVAVQETLNEIGVA 58
Query: 66 VLMVEYRGYGK--------------------------------------SQGGAVAIDLL 87
L + G+GK SQGG +L
Sbjct: 59 TLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSV--ML 116
Query: 88 ARPEYASKIWCLIVENTFTSIPDMALILLK----------WNVLRKMPLFCFKNKFLSHW 137
A I LI + IP++A + L K ++
Sbjct: 117 AAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVA 176
Query: 138 K-------IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDTWKC 190
+ +++ + P + G D VP V + ++V +H
Sbjct: 177 QTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKN--CKLVTIPGDTHCYDHHL 234
Query: 191 SGYYHTISQFLAK 203
+ +F+ +
Sbjct: 235 ELVTEAVKEFMLE 247
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 41.3 bits (97), Expect = 1e-04
Identities = 36/257 (14%), Positives = 72/257 (28%), Gaps = 65/257 (25%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGN-IGHRLHNVAGLHSMLKCN 65
+I ++ DG ++ +P + + HG N L +A
Sbjct: 23 ATITLER-DGLQLV-GTREEPFGEIY---DMAIIFHGFTANRNTSLLREIANSLRDENIA 77
Query: 66 VLMVEYRGYGK--------------------------------------SQGGAVAIDLL 87
+ ++ G+G +QGG VA +
Sbjct: 78 SVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVA--SM 135
Query: 88 ARPEYASKIWCLIVENTFTSIPDMAL-------ILLKWNVLRKMPL--FCFKNKFLSHWK 138
Y I +++ ++ AL ++ ++P +L +
Sbjct: 136 LAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQ 195
Query: 139 -------IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDTWK-C 190
+ + P I G +D +V P+ K + + L E H +
Sbjct: 196 QLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN--STLHLIEGADHCFSDSYQ 253
Query: 191 SGYYHTISQFLAKANDF 207
+ + FL N F
Sbjct: 254 KNAVNLTTDFLQNNNAF 270
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 41.0 bits (96), Expect = 1e-04
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 18/129 (13%)
Query: 74 YGKSQGGAVAIDLLAR-PEYASKIWCL--IVENTFTSIPDMALILLKWNVL--------- 121
+G S GG A+ L P + I+ +P N L
Sbjct: 98 FGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQ 157
Query: 122 ----RKMPLFCF-KNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGG-ILKQ 175
L + + V PTF D LV + +L +
Sbjct: 158 ILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINAARVD 217
Query: 176 IVLFESGSH 184
++ H
Sbjct: 218 FHWYDDAKH 226
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 40.8 bits (96), Expect = 2e-04
Identities = 36/267 (13%), Positives = 70/267 (26%), Gaps = 91/267 (34%)
Query: 1 MHGLPYESI-FVKSLDGTKIHLY-FIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGL 58
+PY+ + + + DG + + P KA + HG + G R +A +
Sbjct: 29 PQSIPYQDLPHLVNADGQYLFCRYWKPTGTPKA-----LIFVSHGAGEHSG-RYEELARM 82
Query: 59 HSMLKCNVLMVEYRGYGKSQ---------------------------------------G 79
L V ++ G+G+S+ G
Sbjct: 83 LMGLDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMG 142
Query: 80 GAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLR-------KMPLFCFKNK 132
GA+AI A +++ + + K + + L +
Sbjct: 143 GAIAILTAAE--RPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSS 200
Query: 133 FLSH-----------------------------------WKIERVSNPTFFIVGLNDHLV 157
LS + +++ P + G D L
Sbjct: 201 VLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLC 260
Query: 158 PPSMMVKLHENSGGILKQIVLFESGSH 184
L E + K + ++E H
Sbjct: 261 DSKGAYLLMELAKSQDKTLKIYEGAYH 287
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 40.1 bits (93), Expect = 2e-04
Identities = 29/180 (16%), Positives = 46/180 (25%), Gaps = 58/180 (32%)
Query: 37 TLVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQG----------------- 79
L+ LHG G+ H L + G +L + +G+ +G
Sbjct: 26 LLLALHGLQGSKEHILALLPGYAER-GFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRV 84
Query: 80 -------------------------------GAVAIDLLARPEYASKIWCLIVENTFTSI 108
VA LLA + I +
Sbjct: 85 ALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL 144
Query: 109 PDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSN-PTFFIVGLNDHLVPPSMMVKLHE 167
P ++ P + + E P + G DH+VP + M K E
Sbjct: 145 PQGQVVED--------PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLE 196
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 39.2 bits (91), Expect = 7e-04
Identities = 24/242 (9%), Positives = 48/242 (19%), Gaps = 67/242 (27%)
Query: 2 HGLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSM 61
+ + + + KI + K ++ G +
Sbjct: 164 SKYIIKQLEIPF-EKGKITAHLHLTNTDKPH---PVVIVSAGLDSLQTDMWRLFRDHLAK 219
Query: 62 LKCNVLMVEYRG-------------------------------------YGKSQGGAVAI 84
+L V+ G GG +
Sbjct: 220 HDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMV 279
Query: 85 DLLARPEYASKIWCLIV-----------ENTFTSIPDMALILLKWN----------VLRK 123
L KI ++ +P M L +L + +
