RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18023
(151 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 43.6 bits (103), Expect = 7e-06
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 35 EESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQV 94
E NLE + E +++ + + ++ K + L + I +L + ++
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVE-RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 95 IKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
K + + D+ K E +Q+V EL L +ELN+ I + + + E
Sbjct: 1007 KKTI--------EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
Score = 37.4 bits (87), Expect = 8e-04
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 5/106 (4%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107
E K+ L+ +L + I E ++ K L + ++ +
Sbjct: 914 RSVERYKKLH---IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 108 N--KLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
++ K V L I +L + + + K + + ++
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 33.2 bits (76), Expect = 0.023
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107
E + + E K D+ K E +Q++ EL + L +E N+ I + I E+ +
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058
Query: 108 NKLDQIKKELDQMVKEL 124
KL + K+L+ + +
Sbjct: 1059 KKLVEETKQLELDLNDE 1075
Score = 32.8 bits (75), Expect = 0.031
Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 34 TEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQ 93
++L+ +E+ + + I++ D+ E +Q++ EL
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQT----EKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Query: 94 VIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQ 133
+ELN I + + + ++K+L + K+L+L + +
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 96 KELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+ L I+ + + ++ L+ + +L I E N+ K L + + L
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 42.9 bits (101), Expect = 1e-05
Identities = 24/106 (22%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELN--LIIKES 105
EE+E ++ + + K+ Q +L++ ++E + ++L L ++ IK++ ++I E
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 106 NQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
NKL + +K L++ V +L + E + K L ++ + ++ E
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Score = 33.7 bits (77), Expect = 0.019
Identities = 18/110 (16%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN- 106
+E++ +E + KL+ +L + I EL I EL + + + ++ +++
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Query: 107 -----QNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
K+ +++ + + ++L+ N+ K+ + +EL + E
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 32.9 bits (75), Expect = 0.032
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 50 QEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESN--Q 107
+++E E ++ +++ ++ ++ +L + +EL + + N +K+ +
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122
Query: 108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+ + ++++L+ + K+ + +EL + EL ++
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Score = 32.5 bits (74), Expect = 0.050
Identities = 19/104 (18%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQ 107
E Q ++E + + + + EL ++ ++ Q+ +E +L+ ++ + E +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE--LYAEAEEMR 915
Query: 108 NKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+L K+EL++++ E++ I+E + ++L K++ Q + +
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Score = 26.0 bits (57), Expect = 6.0
Identities = 11/102 (10%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 48 EEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNL--IIKES 105
+ E++ + +L L+ + + +K++ + + + ++L +
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 106 NQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ 147
+ + + +EL+ + EL+ T+ + K+ +
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 36.1 bits (83), Expect = 0.002
Identities = 17/125 (13%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 31 DGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE 90
+ ++ + + + + E ++ K +++ + + + E ++ K ++I+E+ +I+
Sbjct: 861 KEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLIRS 920
Query: 91 SNQVIKELNLIIKESNQNKLDQIKKELDQMVK----ELDLTIKELNQIIKELNQIIKELN 146
S + L++ Q LD + + + +E +IKE N
Sbjct: 921 SLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAK 980
Query: 147 QIVEE 151
+ +
Sbjct: 981 RYIRT 985
Score = 30.3 bits (68), Expect = 0.26
Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 2/140 (1%)
