Query psy18023
Match_columns 151
No_of_seqs 6 out of 8
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 20:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.0 0.038 1.3E-06 37.9 13.4 36 64-99 2-37 (284)
2 2ch7_A Methyl-accepting chemot 96.5 0.095 3.3E-06 39.1 12.6 34 69-102 220-253 (309)
3 3zbh_A ESXA; unknown function, 96.2 0.098 3.3E-06 33.1 10.0 85 52-142 3-90 (99)
4 3g67_A Methyl-accepting chemot 96.2 0.21 7.3E-06 38.8 13.7 78 71-148 126-205 (213)
5 3zx6_A HAMP, methyl-accepting 96.0 0.27 9.1E-06 39.0 13.8 76 74-149 219-299 (341)
6 3zx6_A HAMP, methyl-accepting 95.9 0.3 1E-05 38.7 13.5 7 19-25 15-21 (341)
7 3gwk_C SAG1039, putative uncha 95.8 0.2 6.7E-06 32.2 10.2 86 52-143 2-90 (98)
8 3g67_A Methyl-accepting chemot 95.6 0.54 1.8E-05 36.5 13.7 72 63-134 2-79 (213)
9 4ioe_A Secreted protein ESXB; 95.3 0.075 2.6E-06 33.6 6.8 80 54-139 5-87 (93)
10 2vs0_A Virulence factor ESXA; 95.2 0.19 6.4E-06 31.6 8.3 78 56-139 4-84 (97)
11 1c1g_A Tropomyosin; contractIl 95.0 0.52 1.8E-05 32.2 11.9 30 112-141 73-102 (284)
12 1qu7_A Methyl-accepting chemot 94.3 0.77 2.6E-05 35.1 11.3 18 123-140 200-217 (227)
13 3c98_B Syntaxin-1A; protein co 93.9 0.67 2.3E-05 33.2 9.6 26 71-96 43-68 (279)
14 3zrx_A AF1503 protein, osmolar 91.9 1.2 4.2E-05 26.5 9.1 42 64-105 40-85 (115)
15 3zbh_A ESXA; unknown function, 91.8 1.5 5.2E-05 27.4 11.6 69 77-145 14-86 (99)
16 1qu7_A Methyl-accepting chemot 91.5 3.7 0.00013 31.3 12.6 22 128-149 198-219 (227)
17 4ioe_A Secreted protein ESXB; 91.3 1.7 6E-05 27.2 11.7 72 76-147 13-88 (93)
18 3zrx_A AF1503 protein, osmolar 90.7 1.7 5.7E-05 25.9 8.0 13 72-84 41-53 (115)
19 3oja_B Anopheles plasmodium-re 90.7 5.8 0.0002 32.1 14.5 43 108-150 537-579 (597)
20 1l8d_A DNA double-strand break 90.6 2.7 9.3E-05 28.1 12.5 85 62-146 4-102 (112)
21 2efk_A CDC42-interacting prote 90.3 4.3 0.00015 30.1 12.8 44 62-105 70-114 (301)
22 3gwk_C SAG1039, putative uncha 90.3 2.4 8E-05 27.0 11.5 38 108-145 48-85 (98)
23 3c98_B Syntaxin-1A; protein co 90.0 2.3 8E-05 30.4 8.5 32 62-93 41-72 (279)
24 2efl_A Formin-binding protein 89.8 4.7 0.00016 29.7 13.4 78 62-140 77-155 (305)
25 1s94_A S-syntaxin; three helix 89.5 4.4 0.00015 29.2 9.7 25 70-94 38-62 (180)
26 2ieq_A S glycoprotein, spike g 88.8 5.9 0.0002 29.5 10.4 81 66-147 13-104 (109)
27 4abx_A DNA repair protein RECN 88.8 4.8 0.00016 29.3 9.5 42 106-147 120-161 (175)
28 1ez3_A Syntaxin-1A; three heli 88.5 4.1 0.00014 27.3 10.7 25 70-94 7-31 (127)
29 2vs0_A Virulence factor ESXA; 88.3 3.2 0.00011 25.8 11.1 70 77-146 11-84 (97)
30 3fav_B ESAT-6, 6 kDa early sec 87.8 3.6 0.00012 25.9 8.1 33 56-88 3-35 (94)
31 3fav_A ESAT-6-like protein ESX 87.6 4.1 0.00014 26.3 7.9 36 55-90 4-39 (101)
32 1fio_A SSO1 protein; four heli 86.7 6.9 0.00023 27.9 10.3 16 65-80 13-28 (196)
33 1s94_A S-syntaxin; three helix 86.5 4.2 0.00014 29.3 8.0 28 63-90 38-65 (180)
34 1ez3_A Syntaxin-1A; three heli 86.1 5.1 0.00017 26.8 7.8 21 61-81 12-32 (127)
35 1i84_S Smooth muscle myosin he 85.8 9 0.00031 35.3 11.5 9 21-29 841-849 (1184)
36 2v0o_A FCHO2, FCH domain only 85.7 8.6 0.00029 28.1 13.2 44 62-105 74-117 (276)
37 3na7_A HP0958; flagellar bioge 83.5 13 0.00045 28.4 13.7 17 108-124 90-106 (256)
38 4h8s_A DCC-interacting protein 82.5 16 0.00056 28.8 10.5 53 54-106 33-89 (407)
39 2v71_A Nuclear distribution pr 81.5 17 0.0006 28.4 14.8 26 125-150 119-144 (189)
40 3s84_A Apolipoprotein A-IV; fo 81.2 19 0.00064 28.6 11.9 54 65-118 41-98 (273)
41 3s84_A Apolipoprotein A-IV; fo 80.7 20 0.00067 28.5 12.1 13 133-145 129-141 (273)
42 3i2w_A Syndapin, LD46328P; EFC 80.7 15 0.00053 27.3 10.4 40 66-105 65-105 (290)
43 1i6z_A BAG-family molecular ch 79.9 8.1 0.00028 29.4 7.5 30 62-91 22-51 (135)
44 2efl_A Formin-binding protein 79.5 16 0.00055 26.8 12.4 42 63-104 16-57 (305)
45 1hx1_B BAG-1, BAG-family molec 79.4 10 0.00034 28.3 7.7 35 74-108 10-44 (114)
46 3oja_B Anopheles plasmodium-re 78.3 25 0.00086 28.4 12.3 31 69-99 457-487 (597)
47 2xhe_B Syntaxin1; exocytosis, 78.0 14 0.00047 28.4 8.4 10 70-79 50-59 (279)
48 3u8p_A Cytochrome B562 integra 76.9 8.5 0.00029 33.3 7.6 40 81-120 98-137 (347)
49 4i0x_B ESAT-6-like protein MAB 75.9 14 0.00048 24.2 8.2 35 52-86 5-39 (103)
50 3nvo_A Zinc transport protein 75.3 22 0.00074 26.1 10.3 31 116-146 228-258 (264)
51 3zcc_A HAMP, osmolarity sensor 75.2 11 0.00036 22.5 8.2 16 65-80 41-56 (114)
52 1nfn_A Apolipoprotein E3; lipi 74.9 22 0.00076 26.7 8.7 39 60-98 34-75 (191)
53 1gs9_A Apolipoprotein E, APOE4 74.8 17 0.00056 27.1 7.9 19 132-150 146-164 (165)
54 2d4x_A Flagellar HOOK-associat 74.0 21 0.00071 26.6 8.3 67 60-126 18-85 (248)
55 1gl2_D Syntaxin 8, vesicle tra 73.7 14 0.00047 23.1 6.6 13 117-129 39-51 (65)
56 2x3v_A Syndapin I, protein kin 73.1 29 0.00098 26.5 12.2 32 109-140 80-112 (337)
57 1dn1_B Syntaxin 1A, syntaxin b 72.3 29 0.00098 26.9 8.9 25 63-87 30-54 (267)
58 1wyy_A E2 glycoprotein; membra 72.0 33 0.0011 26.7 12.3 61 66-127 27-87 (149)
59 3t98_A Nuclear pore complex pr 70.5 8.4 0.00029 25.0 4.7 32 53-84 10-41 (51)
60 2v0o_A FCHO2, FCH domain only 69.5 30 0.001 25.2 13.8 18 63-80 20-37 (276)
61 1io1_A Phase 1 flagellin; beta 68.9 40 0.0014 27.8 9.6 70 59-128 4-74 (398)
62 3pwx_A Putative flagellar HOOK 68.8 36 0.0012 26.0 8.7 69 59-127 19-88 (239)
63 1hx1_B BAG-1, BAG-family molec 68.5 7.8 0.00027 28.9 4.8 28 63-90 13-40 (114)
64 1i6z_A BAG-family molecular ch 67.3 38 0.0013 25.6 10.5 27 69-95 22-48 (135)
65 2bez_C E2 glycoprotein; coiled 66.3 31 0.0011 24.3 10.1 62 79-141 13-74 (77)
66 3r4h_A Coiled coil helix CC-TE 66.3 13 0.00045 22.9 4.7 22 119-140 6-27 (34)
67 3v47_C Flagellin; innate immun 66.0 37 0.0013 29.3 9.1 71 58-128 15-86 (425)
68 1gs9_A Apolipoprotein E, APOE4 65.5 39 0.0013 25.1 10.8 27 81-107 57-84 (165)
69 3r4h_A Coiled coil helix CC-TE 64.4 12 0.00042 23.0 4.3 25 110-134 4-28 (34)
70 2yfa_A MCPS, methyl-accepting 64.4 36 0.0012 24.2 9.6 16 64-79 174-189 (258)
71 3g9g_A Suppressor of yeast pro 64.3 16 0.00053 29.6 6.2 46 57-102 111-157 (287)
72 2xhe_B Syntaxin1; exocytosis, 64.1 46 0.0016 25.4 9.3 25 70-94 43-67 (279)
73 3k8w_A Flagellin homolog; flag 63.7 44 0.0015 28.0 8.9 70 58-127 36-106 (326)
74 3haj_A Human pacsin2 F-BAR; pa 63.3 62 0.0021 26.6 11.8 33 108-140 81-114 (486)
75 3ghg_A Fibrinogen alpha chain; 62.3 63 0.0022 29.5 10.2 31 44-74 46-77 (562)
76 1deq_A Fibrinogen (alpha chain 61.2 84 0.0029 27.4 12.3 17 36-52 41-57 (390)
77 3r2p_A Apolipoprotein A-I; amp 60.7 46 0.0016 24.3 10.4 14 138-151 168-181 (185)
78 1wyy_A E2 glycoprotein; membra 60.0 59 0.002 25.3 10.1 63 79-142 26-88 (149)
79 3rrk_A V-type ATPase 116 kDa s 58.6 61 0.0021 25.0 9.0 39 110-148 94-135 (357)
80 3haj_A Human pacsin2 F-BAR; pa 58.6 76 0.0026 26.1 12.6 38 67-104 80-118 (486)
81 3i2w_A Syndapin, LD46328P; EFC 58.5 54 0.0018 24.4 12.1 22 110-131 69-90 (290)
82 1sfc_D Protein (SNAP-25B), pro 57.7 39 0.0013 22.5 7.7 8 68-75 29-36 (87)
83 1fio_A SSO1 protein; four heli 57.6 47 0.0016 23.5 10.0 27 70-96 4-30 (196)
84 3abh_A Pacsin2, protein kinase 57.6 58 0.002 24.5 12.7 23 62-84 30-52 (312)
85 2yfa_A MCPS, methyl-accepting 57.5 48 0.0016 23.5 10.7 48 82-129 48-100 (258)
86 3gn4_A Myosin-VI; unconvention 57.1 19 0.00063 27.5 5.1 69 63-131 74-144 (148)
87 1txp_A HnRNP C, heterogeneous 57.0 12 0.00041 22.3 3.2 23 112-134 3-25 (28)
88 2a01_A Apolipoprotein A-I; fou 56.3 62 0.0021 24.7 8.0 16 134-149 108-123 (243)
89 2efk_A CDC42-interacting prote 56.0 57 0.002 23.9 12.6 67 61-127 76-149 (301)
90 4akv_A Sorting nexin-33; trans 54.1 87 0.003 25.4 11.0 45 86-130 221-268 (386)
91 3m3w_A Pacsin3, protein kinase 53.8 75 0.0026 24.6 10.4 37 68-104 79-116 (320)
92 2xz3_A Maltose ABC transporter 53.4 62 0.0021 25.6 7.8 58 91-148 362-419 (463)
93 2l7b_A Apolipoprotein E, APO-E 53.3 89 0.0031 25.3 9.3 38 87-124 112-152 (307)
94 2ke4_A CDC42-interacting prote 53.0 56 0.0019 22.9 9.2 80 56-142 4-89 (98)
95 2ieq_A S glycoprotein, spike g 52.5 44 0.0015 24.8 6.3 37 71-107 4-40 (109)
96 4dyl_A Tyrosine-protein kinase 51.9 93 0.0032 25.1 11.3 81 61-142 72-154 (406)
97 2iub_A CORA, divalent cation t 51.4 87 0.003 24.6 11.7 19 109-127 262-280 (363)
98 1l4a_D S-SNAP25 fusion protein 51.2 43 0.0015 22.5 5.7 8 68-75 30-37 (87)
99 1ucu_A Phase 1 flagellin; flag 51.1 92 0.0031 26.4 8.9 72 57-128 54-126 (494)
100 2zdi_C Prefoldin subunit alpha 50.3 64 0.0022 22.7 7.2 39 63-101 11-52 (151)
101 2x3v_A Syndapin I, protein kin 50.0 82 0.0028 23.9 12.4 39 67-105 78-117 (337)
102 1ic2_A Tropomyosin alpha chain 49.3 53 0.0018 21.5 8.6 29 112-140 45-73 (81)
103 3aco_A Pacsin2, protein kinase 49.2 89 0.003 24.1 13.1 43 62-104 30-72 (350)
104 1txp_A HnRNP C, heterogeneous 49.1 8.5 0.00029 22.9 1.7 22 65-86 3-24 (28)
105 1l8d_A DNA double-strand break 48.7 55 0.0019 21.6 12.4 31 68-98 3-33 (112)
106 2f95_B Sensory rhodopsin II tr 47.8 3.9 0.00013 26.6 0.0 25 109-133 113-137 (163)
107 2e7s_A RAB guanine nucleotide 47.8 48 0.0016 25.0 6.0 55 77-131 27-83 (135)
108 4ev6_A Magnesium transport pro 47.3 98 0.0033 24.0 11.2 20 110-129 239-258 (339)
109 3plt_A Sphingolipid long chain 46.9 1.1E+02 0.0039 24.7 12.9 55 65-120 20-74 (234)
110 1ux5_A BNI1 protein; structura 45.0 1.2E+02 0.0041 24.4 9.9 40 60-99 272-315 (411)
111 2j69_A Bacterial dynamin-like 44.7 1.5E+02 0.0053 25.6 13.3 38 113-150 452-490 (695)
112 2q13_A DCC-interacting protein 44.6 1.1E+02 0.0038 23.9 13.2 36 65-100 32-67 (385)
113 1m1j_B Fibrinogen beta chain; 44.2 1.6E+02 0.0055 25.6 13.7 13 75-87 100-112 (464)
114 4ev6_A Magnesium transport pro 42.9 1.2E+02 0.004 23.6 12.8 15 117-131 239-253 (339)
115 1zww_A SH3-containing GRB2-lik 42.8 1.1E+02 0.0036 23.1 9.5 35 65-99 92-129 (256)
116 2asw_A Hypothetical protein AF 42.6 30 0.001 17.9 3.2 11 92-102 10-20 (56)
117 3q0x_A Centriole protein; cent 42.5 1.1E+02 0.0039 24.3 7.8 12 53-64 94-105 (228)
