RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18023
(151 letters)
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
9606]}
Length = 217
Score = 31.0 bits (70), Expect = 0.041
Identities = 5/76 (6%), Positives = 26/76 (34%)
Query: 64 DQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKE 123
+++ L ++I K + + + + +++ L + + + + + + +
Sbjct: 8 VELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGT 67
Query: 124 LDLTIKELNQIIKELN 139
+ + L
Sbjct: 68 VKTHLTSLKTKFPAEQ 83
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 27.8 bits (60), Expect = 0.55
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 61 NKLDQIKKELDQIIKELDQIIKEL-DLIIKESNQVIKELNLI 101
++LDQ+++E +Q+ ++ K D + + I + I
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRI 43
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 27.4 bits (60), Expect = 0.75
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 67 KKELDQIIKELDQIIKELD 85
K++LD+ + + + +K D
Sbjct: 386 KEQLDECTEIIVKTVKFFD 404
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.9 bits (59), Expect = 1.0
Identities = 12/93 (12%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 63 LDQIKKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKE----SNQNKLDQIKKELD 118
++ + + + + D + LD K+ ++E+N +++ + + + KE
Sbjct: 1 INPVNNRIQDLTERSDVLRGYLDYDAKKER--LEEVNAELEQPDVWNEPERAQALGKERS 58
Query: 119 QMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+ +D T+ ++ Q +++++ +++ + +E
Sbjct: 59 SLEAVVD-TLDQMKQGLEDVSGLLELAVEADDE 90
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 86
Score = 25.6 bits (56), Expect = 1.4
Identities = 8/60 (13%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 73 IIKELDQIIKELDLIIKESNQVI---KELNLIIKESNQNKLDQIKKELDQMVKELDLTIK 129
I E+ +++ + I +S + + L++ + + + +++ L + ++ DL
Sbjct: 18 ICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITM 77
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
{Bacillus stearothermophilus, newly identified strain
as yet unnamed [TaxId: 1422]}
Length = 408
Score = 26.4 bits (57), Expect = 1.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
EME KVD +L+Q+ KEL + + ++Q I EL
Sbjct: 19 EMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYEL 53
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 26.3 bits (57), Expect = 1.6
Identities = 6/57 (10%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 67 KKELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELDQMVKE 123
K+ +++K+ + EL+ ++K + ++ + L + + ++
Sbjct: 708 KERYQKLLKQKQEKETELENLLK-----LSAKDIWNTD-----LKAFEVGYQEFLQR 754
Score = 25.9 bits (56), Expect = 2.3
Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 111 DQIKKELDQMVKELD--LTIKELNQIIKELNQIIKELNQIVEE 151
++ K+ + EL+ L + + +L + ++
Sbjct: 712 QKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 754
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 26.1 bits (56), Expect = 2.0
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 35 EESEINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQIIKELDLIIKE 90
I S+ ++ ++ + +D + L + + + EL Q + ELD +++E
Sbjct: 448 SREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRE 503
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 83
Score = 24.7 bits (54), Expect = 2.4
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 73 IIKELDQIIKELDLIIKESNQVIKE----LNLIIKESNQNKLDQIKKELDQMVKELDLTI 128
I+ + I EL L I + +Q + + + ++ + ++ E + + L++ I
Sbjct: 15 IVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKI 74
Query: 129 K 129
Sbjct: 75 N 75
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
{Thermus aquaticus [TaxId: 271]}
Length = 409
Score = 25.7 bits (55), Expect = 2.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
ME ++D L + E+ + I L+ + L
Sbjct: 21 HMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRL 55
>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 25.3 bits (55), Expect = 3.1
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 57 KVDFNKLDQIKKEL--DQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIK 114
+ F+ L KK + + +D +I + L K+ E + + ++
Sbjct: 191 QYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLF 250
Query: 115 KELDQMVKELDLTIKELNQIIKELNQIIKEL 145
+ L + + Q I + E+
Sbjct: 251 QCLLHRALHPREPLPPIQQHIWNMLNPPAEV 281
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 25.5 bits (55), Expect = 3.4
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 67 KKELDQIIKELDQIIKELDLI 87
+++ + ++ +I K+L +I
Sbjct: 380 PEQITRAVEAFTRIGKQLGVI 400
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 25.6 bits (55), Expect = 3.4
Identities = 2/18 (11%), Positives = 9/18 (50%)
Query: 67 KKELDQIIKELDQIIKEL 84
++++D + ++ L
Sbjct: 410 EEDIDATLAAARTVMSAL 427
>g1m93.1 e.1.1.1 (A:,B:,C:) Viral serpin crmA (cytokine response
modifier protein) {Cowpox virus [TaxId: 10243]}
Length = 322
Score = 25.5 bits (55), Expect = 3.4
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 117 LDQMVKELDLTIKELNQIIKELNQIIKE 144
+Q+ K +D++ K +N++ + + K+
Sbjct: 39 AEQLSKYVDISFKSMNKVYGRYSAVFKD 66
Score = 24.3 bits (52), Expect = 6.5
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 77 LDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKELD 118
