RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18025
(99 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.059
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 11 GMPAPML-------IQLEREIDR 26
G+P+PML Q++ +++
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNK 355
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding,
nucleoside B transferase; HET: MZR ADP; 1.55A
{Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A*
3b1r_A*
Length = 326
Score = 26.8 bits (60), Expect = 1.0
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 4 ARRGAKLGM-PAPMLIQLEREIDREIAADKKKLGFSD----NEYYDADLEDDLSDSDDEA 58
A+ G P L + R + + N+Y + D S+DE
Sbjct: 157 AQAGVPFIFDPGQGLPLFDGATLRRS------IELATYIAVNDYEAKLVCDKTGWSEDEI 210
Query: 59 QYGPLPQIVT 68
I+T
Sbjct: 211 ASRVQALIIT 220
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 27.1 bits (60), Expect = 1.0
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 32 KKKLGFSDNEYYDADLEDDLSDSDDEAQYGPLPQIVTNDLKSLDEMDSNHQPPDPKSTAL 91
+K++ +D D E+D D E P P+ SL+ + P P
Sbjct: 283 RKQMRGMPTFPWDEDPEED-GSPDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQA 341
Query: 92 TTTP 95
+ TP
Sbjct: 342 SETP 345
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 26.8 bits (60), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 3 VARRGAKLGMPAP-------MLIQLEREIDRE 27
+ + + G+ A + LER ++
Sbjct: 268 LLKEASLQGLDAVHLEFLYGSIKALERNTNKV 299
>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, serine/threonine-protein KI; HET:
ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*
Length = 173
Score = 26.0 bits (56), Expect = 1.8
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 1 MKVARRGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQY 60
++V R+ + M +QL + R D + + E S S +
Sbjct: 55 LRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSISNYRS 114
Query: 61 GPLPQIVTNDLKSLDEMDSNHQPPDPKSTALTTTP 95
E+ S+ + P
Sbjct: 115 CQRSDSDAEAQGKPSEVSLTSSVTSLDSSPVDVAP 149
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*
Length = 157
Score = 25.9 bits (56), Expect = 2.0
Identities = 13/95 (13%), Positives = 25/95 (26%)
Query: 1 MKVARRGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQY 60
++V R+ + M +QL + R D + + E S S +
Sbjct: 41 LRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSISNYRS 100
Query: 61 GPLPQIVTNDLKSLDEMDSNHQPPDPKSTALTTTP 95
E+ S+ + P
Sbjct: 101 CQRSDSDAEAQGKPSEVSLTSSVTSLDSSPVDVAP 135
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 25.9 bits (57), Expect = 2.4
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 30 ADKKKLGFSDNEYYDADLEDDLSDSDDEAQ 59
+KK+G + + + L + D Q
Sbjct: 439 VWRKKIGIHEGSSVNQAFANVLGSTVDNYQ 468
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A*
3gli_A*
Length = 343
Score = 25.6 bits (56), Expect = 2.9
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 20 LEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQYGPL 63
L +E + GF ++ + D D + Q L
Sbjct: 30 LLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSL 73
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Methanococcus maripaludis S2}
Length = 345
Score = 25.1 bits (55), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
Query: 55 DDEAQYGPLPQIVTNDLKSLDEM 77
DD GP+P ++T+ + + D+M
Sbjct: 249 DD----GPIPDVITDSMVAQDKM 267
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 24.5 bits (54), Expect = 6.1
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 3 VARRGAKLGMPAPML 17
V R L + PM
Sbjct: 290 VVREAEALRVDLPMY 304
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 24.5 bits (54), Expect = 6.7
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 3 VARRGAKLGMPAPML 17
+ RR + + P L
Sbjct: 259 IYRRAREHNLDTPYL 273
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 24.6 bits (54), Expect = 6.7
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 3 VARRGAKLGMPAPML 17
V R+G K + P
Sbjct: 285 VWRKGQKYNVATPFC 299
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 24.5 bits (54), Expect = 6.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 3 VARRGAKLGMPAPML 17
+ RRG LG+P P
Sbjct: 287 IVRRGDALGIPVPAN 301
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 24.5 bits (54), Expect = 7.7
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 3 VARRGAKLGMPAPML 17
GA+ G+ P +
Sbjct: 278 PLAYGAREGIAMPRV 292
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 24.1 bits (53), Expect = 8.5
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 3 VARRGAKLGMPAPML 17
+ RR G+ P
Sbjct: 264 LLRRARAHGIAVPEN 278
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 24.2 bits (53), Expect = 9.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 3 VARRGAKLGMPAPML 17
V G +G+P P +
Sbjct: 296 VREIGLHVGVPTPQI 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.132 0.367
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,547,125
Number of extensions: 85443
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 26
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)