118 2nrj_A HBL B protein; enteroto 41.8 1.3E+02 0.0043 24.4 8.1 16 131-146 313-328 (346)
119 2nps_D Syntaxin-6; vesicle fus 41.4 72 0.0025 20.8 6.9 26 116-141 48-73 (82)
120 3b5n_D Protein transport prote 41.1 70 0.0024 20.6 7.7 9 67-75 9-17 (64)
121 4b9q_A Chaperone protein DNAK; 41.0 1.4E+02 0.0047 25.3 8.4 20 36-55 496-515 (605)
122 3h6p_C ESAT-6-like protein ESX 40.6 34 0.0012 21.7 3.7 25 56-80 4-28 (96)
123 1ic2_A Tropomyosin alpha chain 40.4 75 0.0026 20.7 10.1 32 114-145 40-71 (81)
124 3dyt_A Sorting nexin-9; 3-heli 40.2 1.4E+02 0.0048 23.8 11.0 46 87-132 202-250 (366)
125 3v47_C Flagellin; innate immun 39.6 1.1E+02 0.0037 26.4 7.7 20 130-149 67-86 (425)
126 1ucu_A Phase 1 flagellin; flag 39.4 1.7E+02 0.006 24.7 12.6 89 62-150 13-127 (494)
127 3swh_A MUNC13-1, protein UNC-1 39.3 1.6E+02 0.0054 24.1 9.7 65 58-122 120-187 (341)
128 3abh_A Pacsin2, protein kinase 38.7 1.2E+02 0.0042 22.7 12.3 36 69-104 89-125 (312)
129 2d4y_A HAP1, flagellar HOOK-as 38.6 1.6E+02 0.0055 24.0 11.7 18 89-106 78-95 (463)
130 4abx_A DNA repair protein RECN 38.4 66 0.0023 23.1 5.4 36 51-87 78-113 (175)
131 2dq0_A Seryl-tRNA synthetase; 38.4 1.7E+02 0.0058 24.6 8.6 57 82-140 45-101 (455)
132 3l39_A Putative PHOU-like phos 38.3 84 0.0029 23.4 6.1 18 87-104 99-116 (227)
133 2iub_A CORA, divalent cation t 38.2 1.4E+02 0.0049 23.4 11.5 6 119-124 265-270 (363)
134 2bez_C E2 glycoprotein; coiled 38.0 1E+02 0.0035 21.6 10.0 62 65-127 13-74 (77)
135 3obv_E Protein diaphanous homo 37.7 1.5E+02 0.0052 24.8 8.2 23 77-99 283-305 (457)
136 4gfq_A Ribosome-recycling fact 37.1 1.5E+02 0.0052 23.3 8.1 17 18-34 105-121 (209)
137 4h8s_A DCC-interacting protein 36.9 1.5E+02 0.0052 23.3 13.2 34 65-98 55-88 (407)
138 3l39_A Putative PHOU-like phos 36.6 19 0.00064 27.0 2.2 24 76-99 95-118 (227)
139 1ux5_A BNI1 protein; structura 36.2 1.1E+02 0.0039 24.5 7.0 23 63-85 293-315 (411)
140 4h63_H Mediator of RNA polymer 35.9 1.2E+02 0.0041 23.4 6.8 15 77-91 13-27 (200)
141 3fav_A ESAT-6-like protein ESX 35.9 83 0.0028 19.9 9.9 21 82-102 17-37 (101)
142 3f6n_A Virion-associated prote 35.8 92 0.0031 23.7 5.9 30 62-91 3-32 (129)
143 3fx7_A Putative uncharacterize 35.7 1.2E+02 0.004 21.6 9.9 72 70-145 11-82 (94)
144 1m1j_C Fibrinogen gamma chain; 34.2 2.2E+02 0.0074 24.2 13.1 39 63-101 29-67 (409)
145 2z0v_A SH3-containing GRB2-lik 33.9 1.5E+02 0.005 22.1 9.9 67 66-132 77-146 (240)
146 2d4y_A HAP1, flagellar HOOK-as 33.3 2E+02 0.0067 23.5 11.8 12 129-140 103-114 (463)
147 3tl4_X Glutaminyl-tRNA synthet 33.1 54 0.0018 25.2 4.4 32 44-75 99-131 (187)
148 3ci9_A Heat shock factor-bindi 32.5 49 0.0017 21.0 3.4 9 117-125 33-41 (48)
149 3qne_A Seryl-tRNA synthetase, 32.4 2.4E+02 0.0081 24.5 8.7 59 80-140 45-103 (485)
150 1t7s_A BAG-1 cochaperone; stru 31.7 1.7E+02 0.0058 22.2 8.2 11 71-81 29-39 (137)
151 2ba2_A D12_ORF131, hypothetica 31.7 1.4E+02 0.0048 21.3 7.3 18 123-140 65-82 (85)
152 2ovc_A Potassium voltage-gated 31.3 51 0.0017 19.8 3.1 21 130-150 11-31 (33)
153 3aco_A Pacsin2, protein kinase 30.2 1.9E+02 0.0064 22.2 8.9 36 69-104 89-125 (350)
154 1ses_A Seryl-tRNA synthetase; 30.0 2.3E+02 0.008 23.3 10.3 22 126-147 75-96 (421)
155 4fla_A Regulation of nuclear P 30.0 1.7E+02 0.0057 21.7 11.9 18 132-149 127-144 (152)
156 2eqb_B RAB guanine nucleotide 29.9 1.5E+02 0.0052 21.2 8.6 27 69-95 6-32 (97)
157 3pev_B Nucleoporin GLE1; RECA, 29.8 1.8E+02 0.006 23.5 7.1 26 64-89 6-31 (297)
158 2olt_A Hypothetical protein; s 29.8 1.6E+02 0.0053 21.2 10.3 23 111-133 116-138 (227)
159 2dnx_A Syntaxin-12; snare, HAB 29.8 1.4E+02 0.0049 20.8 11.9 86 58-143 10-119 (130)
160 3fav_B ESAT-6, 6 kDa early sec 29.7 1E+02 0.0035 19.0 10.3 17 116-132 60-76 (94)
161 3nvo_A Zinc transport protein 29.6 1.5E+02 0.0052 21.5 6.2 26 110-135 229-254 (264)
162 3ck6_A Putative membrane trans 29.5 1.6E+02 0.0055 21.3 9.1 28 108-135 210-237 (252)
163 1v9d_A Diaphanous protein homo 29.3 1.8E+02 0.0062 22.8 7.0 29 53-84 205-233 (340)
164 2d4x_A Flagellar HOOK-associat 28.9 1.7E+02 0.006 21.5 8.9 18 131-148 69-86 (248)
165 2j1d_G DAAM1, disheveled-assoc 28.8 2.5E+02 0.0087 23.3 10.2 25 77-101 294-318 (483)
166 2lem_A Apolipoprotein A-I; lip 28.5 22 0.00076 26.7 1.5 6 90-95 110-115 (216)
167 1kmi_Z CHEZ, chemotaxis protei 28.3 2E+02 0.0069 22.1 9.8 19 131-149 149-167 (214)
168 1y66_A Engrailed homeodomain; 28.3 1.3E+02 0.0044 19.8 5.9 48 91-138 1-48 (52)
169 2j69_A Bacterial dynamin-like 28.0 2.9E+02 0.01 23.8 10.4 15 134-148 674-688 (695)
170 3k8w_A Flagellin homolog; flag 27.8 2.7E+02 0.0091 23.3 10.7 20 130-149 88-107 (326)
171 2ykt_A Brain-specific angiogen 27.6 2.2E+02 0.0076 22.3 10.3 43 64-106 73-120 (253)
172 2y7c_A Type-1 restriction enzy 27.6 1.7E+02 0.0059 21.9 6.3 35 112-146 380-414 (464)
173 2dq3_A Seryl-tRNA synthetase; 27.0 2.7E+02 0.0091 23.0 8.3 29 112-140 72-100 (425)
174 4ad8_A DNA repair protein RECN 26.2 2.6E+02 0.009 22.7 11.1 27 65-91 190-216 (517)
175 3htk_C E3 SUMO-protein ligase 26.1 2.4E+02 0.0081 23.1 7.3 9 95-103 42-50 (267)
176 2y7c_A Type-1 restriction enzy 25.6 2E+02 0.0068 21.6 6.3 35 112-146 167-201 (464)
177 4akg_A Glutathione S-transfera 25.6 3.6E+02 0.012 28.0 9.8 23 128-150 362-384 (2695)
178 3twe_A Alpha4H; unknown functi 25.5 1.1E+02 0.0037 17.9 3.7 22 125-146 4-25 (27)
179 3pev_B Nucleoporin GLE1; RECA, 24.7 2E+02 0.0068 23.3 6.5 11 109-119 61-71 (297)
180 3r84_A Mediator of RNA polymer 24.3 1.8E+02 0.0063 20.2 10.3 63 76-139 9-71 (86)
181 2lw1_A ABC transporter ATP-bin 23.8 1.6E+02 0.0054 19.3 6.3 20 108-127 56-75 (89)
182 1ax8_A Obesity protein, leptin 23.5 2.4E+02 0.0083 21.4 6.4 36 61-96 52-92 (146)
183 2bbh_A Divalent cation transpo 23.4 2.2E+02 0.0074 20.7 7.1 74 77-150 181-266 (269)
184 1m1j_A Fibrinogen alpha subuni 23.4 4.1E+02 0.014 23.9 11.9 37 38-74 41-78 (491)
185 1v9d_A Diaphanous protein homo 23.2 2E+02 0.0068 22.6 6.1 22 77-98 212-233 (340)
186 2hn1_A CORA, magnesium and cob 23.2 2.2E+02 0.0076 20.8 7.8 28 108-135 212-239 (266)
187 3obv_E Protein diaphanous homo 23.2 1.9E+02 0.0066 24.2 6.4 18 85-102 284-301 (457)
188 3vem_A Helicase protein MOM1; 23.1 2.3E+02 0.0079 21.0 6.2 16 114-129 67-82 (115)
189 2nox_A Tryptophan 2,3-dioxygen 22.9 1.7E+02 0.0059 23.6 5.8 41 92-132 62-102 (281)
190 2ba2_A D12_ORF131, hypothetica 22.4 2.1E+02 0.0073 20.3 9.2 9 79-87 44-52 (85)
191 2dq0_A Seryl-tRNA synthetase; 22.1 3.5E+02 0.012 22.7 10.9 61 87-149 43-103 (455)
192 3vkg_A Dynein heavy chain, cyt 22.0 7.5E+02 0.026 26.5 13.5 102 50-151 1937-2057(3245)
193 3g9g_A Suppressor of yeast pro 21.6 3.2E+02 0.011 21.9 10.3 33 113-145 120-153 (287)
194 2inr_A DNA topoisomerase 4 sub 21.2 4.3E+02 0.015 23.3 9.7 45 105-149 451-495 (514)
195 3qne_A Seryl-tRNA synthetase, 21.2 4E+02 0.014 23.0 11.3 61 86-148 44-104 (485)
196 2eqb_B RAB guanine nucleotide 20.6 2.4E+02 0.0081 20.1 11.8 25 64-88 8-32 (97)
197 4egw_A Magnesium transport pro 20.3 2.7E+02 0.0093 20.7 12.3 22 81-102 203-224 (280)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.03 E-value=0.038 Score=37.90 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 64 DQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~ 99 (151)
|.|+|.|..+-..++.+...++.+...+...-..+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333333
No 2
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=96.46 E-value=0.095 Score=39.08 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESNQVIKELNLII 102 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~QiSk~L~qIS 102 (151)
.++++...+.++...+.+|...++++....++|+
T Consensus 220 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 253 (309)
T 2ch7_A 220 KLNSIVGAVERINEMLQNIAAAIEEQTAAVDEIT 253 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 3
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=96.23 E-value=0.098 Score=33.08 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=49.8
Q ss_pred HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHH
Q psy18023 52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTI 128 (151)
Q Consensus 52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~is 128 (151)
|-..-+||+..|.+..+.+.+.+..+.++...|..-...|.. .|.-...+ ....+....+.++...|+.|+
T Consensus 3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~------~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 76 (99)
T 3zbh_A 3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG------IWEGASSEAFIQQYQELRPSFEKMAVLLNEVG 76 (99)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999998888888888877777766655532 23222111 344455555666666666666
Q ss_pred HHHHHHHHHHHHHH
Q psy18023 129 KELNQIIKELNQII 142 (151)
Q Consensus 129 K~L~qIsk~l~qI~ 142 (151)
..|.++.....+.-
T Consensus 77 ~~L~~~a~~~~~~d 90 (99)
T 3zbh_A 77 QQLHNSATILEDTD 90 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655554443
No 4
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=96.20 E-value=0.21 Score=38.79 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023 71 DQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148 (151)
Q Consensus 71 dQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~ 148 (151)
++..+...+|..-+..+.....+..+.+......... +.+..+...+..+++.+..+...+.+++..+.++....+++
T Consensus 126 ~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~s~~i~~i 205 (213)
T 3g67_A 126 NETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSA 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333332 33344444444444444444444444444444444444333
No 5
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.27 Score=38.96 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q psy18023 74 IKELDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIK---ELNQIIKELNQIIKELNQI 148 (151)
Q Consensus 74 SK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK---~L~qIsk~l~qI~K~l~q~ 148 (151)
.+.+++....+.+|...+.+++..+.+|+....+ ....+|...+.+|+....++.. ++...+..|.+....|.+.
