Query psy18025
Match_columns 99
No_of_seqs 76 out of 78
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:34:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v5r_A Growth-arrest-specific 89.3 0.17 5.8E-06 34.9 1.9 24 68-91 4-29 (97)
2 1mke_A WIP - N-WAsp, fusion pr 33.8 9.8 0.00033 27.3 0.3 40 56-98 4-50 (152)
3 2c0s_A Conserved domain protei 21.8 38 0.0013 21.0 1.4 26 3-28 17-42 (64)
4 2bzb_A Conserved domain protei 18.2 25 0.00085 21.7 -0.1 29 3-31 17-45 (62)
5 2ifs_A N-WAsp, wiskott-aldrich 17.7 16 0.00054 26.6 -1.2 20 76-98 47-67 (169)
6 2hmh_A Suppressor of cytokine 15.1 55 0.0019 22.4 1.1 17 69-85 105-121 (152)
7 1use_A VAsp, vasodilator-stimu 15.0 97 0.0033 18.4 2.0 18 16-33 8-25 (45)
8 3g17_A Similar to 2-dehydropan 14.2 70 0.0024 23.1 1.5 23 3-25 259-281 (294)
9 3i83_A 2-dehydropantoate 2-red 13.0 1.1E+02 0.0038 22.3 2.3 23 3-25 277-299 (320)
10 3hn2_A 2-dehydropantoate 2-red 13.0 78 0.0027 23.1 1.5 23 3-25 278-300 (312)
No 1
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=89.34 E-value=0.17 Score=34.88 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.2
Q ss_pred CCccCchHHHHhhhCC--CCCCCCcc
Q psy18025 68 TNDLKSLDEMDSNHQP--PDPKSTAL 91 (99)
Q Consensus 68 ~~dlrnLDELVq~LVs--~ct~~~~~ 91 (99)
-|+.++||++|++||+ +|+|....
T Consensus 4 ~~~~~~LD~~V~~iv~~~~c~c~~~~ 29 (97)
T 1v5r_A 4 GSSGNLLDDAVKRISEDPPCKCPTKF 29 (97)
T ss_dssp CCCCCHHHHHHHHHHTSSCCCSSSCC
T ss_pred cCCCchHHHHHHHHhcCCCccccCCC
Confidence 3788999999999998 59987654
No 2
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=33.78 E-value=9.8 Score=27.32 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=23.6
Q ss_pred CcccCCCCCcccCCccCchH------HHHhhhCC-CCCCCCccccccccc
Q psy18025 56 DEAQYGPLPQIVTNDLKSLD------EMDSNHQP-PDPKSTALTTTPLRL 98 (99)
Q Consensus 56 p~~~~~p~p~~~~~dlrnLD------ELVq~LVs-~ct~~~~~~~~~~~~ 98 (99)
||.||.|-.+..|+-|-.=| +.|.+||+ +|++ +.++-.||
T Consensus 4 ~~~~~~~~~~~~ps~l~~~~~~~~~~~~lf~llG~~C~~---lataVaqL 50 (152)
T 1mke_A 4 PPEPYVQTTKSYPSKLARNESRGSGSGSLFSFLGKKCVT---MSSAVVQL 50 (152)
T ss_dssp CCCCCCCCCCCCSTTTTCSSSSCCCCCCCSCSSCCCCEE---EEEEEEEE
T ss_pred CCCCcccccccCCchhhccccccchHHHHHHHhCCCCcE---EEEeeEEE
Confidence 33466666665555444444 47999999 7754 55554443
No 3
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=21.76 E-value=38 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.3
Q ss_pred hhhhhcccCCCCCchHHhHHHHHHhh
Q psy18025 3 VARRGAKLGMPAPMLIQLEREIDREI 28 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~~e~ 28 (99)
+-..|.+||+.-|..++.=||+|.=|
T Consensus 17 L~~l~~k~Gl~~~~vI~~SQeLD~LI 42 (64)
T 2c0s_A 17 LIYLVEKYGFTHHKVISFSQELDRLL 42 (64)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999655
No 4
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=18.16 E-value=25 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=23.7
Q ss_pred hhhhhcccCCCCCchHHhHHHHHHhhhhh
Q psy18025 3 VARRGAKLGMPAPMLIQLEREIDREIAAD 31 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~~e~r~e 31 (99)
+-..|.+||+.-|..++.=||+|.=|-.-
