BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18025
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8JZP9|GA2L1_MOUSE GAS2-like protein 1 OS=Mus musculus GN=Gas2l1 PE=2 SV=1
Length = 678
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 1 MKVARRGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQY 60
++VARRGA+LG+ AP L+Q E+EI+RE+ A + S + D+ + + +
Sbjct: 141 LEVARRGARLGLLAPRLVQFEQEIERELRATPQ---VSSVPAAEEDVTEIATVPGVPTR- 196
Query: 61 GPLPQIVTNDLKSLDEM 77
P++ NDL++LDE+
Sbjct: 197 --TPRMTPNDLRNLDEL 211
>sp|Q99501|GA2L1_HUMAN GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1 SV=2
Length = 681
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MKVARRGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQY 60
++VARRGA+LG+ AP L+Q E+EI+RE+ A ED +
Sbjct: 141 LEVARRGARLGLLAPRLVQFEQEIERELRAAPPAPNAPAAG------EDTTETAPAPGTP 194
Query: 61 GPLPQIVTNDLKSLDEM 77
P++ +DL++LDE+
Sbjct: 195 ARGPRMTPSDLRNLDEL 211
>sp|Q117J2|Y938_TRIEI UPF0182 protein Tery_0938 OS=Trichodesmium erythraeum (strain
IMS101) GN=Tery_0938 PE=3 SV=1
Length = 1019
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 15 PMLIQLE----REIDREIAADKKKLGFSDNEYYDAD-LEDDLSDSDDEAQYGPL 63
P ++Q+ EI+REI K+ + F+ Y D D LE +L D ++E Y L
Sbjct: 433 PKIVQMAIVQPNEIEREIPYIKRSITFTKEAYIDVDKLEVELFDPNNELTYDDL 486
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 67 VTNDLKSLDEMDSNHQPPDPKSTALTTTP 95
V + SLDE QPP P+ST+ TP
Sbjct: 351 VDTAMASLDEQSREAQPPSPRSTSPCQTP 379
>sp|Q58365|HIS8_METJA Histidinol-phosphate aminotransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=hisC PE=3 SV=1
Length = 373
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 43 YDADLEDDLSDSDDEAQYGPLPQIVTNDLKSLDEMDSNHQPPDP 86
Y ED + +E +GP P+I K LDE+D HQ P+P
Sbjct: 33 YGIKPEDIIKLGSNENPWGPSPKIKE---KILDEIDKIHQYPEP 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,587,403
Number of Sequences: 539616
Number of extensions: 1659376
Number of successful extensions: 5163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 5107
Number of HSP's gapped (non-prelim): 99
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)