Sbjct: 280 RLSFL--EQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQ 337
Query: 124 MPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGS 183
M + K + + P + D + P S + S K +
Sbjct: 338 MAAWSLKVQGFLS--SRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYG-KAKKISSKTI 394
Query: 184 HN 185
Sbjct: 395 TQ 396
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 38.4 bits (90), Expect = 0.001
Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 91/267 (34%)
Query: 1 MHGLPY-ESIFVKSLDGTKIHLY-FIPQPDVKAKCETMTLVYLHG--------------- 43
+PY + + + DG + + P KA + HG
Sbjct: 11 PQSIPYQDLPHLVNADGQYLFCRYWAPTGTPKA-----LIFVSHGAGEHSGRYEELARML 65
Query: 44 -NAG-------NIGH------RLHNVAGLHSMLK-----CNVLMVEYRG-----YGKSQG 79
++GH R+ V+ H ++ + + +Y G G S G
Sbjct: 66 MGLDLLVFAHDHVGHGQSEGERMV-VSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMG 124
Query: 80 GAVAIDLLARPEYASKIWCLIVENTF-----TSIPDMALILLKW--NVLRKMPLFCFKNK 132
GA+AI A +++ + S ++ K +VL + +
Sbjct: 125 GAIAILTAAE--RPGHFAGMVLISPLVLANPESATTFKVLAAKVLNSVLPNLSSGPIDSS 182
Query: 133 FLSH-----------------------------------WKIERVSNPTFFIVGLNDHLV 157
LS + +++ P + G D L
Sbjct: 183 VLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLC 242
Query: 158 PPSMMVKLHENSGGILKQIVLFESGSH 184
L E + K + ++E H
Sbjct: 243 DSKGAYLLMELAKSQDKTLKIYEGAYH 269
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 37.4 bits (87), Expect = 0.002
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 25/146 (17%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKF 133
G SQGG + I A + + + + S + + + + F +
Sbjct: 178 TGGSQGGGLTIAAAA---LSDIPKAAVADYPYLS--NFERAIDVALEQPYLEINSFFRRN 232
Query: 134 LSHWKIE----------------RVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIV 177
S RV P +GL D + PPS + + + K++
Sbjct: 233 GSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET-KKELK 291
Query: 178 LFESGSHNDTWKCSGYYHTISQFLAK 203
++ H + F +
Sbjct: 292 VYRYFGH---EYIPAFQTEKLAFFKQ 314
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 36.9 bits (86), Expect = 0.003
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 42/145 (28%)
Query: 75 GKSQGGAVAIDLLAR-PEYASKIWCLIVENTFTSIPDMALI-------LLKW--NVLRKM 124
G S GG A+ A+ P Y K +++ + D + + KW + +
Sbjct: 100 GWSDGGITALIAAAKYPSYIHK---MVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPL 156
Query: 125 PLFCFKNKFLSHWK---------------------IERVSNPTFFIVGLNDHLVPPSMMV 163
+ F + + RV P + G D LVP
Sbjct: 157 EALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHAD 216
Query: 164 KLHE---NSGGILKQIVLFESGSHN 185
+H+ S ++ L G HN
Sbjct: 217 FIHKHVKGS-----RLHLMPEGKHN 236
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 36.5 bits (85), Expect = 0.004
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 40/145 (27%)
Query: 75 GKSQGGAVAIDLLAR-PEYASKIWCLI-----VENTFTSIPDMALILLKWNVLRKMPLFC 128
G S GGA+ + + + K+ + + + N +
Sbjct: 90 GYSMGGAIVLGVALKKLPNVRKV-VSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGG 148
Query: 129 FKNKFLSHWK-------------------------IERVSNPTFFIVGLNDHLVPPSMMV 163
N + ++ + P IV ++ L
Sbjct: 149 IDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSE 208
Query: 164 KLHE---NSGGILKQIVLFESGSHN 185
+ + NS ++ +FE+G H
Sbjct: 209 IIKKEVENS-----ELKIFETGKHF 228
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 36.7 bits (84), Expect = 0.005
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 33/138 (23%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKF 133
G S+GG + L+ + I +V N + L ++ P+ +N+
Sbjct: 246 LGISKGGELC---LSMASFLKGITAAVVINGSVANVGGTL---RYKGETLPPVGVNRNRI 299
Query: 134 LSHW-----------------------KIERVSNPTFFIVGLNDHLVPPS----MMVKLH 166
+ER + F+VG +DH K
Sbjct: 300 KVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRL 359
Query: 167 ENSGGILKQIVLFESGSH 184
+ G QI+ + H
Sbjct: 360 QAHGRRKPQIICYPETGH 377
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 34.1 bits (78), Expect = 0.020
Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 3 GLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGH-RLHNVAGLHSM 61
G+ + F+ ++GT++ D + ++ HG + ++ +S
Sbjct: 1 GMALQEEFI-DVNGTRVF-QRKMVTDSNRR----SIALFHGYSFTSMDWDKADLFNNYSK 54
Query: 62 LKCNVLMVEYRGYGKSQGGAVAIDLLARPE-YASKIWCLI----VENTFTSIPDM----- 111
+ NV +Y G+G+S + A I + V + M
Sbjct: 55 IGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIMGASMGGGMV 114
Query: 112 ALILLKW-NVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ L++ +++ + ++++ T + G DH+VP ++ +
Sbjct: 115 IMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYAS 171
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 34.0 bits (78), Expect = 0.025