T Consensus 219 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~ 298 (341)
T 3zx6_A 219 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEA 298 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444443333 3334444444444333333332 2233333444444444443
Q ss_pred h
Q psy18023 149 V 149 (151)
Q Consensus 149 ~ 149 (151)
|
T Consensus 299 v 299 (341)
T 3zx6_A 299 V 299 (341)
T ss_dssp T
T ss_pred H
Confidence 3
No 6
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.3 Score=38.66 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=3.1
Q ss_pred HHHHhcC
Q psy18023 19 LFRMFDG 25 (151)
Q Consensus 19 ~~~~~~~ 25 (151)
+.++-.|
T Consensus 15 ~~~ia~G 21 (341)
T 3zx6_A 15 VDKIAEG 21 (341)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 3444444
No 7
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=95.79 E-value=0.2 Score=32.20 Aligned_cols=86 Identities=7% Similarity=0.074 Sum_probs=51.5
Q ss_pred HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHH
Q psy18023 52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTI 128 (151)
Q Consensus 52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~is 128 (151)
|-..-+|++..|.+..+.+.+-+..+.++...|..-...|. ..|.-...+ ....+....+.++...|+.|+
T Consensus 2 MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~------~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~ 75 (98)
T 3gwk_C 2 AMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID------ENWDGSTFDSFEAQFNELSPKITEFAQLLEDIN 75 (98)
T ss_dssp HHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457899999988888888888777777666665554443 133322222 344455555555555666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy18023 129 KELNQIIKELNQIIK 143 (151)
Q Consensus 129 K~L~qIsk~l~qI~K 143 (151)
+.|.++.....+.-.
T Consensus 76 ~~L~~~a~~~~~~D~ 90 (98)
T 3gwk_C 76 QQLLKVADIIEQTDA 90 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555544433
No 8
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=95.60 E-value=0.54 Score=36.50 Aligned_cols=72 Identities=13% Similarity=0.332 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ------NKLDQIKKELDQMVKELDLTIKELNQI 134 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q------k~LdqIsK~Ldqisk~ld~isK~L~qI 134 (151)
++|+...+++++..+..+...+...+..+...+..+...+..+.+ ..+.++...+.+++..+..+.+...+|
T Consensus 2 i~qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (213)
T 3g67_A 2 IEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSI 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776666666666666666555554332 334444444444444444443333333
No 9
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=95.35 E-value=0.075 Score=33.65 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=45.1
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHH
Q psy18023 54 KECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTIKE 130 (151)
Q Consensus 54 ~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~isK~ 130 (151)
..-+||+..|.+..+.+.+.+..+.+....|..-...|. ..|.-...+ ....+....+.++...|+.|++.
T Consensus 5 ~~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~------~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 5 AEIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLE------GQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTD 78 (93)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877777776666665554442 122222111 33334444555555555555555
Q ss_pred HHHHHHHHH
Q psy18023 131 LNQIIKELN 139 (151)
Q Consensus 131 L~qIsk~l~ 139 (151)
|.++...+.
T Consensus 79 L~~~A~~~~ 87 (93)
T 4ioe_A 79 LKRIADKFR 87 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 10
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=95.21 E-value=0.19 Score=31.63 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=45.8
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 56 CKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKELDLTIKELN 132 (151)
Q Consensus 56 ~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~ld~isK~L~ 132 (151)
-+||+..|.+....+.+.+..|.++...|..-...|. ..|.-...+ ....+....+.++...|+.+++.|.
T Consensus 4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~------~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 77 (97)
T 2vs0_A 4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIA------ANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLN 77 (97)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888887777777777766666655544442 234332222 3444555556666666666665555
Q ss_pred HHHHHHH
Q psy18023 133 QIIKELN 139 (151)
Q Consensus 133 qIsk~l~ 139 (151)
++.....
T Consensus 78 ~~a~~y~ 84 (97)
T 2vs0_A 78 STADAVQ 84 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 11
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=94.99 E-value=0.52 Score=32.16 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQIIKELNQI 141 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qIsk~l~qI 141 (151)
.....+..+...+......+..+...+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 73 LAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 12
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=94.33 E-value=0.77 Score=35.11 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18023 123 ELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 123 ~ld~isK~L~qIsk~l~q 140 (151)
++...+..|.+.+..|.+
T Consensus 200 ~~~~~~~~L~~~a~~L~~ 217 (227)
T 1qu7_A 200 QSAAAAAALEEQASRLTE 217 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444433333
No 13
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=93.95 E-value=0.67 Score=33.23 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 71 DQIIKELDQIIKELDLIIKESNQVIK 96 (151)
Q Consensus 71 dQISK~LdQIsK~LdqISK~l~QiSk 96 (151)
++|....++|...++.|+..++++.+
T Consensus 43 ~ef~~~ve~i~~~i~~i~~~v~el~~ 68 (279)
T 3c98_B 43 DEFFEQVEEIRGFIDKIAENVEEVKR 68 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 14
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=91.86 E-value=1.2 Score=26.52 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q psy18023 64 DQIKKELDQIIKELDQIIKE----LDLIIKESNQVIKELNLIIKES 105 (151)
Q Consensus 64 DQIsKnLdQISK~LdQIsK~----LdqISK~l~QiSk~L~qISKel 105 (151)
.++...+..+.+.|.+..+. +..++..+..-+..+...+..+
T Consensus 40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l 85 (115)
T 3zrx_A 40 GILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMM 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444555544444444 4444444444444444444333
No 15
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=91.79 E-value=1.5 Score=27.45 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL 145 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l 145 (151)
|.+..+.+...+..++++...|......|.. ..=+.......+....+..+...|++|+..|.++....
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~ 86 (99)
T 3zbh_A 14 LRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATIL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333333333322 33344444444455555555555555555555554443
No 16
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=91.49 E-value=3.7 Score=31.31 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy18023 128 IKELNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 128 sK~L~qIsk~l~qI~K~l~q~~ 149 (151)
+.++...+..|.+....|.+.|
T Consensus 198 ~~~~~~~~~~L~~~a~~L~~~v 219 (227)
T 1qu7_A 198 VEQSAAAAAALEEQASRLTEAV 219 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666554
No 17
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=91.29 E-value=1.7 Score=27.18 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 76 ELDQIIKELDLIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ 147 (151)
Q Consensus 76 ~LdQIsK~LdqISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q 147 (151)
.|.+..+.+...+..+.+....|..-...|.. ..-+.......+....+......|++|++.|.++...+.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~ 88 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFRN 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543 4555566666666666677777777777777776665543
No 18
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=90.68 E-value=1.7 Score=25.91 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy18023 72 QIIKELDQIIKEL 84 (151)
Q Consensus 72 QISK~LdQIsK~L 84 (151)
++...+..+...|
T Consensus 41 ~l~~~~n~m~~~l 53 (115)
T 3zrx_A 41 ILAKSIERLRRSL 53 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.68 E-value=5.8 Score=32.11 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023 108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~~ 150 (151)
+.++++.++...+-+.++..-+.+..+.++++++++++.|..+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777777777777777777777654
No 20
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=90.56 E-value=2.7 Score=28.13 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------h----hhhhHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES----------N----QNKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel----------~----qk~LdqIsK~Ldqisk~ld~i 127 (151)
+++.+++.++++.+.+..+......+...+.+..+.+....+-- + ...++.+...+..+-..+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788877777777777777777777777776665411 1 123445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18023 128 IKELNQIIKELNQIIKELN 146 (151)
Q Consensus 128 sK~L~qIsk~l~qI~K~l~ 146 (151)
...++.+.+.+..+...++
T Consensus 84 ~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 21
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=90.33 E-value=4.3 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q psy18023 62 KLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKES 105 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel 105 (151)
+...+...+++++..-.+++..| .++.+.|..+.+.+....|..
T Consensus 70 ~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~ 114 (301)
T 2efk_A 70 SFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMH 114 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555 445555555555555544443
No 22
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=90.32 E-value=2.4 Score=27.02 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL 145 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l 145 (151)
..=+.......+....+..+...|++|++.|.++....
T Consensus 48 ~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~ 85 (98)
T 3gwk_C 48 STFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADII 85 (98)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555444
No 23
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=89.98 E-value=2.3 Score=30.36 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQ 93 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~Q 93 (151)
.|++|....++|...+++|+..+..+.+...+
T Consensus 41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~ 72 (279)
T 3c98_B 41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA 72 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777777777766666654443
No 24
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=89.84 E-value=4.7 Score=29.72 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q 140 (151)
+.+.|...++.+++.-.+++..| .++.+.+.+|.+.+....|...+ ....+.|.+......|...-+...+-.+.+..
T Consensus 77 aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~-~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~ 155 (305)
T 2efl_A 77 AFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFH-DGRKAQQHIETCWKQLESSKRRFERDCKEADR 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555 55556666665555555554432 22333444444444444333334444444433
No 25
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=89.45 E-value=4.4 Score=29.23 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 70 LDQIIKELDQIIKELDLIIKESNQV 94 (151)
Q Consensus 70 LdQISK~LdQIsK~LdqISK~l~Qi 94 (151)
|+.|-...+.|...|+.|...++++
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333333
No 26
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=88.79 E-value=5.9 Score=29.49 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH--------HHHHHHHHH---HHHHHHH
Q psy18023 66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELD--------QMVKELDLT---IKELNQI 134 (151)
Q Consensus 66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ld--------qisk~ld~i---sK~L~qI 134 (151)
+.+.|.|+++.+.-.+.-+..|-.-.+++.+.|.+.-..++ +...-|+-.|. .|..+||++ ...|-+|
T Consensus 13 ~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ll~QLn-~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~ 91 (109)
T 2ieq_A 13 VNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLR-HNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQT 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333 33444444444 444444443 3456666
Q ss_pred HHHHHHHHHHHHH
Q psy18023 135 IKELNQIIKELNQ 147 (151)
Q Consensus 135 sk~l~qI~K~l~q 147 (151)
..+|.+.+.-||.
T Consensus 92 ~~elq~~idn~n~ 104 (109)
T 2ieq_A 92 TVELQGLIDQINS 104 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6777666666553
No 27
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=88.78 E-value=4.8 Score=29.27 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 106 NQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ 147 (151)
Q Consensus 106 ~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q 147 (151)
+...|++|...|+.|.+---.--..++++....+++.++|..
T Consensus 120 DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~ 161 (175)
T 4abx_A 120 DPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAG 161 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 347788888888877543222112344444444444444443
No 28
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=88.47 E-value=4.1 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 70 LDQIIKELDQIIKELDLIIKESNQV 94 (151)
Q Consensus 70 LdQISK~LdQIsK~LdqISK~l~Qi 94 (151)
|+.|-...+.|..+|+.|...++++
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l 31 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEV 31 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444443333333
No 29
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=88.29 E-value=3.2 Score=25.83 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELN 146 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~ 146 (151)
|.+..+.+...+..+.++...|..-...|.. ..=+.......+....+..+...|.+|++.|.++.....
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~ 84 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQ 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555554444433 445666667777777777777777777777777766554
No 30
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=87.82 E-value=3.6 Score=25.93 Aligned_cols=33 Identities=6% Similarity=0.208 Sum_probs=18.4
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 56 CKVDFNKLDQIKKELDQIIKELDQIIKELDLII 88 (151)
Q Consensus 56 ~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqIS 88 (151)
-+|||..|++....+......|++....|..-.
T Consensus 3 i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v 35 (94)
T 3fav_B 3 QQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSL 35 (94)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999888888888777777666555554433
No 31
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=87.62 E-value=4.1 Score=26.30 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 55 ECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE 90 (151)
Q Consensus 55 ~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~ 90 (151)
.-+|||..|.+....++++...|.++...|+.-...
T Consensus 4 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~ 39 (101)
T 3fav_A 4 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGS 39 (101)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899888888888888887777776666654433
No 32
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=86.67 E-value=6.9 Score=27.90 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQI 80 (151)
Q Consensus 65 QIsKnLdQISK~LdQI 80 (151)
.|+.+|..|...+.++
T Consensus 13 ~i~~~i~~i~~~v~~L 28 (196)
T 1fio_A 13 QINRDLDKYDHTINQV 28 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444333333
No 33
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=86.51 E-value=4.2 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKE 90 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~ 90 (151)
|++|-.....|...|+.|...+++|.+-
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~ 65 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKK 65 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 34
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=86.15 E-value=5.1 Score=26.85 Aligned_cols=21 Identities=14% Similarity=0.506 Sum_probs=9.2
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q psy18023 61 NKLDQIKKELDQIIKELDQII 81 (151)
Q Consensus 61 ~~LDQIsKnLdQISK~LdQIs 81 (151)
+....|...|+.|...+++|.
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~ 32 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVK 32 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.76 E-value=9 Score=35.31 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=3.6
Q ss_pred HHhcCCccC
Q psy18023 21 RMFDGLTPV 29 (151)
Q Consensus 21 ~~~~~~~~~ 29 (151)
|.|--+.|.