Query: 13 RRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQ 72
++ + LF + + E + + + + ++ K + D+ EL
Sbjct: 775 KKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQT 834
Query: 73 IIKELDQIIKELDLIIKE-SNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKEL 131
I D+ I++ + + +E KE + D + E+D ++K ++ + +
Sbjct: 835 IRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVD-LLKSQEINLDYI 893
Query: 132 NQIIKELNQIIKELNQIVEE 151
+I E N+ K +++EE
Sbjct: 894 LGLIFEHNRQNKGKGEMIEE 913
Score = 28.0 bits (62), Expect = 1.7
Identities = 16/118 (13%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 41 LESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKES---NQVIKE 97
+ +E E +++ D++ + L LD I+ + +++ ++I+E
Sbjct: 854 RDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEE 913
Query: 98 LNLIIKESNQN--KLDQIKKELDQMVKELDLTIKELNQIIKEL--NQIIKELNQIVEE 151
+ +I+ S N K + + Q + + + +E +++E
Sbjct: 914 VKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKE 971
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 35.7 bits (82), Expect = 0.003
Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 50 QEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIK------ 103
+E+E E + + +L K ++ KEL+++ ++ + K+ +++ K
Sbjct: 100 KELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYN 159
Query: 104 ESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVE 150
+ + Q+++ + KE+ ++KE I L +E
Sbjct: 160 KILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIE 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 34 TEESEINLESSNGIE--EQEMEK--ECK--VDFNKLDQIKKELDQIIKE---LDQIIKEL 84
E E + + + E +CK D K K+E+D II + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 85 DLIIKESNQVIKELNLIIKESNQNKL-DQIKKELDQMVKELDLTIKELNQIIKELNQIIK 143
++ + +++++ + N L IK E Q + I++ +++ + NQ+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFA 127
Query: 144 ELN 146
+ N
Sbjct: 128 KYN 130
Score = 30.6 bits (68), Expect = 0.19
Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 34/140 (24%)
Query: 10 LRLRRHYFAL-----------FRMFDG-----LT----PVTD--GSTEESEINLE-SSNG 46
L+ + + L + F+ LT VTD + + I+L+ S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 47 IEEQEMEKECKVDFNKLDQIKKELDQIIKEL-DQIIKELDLIIKESNQVIKELNLIIKES 105
+ E+ + K LD ++L +++ + + I++
Sbjct: 298 LTPDEV----------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 106 NQNKLDQIKKELDQMVKELD 125
D++ ++ + L+
Sbjct: 348 KHVNCDKLTTIIESSLNVLE 367
Score = 28.7 bits (63), Expect = 1.0
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 54 KECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNK---- 109
K C L+ ++K L QI I + + EL ++K
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 110 LDQIKKELDQMVKELDLTIKEL 131
L ++ + +L+ K L
Sbjct: 250 LLNVQNA--KAWNAFNLSCKIL 269
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 33.2 bits (76), Expect = 0.024
Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 99 NLIIKESN--QNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
NL + + L++++ ++DQ+ +L I + +++E+ +I +
Sbjct: 17 NLYFQSNAMVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLR 69
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 68 KELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIK 114
L+++ ++DQ+ +L +I + +++E+ I + D ++
Sbjct: 28 TNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLR 74
Score = 27.4 bits (61), Expect = 1.9
Identities = 6/42 (14%), Positives = 23/42 (54%)
Query: 61 NKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLII 102
L++++ ++DQ+ +L ++I + +++E ++ +
Sbjct: 28 TNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLR 69
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 32.1 bits (72), Expect = 0.052
Identities = 14/115 (12%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 45 NGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE 104
+ + ++ ++ + + +L I ++ + +K+L Q + + +ES ++ + + +
Sbjct: 8 DAMSQKHLQINQRFE--ELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQL 65
Query: 105 SNQNKLD----------QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
+ Q ++ ++ L + + L EL + ++ Q++++ I+
Sbjct: 66 NPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTII 120
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 31.2 bits (71), Expect = 0.12
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 35 EESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE 90
I S+ ++ ++ + +D + L + + + EL Q + ELD +++E
Sbjct: 453 SREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRE 508
Score = 28.9 bits (65), Expect = 0.67
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 47 IEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE-S 105