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHE--NSGGILKQIVLFESGSH-------NDTWKCSGYYH 195
PTF +D VP +K + + + + FESG H +
Sbjct: 190 PTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRTTAPSDAYCLP 249
Query: 196 TISQFLAKANDFL 208
++ ++++ A+D+L
Sbjct: 250 SVHRWVSWASDWL 262
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 33.6 bits (76), Expect = 0.040
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 21/132 (15%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIP----DMALILLKWNVLRKMPLFCF 129
G S G + + + + + S + + ++ L +++ R F
Sbjct: 230 LGISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSG 289
Query: 130 KNKFLSHW-------------KIERVSNPTFFIVGLNDHLVPPS----MMVKLHENSGGI 172
+ IE+ P IVG +DH + + + G
Sbjct: 290 LVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKE 349
Query: 173 LKQIVLFESGSH 184
QI+ + H
Sbjct: 350 KPQIICYPGTGH 361
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 33.5 bits (76), Expect = 0.047
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHE--NSGGILKQIVLFESGSHNDTWKCSGYYHTISQFL 201
+ +D L+ L + ++ L + G HND +K I +
Sbjct: 214 DMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKYIFDNI 272
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 32.7 bits (75), Expect = 0.072
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 104 TFTSIPDMALILLKWNVLRKMPLFC--FKNKFLSHW----KIERVSNPTFFIVGLNDHLV 157
+F S + L N + + F+ + K++ V P+F G +D
Sbjct: 176 SFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQC 235
Query: 158 PPSMMVKLHE---NSGGILKQIVLFESGSHN 185
P ++ N+ + FE +HN
Sbjct: 236 PYIFSCEIANLIPNA-----TLTKFEESNHN 261
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 32.8 bits (74), Expect = 0.092
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 116 LKWNVLRKMPLFCFKNKFLSHWK----IERVSNPTFFIVGLNDHLVPPSMMVKLHENSGG 171
++ + + L C+ N ++ V T IVG + PP + L +
Sbjct: 253 VRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQN 312
Query: 172 ILKQIVLFESGSH 184
+ + GSH
Sbjct: 313 Y--HLDVIPGGSH 323
Score = 27.8 bits (61), Expect = 3.6
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 37 TLVYLHGNAGN------IGHRLHNVAGLHSMLKCNVLMVEYRGYGKS 77
LV+LHG+ + RL + VL+++ +G S
Sbjct: 54 NLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDS 100
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 32.4 bits (73), Expect = 0.094
Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 5/76 (6%)
Query: 6 YESIFVKSLDGTKI--HLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLK 63
+ + + G + LY P + +V A +
Sbjct: 68 HRKVTFANRYGITLAADLYL---PKNRGGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERG 124
Query: 64 CNVLMVEYRGYGKSQG 79
L + G+S G
Sbjct: 125 FVTLAFDPSYTGESGG 140
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 32.2 bits (72), Expect = 0.096
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKF 133
G SQG A++ + + F ++ KF
Sbjct: 107 VGLSQGAALSSIITNKISELVPDHP-----QFKVSVVISGYSFTEPDPEHPGELRITEKF 161
Query: 134 LSHWKIE-RVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ ++ + FI G +D VP L++
Sbjct: 162 RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYD 196
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 32.5 bits (74), Expect = 0.10
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 134 LSHWKIERVSNPTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
L+ +RV P + GL D + PP + + G+ + FE H
Sbjct: 575 LTR--ADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGC--GVPHAYLSFEGEGH 625
Score = 29.4 bits (66), Expect = 1.1
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 7 ESIFVKSLDGTKIHLYFIP--QPDVKAKCETM--TLVYLHGN-AGNIGHRLHNVAGLHSM 61
+ + DG +IH + P PD + + +V HG + L +
Sbjct: 392 QIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTS 451
Query: 62 LKCNVLMVEYRG---YGKS 77
V V Y G YG++
Sbjct: 452 RGIGVADVNYGGSTGYGRA 470
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 32.0 bits (73), Expect = 0.12
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 1 MHGLPYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHS 60
+ +P S V D + A+ + L+ LHG G + + N+A L
Sbjct: 23 LSRMPVSSRTVPFGDH---ETWVQVTTPENAQPHALPLIVLHGGPGMAHNYVANIAALAD 79
Query: 61 MLKCNVLMVEYRGYGKS 77
V+ + G G S
Sbjct: 80 ETGRTVIHYDQVGCGNS 96
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 32.1 bits (73), Expect = 0.12
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 145 PTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
PTF +D +VP + L I ++ +F+ G H
Sbjct: 207 PTFIWTTADDPIVPATNTLAYATALATA--KIPYELHVFKHGPH 248
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 31.7 bits (72), Expect = 0.16
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHE--NSGGILKQIVLFESGSH 184