T Consensus 841 rl~~klkpL 849 (1184)
T 1i84_S 841 XLFFXIXPL 849 (1184)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 333334443
No 36
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=85.65 E-value=8.6 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKES 105 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel 105 (151)
..+.+...++.++..-.+++..|.++.+.+.+|.+.+....|..
T Consensus 74 ~w~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~ 117 (276)
T 2v0o_A 74 VWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKT 117 (276)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555544444
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.54 E-value=13 Score=28.41 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKEL 124 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~l 124 (151)
+.++.++++++...+..
T Consensus 90 kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 90 RELRSLNIEEDIAKERS 106 (256)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555444444433
No 38
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=82.53 E-value=16 Score=28.85 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=29.9
Q ss_pred hhhhcccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023 54 KECKVDFN----KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN 106 (151)
Q Consensus 54 ~~~~~~~~----~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~ 106 (151)
+||-.|-. ++..+...++.+.+-|+.+.|....+...+...+......+..|.
T Consensus 33 ~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~ 89 (407)
T 4h8s_A 33 EEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLL 89 (407)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777643 445555555555555555555555555555555555555555553
No 39
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.50 E-value=17 Score=28.43 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18023 125 DLTIKELNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 125 d~isK~L~qIsk~l~qI~K~l~q~~~ 150 (151)
|+.-..--..+-.+.++..+||+.+|
T Consensus 119 DdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 119 DDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333444456667777777777665
No 40
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=81.16 E-value=19 Score=28.61 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLIIKESNQ---NKLDQIKKELD 118 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~L-dqISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ld 118 (151)
++.++|++.-..|.....+| ..+.++++++-..|.....++-. ..++.+...|.
T Consensus 41 ~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~ 98 (273)
T 3s84_A 41 KIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLR 98 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566666666666665555 45566666666666666665533 34444444443
No 41
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=80.72 E-value=20 Score=28.52 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy18023 133 QIIKELNQIIKEL 145 (151)
Q Consensus 133 qIsk~l~qI~K~l 145 (151)
.|..++..++..|
T Consensus 129 k~~~~leeLr~~l 141 (273)
T 3s84_A 129 KIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 42
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=80.70 E-value=15 Score=27.34 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q psy18023 66 IKKELDQIIKELDQIIKELDLIIKES-NQVIKELNLIIKES 105 (151)
Q Consensus 66 IsKnLdQISK~LdQIsK~LdqISK~l-~QiSk~L~qISKel 105 (151)
+..-.+.+...++.++..-.+++..| +++.+.|..|.++.
T Consensus 65 ~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~ 105 (290)
T 3i2w_A 65 TEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKEN 105 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666 56666677666654
No 43
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=79.88 E-value=8.1 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKES 91 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l 91 (151)
.|-++.+..+.+.+.|+++.++|++|+|+.
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~iekGF 51 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQQGF 51 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666666666666666666666665544
No 44
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=79.52 E-value=16 Score=26.80 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE 104 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe 104 (151)
++-+-+.+++-.+.+++|..=+..-++-=..-++.|..|++.
T Consensus 16 ~~~l~~r~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~ 57 (305)
T 2efl_A 16 FDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKK 57 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333322222222334444444444
No 45
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=79.43 E-value=10 Score=28.30 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy18023 74 IKELDQIIKELDLIIKESNQVIKELNLIIKESNQN 108 (151)
Q Consensus 74 SK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk 108 (151)
-|.|.++-++.+.+.+.|+++.+.+++|.|-.-++
T Consensus 10 lK~L~~veksv~~~~kkl~~~~~el~~iekGFL~k 44 (114)
T 1hx1_B 10 LKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPK 44 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34455555555555555555555566665554443
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.26 E-value=25 Score=28.36 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~QiSk~L~ 99 (151)
.+.++...+.++...+++..+.+.+..+.++
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444443333
No 47
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=78.04 E-value=14 Score=28.39 Aligned_cols=10 Identities=10% Similarity=0.441 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy18023 70 LDQIIKELDQ 79 (151)
Q Consensus 70 LdQISK~LdQ 79 (151)
.+.|...|.+
T Consensus 50 ~~~I~~~I~~ 59 (279)
T 2xhe_B 50 VKRIRDNIED 59 (279)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 48
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=76.93 E-value=8.5 Score=33.26 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy18023 81 IKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQM 120 (151)
Q Consensus 81 sK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqi 120 (151)
|.+|.++-.+|++.+-.+|+-..-.+|-+|++-+|.+.++
T Consensus 98 s~E~kd~~~Gl~~li~qiD~a~~la~~g~l~eAkk~a~~~ 137 (347)
T 3u8p_A 98 SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQL 137 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHh
Confidence 3455566666666666666666666666677666665544
No 49
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=75.92 E-value=14 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=21.7
Q ss_pred HhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 52 MEKECKVDFNKLDQIKKELDQIIKELDQIIKELDL 86 (151)
Q Consensus 52 ~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~Ldq 86 (151)
|-..-+|||..|++....|....+.+++....|+.
T Consensus 5 Ma~~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~ 39 (103)
T 4i0x_B 5 VESEFSFDLDHIEQVTSRARGFKEFVTENLDQLES 39 (103)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888777777766666555444443
No 50
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=75.26 E-value=22 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 116 ELDQMVKELDLTIKELNQIIKELNQIIKELN 146 (151)
Q Consensus 116 ~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~ 146 (151)
.|.++..|+.++...++-....++++..+++
T Consensus 228 ~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~ 258 (264)
T 3nvo_A 228 RMQDIADRLGRGLDEIDACIARTGIMADEIA 258 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 51
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=75.17 E-value=11 Score=22.45 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQI 80 (151)
Q Consensus 65 QIsKnLdQISK~LdQI 80 (151)
++...+.++...|.+.
T Consensus 41 ~l~~~~n~m~~~l~~~ 56 (114)
T 3zcc_A 41 ILAKSIERLRRSLKQL 56 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 52
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=74.94 E-value=22 Score=26.72 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHH
Q psy18023 60 FNKLDQIKKELDQIIKEL--DQIIKELDL-IIKESNQVIKEL 98 (151)
Q Consensus 60 ~~~LDQIsKnLdQISK~L--dQIsK~Ldq-ISK~l~QiSk~L 98 (151)
..++++++.+.+...+.| .++.++++. +...++.++..+
T Consensus 34 ~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~ 75 (191)
T 1nfn_A 34 WDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYK 75 (191)
T ss_dssp HHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666 555555532 333444444333
No 53
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=74.79 E-value=17 Score=27.13 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy18023 132 NQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 132 ~qIsk~l~qI~K~l~q~~~ 150 (151)
.++.+++.+++.+|..+++
T Consensus 146 ~~~~~~~eeLr~kL~p~~e 164 (165)
T 1gs9_A 146 KRLLRDADDLQKRLAVYQA 164 (165)
T ss_dssp HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhHHHHHHHhhhhcc
Confidence 4556666677777766554
No 54
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=74.05 E-value=21 Score=26.56 Aligned_cols=67 Identities=6% Similarity=-0.015 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHH
Q psy18023 60 FNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK-ESNQNKLDQIKKELDQMVKELDL 126 (151)
Q Consensus 60 ~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK-el~qk~LdqIsK~Ldqisk~ld~ 126 (151)
...|+|..+|+..-.-.|..-...|.++..-|.++.+-+-|-.- .++......|.+++.++..++..
T Consensus 18 ~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~ 85 (248)
T 2d4x_A 18 QAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMN 85 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666555554444321 12234444455555555444443
No 55
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.67 E-value=14 Score=23.12 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy18023 117 LDQMVKELDLTIK 129 (151)
Q Consensus 117 Ldqisk~ld~isK 129 (151)
||+|-..+|.+..
T Consensus 39 Ld~l~~~~d~~~~ 51 (65)
T 1gl2_D 39 IDDLANLVENTDE 51 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 56
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=73.09 E-value=29 Score=26.47 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy18023 109 KLDQIKKELDQMVKELDLTIKEL-NQIIKELNQ 140 (151)
Q Consensus 109 ~LdqIsK~Ldqisk~ld~isK~L-~qIsk~l~q 140 (151)
..+.|..+++.+++.-..++..| ++++..|..
T Consensus 80 aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~ 112 (337)
T 2x3v_A 80 AWGAMMTEADKVSELHQEVKNSLLNEDLEKVKN 112 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444 234444443
No 57
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=72.27 E-value=29 Score=26.89 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLI 87 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqI 87 (151)
|+.|-...+.|...|+.|...+.++
T Consensus 30 m~~F~~~v~~I~~~I~~I~~~v~~l 54 (267)
T 1dn1_B 30 MDEFFEQVEEIRGFIDKIAENVEEV 54 (267)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333333
No 58
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=71.99 E-value=33 Score=26.69 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy18023 66 IKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 66 IsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~i 127 (151)
|-|.|.++++.+.-.+-.|.+|-.-.|+=+..|++.-+.|+ +...-||-++.+|...||.+
T Consensus 27 FN~A~~~~~~g~~tts~AL~kiQ~VVN~q~~aL~~l~~qL~-~nFgAISssi~dIy~rLd~l 87 (149)
T 1wyy_A 27 FNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLS-SNFGAISSVLNDILSRLDKV 87 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444444444444444333 23344444444444444433
No 59
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=70.48 E-value=8.4 Score=25.01 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=24.3
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q psy18023 53 EKECKVDFNKLDQIKKELDQIIKELDQIIKEL 84 (151)
Q Consensus 53 ~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~L 84 (151)
+.+|++|-+++++|++.|.+=-+.|..+..-+
T Consensus 10 ~~~y~lD~~~~~eik~~L~~QQ~g~~~Li~iv 41 (51)
T 3t98_A 10 EEKYYIDADLLREIKQHLKQQQEGLSHLISII 41 (51)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999998888777665443
No 60
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=69.49 E-value=30 Score=25.16 Aligned_cols=18 Identities=6% Similarity=0.137 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQI 80 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQI 80 (151)
++-+-+.+++=.+.+++|
T Consensus 20 ~~~l~~~~~~g~~~~~el 37 (276)
T 2v0o_A 20 FDVLYHNMKHGQISTKEL 37 (276)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443333333
No 61
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=68.85 E-value=40 Score=27.84 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Q psy18023 59 DFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE-SNQNKLDQIKKELDQMVKELDLTI 128 (151)
Q Consensus 59 ~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe-l~qk~LdqIsK~Ldqisk~ld~is 128 (151)
+.+.|+|..+|+.+-.--|..-...|+++..-|.++-+-.-|-.-- +++.....|.+++.++..+|..|.
T Consensus 4 ~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 74 (398)
T 1io1_A 4 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 74 (398)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888887777665554322 333555666666666666666543
No 62
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=68.83 E-value=36 Score=26.00 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHH
Q psy18023 59 DFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK-ESNQNKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 59 ~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK-el~qk~LdqIsK~Ldqisk~ld~i 127 (151)
..+.++|..+|...-.-.|..-...|.++..-|..+-+-+-|-.- .+++.....|.+++.++..++..+
T Consensus 19 ~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~i 88 (239)
T 3pwx_A 19 ENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESS 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777666666554444321 233355566666666665555544
No 63
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=68.50 E-value=7.8 Score=28.88 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKE 90 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~ 90 (151)
|.++-+..+.+.+.|+++.+++.+|.|+
T Consensus 13 L~~veksv~~~~kkl~~~~~el~~iekG 40 (114)
T 1hx1_B 13 LKHLEKSVEKIADQLEELNKELTGIQQG 40 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444443
No 64
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=67.33 E-value=38 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESNQVI 95 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~QiS 95 (151)
.|.++.++.+.+.+.|+++.+++.+|+
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~ie 48 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQ 48 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 65
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=66.31 E-value=31 Score=24.28 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQI 141 (151)
Q Consensus 79 QIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI 141 (151)
.|-|.|..|++++.-.+..|.+|---.|+. =....+-+.|+.+...-||-++.+|...|+.+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQdVVN~q-~~aL~~L~~qL~~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQDVVNQN-AQALNTLVKQLSSNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 344555555666666666666655544442 12333344555555566666666665555544
No 66
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=66.26 E-value=13 Score=22.86 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 119 QMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 119 qisk~ld~isK~L~qIsk~l~q 140 (151)
.|-.+|+.|-|+|+.|-=+|+.
T Consensus 6 aikqelaaikkelaaikfelaa 27 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAA 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333
No 67
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=66.04 E-value=37 Score=29.33 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=41.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Q psy18023 58 VDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE-SNQNKLDQIKKELDQMVKELDLTI 128 (151)
Q Consensus 58 ~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe-l~qk~LdqIsK~Ldqisk~ld~is 128 (151)
-+.+.|+|..+|+.+-.--|..-.-.|+++..-|..+-+-.-|-.-- +++.....|.+++.|+..+|..|.
T Consensus 15 sqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ia 86 (425)
T 3v47_C 15 SNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVS 86 (425)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888778777888888887777776655554432 333555566666666665555554
No 68
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=65.46 E-value=39 Score=25.07 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=12.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q psy18023 81 IKELDL-IIKESNQVIKELNLIIKESNQ 107 (151)
Q Consensus 81 sK~Ldq-ISK~l~QiSk~L~qISKel~q 107 (151)
.+.|+. |+.+|+.++..++.+.+.+..
T Consensus 57 ~qel~~~l~~~ld~l~~~~~~l~~~L~P 84 (165)
T 1gs9_A 57 TQELRALMDETMKELKAYKSELEEQLTP 84 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344443 455555555554444444433
No 69
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=64.41 E-value=12 Score=22.99 Aligned_cols=25 Identities=44% Similarity=0.461 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 110 LDQIKKELDQMVKELDLTIKELNQI 134 (151)
Q Consensus 110 LdqIsK~Ldqisk~ld~isK~L~qI 134 (151)
|..|+.+|+.|-|+|+.|-=+|+.|
T Consensus 4 laaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 70
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=64.36 E-value=36 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18023 64 DQIKKELDQIIKELDQ 79 (151)
Q Consensus 64 DQIsKnLdQISK~LdQ 79 (151)
+.+.+.++.+.+.+++
T Consensus 174 ~~~~~~~~~~~~~l~~ 189 (258)
T 2yfa_A 174 QAALRQLDAALADTDN 189 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333433333333
No 71
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=64.29 E-value=16 Score=29.65 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=22.8
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy18023 57 KVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESN-QVIKELNLII 102 (151)
Q Consensus 57 ~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~-QiSk~L~qIS 102 (151)
+..|+.+-.+....+.+..+++.+.+.=..+...|. ++.+.|..+.