E K +D + L + E D + E + E Q + EL+ +++E
Sbjct: 454 REWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE---AMGELVQALSELDALMRELG 510
Query: 106 NQNKLDQIKKELDQMVKE 123
++ D ++ L++
Sbjct: 511 ASDEADLQRQLLEEAFGG 528
Score = 25.4 bits (56), Expect = 9.4
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 102 IKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+K+ + D + E D + E + EL Q + EL+ +++EL E
Sbjct: 470 LKDKDSIDADSLP-EPDVLAAEA---MGELVQALSELDALMRELGASDEA 515
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.0 bits (70), Expect = 0.13
Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 27/160 (16%)
Query: 11 RLRRHYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKEL 70
R R + TP + L + + +E + + KL + ++
Sbjct: 1885 RQGRQNYV--------TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV 1936
Query: 71 DQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKE-----------LDQ 119
+ L Q +ELD+ +++NQ +K++ + + + D + + + +
Sbjct: 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK 1996
Query: 120 MVKELDLTI--------KELNQIIKELNQIIKELNQIVEE 151
+ DL +E+ Q+ N++ + ++IV
Sbjct: 1997 VKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVAT 2036
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 30.7 bits (70), Expect = 0.17
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 70 LDQIIKELD----QIIKELDLIIKESNQVIKELNLIIKE-SNQNKLDQIKKELDQMVKEL 124
+D+II ++ +LD K+ N V KE+ K + L K++L KE+
Sbjct: 32 VDEII-AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEI 90
Query: 125 DLTIKELNQIIKELNQIIKELNQIVEE 151
++ + K L I ++ IV E
Sbjct: 91 I---EKEAEADKNLRSKINQVGNIVHE 114
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein,
RNA protein, DNA binding protein; 2.20A {Homo sapiens}
SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Length = 240
Score = 30.0 bits (67), Expect = 0.24
Identities = 5/76 (6%), Positives = 26/76 (34%)
Query: 64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKE 123
+++ L ++I K + + + + +++ L + + + + + + +
Sbjct: 20 VELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGT 79
Query: 124 LDLTIKELNQIIKELN 139
+ + L
Sbjct: 80 VKTHLTSLKTKFPAEQ 95
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 30.3 bits (69), Expect = 0.24
Identities = 24/119 (20%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 32 GSTEESEINLESSNGIEEQEMEKECKVDFNKLD-QIKKELDQIIKELDQIIKELDLIIKE 90
S +E +I +++S+G+ E E++K + D + E D+ EL Q + D ++
Sbjct: 492 NSGKEQKITIKASSGLNEDEIQKMVR------DAEANAEADRKFDELVQTRNQGDHLLHS 545
Query: 91 SNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
+ + ++E + ++ ++ L+ +K D + ++EL Q+ ++L +I
Sbjct: 546 TRKQVEEAGDKLPADDKTAIESALTALETALKGED--KAAIEAKMQELAQVSQKLMEIA 602
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 29.0 bits (65), Expect = 0.27
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
I K+ ++ I +L I+EL+ + ++ +VE
Sbjct: 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVES 46
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 29.7 bits (67), Expect = 0.32
Identities = 9/80 (11%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 74 IKELDQII--KELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKEL 131
+ LD I K + ++E +K++ +++++ + +++ + L
Sbjct: 50 LIHLDLIKSLKYIGTPLEE-----------MKKAQDLEMEELFAFYTEQERQIREKLDFL 98
Query: 132 NQIIKELNQIIKELNQIVEE 151
+ + + ++ + K + + +E
Sbjct: 99 SALEQTISLVKKRMKRQMEY 118
Score = 25.5 bits (56), Expect = 9.0
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 63 LDQIKK-----------ELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNK-- 109
L+++KK + +++ + + L + + + V K + ++ +
Sbjct: 66 LEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVF 125
Query: 110 -LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148
LD+ + + Q E LN +L + I+ +
Sbjct: 126 VLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGF 165
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.7 bits (67), Expect = 0.36
Identities = 9/96 (9%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 62 KLDQIKKELDQIIKELDQIIKE------LDLIIKESNQVIKELNLIIKESNQNKLDQIKK 115
+ D + K + K + + +K+ + + + + +++ +++
Sbjct: 49 RADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRL 108
Query: 116 ELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+D+ + + D E ++ E + ++E+ ++
Sbjct: 109 LIDEAILKCD---AERIKLEAERFENLREIGNLLHP 141
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
protein complex, transport protein; 2.40A {Rattus
norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Length = 83
Score = 27.4 bits (61), Expect = 0.62