T Consensus 17 L~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y 45 (62)
T 2bzb_A 17 LIQLVARHGLDHDKVLLFSRDLDKLINKF 45 (62)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999766443
No 5
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=17.72 E-value=16 Score=26.60 Aligned_cols=20 Identities=5% Similarity=-0.081 Sum_probs=13.2
Q ss_pred HHHhhhCC-CCCCCCccccccccc
Q psy18025 76 EMDSNHQP-PDPKSTALTTTPLRL 98 (99)
Q Consensus 76 ELVq~LVs-~ct~~~~~~~~~~~~ 98 (99)
++|.+||+ +|++ +.++-.||
T Consensus 47 ~~lf~llG~~c~~---lataVaqL 67 (169)
T 2ifs_A 47 GSLFSFLGKKCVT---MSSAVVQL 67 (169)
T ss_dssp CCCCSSCCCCEEE---EEEEEEEE
T ss_pred HHHHHHhCCCceE---EEEEEEEE
Confidence 68888998 7764 55554443
No 6
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}
Probab=15.10 E-value=55 Score=22.35 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=14.3
Q ss_pred CccCchHHHHhhhCCCC
Q psy18025 69 NDLKSLDEMDSNHQPPD 85 (99)
Q Consensus 69 ~dlrnLDELVq~LVs~c 85 (99)
..|.||.+||+....+-
T Consensus 105 ~~F~SL~eLV~~Y~~~~ 121 (152)
T 2hmh_A 105 PRFDXVLKLVHHYMPPQ 121 (152)
T ss_dssp CCBSSHHHHHHHTCCCC
T ss_pred CccCCHHHHHHHHhhCc
Confidence 56889999999988774
No 7
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=15.04 E-value=97 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.4
Q ss_pred chHHhHHHHHHhhhhhhc
Q psy18025 16 MLIQLEREIDREIAADKK 33 (99)
Q Consensus 16 ~Lv~le~ei~~e~r~e~~ 33 (99)
.|-.|+|||=+|+|.+..
T Consensus 8 dle~~KqEIL~E~RkElq 25 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQ 25 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999999988753
No 8
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=14.16 E-value=70 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=18.8
Q ss_pred hhhhhcccCCCCCchHHhHHHHH
Q psy18025 3 VARRGAKLGMPAPMLIQLEREID 25 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~ 25 (99)
+.|+|.++|++.|.+-.|=+-|.
T Consensus 259 vv~~a~~~gv~~P~~~~l~~ll~ 281 (294)
T 3g17_A 259 IYRRAREHNLDTPYLDTIYSFLR 281 (294)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 56999999999999877766554
No 9
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=13.02 E-value=1.1e+02 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.9
Q ss_pred hhhhhcccCCCCCchHHhHHHHH
Q psy18025 3 VARRGAKLGMPAPMLIQLEREID 25 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~ 25 (99)
+.|+|.++|++.|.+-.+=+-|.
T Consensus 277 vv~~a~~~gv~~P~~~~l~~~l~ 299 (320)
T 3i83_A 277 AVRAGRRTRVAIPHLESVYALMK 299 (320)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 56999999999999877666655
No 10
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=13.00 E-value=78 Score=23.07 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.6
Q ss_pred hhhhhcccCCCCCchHHhHHHHH
Q psy18025 3 VARRGAKLGMPAPMLIQLEREID 25 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~ 25 (99)
+.|+|+++|++.|.+-.+=+-|.
T Consensus 278 vv~~a~~~gv~~P~~~~l~~ll~ 300 (312)
T 3hn2_A 278 PLAYGAREGIAMPRVEMLATLLE 300 (312)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 56999999999999877665554
Done!