T Consensus 111 ~~~~~e~G~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~ 157 (287)
T 3g9g_A 111 AFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESV 157 (287)
T ss_dssp HCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSS
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444545555555555555555554444544443 4444444443
No 72
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=64.10 E-value=46 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 70 LDQIIKELDQIIKELDLIIKESNQV 94 (151)
Q Consensus 70 LdQISK~LdQIsK~LdqISK~l~Qi 94 (151)
|..|....+.|...|..|...+.++
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L 67 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQV 67 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444
No 73
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=63.68 E-value=44 Score=28.02 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=38.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHH
Q psy18023 58 VDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK-ESNQNKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 58 ~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK-el~qk~LdqIsK~Ldqisk~ld~i 127 (151)
-+.+.|+|..+|+.+-.--|..-...|+++..-|.++-+-+-|-.- .+++.....|.++++++..++..+
T Consensus 36 sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~i 106 (326)
T 3k8w_A 36 AQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRV 106 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766666666666666666666666554444321 122234444555555544444443
No 74
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=63.30 E-value=62 Score=26.62 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKELDLTIKEL-NQIIKELNQ 140 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~isK~L-~qIsk~l~q 140 (151)
+.++.+..++++++..-..++..| +++...|..
T Consensus 81 ~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~ 114 (486)
T 3haj_A 81 KAWMAFMSEAERVSELHLEVKASLMNDDFEKIKN 114 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444455555554444444444 334443333
No 75
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.31 E-value=63 Score=29.50 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=12.6
Q ss_pred cCChhHHHHhhhhhccc-cchHHHHHHHHHHH
Q psy18023 44 SNGIEEQEMEKECKVDF-NKLDQIKKELDQII 74 (151)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~~LDQIsKnLdQIS 74 (151)
.+|-+-|.+--+-..|| +.+..|+..+++++
T Consensus 46 PSGCrLQglLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 46 PSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CcccchhhhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 34444444433333333 22344444444443
No 76
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.21 E-value=84 Score=27.45 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=8.6
Q ss_pred chhccccccCChhHHHH
Q psy18023 36 ESEINLESSNGIEEQEM 52 (151)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ 52 (151)
+.+++.--.+|-+-|.+
T Consensus 41 DeDwG~kCPsGCrLqg~ 57 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGL 57 (390)
T ss_pred hhhccCCCCccchHHHH
Confidence 44455555555554443
No 77
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=60.72 E-value=46 Score=24.26 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhC
Q psy18023 138 LNQIIKELNQIVEE 151 (151)
Q Consensus 138 l~qI~K~l~q~~~~ 151 (151)
+++++.++++-|++
T Consensus 168 ~ee~k~kl~~~lee 181 (185)
T 3r2p_A 168 SDELRQRLAARLEA 181 (185)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666653
No 78
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=60.01 E-value=59 Score=25.27 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQII 142 (151)
Q Consensus 79 QIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~ 142 (151)
.|-|.|.++++++.-.+..|.+|-.-.|+. =...++-..|+.+...-||-++.+|...|+.+.
T Consensus 26 sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q-~~aL~~l~~qL~~nFgAISssi~dIy~rLd~le 88 (149)
T 1wyy_A 26 QFNKAISQIQESLTTTSTALGKLQDVVNQN-AQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 88 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777776665552 233444455666666677777777766666653
No 79
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=58.64 E-value=61 Score=25.00 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Q psy18023 110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKE---LNQI 148 (151)
Q Consensus 110 LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~---l~q~ 148 (151)
++++.+.++.+..++..+.+.++++...+.++... ++++
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66677777777777777777777777777766666 5543
No 80
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=58.60 E-value=76 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q psy18023 67 KKELDQIIKELDQIIKELDLIIKES-NQVIKELNLIIKE 104 (151)
Q Consensus 67 sKnLdQISK~LdQIsK~LdqISK~l-~QiSk~L~qISKe 104 (151)
..-.+.+...+++++..-.+++..| +++.+.|..|.++
T Consensus 80 ~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e 118 (486)
T 3haj_A 80 EKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 118 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444455554 4455555555554
No 81
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=58.51 E-value=54 Score=24.36 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy18023 110 LDQIKKELDQMVKELDLTIKEL 131 (151)
Q Consensus 110 LdqIsK~Ldqisk~ld~isK~L 131 (151)
++.+..+++.+++.-..++..|
T Consensus 69 w~~~~~~~e~~a~~h~~~a~~l 90 (290)
T 3i2w_A 69 WKGVLTESERISDVHMKIKDNL 90 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 82
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=57.69 E-value=39 Score=22.48 Aligned_cols=8 Identities=25% Similarity=0.489 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy18023 68 KELDQIIK 75 (151)
Q Consensus 68 KnLdQISK 75 (151)
.+|++++.
T Consensus 29 ~~Ld~Ls~ 36 (87)
T 1sfc_D 29 ENLEQVSG 36 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 83
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=57.62 E-value=47 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 70 LDQIIKELDQIIKELDLIIKESNQVIK 96 (151)
Q Consensus 70 LdQISK~LdQIsK~LdqISK~l~QiSk 96 (151)
+..|-...+.|...|..|...+.++.+
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~ 30 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDS 30 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 84
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=57.62 E-value=58 Score=24.45 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKEL 84 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~L 84 (151)
..+-+-+.+.+-.+.+++|.+=+
T Consensus 30 g~~~l~~r~~~g~~~~~el~~f~ 52 (312)
T 3abh_A 30 NYKRTVKRIDDGHRLCSDLMNCL 52 (312)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555555544444
No 85
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=57.54 E-value=48 Score=23.50 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=27.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHH
Q psy18023 82 KELD-LIIKESNQVIKELNLIIKESNQ----NKLDQIKKELDQMVKELDLTIK 129 (151)
Q Consensus 82 K~Ld-qISK~l~QiSk~L~qISKel~q----k~LdqIsK~Ldqisk~ld~isK 129 (151)
+.++ .+.+.++++.+.|+.......+ ..|++|...+.+..+.++.+..
T Consensus 48 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~Y~~~f~~~~~ 100 (258)
T 2yfa_A 48 DTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQ 100 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 5556666666666666555443 4566666666555555555444
No 86
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=57.05 E-value=19 Score=27.51 Aligned_cols=69 Identities=19% Similarity=0.335 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKL--DQIKKELDQMVKELDLTIKEL 131 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~L--dqIsK~Ldqisk~ld~isK~L 131 (151)
+-.+.+|++++.+-+.+..++-+.+++.+..+-..++......-...+ .+|....+.+++..+...+.|
T Consensus 74 v~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kIK~~~i~~~~Id~~y~~lv~~~~~~l~~l 144 (148)
T 3gn4_A 74 VGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKSSAVLLSAL 144 (148)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788877777788777777888888888887777654432222 234455555555555554444
No 87
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=57.04 E-value=12 Score=22.29 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQI 134 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qI 134 (151)
-|+|+|-||-..+|-....|.+|
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46666666666666666555554
No 88
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=56.26 E-value=62 Score=24.69 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhh
Q psy18023 134 IIKELNQIIKELNQIV 149 (151)
Q Consensus 134 Isk~l~qI~K~l~q~~ 149 (151)
+.+++.+++..|.-++
T Consensus 108 ~~~~~eelr~~L~P~~ 123 (243)
T 2a01_A 108 WQEEMELYRQKVEPLR 123 (243)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3344445554444433
No 89
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=56.04 E-value=57 Score=23.92 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHhhhh--hhhHHHHHHHHHHHHHHHHH
Q psy18023 61 NKLDQIKKELDQIIKEL-DQIIKELDLIIKESNQVIKELNLI----IKESNQ--NKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 61 ~~LDQIsKnLdQISK~L-dQIsK~LdqISK~l~QiSk~L~qI----SKel~q--k~LdqIsK~Ldqisk~ld~i 127 (151)
+.+++++..-.+++..| .++...|..+.+.+.+..|..... .|.+.. +.|..-+|..++..+.++..
T Consensus 76 ~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a 149 (301)
T 2efk_A 76 QEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKA 149 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555 455555555555555554443332 222222 44444555555555555443
No 90
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=54.11 E-value=87 Score=25.43 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--h-hhhHHHHHHHHHHHHHHHHHHHH
Q psy18023 86 LIIKESNQVIKELNLIIKESN--Q-NKLDQIKKELDQMVKELDLTIKE 130 (151)
Q Consensus 86 qISK~l~QiSk~L~qISKel~--q-k~LdqIsK~Ldqisk~ld~isK~ 130 (151)
+..+++..++.++...++.+. . ..-+.+++.|.+++++.+.+.+-
T Consensus 221 ~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l 268 (386)
T 4akv_A 221 GFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEM 268 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777776432 1 12345666666666666665543
No 91
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=53.85 E-value=75 Score=24.62 Aligned_cols=37 Identities=3% Similarity=-0.030 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy18023 68 KELDQIIKELDQIIKELDLIIKESN-QVIKELNLIIKE 104 (151)
Q Consensus 68 KnLdQISK~LdQIsK~LdqISK~l~-QiSk~L~qISKe 104 (151)
.-.+.+...+++++..-.+++..|. ++.+.|..|.|+
T Consensus 79 ~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~ 116 (320)
T 3m3w_A 79 KAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRG 116 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554445554443 355555555543
No 92
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=53.38 E-value=62 Score=25.56 Aligned_cols=58 Identities=7% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023 91 SNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148 (151)
Q Consensus 91 l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~ 148 (151)
++++.+.++.+.+.-.+.-++.++..|..+.+.+..+-+++.-++.-+.|=|.-||=+
T Consensus 362 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 362 LAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 3444444444444444445566666677777777777777777777777777777644
No 93
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=53.26 E-value=89 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHH
Q psy18023 87 IIKESNQVIKELNLIIKESNQ---NKLDQIKKELDQMVKEL 124 (151)
Q Consensus 87 ISK~l~QiSk~L~qISKel~q---k~LdqIsK~Ldqisk~l 124 (151)
+.+.++++-.-|.....++.. +++++....|..++.+|
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL 152 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKL 152 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544 56667776666666665
No 94
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=53.02 E-value=56 Score=22.85 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=42.8
Q ss_pred hhccccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy18023 56 CKVDFNKL------DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIK 129 (151)
Q Consensus 56 ~~~~~~~L------DQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK 129 (151)
++-||++| ..|..-++.+.+++++-.+. .++|........+=...-|.+++ ...|+...+.++..--
T Consensus 4 ~~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~----regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 4 MTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ----REALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIERLKL 76 (98)
T ss_dssp CCSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH----HTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHHHHH
Confidence 45577777 23444455555554444443 23333333333333344445555 3466666777777766
Q ss_pred HHHHHHHHHHHHH
Q psy18023 130 ELNQIIKELNQII 142 (151)
Q Consensus 130 ~L~qIsk~l~qI~ 142 (151)
+|-.+...|+.+.
T Consensus 77 el~K~q~~L~e~e 89 (98)
T 2ke4_A 77 EVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666654
No 95
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=52.49 E-value=44 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18023 71 DQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107 (151)
Q Consensus 71 dQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~q 107 (151)
..|...++.+.+.|.++++++.-++..+..+-.-.++
T Consensus 4 ~nit~a~~~~n~Ai~~~~~gf~tv~~Al~kiQdVVN~ 40 (109)
T 2ieq_A 4 NNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQ 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443333
No 96
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=51.91 E-value=93 Score=25.09 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy18023 61 NKLDQIKKELDQIIKELDQIIKELD-LIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMV-KELDLTIKELNQIIKEL 138 (151)
Q Consensus 61 ~~LDQIsKnLdQISK~LdQIsK~Ld-qISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqis-k~ld~isK~L~qIsk~l 138 (151)
.+.+.+...++++++.-.+++..|. ++...+..|.+.+....|.... ....+.+++.... ++|...-|.-.+-.+++
T Consensus 72 ~aW~~ll~ete~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~~~-~~~klqk~~~k~~~~~lekaKk~Y~~~cke~ 150 (406)
T 4dyl_A 72 QSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSE-QWQQLQQELTKTHSQDIEKLKSQYRALARDS 150 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555543 2344445555554444443322 2233444555545 45544444444444444
Q ss_pred HHHH
Q psy18023 139 NQII 142 (151)
Q Consensus 139 ~qI~ 142 (151)
..-+
T Consensus 151 e~A~ 154 (406)
T 4dyl_A 151 AQAK 154 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 97
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=51.41 E-value=87 Score=24.63 Aligned_cols=19 Identities=5% Similarity=0.073 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy18023 109 KLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 109 ~LdqIsK~Ldqisk~ld~i 127 (151)
.+.++..|+.++...++..
T Consensus 262 ~lrDv~d~~~~~~e~~~~~ 280 (363)
T 2iub_A 262 YFRDVYDHTIQIADTVETF 280 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554433
No 98
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=51.25 E-value=43 Score=22.54 Aligned_cols=8 Identities=0% Similarity=0.339 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy18023 68 KELDQIIK 75 (151)
Q Consensus 68 KnLdQISK 75 (151)
++|+++|.
T Consensus 30 ~~Ld~ls~ 37 (87)
T 1l4a_D 30 NNMKEVSS 37 (87)
T ss_dssp HHHHHHHT
T ss_pred HhHHHHHH
Confidence 44444443
No 99
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=51.14 E-value=92 Score=26.36 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=41.0
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHH
Q psy18023 57 KVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK-ESNQNKLDQIKKELDQMVKELDLTI 128 (151)
Q Consensus 57 ~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISK-el~qk~LdqIsK~Ldqisk~ld~is 128 (151)
+-+.+.|+|..+|...-.--|..-...|+++..-|..+-+-.-|-.- .++......|.++++++..++..|.
