Query psy18025
Match_columns 99
No_of_seqs 76 out of 78
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:34:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5ra1 d.82.4.1 (A:7-91) Grow 71.1 0.82 6E-05 29.2 1.6 19 72-90 2-22 (85)
2 d2c0sa1 a.30.7.1 (A:1-57) Hypo 28.9 11 0.00079 22.2 1.4 27 2-28 16-42 (57)
3 d1qcfa2 d.93.1.1 (A:146-248) H 12.7 48 0.0035 19.1 1.8 16 69-84 73-88 (103)
4 d1nvpd1 a.32.1.1 (D:3-53) Smal 12.6 29 0.0021 19.7 0.7 12 69-80 12-23 (51)
5 d1ku3a_ a.4.13.2 (A:) Sigma70 11.9 37 0.0027 19.0 1.0 26 5-30 33-58 (61)
6 d1nh2d1 a.32.1.1 (D:5-54) Smal 10.9 36 0.0026 19.2 0.7 12 69-80 14-25 (50)
7 d1e0ga_ d.7.1.1 (A:) Membrane- 10.6 22 0.0016 19.1 -0.4 14 3-16 13-26 (48)
8 d2isya1 a.4.5.24 (A:2-64) Iron 10.6 35 0.0025 19.2 0.5 23 4-26 27-49 (63)
9 d2ev0a1 a.4.5.24 (A:2-62) Mang 9.6 40 0.0029 18.7 0.5 23 3-25 24-46 (61)
10 d2j7za1 d.9.1.1 (A:1-67) Strom 9.3 72 0.0053 18.9 1.7 17 80-96 4-20 (67)
No 1
>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=71.09 E-value=0.82 Score=29.17 Aligned_cols=19 Identities=16% Similarity=-0.004 Sum_probs=15.2
Q ss_pred CchHHHHhhhCCC--CCCCCc
Q psy18025 72 KSLDEMDSNHQPP--DPKSTA 90 (99)
Q Consensus 72 rnLDELVq~LVs~--ct~~~~ 90 (99)
+.|||+|+.+++. |+|.+-
T Consensus 2 k~lD~~v~~~~~~~~C~C~~~ 22 (85)
T d1v5ra1 2 NLLDDAVKRISEDPPCKCPTK 22 (85)
T ss_dssp CHHHHHHHHHHTSSCCCSSSC
T ss_pred chHHHHHHHHhcCCCCcCCCc
Confidence 4699999999985 777654
No 2
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=28.95 E-value=11 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred chhhhhcccCCCCCchHHhHHHHHHhh
Q psy18025 2 KVARRGAKLGMPAPMLIQLEREIDREI 28 (99)
Q Consensus 2 e~~R~~arfG~~~P~Lv~le~ei~~e~ 28 (99)
|+.-.+++||+.-+..+.+-||||.=|
T Consensus 16 eLi~Lv~~YGf~h~kvl~~SQELD~LI 42 (57)
T d2c0sa1 16 ELIYLVEKYGFTHHKVISFSQELDRLL 42 (57)
T ss_dssp HHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 345678999999999999999999655
No 3
>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.75 E-value=48 Score=19.13 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=12.2
Q ss_pred CccCchHHHHhhhCCC
Q psy18025 69 NDLKSLDEMDSNHQPP 84 (99)
Q Consensus 69 ~dlrnLDELVq~LVs~ 84 (99)
..|.||.+||+..-.+
T Consensus 73 ~~F~sl~~LV~~y~~~ 88 (103)
T d1qcfa2 73 STFSTLQELVDHYKKG 88 (103)
T ss_dssp SCBSSHHHHHHHHTSS
T ss_pred cccCCHHHHHHHHhhC
Confidence 3489999999876543
No 4
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.57 E-value=29 Score=19.68 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=8.9
Q ss_pred CccCchHHHHhh
Q psy18025 69 NDLKSLDEMDSN 80 (99)
Q Consensus 69 ~dlrnLDELVq~ 80 (99)
+--.+|||||++
T Consensus 12 tL~dtLDeli~~ 23 (51)
T d1nvpd1 12 SLQESLDELIQS 23 (51)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 444579999986
No 5
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=11.88 E-value=37 Score=18.98 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.1
Q ss_pred hhhcccCCCCCchHHhHHHHHHhhhh
Q psy18025 5 RRGAKLGMPAPMLIQLEREIDREIAA 30 (99)
Q Consensus 5 R~~arfG~~~P~Lv~le~ei~~e~r~ 30 (99)
-.|..||++.-+.-|+|...-+.||.
T Consensus 33 eIa~~lgiS~erVrqi~~~al~kLR~ 58 (61)
T d1ku3a_ 33 EVGAYFGVTRERIRQIENKALRKLKY 58 (61)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence 45788899999999999998888875
No 6
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.86 E-value=36 Score=19.22 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=8.9
Q ss_pred CccCchHHHHhh
Q psy18025 69 NDLKSLDEMDSN 80 (99)
Q Consensus 69 ~dlrnLDELVq~ 80 (99)
+-..+|||||++
T Consensus 14 ~L~dtLDeli~~ 25 (50)
T d1nh2d1 14 SLVDALDTLISD 25 (50)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 445679999986
No 7
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=10.63 E-value=22 Score=19.12 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=10.1
Q ss_pred hhhhhcccCCCCCc
Q psy18025 3 VARRGAKLGMPAPM 16 (99)
Q Consensus 3 ~~R~~arfG~~~P~ 16 (99)
+...|.+||++.-.
T Consensus 13 l~~IA~~y~vs~~~ 26 (48)
T d1e0ga_ 13 LSSIAKRHGVNIKD 26 (48)
T ss_dssp HHHHHHHHTCCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 34688999998543
No 8
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.56 E-value=35 Score=19.20 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.3
Q ss_pred hhhhcccCCCCCchHHhHHHHHH
Q psy18025 4 ARRGAKLGMPAPMLIQLEREIDR 26 (99)
Q Consensus 4 ~R~~arfG~~~P~Lv~le~ei~~ 26 (99)
...|.++|+.+|...+|=+.+++
T Consensus 27 ~~iA~~L~vs~~SVt~mvkrL~~ 49 (63)
T d2isya1 27 ARIAERLDQSGPTVSQTVSRMER 49 (63)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHH
Confidence 46788999999998888776653
No 9
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=9.57 E-value=40 Score=18.71 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.8
Q ss_pred hhhhhcccCCCCCchHHhHHHHH
Q psy18025 3 VARRGAKLGMPAPMLIQLEREID 25 (99)
Q Consensus 3 ~~R~~arfG~~~P~Lv~le~ei~ 25 (99)
.+.+|.++|+.+|....|=+.++
T Consensus 24 ~~~iA~~L~vs~~SVs~mikrL~ 46 (61)
T d2ev0a1 24 VSDIAEALAVHPSSVTKMVQKLD 46 (61)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHH
Confidence 35678899999998887766655
No 10
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.33 E-value=72 Score=18.87 Aligned_cols=17 Identities=6% Similarity=-0.220 Sum_probs=12.7
Q ss_pred hhCCCCCCCCccccccc
Q psy18025 80 NHQPPDPKSTALTTTPL 96 (99)
Q Consensus 80 ~LVs~ct~~~~~~~~~~ 96 (99)
+|+.+|+|-....+.|-
T Consensus 4 Sl~~Rc~cr~~~s~vpr 20 (67)
T d2j7za1 4 SLSYRCPCRFFESHVAR 20 (67)
T ss_dssp TTCCSCSCSSCBSCCCG
T ss_pred chhhccchhhhhccCch
Confidence 68999999876666553
Done!