P F D VPP +K + + LF SG H
Sbjct: 193 PAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIH 234
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 31.6 bits (72), Expect = 0.17
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHE---NSGGILKQIVLFESGSHN 185
P +VG ND +V +KL N +IVL HN
Sbjct: 210 PFKIMVGRNDQVVGYQEQLKLINHNENG-----EIVLLNRTGHN 248
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 31.5 bits (71), Expect = 0.20
Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 11/148 (7%)
Query: 38 LVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQGGAVAIDLLARPEYASKIW 97
V+L + H V ++ ++ + + P++ +
Sbjct: 101 AVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPKFLAHKL 160
Query: 98 CLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERV-SNPTFFIVGLNDHL 156
+ L L +++R LF ++ ER S +IV D
Sbjct: 161 YQLC-------SPEDLALA-SSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKG 212
Query: 157 VPPSMMVKLHENSGGILKQIVLFESGSH 184
+P +N G + + + H
Sbjct: 213 IPEEFQRWQIDNIGV--TEAIEIKGADH 238
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 31.7 bits (72), Expect = 0.22
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 134 LSHWKIERVSNPTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
++H ++R+ P I N P +M +L G + + H
Sbjct: 506 INH--VDRIKEPLALIHPQNASRTPLKPLLRLMGELLAR--GKTFEAHIIPDAGH 556
Score = 29.4 bits (66), Expect = 1.2
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 7 ESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVAGLHSMLKC-- 64
++V+S DG+++ Y + T+V +HG G + +
Sbjct: 334 RLVWVESFDGSRVPTYVLESGRAPTPGP--TVVLVHG-----GPFAEDSDSWDTFAASLA 386
Query: 65 ----NVLMVEYRG---YGKS 77
+V+M YRG YG+
Sbjct: 387 AAGFHVVMPNYRGSTGYGEE 406
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 30.7 bits (70), Expect = 0.31
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 141 RVSNPTFFIVGLNDHLVPPSMMVKLHE---NSGGILKQIVLFESGSH 184
VS P + G D LVP ++ L + +S + +F +H
Sbjct: 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHS-----ESYIFAKAAH 235
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 30.3 bits (69), Expect = 0.40
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ P I G +D P+ +L +
Sbjct: 202 APGIKVPALVISGTHDLAATPAQGRELAQ 230
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 30.3 bits (68), Expect = 0.40
Identities = 17/148 (11%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 38 LVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQGGAVAIDLLARPEYASKIW 97
LV+L+ + H +V + + + E+ + G + + P++
Sbjct: 101 LVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKM--GPKFMKARL 158
Query: 98 CLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSN-PTFFIVGLNDHL 156
+ L + R+ F + E + +++ D
Sbjct: 159 YQNC--------PIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKA 210
Query: 157 VPPSMMVKLHENSGGILKQIVLFESGSH 184
+P + + +N ++ + G H
Sbjct: 211 IPCDFIRWMIDNFNV--SKVYEIDGGDH 236
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 30.5 bits (68), Expect = 0.42
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHENS--GGILKQIVLFESGSHND-TWKCSGYYHTISQFL 201
PT I D + ++ K NS K + + SH +L
Sbjct: 212 PTLIIGAEYDTIASVTLHSKPFYNSIPSPTDKAYLELDGASHFAPNITNKTIGMYSVAWL 271
Query: 202 -------AKANDFLPTPPSTSVASS 219
+ FL P T + S
Sbjct: 272 KRFVDEDTRYTQFLCPGPRTGLLSD 296
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 28.9 bits (65), Expect = 0.42
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 9 IFVKSLDGTKIHLYFIPQP-----DVKAKCE 34
I V+++DG+K +++ +
Sbjct: 10 IQVRTIDGSKTCTIEDVSRKATIEELRERVW 40
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 30.3 bits (69), Expect = 0.42
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 37 TLVYLHGNAGNIG----HRLHNVAGLHSMLKCNVLMVEYR 72
++YLHG +G HR V + + L+++YR
Sbjct: 82 AILYLHGGGYVMGSINTHR-SMVGEISRASQAAALLLDYR 120
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 30.3 bits (69), Expect = 0.42
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ R+ PT I G D + S +
Sbjct: 204 LARIERPTLVIAGAYDTVTAASHGELIAA 232
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 30.3 bits (69), Expect = 0.45
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 37 TLVYLHGNAGNIG----HRLHNVAGLHSMLKCNVLMVEYR 72
++Y HG G H L + ++YR
Sbjct: 82 HILYFHGGGYISGSPSTHL-VLTTQLAKQSSATLWSLDYR 120
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 30.0 bits (67), Expect = 0.46
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
++ D + P + EN ++ E G H
Sbjct: 198 KKIYVWTDQDEIFLPEFQLWQIENYKP--DKVYKVEGGDH 235
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 30.3 bits (67), Expect = 0.58