T Consensus 54 ~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 126 (494)
T 1ucu_A 54 TANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 126 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777776667777776666666554444322 1222344445555555555554443
No 100
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=50.34 E-value=64 Score=22.75 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLI---IKESNQVIKELNLI 101 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqI---SK~l~QiSk~L~qI 101 (151)
+.++...+.++-..+..+...++++ -..+..+.+.++-+
T Consensus 11 l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 11 LEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666666666 44455555555544
No 101
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=50.00 E-value=82 Score=23.90 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q psy18023 67 KKELDQIIKELDQIIKELDLIIKES-NQVIKELNLIIKES 105 (151)
Q Consensus 67 sKnLdQISK~LdQIsK~LdqISK~l-~QiSk~L~qISKel 105 (151)
..-.+.+...+++++..-.+++..| +++.+.|..|.++.
T Consensus 78 ~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~ 117 (337)
T 2x3v_A 78 ERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDA 117 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555 34556666665543
No 102
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=49.34 E-value=53 Score=21.50 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qIsk~l~q 140 (151)
.+.+-+.++--.|+.....|.+.-..|..
T Consensus 45 ~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 45 ALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444443333333
No 103
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=49.20 E-value=89 Score=24.08 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE 104 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKe 104 (151)
..+-+-+.+++-.+.+++|..=+..=+.-=.+-++.|..|+|.
T Consensus 30 g~~~L~~r~~~g~~~~~el~~f~keRa~IE~eYak~L~kLakk 72 (350)
T 3aco_A 30 NYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARR 72 (350)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555665555555544444422222222334444444443
No 104
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=49.13 E-value=8.5 Score=22.95 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDL 86 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~Ldq 86 (151)
-|+++|+||-...|-.-..|.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555555554444444433
No 105
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.70 E-value=55 Score=21.58 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 68 KELDQIIKELDQIIKELDLIIKESNQVIKEL 98 (151)
Q Consensus 68 KnLdQISK~LdQIsK~LdqISK~l~QiSk~L 98 (151)
|.++.+.+.++++...++.+......+...+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i 33 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKI 33 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333333
No 106
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=47.81 E-value=3.9 Score=26.59 Aligned_cols=25 Identities=8% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 109 KLDQIKKELDQMVKELDLTIKELNQ 133 (151)
Q Consensus 109 ~LdqIsK~Ldqisk~ld~isK~L~q 133 (151)
.+.++...+.+|...|......+.+
T Consensus 113 Ei~~L~~~~n~m~~~l~~~~~~~~~ 137 (163)
T 2f95_B 113 EIGDLYAAFDEMRQSVRTSLEDAKN 137 (163)
T ss_dssp -------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 107
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.77 E-value=48 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELNLIIKESNQ--NKLDQIKKELDQMVKELDLTIKEL 131 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~qISKel~q--k~LdqIsK~Ldqisk~ld~isK~L 131 (151)
++.....+++..+++..|...+..+...+.. ..-.+.-+...+|..+|.+.+-+|
T Consensus 27 le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 27 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555566666666665555 333344444555555555555444
No 108
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=47.32 E-value=98 Score=24.03 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy18023 110 LDQIKKELDQMVKELDLTIK 129 (151)
Q Consensus 110 LdqIsK~Ldqisk~ld~isK 129 (151)
|.++..++.++...++....
T Consensus 239 l~dv~~~~~~l~e~~~~~~e 258 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMSATYRE 258 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444333
No 109
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=46.89 E-value=1.1e+02 Score=24.65 Aligned_cols=55 Identities=15% Similarity=0.436 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQM 120 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqi 120 (151)
+.++.|-+++|.=--+..++.-++++.--+++.|-.|.-.- +..|.+|+--|..+
T Consensus 20 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~e-dddl~DIsdklgvL 74 (234)
T 3plt_A 20 ELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADN-DDDVSDVTDKLGVL 74 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHH
Confidence 45777888888777777888888888888888888887764 33555555444443
No 110
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=45.02 E-value=1.2e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.348 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 60 FNKLDQIKKELDQIIK----ELDQIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 60 ~~~LDQIsKnLdQISK----~LdQIsK~LdqISK~l~QiSk~L~ 99 (151)
|..+-.+...|..+.+ +++++.+++.++.+++..+.+.++
T Consensus 272 ~p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~ 315 (411)
T 1ux5_A 272 YPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVE 315 (411)
T ss_dssp CGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 355555555555555555555544
No 111
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=44.75 E-value=1.5e+02 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q psy18023 113 IKKELDQMVKELDLTIKE-LNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 113 IsK~Ldqisk~ld~isK~-L~qIsk~l~qI~K~l~q~~~ 150 (151)
|...+....+++...+.. +.++.+.+......++++++
T Consensus 452 i~~~f~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (695)
T 2j69_A 452 ITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITD 490 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333332 44555555555555555543
No 112
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=44.63 E-value=1.1e+02 Score=23.87 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDLIIKESNQVIKELNL 100 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~q 100 (151)
.+.+-|+.+.|....+...+...+....+++.+|..
T Consensus 32 ~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~ 67 (385)
T 2q13_A 32 AISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKE 67 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444344444444444444444
No 113
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.17 E-value=1.6e+02 Score=25.62 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy18023 75 KELDQIIKELDLI 87 (151)
Q Consensus 75 K~LdQIsK~LdqI 87 (151)
++|.++...|+++
T Consensus 100 ~~LqeLe~~l~~l 112 (464)
T 1m1j_B 100 PVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 114
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=42.94 E-value=1.2e+02 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy18023 117 LDQMVKELDLTIKEL 131 (151)
Q Consensus 117 Ldqisk~ld~isK~L 131 (151)
|.++..++.++...+
T Consensus 239 l~dv~~~~~~l~e~~ 253 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMS 253 (339)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 115
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=42.75 E-value=1.1e+02 Score=23.09 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELD---QIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 65 QIsKnLdQISK~Ld---QIsK~LdqISK~l~QiSk~L~ 99 (151)
.++..|...++.|. .+.+.|..+...+.+|.....
T Consensus 92 ~L~~~m~~~~~~l~~~s~~g~aL~~~g~a~~~la~~~~ 129 (256)
T 1zww_A 92 LLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKD 129 (256)
T ss_dssp HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444441 233334444444444443333
No 116
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=42.64 E-value=30 Score=17.90 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy18023 92 NQVIKELNLII 102 (151)
Q Consensus 92 ~QiSk~L~qIS 102 (151)
.++.+.+..++
T Consensus 10 ~~l~~~~~~i~ 20 (56)
T 2asw_A 10 IELSNTADKIA 20 (56)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 117
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=42.51 E-value=1.1e+02 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=6.7
Q ss_pred hhhhhccccchH
Q psy18023 53 EKECKVDFNKLD 64 (151)
Q Consensus 53 ~~~~~~~~~~LD 64 (151)
+..-.|||+..-
T Consensus 94 eQ~L~VDF~~FP 105 (228)
T 3q0x_A 94 DQGILVDFASFP 105 (228)
T ss_dssp TTTCCSCTTTHH
T ss_pred HcCeeeeHHHHH
Confidence 344567776543
No 118
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=41.79 E-value=1.3e+02 Score=24.44 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18023 131 LNQIIKELNQIIKELN 146 (151)
Q Consensus 131 L~qIsk~l~qI~K~l~ 146 (151)
|+.+...-++|.+.-.
T Consensus 313 L~~a~~~W~~l~~~a~ 328 (346)
T 2nrj_A 313 LNAAKDSWKTLRTDAV 328 (346)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3333344444444333
No 119
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=41.41 E-value=72 Score=20.80 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 116 ELDQMVKELDLTIKELNQIIKELNQI 141 (151)
Q Consensus 116 ~Ldqisk~ld~isK~L~qIsk~l~qI 141 (151)
-||.|...+|.+...|..--+.+..+
T Consensus 48 lLd~l~~~~d~~~~~L~~~~~r~~~~ 73 (82)
T 2nps_D 48 MLEDFSHELESTQSRLDNVMKKLAKV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 120
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=41.09 E-value=70 Score=20.58 Aligned_cols=9 Identities=44% Similarity=0.708 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy18023 67 KKELDQIIK 75 (151)
Q Consensus 67 sKnLdQISK 75 (151)
-.||++++.
T Consensus 9 D~nLd~l~~ 17 (64)
T 3b5n_D 9 DRNLDQIQQ 17 (64)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 344444443
No 121
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=40.98 E-value=1.4e+02 Score=25.25 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=11.7
Q ss_pred chhccccccCChhHHHHhhh
Q psy18023 36 ESEINLESSNGIEEQEMEKE 55 (151)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ 55 (151)
+..|.+..+.|..+.|+++-
T Consensus 496 ~~~i~i~~~~~ls~~ei~~~ 515 (605)
T 4b9q_A 496 EQKITIKASSGLNEDEIQKM 515 (605)
T ss_dssp EECCEEESCCSCCHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHH
Confidence 34455556667776666543
No 122
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=40.61 E-value=34 Score=21.73 Aligned_cols=25 Identities=4% Similarity=0.105 Sum_probs=4.4
Q ss_pred hhccccchHHHHHHHHHHHHHHHHH
Q psy18023 56 CKVDFNKLDQIKKELDQIIKELDQI 80 (151)
Q Consensus 56 ~~~~~~~LDQIsKnLdQISK~LdQI 80 (151)
-+|||..|++....|....+.+...
T Consensus 4 i~v~~~~~~~~a~~i~~~~~~i~~~ 28 (96)
T 3h6p_C 4 IMYNYPAMMAHAGDMAGYAGTLQSL 28 (96)
T ss_dssp ----------------CHHHHHHHH
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHH
Confidence 4678877777666665555554443
No 123
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.39 E-value=75 Score=20.73 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 114 KKELDQMVKELDLTIKELNQIIKELNQIIKEL 145 (151)
Q Consensus 114 sK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l 145 (151)
..+++.+.|-+.++--.|+.....|.+.-.+|
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333333
No 124
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=40.23 E-value=1.4e+02 Score=23.77 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhh--hh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 87 IIKESNQVIKELNLIIKES--NQ-NKLDQIKKELDQMVKELDLTIKELN 132 (151)
Q Consensus 87 ISK~l~QiSk~L~qISKel--~q-k~LdqIsK~Ldqisk~ld~isK~L~ 132 (151)
+.+....++.+|..++..+ ++ ..=+.+++.|.+++.+.+.+.+-.+
T Consensus 202 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~ 250 (366)
T 3dyt_A 202 LPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVA 250 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666532 11 1123456666666666666655544
No 125
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=39.61 E-value=1.1e+02 Score=26.39 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy18023 130 ELNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 130 ~L~qIsk~l~qI~K~l~q~~ 149 (151)
....|-.++.|++++|+.|.
T Consensus 67 DR~aIq~Ei~qL~~eI~~Ia 86 (425)
T 3v47_C 67 DLKSIQDEIQQRLEEIDRVS 86 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666554
No 126
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=39.39 E-value=1.7e+02 Score=24.66 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIK-----------ELDLIIKESNQVIKELNLIIKESNQ---------NKLDQIKKELDQMV 121 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK-----------~LdqISK~l~QiSk~L~qISKel~q---------k~LdqIsK~Ldqis 121 (151)
.+-.+.++...+++.++|++- .=-.|+..|..=..+|+|..+-.++ ..|.+|..-|.+|-
T Consensus 13 ~~~~l~~~~~~l~~~~~~lSSG~rIn~asDDpag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~r 92 (494)
T 1ucu_A 13 TQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVR 92 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666652 1133445555555555555555544 45566666665554
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHhhh
Q psy18023 122 KELDLT------IKELNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 122 k~ld~i------sK~L~qIsk~l~qI~K~l~q~~~ 150 (151)
.-+-+- ......|-++++++.++|+.|..
T Consensus 93 elavqaangt~s~~dr~ai~~Ei~~l~~ei~~ian 127 (494)
T 1ucu_A 93 ELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSG 127 (494)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222 13455677788888888877653
No 127
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=39.27 E-value=1.6e+02 Score=24.08 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=34.1
Q ss_pred ccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy18023 58 VDFNKLDQIKKELDQIIKEL--DQIIKELDLIIKESNQV-IKELNLIIKESNQNKLDQIKKELDQMVK 122 (151)
Q Consensus 58 ~~~~~LDQIsKnLdQISK~L--dQIsK~LdqISK~l~Qi-Sk~L~qISKel~qk~LdqIsK~Ldqisk 122 (151)
|-.|.+.|+..-|..+-+.| +++...+..+.+++.+- ..-|+..+.-+..+-...|.|++-+|+.
T Consensus 120 v~lNNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~ 187 (341)
T 3swh_A 120 ILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGD 187 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999988888888877 34433333333332221 1112222222233455566666655553
No 128
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=38.69 E-value=1.2e+02 Score=22.66 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESN-QVIKELNLIIKE 104 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~-QiSk~L~qISKe 104 (151)
-.+.|...+++++..-.+++..|. ++.+.|..|.++
T Consensus 89 aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~ 125 (312)
T 3abh_A 89 AWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554 455555555544
No 129
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=38.57 E-value=1.6e+02 Score=23.99 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy18023 89 KESNQVIKELNLIIKESN 106 (151)
Q Consensus 89 K~l~QiSk~L~qISKel~ 106 (151)
..+++.+..|.++.+..+
T Consensus 78 ~~~n~~~~~L~~~~~~~n 95 (463)
T 2d4y_A 78 NQFKTTDQYLRDQDKQVN 95 (463)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 130
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=38.38 E-value=66 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=16.5
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 51 EMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLI 87 (151)
Q Consensus 51 ~~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqI 87 (151)
.+++-+.+|- ++..+...|....-.|+.+...|...