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
I K+ ++ I +L I+EL+ + ++ +VE
Sbjct: 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVES 46
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND
protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron}
SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Length = 527
Score = 28.6 bits (64), Expect = 0.75
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 24/70 (34%)
Query: 15 HYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQII 74
HY+ +F G P + SN + ++ E I
Sbjct: 138 HYWYFLDLF-GKAPFKE----------HFSNDLPVEKKGTEL-------------YTYIQ 173
Query: 75 KELDQIIKEL 84
EL++I ++
Sbjct: 174 NELNEIEADM 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.86
Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 55/154 (35%)
Query: 15 HYFALFRMFDGLTP-----VTDGSTEESE-----INLESSNGIEEQEMEKECKVDFNKLD 64
HY ++ G TP G+T S+ + + ++ E F
Sbjct: 248 HYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----------SFFVS- 295
Query: 65 QIKKELDQIIKELDQIIKELDLIIKESNQVIKELNL---IIKESNQNKLDQIKKELDQ-- 119
+ + I L I + +L I+++S +N ++
Sbjct: 296 ------------VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN---------NEGV 334
Query: 120 ---M--VKELDLTIKELNQIIKELNQIIKELNQI 148
M + +LT +++ + + N + Q+
Sbjct: 335 PSPMLSIS--NLTQEQVQDYVNKTNSHLPAGKQV 366
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.00A {Enterococcus faecalis}
Length = 80
Score = 27.2 bits (60), Expect = 0.91
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLD--QIKKELDQMVKELDLTIKELNQIIK 136
+I++E+ ++ + + KELNLI K D + + ++M K + LT +E ++ K
Sbjct: 8 EILEEVAVLSENARGWRKELNLISWNGRPPKFDLREWAPDHEKMGKGITLTNEEFAELSK 67
Query: 137 ELNQIIKE 144
+ +++
Sbjct: 68 TIKSMLEH 75
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
ME ++D L + E+ + I L+ + L
Sbjct: 443 HMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL 477
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.6 bits (62), Expect = 1.7
Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 62 KLDQIKKELDQIIKELDQ----IIKELDLIIKESNQVIKELNLIIK--ESNQNKLDQIKK 115
K + K+L II Q + +++ + +E V + + ++ +++Q + D +
Sbjct: 61 KGELRSKDLPGII-STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQ 119
Query: 116 ELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148
L +E+ + L + Q+ ++
Sbjct: 120 SLRARGREIRKQLTLLYP---KEAQLEEQFYLR 149
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease,
hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Length = 290
Score = 27.4 bits (60), Expect = 1.7
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVK 122
++ELD + ++++K I ES + I L+ I ++ ++ I E + +
Sbjct: 39 FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRI---TSAPDMEDILTESEIKLD 95
Query: 123 ELDLTIKELNQIIKELN 139
+ I ++ Q + +
Sbjct: 96 GVRQKIFQVAQELSGED 112
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
h.1.15.1
Length = 65
Score = 26.1 bits (58), Expect = 1.7
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 120 MVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+ E + +I++L I ++N+I K+L ++ E
Sbjct: 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHE 34
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; NMR {Streptococcus pneumoniae} PDB:
3obh_A*
Length = 82
Score = 26.0 bits (57), Expect = 1.9
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLD--QIKKELDQMVKELDLTIKELNQIIK 136
+I + L + + KE+N + K D + +M K + L+ +E ++
Sbjct: 10 EIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVD 69
Query: 137 ELNQIIKE 144
++
Sbjct: 70 AFKGNLEH 77
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 27.1 bits (59), Expect = 2.2
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQ----- 133
Q IK++ IKE + + + N+ L+ KKE + K T+K +
Sbjct: 122 QTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAI 181
Query: 134 -IIKELNQIIKELNQIVE 150
+ N++I + N I++
Sbjct: 182 NVFVSANRLIHQTNLILQ 199
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Lactococcus lactis subsp}
Length = 80
Score = 26.0 bits (57), Expect = 2.3
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLD--QIKKELDQMVKELDLTIKELNQIIK 136
+II+EL ++ + + KELN + + K D + ++M K + L+ +E ++K
Sbjct: 8 EIIEELIVLSENAKGWRKELNRVSWNDAEPKYDIRTWSPDHEKMGKGITLSEEEFGVLLK 67
Query: 137 ELNQIIK 143
EL ++
Sbjct: 68 ELGNKLE 74
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA
complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus}
PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A*
3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3t3f_A* 4df4_A*
4df8_A* 4dfj_A* 3rrh_A* 4dfm_A* 4dfp_A* 1ktq_A* 5ktq_A*
...