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 134 LSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHEN---SGGILKQIVLFESGSHNDTWKC 190
L W + PT ND VP + G +V +G+ +D
Sbjct: 319 LLEWAPQT---PTLLCGSSNDATVPLKNAQTAIASFQQRGSNQVALVDTGTGNASDN--- 372
Query: 191 SGYYHTISQ--FLAKANDFL 208
S + H +++ + D L
Sbjct: 373 SAFAHMLTKESCIVVVRDQL 392
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL
conjugation pathway, ATP-binding, ligase, nucleotide-
binding, polymorphism; 2.85A {Homo sapiens} SCOP:
k.45.1.1 PDB: 3dbr_I 3dbl_I
Length = 88
Score = 28.1 bits (63), Expect = 0.64
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
I VK+L G +I + P +K + E
Sbjct: 15 IKVKTLTGKEIEIDIEPTDKVERIKERVE 43
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural
protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Length = 88
Score = 28.1 bits (63), Expect = 0.71
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+F+K+L G + P ++KAK +
Sbjct: 12 LFIKTLTGKTFTVEMEPSDTIENLKAKIQ 40
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 29.6 bits (66), Expect = 0.73
Identities = 8/55 (14%), Positives = 14/55 (25%)
Query: 133 FLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSHNDT 187
R P F + G D + P + + + SH +
Sbjct: 155 GHDSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRRANVPVFWGERRYVSHFEP 209
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 29.9 bits (66), Expect = 0.75
Identities = 5/46 (10%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHEN---SGGILKQIVLFESGSHNDT 187
P + D VP + + + + + ++ H
Sbjct: 309 PLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKSVSDALDHVQA 354
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 29.5 bits (67), Expect = 0.82
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+R+ P I +D LVP + +LH
Sbjct: 196 ADRIRCPVQIICASDDLLVPTACSSELHA 224
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 29.5 bits (67), Expect = 0.84
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE---NSGGILKQIVLFESGSH 184
+ +V+ P+ + +D + P ++ +H+ S + E+ H
Sbjct: 206 LSKVTVPSLILQCADDIIAPATVGKYMHQHLPYS-----SLKQMEARGH 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.95
Identities = 45/249 (18%), Positives = 70/249 (28%), Gaps = 105/249 (42%)
Query: 20 HLYFIPQPDVKAKCETM--TL------------VYLHGNAGNIGHRLHNVA--------- 56
LY V + TL V+ G NI L N +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLL 232
Query: 57 ---------GL----HSMLKCNVLMV---EYRGY-----GKSQG--GAVAIDLLARPEYA 93
G+ H ++ +L E R Y G SQG AVAI A
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI---A----E 285
Query: 94 SKIWCLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLN 153
+ W +F A+ +L + +R + E N +
Sbjct: 286 TDSW-----ESFFVSVRKAITVLFFIGVR------------CY---EAYPNTS------- 318
Query: 154 DHLVPPSMMVKLHENSGGI----LKQIVLFESGSHNDTWKCSGYYH-TISQFLAKANDFL 208
+PPS++ EN+ G+ L S + ++ K N L
Sbjct: 319 ---LPPSILEDSLENNEGVPSPMLS---------------ISNLTQEQVQDYVNKTNSHL 360
Query: 209 PTPPSTSVA 217
P ++
Sbjct: 361 PAGKQVEIS 369
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis,
signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1
PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B
2nvu_I* 3dqv_A 1bt0_A
Length = 76
Score = 27.6 bits (62), Expect = 0.96
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
I VK+L G +I + P +K + E
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVE 31
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL,
ubiquitin family, structural genomics; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 87
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+FVK+ DG P +K + E
Sbjct: 10 VFVKNPDGGSYAYAINPNSFILGLKQQIE 38
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase,
deamidati bacterial effector, cell cycle-protein
binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Length = 88
Score = 27.7 bits (62), Expect = 1.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
I VK+L G +I + P +K + E
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVE 31
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 27.6 bits (62), Expect = 1.1
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCET 35
I +K+L + P +K K E
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEA 37
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 29.1 bits (65), Expect = 1.1
Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 11/148 (7%)
Query: 38 LVYLHGNAGNIGHRLHNVAGLHSMLKCNVLMVEYRGYGKSQGGAVAIDLLARPEYASKIW 97
V++ + H L ++ +M++ + + ++ P++ +
Sbjct: 107 AVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMILGPQFMALKM 166
Query: 98 CLIVENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSN-PTFFIVGLNDHL 156