T Consensus 78 ~L~~l~~~d~-~l~~~~e~l~~a~~~l~d~~~~L~~y 113 (175)
T 4abx_A 78 ALNAGAKYDE-TVMQLQNELRAALESVQAIAGELRDV 113 (175)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444442 24444445555444555554444443
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.37 E-value=1.7e+02 Score=24.57 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 82 KELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 82 K~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q 140 (151)
..++++-..-|++||.+-+..+.- ...+++..+..++...+..+-+.+.++-..+.+
T Consensus 45 ~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 45 KEINRLRHERNKIAVEIGKRRKKG--EPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555444432221 223444444444444444444444444444333
No 132
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=38.34 E-value=84 Score=23.36 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy18023 87 IIKESNQVIKELNLIIKE 104 (151)
Q Consensus 87 ISK~l~QiSk~L~qISKe 104 (151)
++..++.|...++.+++.
T Consensus 99 L~~~lDdI~D~ie~~a~~ 116 (227)
T 3l39_A 99 LASCMDDVIDGINSSAKR 116 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 133
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=38.16 E-value=1.4e+02 Score=23.36 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy18023 119 QMVKEL 124 (151)
Q Consensus 119 qisk~l 124 (151)
++..|+
T Consensus 265 Dv~d~~ 270 (363)
T 2iub_A 265 DVYDHT 270 (363)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 134
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=37.98 E-value=1e+02 Score=21.62 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~i 127 (151)
.|-|.|..|++.+.-.+-.|.+|-.-.|+=+..|++.-+.|+ +...-||-++.+|...||.+
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~-~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLS-SNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666666666666665554443 33455666665555555543
No 135
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=37.68 E-value=1.5e+02 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~ 99 (151)
++++.+++.++.+++..+.+.++
T Consensus 283 ~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 283 AENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 136
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=37.12 E-value=1.5e+02 Score=23.34 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.0
Q ss_pred HHHHHhcCCccCCCCCc
Q psy18023 18 ALFRMFDGLTPVTDGST 34 (151)
Q Consensus 18 ~~~~~~~~~~~~~~~~~ 34 (151)
|+..--=||+|..||.+
T Consensus 105 AI~~S~LglnP~~dG~~ 121 (209)
T 4gfq_A 105 AILKADLGLNPSNDGTV 121 (209)
T ss_dssp HHHHHTSSCCCEECSSC
T ss_pred HHHHcCCCCCCCcCCCc
Confidence 45555569999999986
No 137
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=36.95 E-value=1.5e+02 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDLIIKESNQVIKEL 98 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L 98 (151)
.+.+.|+.+.|....+...+...+......+++|
T Consensus 55 ~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l 88 (407)
T 4h8s_A 55 TLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQL 88 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 138
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=36.57 E-value=19 Score=26.97 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 76 ELDQIIKELDLIIKESNQVIKELN 99 (151)
Q Consensus 76 ~LdQIsK~LdqISK~l~QiSk~L~ 99 (151)
++-.+...||.|...++.++..|.
T Consensus 95 DI~~L~~~lDdI~D~ie~~a~~l~ 118 (227)
T 3l39_A 95 DIHDLASCMDDVIDGINSSAKRIV 118 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555554
No 139
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=36.24 E-value=1.1e+02 Score=24.53 Aligned_cols=23 Identities=4% Similarity=0.320 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELD 85 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~Ld 85 (151)
++++..++.++.+.|..+.++++
T Consensus 293 ~~~l~~d~~~L~~~l~~v~~~l~ 315 (411)
T 1ux5_A 293 IEQLVNDCKDFSQSIVNVERSVE 315 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 140
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=35.95 E-value=1.2e+02 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKES 91 (151)
Q Consensus 77 LdQIsK~LdqISK~l 91 (151)
|+++.--++|+..++
T Consensus 13 LEs~R~Rl~qL~~Sl 27 (200)
T 4h63_H 13 LEAIRHRIAQIVQSL 27 (200)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 141
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=35.95 E-value=83 Score=19.94 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy18023 82 KELDLIIKESNQVIKELNLII 102 (151)
Q Consensus 82 K~LdqISK~l~QiSk~L~qIS 102 (151)
..+..+...++++...|+.-.
T Consensus 17 ~~~~~~~~~l~~~l~~l~~~~ 37 (101)
T 3fav_A 17 GNFERISGDLKTQIDQVESTA 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 142
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.80 E-value=92 Score=23.75 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 62 KLDQIKKELDQIIKELDQIIKELDLIIKES 91 (151)
Q Consensus 62 ~LDQIsKnLdQISK~LdQIsK~LdqISK~l 91 (151)
.|.+|.+.++++-+...++-.+..+|.+..
T Consensus 3 nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~ 32 (129)
T 3f6n_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELL 32 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666655555555555554443
No 143
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=35.74 E-value=1.2e+02 Score=21.62 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 70 LDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL 145 (151)
Q Consensus 70 LdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l 145 (151)
|..|..+|.+|-..| -..++.++...+..+ +-.+.+-+.....+.+..+.+......-++.+..|..-++-|
T Consensus 11 lr~Fa~~L~~F~d~L---q~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vl 82 (94)
T 3fx7_A 11 VREFVGHLERFKELL---REEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVL 82 (94)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence 444455555554333 334555566666664 555566666666666666666666666666666666655544
No 144
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.23 E-value=2.2e+02 Score=24.22 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLI 101 (151)
Q Consensus 63 LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qI 101 (151)
|....++++.=...|+.+-+++.+-+....+..+++...
T Consensus 29 L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 29 FNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445555555555555555555555443
No 145
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=33.91 E-value=1.5e+02 Score=22.15 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 66 IKKELDQIIKELD---QIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELN 132 (151)
Q Consensus 66 IsKnLdQISK~Ld---QIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~ 132 (151)
++..|.+.++.|. .+.+-|..+...+.+|.......-....++-|+.+.+-|+.-.+++....|.|+
T Consensus 77 L~~~m~~~~~~l~~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle 146 (240)
T 2z0v_A 77 LGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLE 146 (240)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555442 344444444444444444444443333444444444444333333333333333
No 146
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.25 E-value=2e+02 Score=23.46 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy18023 129 KELNQIIKELNQ 140 (151)
Q Consensus 129 K~L~qIsk~l~q 140 (151)
+++|.+.+.+++
T Consensus 103 ~~iN~l~~qIa~ 114 (463)
T 2d4y_A 103 AQINNYAKQIAN 114 (463)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 147
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=33.06 E-value=54 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.3
Q ss_pred cCChhHHHHhhhhhcccc-chHHHHHHHHHHHH
Q psy18023 44 SNGIEEQEMEKECKVDFN-KLDQIKKELDQIIK 75 (151)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~-~LDQIsKnLdQISK 75 (151)
...+.+.++|++|+|-+. +-+||....+...+
T Consensus 99 ~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~ 131 (187)
T 3tl4_X 99 GEASTKMGMNENSGVGIEITEDQVRNYVMQYIQ 131 (187)
T ss_dssp GGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHH
Confidence 467899999999999875 77888888777664
No 148
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=32.52 E-value=49 Score=21.00 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy18023 117 LDQMVKELD 125 (151)
Q Consensus 117 Ldqisk~ld 125 (151)
+|+|++.+|
T Consensus 33 iDdM~~RID 41 (48)
T 3ci9_A 33 IDDMSSRID 41 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 333333333
No 149
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.44 E-value=2.4e+02 Score=24.46 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 80 IIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 80 IsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~q 140 (151)
+...++++-..-|.+||.+-+..|.- ...+.+..+..++...+..+-+.+.++...+.+
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~--~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAK--EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544433321 123344444444444444444444444444443
No 150
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=31.72 E-value=1.7e+02 Score=22.23 Aligned_cols=11 Identities=0% Similarity=-0.124 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy18023 71 DQIIKELDQII 81 (151)
Q Consensus 71 dQISK~LdQIs 81 (151)
+...+.++++.
T Consensus 29 ~~~~~kl~~~n 39 (137)
T 1t7s_A 29 LSNLQKAYDLN 39 (137)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 33333333333
No 151
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=31.68 E-value=1.4e+02 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18023 123 ELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 123 ~ld~isK~L~qIsk~l~q 140 (151)
+|..|.+.|..|.+.|+.
T Consensus 65 tl~lil~tL~~~nkRLDk 82 (85)
T 2ba2_A 65 TLQLILEALQGINKRLDN 82 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444444444444444443
No 152
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=31.25 E-value=51 Score=19.77 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy18023 130 ELNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 130 ~L~qIsk~l~qI~K~l~q~~~ 150 (151)
.|..+-+.+.+|-++||+|++
T Consensus 11 Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 11 RVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888764
No 153
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=30.21 E-value=1.9e+02 Score=22.24 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESN-QVIKELNLIIKE 104 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~-QiSk~L~qISKe 104 (151)
-.+.|...+++++..-.+++..|. ++.+.|..|.++
T Consensus 89 aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e 125 (350)
T 3aco_A 89 AWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443 455555555543
No 154
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.04 E-value=2.3e+02 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 126 LTIKELNQIIKELNQIIKELNQ 147 (151)
Q Consensus 126 ~isK~L~qIsk~l~qI~K~l~q 147 (151)
.+.+.+..+-..+.++..+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443
No 155
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.04 E-value=1.7e+02 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy18023 132 NQIIKELNQIIKELNQIV 149 (151)
Q Consensus 132 ~qIsk~l~qI~K~l~q~~ 149 (151)
.+--..+.+.+|+|+..+
T Consensus 127 K~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 127 KQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344556666666544
No 156
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.88 E-value=1.5e+02 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 69 ELDQIIKELDQIIKELDLIIKESNQVI 95 (151)
Q Consensus 69 nLdQISK~LdQIsK~LdqISK~l~QiS 95 (151)
+++.....+++.-..+..+...+..+.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444444444444444433
No 157
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=29.84 E-value=1.8e+02 Score=23.55 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 64 DQIKKELDQIIKELDQIIKELDLIIK 89 (151)
Q Consensus 64 DQIsKnLdQISK~LdQIsK~LdqISK 89 (151)
+.|+|..+.....+.+|-+++..-.+
T Consensus 6 ~~~~~~~~~y~~~i~~ik~~v~~~~~ 31 (297)
T 3pev_B 6 DKISKMFWHYKDKIAQIKQDIVLPIK 31 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666666666654444
No 158
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=29.79 E-value=1.6e+02 Score=21.21 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 111 DQIKKELDQMVKELDLTIKELNQ 133 (151)
Q Consensus 111 dqIsK~Ldqisk~ld~isK~L~q 133 (151)
+.+.+++.+|.+.+-...+.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~ 138 (227)
T 2olt_A 116 QALQVPFIAYLQRCIDAVGLAQQ 138 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333
No 159
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.76 E-value=1.4e+02 Score=20.82 Aligned_cols=86 Identities=14% Similarity=0.296 Sum_probs=51.2
Q ss_pred ccccchH-HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhh--hhhHHHH-----------
Q psy18023 58 VDFNKLD-QIKKELDQIIKELDQIIKELDL---------IIKESNQVIKELNLIIKESNQ--NKLDQIK----------- 114 (151)
Q Consensus 58 ~~~~~LD-QIsKnLdQISK~LdQIsK~Ldq---------ISK~l~QiSk~L~qISKel~q--k~LdqIs----------- 114 (151)
.+|++|- .|+.++-+|.-++.+|.+.+.+ +.+.+.++....++..|+.+. |.|..+-
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~ 89 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQ 89 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 4566653 4777788888777777777644 455666666666666666665 4444431
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 115 -KELDQMVKELDLTIKELNQIIKELNQIIK 143 (151)
Q Consensus 115 -K~Ldqisk~ld~isK~L~qIsk~l~qI~K 143 (151)
=..+.+++..-...++...+-+..++..|
T Consensus 90 k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek 119 (130)
T 2dnx_A 90 RLQKERLMNDFSAALNNFQAVQRRVSEKEK 119 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444555555555555555555555544
No 160
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.69 E-value=1e+02 Score=19.03 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18023 116 ELDQMVKELDLTIKELN 132 (151)
Q Consensus 116 ~Ldqisk~ld~isK~L~ 132 (151)
...+|...|+.|...|.
T Consensus 60 ~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 60 TATELNNALQNLARTIS 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 161
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=29.63 E-value=1.5e+02 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 110 LDQIKKELDQMVKELDLTIKELNQII 135 (151)
Q Consensus 110 LdqIsK~Ldqisk~ld~isK~L~qIs 135 (151)
|.++..|+.++...++....-++++.
T Consensus 229 l~Dv~d~~~~~~e~~~~~re~l~~l~ 254 (264)
T 3nvo_A 229 MQDIADRLGRGLDEIDACIARTGIMA 254 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 162
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=29.45 E-value=1.6e+02 Score=21.27 Aligned_cols=28 Identities=4% Similarity=0.203 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKELDLTIKELNQII 135 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~isK~L~qIs 135 (151)
..+.++..|+.++...++-....++.+.
T Consensus 210 ~~~rdv~d~~~~~~e~i~~~re~~~~l~ 237 (252)
T 3ck6_A 210 HQYRFAHNNITRINETIEFYLGEVALFQ 237 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555555555554443
No 163
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=29.28 E-value=1.8e+02 Score=22.83 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=14.0
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q psy18023 53 EKECKVDFNKLDQIKKELDQIIKELDQIIKEL 84 (151)
Q Consensus 53 ~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~L 84 (151)
++-.+|+ ++++.+++.++.+.+..+.+++
T Consensus 205 ~~Askvs---~~~l~~~l~~l~~~~~~~~~~l 233 (340)
T 1v9d_A 205 EKASRVS---AENLQKSLDQMKKQIADVERDV 233 (340)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554 3444455555555555444444
No 164
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=28.85 E-value=1.7e+02 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy18023 131 LNQIIKELNQIIKELNQI 148 (151)
Q Consensus 131 L~qIsk~l~qI~K~l~q~ 148 (151)
...|..++.++.++|..|
T Consensus 69 r~~i~~e~~~l~~~i~~~ 86 (248)
T 2d4x_A 69 RASLATDLQGIRDQLMNL 86 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555554444
No 165
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=28.82 E-value=2.5e+02 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELNLI 101 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~qI 101 (151)
++++.+++.++.+++..+-+.++..