Length = 540
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
ME ++D L + E+ + I L+ + L
Sbjct: 151 HMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL 185
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Length = 68
Score = 25.3 bits (56), Expect = 2.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 119 QMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
++ I +L I+EL+ + ++ +VE
Sbjct: 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVES 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
snare complex, early endosomal snare complex, VTI1A,
VAMP4, transport protein; 2.50A {Rattus norvegicus}
Length = 71
Score = 25.3 bits (56), Expect = 2.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 128 IKELNQIIKELNQIIKELNQIVEE 151
I++L I ++NQI K+L ++ +
Sbjct: 8 IQQLEADILDVNQIFKDLAMMIHD 31
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 27.1 bits (61), Expect = 2.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
EME KVD +L+Q+ KEL + + ++Q I EL
Sbjct: 203 EMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYEL 237
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein,
glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A
{Influenza a virus} PDB: 2wrh_I*
Length = 222
Score = 26.9 bits (59), Expect = 3.0
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
++S QN +D I +++ ++++++ + + L + I+ LN+ V++
Sbjct: 38 QKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDD 86
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 26.6 bits (58), Expect = 3.4
Identities = 11/82 (13%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 58 VDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKEL 117
V+ + +K +D + + I + I S + +L +I S+ +++
Sbjct: 19 VNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIH--SDLSQISAACGLA 76
Query: 118 DQMVKELDLTIKELNQIIKELN 139
+ V+ ++L +++
Sbjct: 77 RKQVELCAQKYQKLAELVPAGQ 98
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 27.0 bits (59), Expect = 3.4
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQI---IKELNQIVEE 151
KES Q D I +++ ++ + + + KE + + ++ LN+ +E+
Sbjct: 378 KESTQKAFDGITNKVNSVI---EKMNTQFEAVGKEFSNLERRLENLNKKMED 426
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 25.3 bits (56), Expect = 4.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 119 QMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
++ I +L I+EL+ + ++ +VE
Sbjct: 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVES 35
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 120 MVKELDLTIKEL-NQIIKELNQIIKELNQIVEE 151
++ E+ +K++ I+KE + +++L +EE
Sbjct: 295 LIDEI-KPVKQIIEDILKEFKETVEKLRGYIEE 326
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 26.2 bits (58), Expect = 4.4
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 20/70 (28%)
Query: 15 HYFALFRMFDGLTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQII 74
YF + + + G+ + T E + S+ EKEC D I+
Sbjct: 118 FYFEMVKRYGGVILLDKVLTMEDNWEIPRSS-------EKEC-------------YDFIL 157
Query: 75 KELDQIIKEL 84
++L + + L
Sbjct: 158 EDLKKATEML 167
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium (NESG); HET: DT; 2.90A {Streptococcus
pneumoniae}
Length = 79
Score = 24.9 bits (54), Expect = 5.2
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 79 QIIKELDLIIKESNQVIKELNLIIKESNQNKLD--QIKKELDQMVKELDLTIKELNQIIK 136
+I + L + + KE+N + K D + +M K + L+ +E ++
Sbjct: 15 EIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVD 74
Query: 137 ELN 139
Sbjct: 75 AFK 77
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 26.1 bits (58), Expect = 5.2
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 95 IKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ 147
+ E+ I ++N ++ L M+ +L T E ++ +K + K L
Sbjct: 486 LTEIVAKINQTNA-TIESQTASLLDMLGQLHGTTPEADEELKAFVKAFKGLEH 537
Score = 26.1 bits (58), Expect = 5.4
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 53 EKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQ 112
E+E +I +++Q ++ L ++ + + E +L