L L K + R LF + ER + +I D
Sbjct: 167 FQNC-------SVEDLELAKM-LTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKS 218
Query: 157 VPPSMMVKLHENSGGILKQIVLFESGSH 184
P E+ G ++ + H
Sbjct: 219 FPVEFQKWFVESVGA--DKVKEIKEADH 244
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP:
d.15.1.1 PDB: 1yx6_B
Length = 98
Score = 27.8 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond,
metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B
2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A
2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A
1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Length = 76
Score = 27.3 bits (61), Expect = 1.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCETMTLVYLH 42
IFVK+L G I L P +VKAK + +
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 28.9 bits (65), Expect = 1.3
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 132 KFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGG-----ILKQIVLFESGSH 184
+ + W +V PT FIVG D + + N G +L+++V+ E +H
Sbjct: 250 ELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAH 307
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 27.4 bits (61), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 4 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 27.2 bits (61), Expect = 1.4
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 8 SIFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+ VK+LD Q + K
Sbjct: 7 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIA 36
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 29.1 bits (65), Expect = 1.4
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 132 KFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
K+ ++ P + D ++ P M + +
Sbjct: 474 KWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMED 509
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold,
GP78-binding, chaperone; 1.30A {Homo sapiens}
Length = 88
Score = 27.3 bits (61), Expect = 1.5
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+ VK+LD Q + K
Sbjct: 20 VLVKTLDSQTRTFIVGAQMNVKEFKEHIA 48
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 28.7 bits (64), Expect = 1.6
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHE 167
P F D+ VP +
Sbjct: 211 PVFIAHCNGDYDVPVEESEHIMN 233
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 28.8 bits (63), Expect = 1.7
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCET 35
I +K+L + P +K K E
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEA 39
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing,
protein binding; 2.60A {Homo sapiens}
Length = 111
Score = 27.5 bits (61), Expect = 1.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 38 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 66
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 28.7 bits (63), Expect = 1.8
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 74 YGKSQGGAVAIDLLARPEYASKIWCLIVENTFTSIPDMALILLKWNVLRKMPL-FCFKN- 131
G S G + L + I+ + + + A+++ K + + P ++
Sbjct: 230 SGFSLGTEPMMVLGVLDK---DIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHL 286
Query: 132 -----KFLSHWKIE--RVSNPTFFIVGLNDHLVPPS 160
++ + + P F G D
Sbjct: 287 IPGYWRYFNFPDVVASLAPRPIIFTEGGLDRDFRLV 322
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 27.3 bits (61), Expect = 1.8
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCET 35
+ +K+L + P+ +K K E+
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIES 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific
protease activity, hydrolase, ubiquitin B structural
genomics consortium, SGC; 2.70A {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 34
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 28.1 bits (63), Expect = 2.2
Identities = 4/50 (8%), Positives = 15/50 (30%), Gaps = 9/50 (18%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSM----MVKLHENSGGILKQIVLFESGSH 184
+ P ++G ++ + P + + + ++ H
Sbjct: 242 LRSARVPILLLLGEHEVIYDPHSALHRASSFVPDI-----EAEVIKNAGH 286
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon,
inhibitor, ubiqu acetylation, cytoplasm, isopeptide
bond, nucleus; 2.60A {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 2.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCETMTLVYLH 42
I VK+L G I L P +VKAK + +
Sbjct: 6 IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPD 42
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 28.2 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
PTF VG D ++ P +M L + G + ++ E+G H
Sbjct: 240 PTFMAVGAQDPVLGPEVMGMLRQAIRG-CPEPMIVEAGGH 278