T Consensus 294 ~~~l~~~~~~L~~~l~~v~~~l~~~ 318 (483)
T 2j1d_G 294 MTELDKEISTLRSGLKAVETELEYQ 318 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555554444443
No 166
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=28.46 E-value=22 Score=26.75 Aligned_cols=6 Identities=0% Similarity=-0.136 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy18023 90 ESNQVI 95 (151)
Q Consensus 90 ~l~QiS 95 (151)
+++.+-
T Consensus 110 ~~e~lr 115 (216)
T 2lem_A 110 DVELYR 115 (216)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 167
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=28.33 E-value=2e+02 Score=22.06 Aligned_cols=19 Identities=11% Similarity=0.431 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy18023 131 LNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 131 L~qIsk~l~qI~K~l~q~~ 149 (151)
+..++..+..|.+.|.+++
T Consensus 149 I~KVi~lv~~vE~~L~~ll 167 (214)
T 1kmi_Z 149 IKRMMDVIQEIERQLLMVL 167 (214)
T ss_dssp HHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555443
No 168
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=28.27 E-value=1.3e+02 Score=19.75 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 91 SNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKEL 138 (151)
Q Consensus 91 l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l 138 (151)
|.|||++.+.-.|+.-..|-.--...|-.....|..--..+.|.-++.
T Consensus 1 mkqwseeverklkefvrrhqeitqetlheyaqklglnqqaieqffref 48 (52)
T 1y66_A 1 MKQWSEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFREF 48 (52)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 345666665555554443322222233333333433333344444443
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=28.04 E-value=2.9e+02 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy18023 134 IIKELNQIIKELNQI 148 (151)
Q Consensus 134 Isk~l~qI~K~l~q~ 148 (151)
|...|.+|-..|+.+
T Consensus 674 ~~~~~~~~~~~~~~~ 688 (695)
T 2j69_A 674 VIAQLQKIEAAYSNL 688 (695)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 170
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=27.82 E-value=2.7e+02 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy18023 130 ELNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 130 ~L~qIsk~l~qI~K~l~q~~ 149 (151)
....|-.++++++++|..|.
T Consensus 88 DR~aIa~Ei~qL~~eI~~iA 107 (326)
T 3k8w_A 88 DRDALQAEVTQLQSEIQRVA 107 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555566665555553
No 171
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=27.64 E-value=2.2e+02 Score=22.27 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhh
Q psy18023 64 DQIKKELDQIIKELDQIIKELDLIIKES-----NQVIKELNLIIKESN 106 (151)
Q Consensus 64 DQIsKnLdQISK~LdQIsK~LdqISK~l-----~QiSk~L~qISKel~ 106 (151)
..|+.-|.+++.....|...|..+.+.+ ...-+.++.|.|..+
T Consensus 73 ~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~v~ 120 (253)
T 2ykt_A 73 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLS 120 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4666777777776666666666555552 333344444444444
No 172
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=27.58 E-value=1.7e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELN 146 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~ 146 (151)
.|...|+++...+|.+...+.+-...|.++++.|=
T Consensus 380 ~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL 414 (464)
T 2y7c_A 380 EIVRRVEQLFAYADTIEKQVNNALARVNNLTQSIL 414 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666555566666666653
No 173
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.04 E-value=2.7e+02 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQIIKELNQ 140 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qIsk~l~q 140 (151)
++..+..++...+..+-+.+.++-..+.+
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 174
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.23 E-value=2.6e+02 Score=22.66 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 65 QIKKELDQIIKELDQIIKELDLIIKES 91 (151)
Q Consensus 65 QIsKnLdQISK~LdQIsK~LdqISK~l 91 (151)
++.+.+.++.+...+....++.|...+
T Consensus 190 ~~~~~~~~l~~~~~~~~~~l~~l~~ql 216 (517)
T 4ad8_A 190 EAVSRLERLQASQRERARQIDLLAFQV 216 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 175
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.07 E-value=2.4e+02 Score=23.06 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy18023 95 IKELNLIIK 103 (151)
Q Consensus 95 Sk~L~qISK 103 (151)
.+.|+|+.-
T Consensus 42 ~~~l~~~~~ 50 (267)
T 3htk_C 42 DETINQLVD 50 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 334444443
No 176
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.63 E-value=2e+02 Score=21.56 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELN 146 (151)
Q Consensus 112 qIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~ 146 (151)
.|-.-||.+...+|.++..+.+..+.+.+.++.|=
T Consensus 167 ~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll 201 (464)
T 2y7c_A 167 IIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVL 201 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777777776666666666553
No 177
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=25.58 E-value=3.6e+02 Score=28.01 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy18023 128 IKELNQIIKELNQIIKELNQIVE 150 (151)
Q Consensus 128 sK~L~qIsk~l~qI~K~l~q~~~ 150 (151)
...|..+...|..|.|.|+..+|
T Consensus 362 ~~~L~~~~~~Le~iqk~L~~yLe 384 (2695)
T 4akg_A 362 DTTLKLTIDSLKMIKSSLSTFLE 384 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999987765
No 178
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.48 E-value=1.1e+02 Score=17.94 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 125 DLTIKELNQIIKELNQIIKELN 146 (151)
Q Consensus 125 d~isK~L~qIsk~l~qI~K~l~ 146 (151)
|..-|+|.++-..|..++|+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666677777664
No 179
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=24.71 E-value=2e+02 Score=23.26 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=4.3
Q ss_pred hhHHHHHHHHH
Q psy18023 109 KLDQIKKELDQ 119 (151)
Q Consensus 109 ~LdqIsK~Ldq 119 (151)
++..|...|.+
T Consensus 61 qi~~i~~~L~~ 71 (297)
T 3pev_B 61 QLFKIQNELTQ 71 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 180
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=24.31 E-value=1.8e+02 Score=20.21 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 76 ELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELN 139 (151)
Q Consensus 76 ~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~ 139 (151)
+|..|+..+.+.-++..++...|.--. ..+...-.|...+-+++-.+|..+.-.|..=++.|+
T Consensus 9 sL~~ID~~i~sLL~~as~~i~tls~~k-~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~Ld 71 (86)
T 3r84_A 9 SLNDIETQLCSMLQEASQVTFIFGELK-RGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLD 71 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-CCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777665533 233455567777777777777766666655555554
No 181
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.78 E-value=1.6e+02 Score=19.31 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKELDLT 127 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~i 127 (151)
..+..+.+.|+++-..|+..
T Consensus 56 ~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 56 EQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 182
>1ax8_A Obesity protein, leptin; helical cytokine, hematopoietic factor, diabetes, C; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=23.45 E-value=2.4e+02 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 61 NKLDQIKKELDQI-----IKELDQIIKELDLIIKESNQVIK 96 (151)
Q Consensus 61 ~~LDQIsKnLdQI-----SK~LdQIsK~LdqISK~l~QiSk 96 (151)
.||+|.=....|| +.++.||+.||.-.---|+-|..
T Consensus 52 ssm~~TL~~yQ~iL~sLp~~~v~QI~~DlsnLr~lL~~l~~ 92 (146)
T 1ax8_A 52 SKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAF 92 (146)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 34455555555444444444443
No 183
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=23.38 E-value=2.2e+02 Score=20.71 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKE------------LNQIIKE 144 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~------------l~qI~K~ 144 (151)
.|.+..-++.+.+.++++.+.+-.=...-.-..|-++++.|-.+.+.+.....-|+.+.+. +.++.-.
T Consensus 181 vd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~dh 260 (269)
T 2bbh_A 181 VDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDH 260 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHH
Q ss_pred HHHhhh
Q psy18023 145 LNQIVE 150 (151)
Q Consensus 145 l~q~~~ 150 (151)
+.|+++
T Consensus 261 ~~r~~e 266 (269)
T 2bbh_A 261 TIQIAD 266 (269)
T ss_dssp ------
T ss_pred HHHHHH
No 184
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.36 E-value=4.1e+02 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.358 Sum_probs=16.1
Q ss_pred hccccccCChhHHHHhhhhhccc-cchHHHHHHHHHHH
Q psy18023 38 EINLESSNGIEEQEMEKECKVDF-NKLDQIKKELDQII 74 (151)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~-~~LDQIsKnLdQIS 74 (151)
+.+.--.+|-+-|.+--+-.-|| +++++++.+|+.++
T Consensus 41 DwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s 78 (491)
T 1m1j_A 41 DWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQ 78 (491)
T ss_dssp STTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444455655554432222222 34445555554443
No 185
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=23.25 E-value=2e+02 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 77 LDQIIKELDLIIKESNQVIKEL 98 (151)
Q Consensus 77 LdQIsK~LdqISK~l~QiSk~L 98 (151)
++++.+++.++.+++..+...+
T Consensus 212 ~~~l~~~l~~l~~~~~~~~~~l 233 (340)
T 1v9d_A 212 AENLQKSLDQMKKQIADVERDV 233 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444
No 186
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=23.25 E-value=2.2e+02 Score=20.77 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 108 NKLDQIKKELDQMVKELDLTIKELNQII 135 (151)
Q Consensus 108 k~LdqIsK~Ldqisk~ld~isK~L~qIs 135 (151)
..|-+++++|-.+.+.+.....-|+.+.
T Consensus 212 ~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 239 (266)
T 2hn1_A 212 GKIHSLKREILAFRNAVWPLRDVLSFFT 239 (266)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555555444
No 187
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.24 E-value=1.9e+02 Score=24.21 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18023 85 DLIIKESNQVIKELNLII 102 (151)
Q Consensus 85 dqISK~l~QiSk~L~qIS 102 (151)
+++.+++.++.+++..+.
T Consensus 284 ~~l~~dl~~L~~~l~~v~ 301 (457)
T 3obv_E 284 ENLQKSLDQMKKQIADVE 301 (457)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 188
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=23.13 E-value=2.3e+02 Score=20.97 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18023 114 KKELDQMVKELDLTIK 129 (151)
Q Consensus 114 sK~Ldqisk~ld~isK 129 (151)
.++++++-+.-|..++
T Consensus 67 e~E~ae~k~KYD~~lq 82 (115)
T 3vem_A 67 ERKMAEVQAEFRRKFH 82 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 189
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=22.90 E-value=1.7e+02 Score=23.61 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 92 NQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELN 132 (151)
Q Consensus 92 ~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~ 132 (151)
.+|.-+|+++...+.+..+...-+.|..|++.+.++..+++
T Consensus 62 Klil~El~~a~~~l~~~~~~~a~~~L~Rv~~i~~~L~~~~~ 102 (281)
T 2nox_A 62 KLMLHELRAARDGVKSDQLQPAFKMLARVSRIMDQLVQAWN 102 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555666666666666666666555544
No 190
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=22.45 E-value=2.1e+02 Score=20.33 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy18023 79 QIIKELDLI 87 (151)
Q Consensus 79 QIsK~LdqI 87 (151)
||.+..+||
T Consensus 44 qI~~qGeqI 52 (85)
T 2ba2_A 44 NIDAQGEQI 52 (85)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
No 191
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.11 E-value=3.5e+02 Score=22.66 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023 87 IIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 87 ISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~ 149 (151)
+...++++-..-+.+||+..+.+-. ....+++..++..+.+.+..+-..+.++..+|+.++
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKK--GEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS--CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555441110 112334445555555555566666666666665543
No 192
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.02 E-value=7.5e+02 Score=26.48 Aligned_cols=102 Identities=14% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------hh
Q psy18023 50 QEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQN-------------------KL 110 (151)
Q Consensus 50 ~~~~~~~~~~~~~LDQIsKnLdQISK~LdQIsK~LdqISK~l~QiSk~L~qISKel~qk-------------------~L 110 (151)
.+|.++...--..|.+-++.-++.-+.+..=.+.-+.-.+...+..+.+....++.... .|
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l 2016 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEV 2016 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy18023 111 DQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151 (151)
Q Consensus 111 dqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~~~ 151 (151)
.+..++|+.--+.|+.+-..|+.+-..|++...++++.+.|
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 193
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=21.58 E-value=3.2e+02 Score=21.94 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy18023 113 IKKELDQMVKELDLTIKELNQIIKELN-QIIKEL 145 (151)
Q Consensus 113 IsK~Ldqisk~ld~isK~L~qIsk~l~-qI~K~l 145 (151)
.....+.+..++..+++.=..+...|. +|.+.|
T Consensus 120 l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL 153 (287)
T 3g9g_A 120 LRNVWDTVIEELKSDLKSSTEYYNTLDQQVVREL 153 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444444443 444433
No 194
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=21.23 E-value=4.3e+02 Score=23.35 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18023 105 SNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149 (151)
Q Consensus 105 l~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~~ 149 (151)
|+.-..+.+.++++++.++++...+-|+.-.+-.+-|+++|..+.
T Consensus 451 LT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~ 495 (514)
T 2inr_A 451 LTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIK 495 (514)
T ss_dssp GSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777776665555555666666554
No 195
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.20 E-value=4e+02 Score=23.02 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18023 86 LIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148 (151)
Q Consensus 86 qISK~l~QiSk~L~qISKel~qk~LdqIsK~Ldqisk~ld~isK~L~qIsk~l~qI~K~l~q~ 148 (151)
.+...++++-..-+.+||+..+.+-. ....+.+..++..+.+.+..+-..+.++..+|+.+
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~--~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKA--KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555441110 01123344444555555555555555555555544
No 196
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.64 E-value=2.4e+02 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18023 64 DQIKKELDQIIKELDQIIKELDLII 88 (151)
Q Consensus 64 DQIsKnLdQISK~LdQIsK~LdqIS 88 (151)
+..+..+.+.-..+..+.+.+..+.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444444444554444444
No 197
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=20.26 E-value=2.7e+02 Score=20.66 Aligned_cols=22 Identities=23% Similarity=-0.007 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy18023 81 IKELDLIIKESNQVIKELNLII 102 (151)
Q Consensus 81 sK~LdqISK~l~QiSk~L~qIS 102 (151)
.++|-.+...+.....-+..+.
T Consensus 203 rr~l~~lrr~l~p~~~vl~~L~ 224 (280)
T 4egw_A 203 RKTLVYFHKSLIANRDVLVLLK 224 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444334444443
Done!