Sbjct: 479 EEEEVEPL---TEIVAKINQTNATIESQTASLLDMLGQLHGTTPEA--------DEELKA 527
Query: 113 IKKELDQMVKELD 125
K +
Sbjct: 528 FVKAFKGLEHHHH 540
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 5.3
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 41 LESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNL 100
LE + K + + + L ++ K+ +++ + +KE +KE
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA-- 360
Query: 101 IIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQI 148
++ K D++KK K+L+ K L+ + Q +
Sbjct: 361 --EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELL 406
>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
precursor, virus/viral protein protein; HET: NAG BMA
MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
Length = 494
Score = 26.2 bits (57), Expect = 5.4
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQI---IKELNQIVEE 151
+S Q +DQI +L++++ + T ++ +QI KE +++ I++L + VE+
Sbjct: 359 LKSTQAAIDQINGKLNRVI---EKTNEKFHQIEKEFSEVEGRIQDLEKYVED 407
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO
bundle, rudimentary enzymatic activitie; 2.20A
{Synthetic construct}
Length = 102
Score = 25.2 bits (55), Expect = 5.6
Identities = 10/68 (14%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 92 NQVIKELNLIIKESNQN------KLDQIKKELDQMVKELDLTIK------ELNQIIKELN 139
N++++ + ++++ N+N L + ++++Q+ +E ++ +L +I E+
Sbjct: 6 NKLVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGNQDDGKLQNMIHEMQ 65
Query: 140 QIIKELNQ 147
Q + +++
Sbjct: 66 QFMNQVDN 73
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein;
NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Length = 102
Score = 25.2 bits (55), Expect = 6.1
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 92 NQVIKELNLIIKESNQN------KLDQIKKELDQMVKELDLTIK------ELNQIIKELN 139
N ++++L ++K ++N L + L +++++ ++ +L +++KE
Sbjct: 6 NDLLEDLQEVLKNLHKNWHGGKDNLHDVDNHLQNVIEDIHDFMQGGGSGGKLQEMMKEFQ 65
Query: 140 QIIKELNQ 147
Q++ ELN
Sbjct: 66 QVLDELNN 73
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 26.0 bits (58), Expect = 6.4
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
+E+ K+D L +EL + EL++ E+
Sbjct: 216 RIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 250
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 26.0 bits (58), Expect = 6.6
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 102 IKESNQNKLDQIKKELDQ-MVKELDLTIKELNQIIKELNQIIKELN 146
I +N+ L++ + L ++K L L+ +LN + L QI
Sbjct: 71 ILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQ 116
>1gp2_G G protein GI gamma 2; signal transduction protein, GTPase, WD40,
RAS-like, complex (GTP-binding/transducer); HET: GDP;
2.30A {Bos taurus} SCOP: a.137.3.1 PDB: 1gg2_G* 2bcj_G*
3ah8_G* 1xhm_B 2qns_B 3kj5_B 3pvu_G* 3cik_G 3krw_G*
3krx_G* 3psc_G 1omw_G* 3pvw_G* 3sn6_G*
Length = 71
Score = 24.4 bits (53), Expect = 7.4
Identities = 6/40 (15%), Positives = 20/40 (50%)
Query: 105 SNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKE 144
+N + Q +K ++Q+ E ++ ++++ +L +
Sbjct: 4 NNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEA 43
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 25.7 bits (57), Expect = 7.6
Identities = 5/32 (15%), Positives = 20/32 (62%)
Query: 67 KKELDQIIKELDQIIKELDLIIKESNQVIKEL 98
+L+ I K+++ I + + ++ + +++K++
Sbjct: 194 LDKLESIGKQIESISMQGEKVLVNNVELMKKI 225
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 25.7 bits (57), Expect = 7.8
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 104 ESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL-NQIVE 150
+ L + L + +K+ +L +KELN+I+ + + + L N++ E
Sbjct: 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
{Saccharomyces cerevisiae} SCOP: h.1.15.1
Length = 69
Score = 24.2 bits (53), Expect = 8.1
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 119 QMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
V+ + +L + + EL Q+ ++ ++V E
Sbjct: 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIE 35