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 28.1 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
I+ + N T I G D +VP S ++L E
Sbjct: 208 DIKTLPNETLIIHGREDQVVPLSSSLRLGE 237
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell
cycle, DNA damage, DNA repair, DNA-binding, ligase, Met
binding, nuclear protein; 2.00A {Homo sapiens} SCOP:
d.15.1.1
Length = 78
Score = 26.5 bits (59), Expect = 2.3
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 9 IFVKSLDGTKIHLYFIPQP-----DVKAK 32
I V+++DG + H +++ K
Sbjct: 5 IQVRTMDGRQTHTVDSLSRLTKVEELRRK 33
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 28.0 bits (62), Expect = 2.3
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 121 LRKMPLFCFKNKF----LSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQI 176
+R + L+ ++ LS + V FIV + + + + E + ++
Sbjct: 182 VRPLYLYLAEDISKEVVLSSKRYGSV--KRVFIVATENDALKKEFLKLMIEKNPP--DEV 237
Query: 177 VLFESGSH 184
E H
Sbjct: 238 KEIEGSDH 245
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 81
Score = 26.5 bits (59), Expect = 2.3
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+ VK+L G + L +K
Sbjct: 10 LTVKALQGRECSLQVPEDELVSTLKQLVS 38
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHEN-SGGILKQIVLFESGSH 184
+E +S P D L P + + EN L L ++ H
Sbjct: 214 LEDISTPALIFQSAKDSLASPEVGQYMAENIPNSQL---ELIQAEGH 257
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 28.0 bits (63), Expect = 2.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ R+ + G D +VP + L +
Sbjct: 221 LGRLPHDVLVFHGRQDRIVPLDTSLYLTK 249
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET:
MSE; 1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 27.7 bits (62), Expect = 2.8
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 17/79 (21%)
Query: 5 PYESIFVKSLDGTKIHLYFIPQPDVKAKCETMTLVYLHGNAGNIGHRLHNVA-----GLH 59
YE + S DG ++H ++ L G N ++A
Sbjct: 4 EYEDRYWTSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN-ARDFEDLATRLAGDWR 57
Query: 60 SMLKCNVLMVEYRGYGKSQ 78
VL E RG G S
Sbjct: 58 ------VLCPEMRGRGDSD 70
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 27.7 bits (62), Expect = 2.9
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 37 TLVYLHGNA----GNIGHRLHNVAGLHSMLKCNVLMVEYR 72
++Y+HG + H + + V++ Y
Sbjct: 98 KILYIHGGFNALQPSPFHW-RLLDKITLSTLYEVVLPIYP 136
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion
protein; ubiquitin interacting motif, UIM, protein
domain interface; NMR {Saccharomyces cerevisiae}
Length = 114
Score = 26.7 bits (59), Expect = 3.1
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 1 MHGLPYES---IFVKSLDGTKIHLYFIPQ---PDVKAKCETMTLVYLH 42
MH + IF K+L G I L +VK+K + +
Sbjct: 1 MHHHHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 26.6 bits (59), Expect = 3.3
Identities = 3/29 (10%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
+ ++ G + L +K +
Sbjct: 26 LRLRLSTGKDLKLVVRSTDTVFHMKRRLH 54
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 27.7 bits (62), Expect = 3.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ + T + G ND VP ++L
Sbjct: 225 LAEIKAQTLIVWGRNDRFVPMDAGLRLLS 253
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 27.3 bits (61), Expect = 3.6
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
++ + TF G +D VP +KL
Sbjct: 221 RLGEIKAKTFITWGRDDRFVPLDHGLKLLW 250
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_9
Length = 189
Score = 27.4 bits (60), Expect = 3.8
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAK 32
+ VK+L+G D+K++
Sbjct: 3 VQVKTLEGETKIYTLEQGTSVLDLKSQ 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase,
DE-isgylase, hydrolase-protein complex; 1.60A {Homo
sapiens}
Length = 79
Score = 25.8 bits (57), Expect = 4.3
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 8 SIFVKSLDGTKIHLYFIPQ---PDVKAKCETMTLVYLH 42
SI V++ G +K + + V
Sbjct: 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 27.1 bits (60), Expect = 4.8
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 37 TLVYLHGNAGNIGHRLHNVAG-LHSMLKCNVLMVEYRGYGKS 77
L+ LHG + + S ++C ++ ++ R +G++
Sbjct: 40 VLLLLHGGGHS-ALSWAVFTAAIISRVQCRIVALDLRSHGET 80
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 26.9 bits (60), Expect = 5.0
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 141 RVSNPTFFIVGLNDHLVPPSMMVKLHE 167
++ P I +D + PP + ++ +
Sbjct: 229 NIAAPVLVIGFADDVVTPPYLGREVAD 255
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 27.0 bits (60), Expect = 5.1
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 116 LKWNVLRKMPLFCFKNKFLSHWK-IERVSNPTFFIVGLNDHLVPPSMM 162
+++ +R F W ++ +S P + G + V
Sbjct: 247 WRYDAIRTFG------DFAGLWDDVDALSAPITLVRGGSSGFVTDQDT 288