+Q+ K +D+ K N+V + + K+S K+ + +D
Sbjct: 39 AEQLSKYVDISFKSMNKVYGRYSAVFKDSFLRKIGDNFQTVD 80
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 25.6 bits (55), Expect = 3.5
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 67 KKELDQIIKELDQIIKELDLIIKES 91
K+ L+ + + ++K+ ++ +
Sbjct: 423 KETLEAFAEAMGALLKKPKEWLENA 447
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
{Escherichia coli [TaxId: 562]}
Length = 410
Score = 25.2 bits (54), Expect = 3.7
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 51 EMEKE-CKVDFNKLDQIKKELDQIIKELDQIIKEL 84
+E+ K+D L +EL + EL++ E+
Sbjct: 21 RIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 55
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 25.3 bits (55), Expect = 3.8
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 112 QIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQ 147
Q+K+ L + ++ L+ I I +L
Sbjct: 18 QMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKA 53
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 25.4 bits (54), Expect = 3.8
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 125 DLTIKELNQIIKELNQIIK 143
++ ++ +I K + + IK
Sbjct: 356 AMSKDDVYEISKLILKSIK 374
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein
Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.9 bits (52), Expect = 5.1
Identities = 8/68 (11%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 61 NKLDQIKK----ELDQIIKELDQIIKELDLIIKESNQVIKELNLIIKESNQNKLDQIKKE 116
+K+ ++ + E Q++ +++ ++E ++++ + ++E+ + N++ K+E
Sbjct: 16 SKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE 75
Query: 117 LDQMVKEL 124
+ ++ +
Sbjct: 76 MGKLETDF 83
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 88
Score = 24.0 bits (52), Expect = 5.1
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 55 ECKVDFNKLDQIKKELDQIIKELDQIIKELDLII 88
++ ++L ++ L I E I+
Sbjct: 37 MGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFIL 70
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 24.9 bits (53), Expect = 5.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 67 KKELDQIIKELDQIIKEL 84
+++D IK LD+ + +
Sbjct: 422 MQDVDLFIKRLDKCLNIV 439
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer
protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Length = 142
Score = 24.5 bits (53), Expect = 5.4
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 107 QNKLDQIKKELDQMVKELDLTIKELNQIIKELNQII 142
D L + + + +++ QI
Sbjct: 106 DKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQ 141
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 24.5 bits (52), Expect = 6.7
Identities = 3/19 (15%), Positives = 12/19 (63%)
Query: 67 KKELDQIIKELDQIIKELD 85
+E Q+ + L+ +++++
Sbjct: 50 AEEQAQLEEALNVLLEDVR 68
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 24.5 bits (53), Expect = 7.3
Identities = 6/41 (14%), Positives = 21/41 (51%)
Query: 111 DQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
+++ E +++ ++ ++ L + + I +EL + E+
Sbjct: 443 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 24.0 bits (51), Expect = 7.7
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 90 ESNQVIKELNLIIKESNQNKLDQIKKELDQMVKELDL 126
+ + + + + + L + L M K L+L
Sbjct: 136 GESGITDFVKVNMTAEEEGLLKKSADTLWNMQKNLEL 172
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 23.9 bits (52), Expect = 7.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 63 LDQIKKELDQIIKELDQIIKELDLIIKESN 92
+ D +IK + ++ LD +I + N
Sbjct: 58 FADLLAHSDGLIKNISDDLRALDKLIVKPN 87
Score = 23.9 bits (52), Expect = 8.1
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 114 KKE-----LDQMVKELDLTIKELNQIIKELNQIIKELN 146
KKE ++ D IK ++ ++ L+++I + N
Sbjct: 50 KKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVKPN 87
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
[TaxId: 90371]}
Length = 395
Score = 24.3 bits (51), Expect = 8.2
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
Query: 38 EINLESSNGIEEQEMEKECKVDFNKLDQIKKELDQIIKELDQI 80
E+ ++S+N Q LD I+ E+ Q + E+D++
Sbjct: 38 ELAVQSANSTNSQSD----------LDSIQAEITQRLNEIDRV 70
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 24.1 bits (51), Expect = 8.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 67 KKELDQIIKELDQIIKELD 85
K E+DQI+ LD++ +E
Sbjct: 52 KAEMDQILHGLDKVAEEWA 70
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 24.1 bits (51), Expect = 9.2
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 110 LDQIKKELDQMVKELDLTIKELNQIIKELNQIIKEL-NQIVE 150
L Q +EL + ++ ++ + + + N KEL N +++
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 42
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 23.8 bits (51), Expect = 9.6
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 98 LNLIIKESNQNKLDQIKKELDQMVKELDLTIKELNQIIKELNQIIKELNQIVEE 151
L+ +++ + ++KK D V L +++L EL E + + +
Sbjct: 18 LSKLLRLGEGRMVKRLKKVADY-VGTLSDDVEKLTD--AELRAKTDEFKRRLAD 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.136 0.353
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,644
Number of extensions: 29270
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 195
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.2 bits)