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 25.3 bits (56), Expect = 8.7
Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 95 IKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL-NQIVE 150
+ ++ + + L Q +EL + ++ ++ + + + N KEL N +++
Sbjct: 1 MGSMHAALSTEVVH-LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein;
2.30A {Bacillus subtilis subsp}
Length = 350
Score = 25.4 bits (55), Expect = 8.7
Identities = 14/104 (13%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 26 LTPVTDGSTEESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELD 85
+ PV + I++++ + E + E + L +++ ++ ++ + + +D
Sbjct: 236 IKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLER--DVKQVMD 293
Query: 86 LIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIK 129
+ E L+ I+ + + +++K D++ E D
Sbjct: 294 KLQHEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYD 337
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Length = 176
Score = 25.0 bits (54), Expect = 8.8
Identities = 7/49 (14%), Positives = 25/49 (51%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+S Q +D+I +++ +V +++ ++ E+ + +N +++
Sbjct: 38 SDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDD 86
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST
cell membrane, HOST membrane, membrane, transmembrane,
viral protein; HET: NAG; 2.60A {Influenza a virus} PDB:
3m5h_B* 3m5i_B* 3m5j_B*
Length = 182
Score = 25.4 bits (55), Expect = 8.8
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+S Q+ +DQI +L++++ + + + ++ E+ Q I + +
Sbjct: 38 YKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRD 86
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional
regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB:
1q09_A 1q0a_A
Length = 99
Score = 24.6 bits (53), Expect = 9.0
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 82 KELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQI 141
++L ++ I+EL I + + + K + + ++E++ I EL + + L ++
Sbjct: 13 RQLGFSLES----IRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68
Query: 142 IKE 144
Sbjct: 69 NDA 71
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 25.3 bits (56), Expect = 9.0
Identities = 24/119 (20%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 32 GSTEESEINLESSNGIEEQEMEKECKVDFNKLD-QIKKELDQIIKELDQIIKELDLIIKE 90
S +E +I +++S+G+ E E++K + D + E D+ +EL Q + D ++
Sbjct: 104 NSGKEQKITIKASSGLNEDEIQKMVR------DAEANAEADRKFEELVQTRNQGDHLLHS 157
Query: 91 SNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIV 149
+ + ++E + ++ ++ L+ +K D + ++EL Q+ ++L +I
Sbjct: 158 TRKQVEEAGDKLPADDKTAIESALTALETALKGED--KAAIEAKMQELAQVSQKLMEIA 214
>2viu_B Hemagglutinin; envelope protein, glycoprotein; HET: NAG BMA; 2.50A
{Unidentified influenza virus} SCOP: h.3.1.1 PDB:
1eo8_B* 1hgd_B* 1hgf_B* 1hgg_B* 1hgh_B* 1hgi_B* 1hgj_B*
1ken_B* 1qfu_B* 2hmg_B* 1hge_B* 3hmg_B* 3ztj_B* 4hmg_B*
5hmg_B* 3sdy_B* 3eym_B* 3eyk_B* 3eyj_B* 1ti8_B* ...
Length = 175
Score = 25.0 bits (54), Expect = 9.6
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 103 KESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+S Q +DQI +L++++++ + ++ + E+ I++L + VE+
Sbjct: 38 LKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVED 86
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
INIT midwest center for structural genomics, MCSG,
unknown funct; 1.90A {Streptococcus pneumoniae} SCOP:
d.58.18.7
Length = 91
Score = 24.2 bits (53), Expect = 9.8
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 73 IIKELDQIIKELDLIIKESNQVIKE----LNLIIKESNQNKLDQIKKELDQMVKELDLTI 128
I+ + I EL L I + +Q + + + ++ + ++ E + + L++ I
Sbjct: 18 IVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKI 77
Query: 129 K 129
Sbjct: 78 N 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.353
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,262,313
Number of extensions: 137075
Number of successful extensions: 1437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 415
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)