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.1 bits (60), Expect = 5.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 141 RVSNPTFFIVGLNDHLVPPSMMVKLHE 167
V+ PT I +D + P L
Sbjct: 235 EVTVPTLVIQAEHDPIAPAPHGKHLAG 261
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.0 bits (60), Expect = 5.3
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
+ PT + G D+++P + + V E H
Sbjct: 214 AVRAAGKPTLILHGTKDNILPIDATARRFHQAVPEA-----DYVEVEGAPH 259
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A
{Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A
2zvo_A 2y5b_B
Length = 152
Score = 26.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
V++L+G+ L + VK K E
Sbjct: 13 FLVENLNGSSFELEVDYRDTLLVVKQKIE 41
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 26.5 bits (59), Expect = 6.4
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 141 RVSNPTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
++ PT + G D +VP L + S + ++ H
Sbjct: 211 KIDVPTLVVHGDADQVVPIEASGIASAALVKGS-----TLKIYSGAPH 253
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 138 KIERVSNPTFFIVGLNDHLVPPSM--MVKLHENSGGILKQIVLFESGSHN 185
+++ + PT + G D M L NS + L + H
Sbjct: 202 RLKEIKVPTLILAGEYDEKFVQIAKKMANLIPNS-----KCKLISATGHT 246
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 26.6 bits (59), Expect = 6.7
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 132 KFLSHWKIERVSNPTFFIVGLNDHLVPPSMMVKLHENSGGILKQIVLFESGSH 184
+ + W TF +G+ D L+ P +M + G + + H
Sbjct: 243 FWQNDWNG-----QTFMAIGMKDKLLGPDVMYPMKALING-CPEPLEIADAGH 289
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo
sapiens}
Length = 172
Score = 26.2 bits (57), Expect = 7.6
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCE 34
IFVK+L G I L P +VKAK +
Sbjct: 23 IFVKTLTGKTITLEVEPSDTIENVKAKIQ 51
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 26.5 bits (59), Expect = 7.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSMMVKLHE 167
+ R+ P I G D + P + +
Sbjct: 226 VYRLRQPVLLIWGREDRVNPLDGALVALK 254
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 26.4 bits (57), Expect = 7.8
Identities = 9/59 (15%), Positives = 16/59 (27%)
Query: 101 VENTFTSIPDMALILLKWNVLRKMPLFCFKNKFLSHWKIERVSNPTFFIVGLNDHLVPP 159
F +L N ++ LF L E + P + N+ +
Sbjct: 96 CSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFPNELRCNNVQIKD 154
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 26.5 bits (59), Expect = 8.0
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 134 LSHWKIERVSNPTFFIV---------GLNDHLV--PPSMMVKLHENSGGILKQIVLFE 180
+SH ER P F + D+LV + ++ S + + F
Sbjct: 303 ISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFL 360
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 26.2 bits (58), Expect = 8.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 139 IERVSNPTFFIVGLNDHLVPPSM----MVKLHENSGGILKQIVLFESGSH 184
+E+ + PT I G +D VP + NS ++ L + G H
Sbjct: 217 LEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNS-----KVALIKGGPH 261
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 26.5 bits (58), Expect = 8.2
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 132 KFLSHWKIERVSNPTFFIVGLNDHLVPPSM-----MVKLHENSGGILKQIVLFESGSH 184
L+ + + ++ P FI G D ++ N + + H
Sbjct: 280 HDLADQQGKPLTPPALFIGGQYDVGTIWGAQAIERAHEVMPN----YRGTHMIADVGH 333
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15,
structure, northeast structural genomics consortium,
protein structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 25.0 bits (55), Expect = 8.2
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 9 IFVKSLDGTKIHLYFIPQ---PDVKAKCETMTLVYLH 42
I V++ G +K + + V
Sbjct: 7 ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 26.5 bits (59), Expect = 8.3
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 145 PTFFIVGLNDHLVPPSMMVKLHEN--SGGILKQIVLFESGSH 184
P + G +D +VP L G L ++ H
Sbjct: 218 PVLVMHGDDDQIVPYENSGVLSAKLLPNGAL---KTYKGYPH 256
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 26.2 bits (58), Expect = 8.9
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 134 LSHW-KIERVSNPTFFIVGLNDHLVPPS 160
+ W KI +P FI G N V
Sbjct: 185 IVGWEKIPAWDHPALFIPGGNSPYVSEQ 212
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 26.1 bits (58), Expect = 9.3
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 145 PTFFIVGLNDHLVPPS----MMVKLHENSGGILKQIVLFESGSH 184
PT I G D +VP + +L + + ++ +++ H
Sbjct: 213 PTLVIHGDGDQIVPFETTGKVAAELIKGA-----ELKVYKDAPH 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,504,992
Number of extensions: 198963
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 139
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)