RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18025
         (99 letters)



>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 503

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 18 IQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQYGPLPQIVTNDLKSLDEM 77
          ++L R+  R+ A  K++      +  D+D ED+ S S D+  Y  L Q +    + L+  
Sbjct: 30 VEL-RKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSD 88

Query: 78 DSNHQ 82
          D   Q
Sbjct: 89 DMQEQ 93


>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
          {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 571

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 9/40 (22%)

Query: 44 DADLEDDLSDSDDEAQYG---------PLPQIVTNDLKSL 74
          DADL+  ++ +                PL QI  +++K++
Sbjct: 1  DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNV 40


>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 296

 Score = 24.5 bits (52), Expect = 2.9
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 30  ADKKKLGFSDNEYYDADLEDDLSDSDDE 57
             +KK+G  +    +    + L  + D 
Sbjct: 234 VWRKKIGIHEGSSVNQAFANVLGSTVDN 261


>d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 84

 Score = 22.7 bits (49), Expect = 7.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 10/54 (18%)

Query: 6  RGAKLGMPAPMLIQLEREID-REIAA---DKKKLGFS------DNEYYDADLED 49
          R  ++ M AP+ + LE E D   IA     +KK+         D  + D  +E+
Sbjct: 26 RALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEE 79


>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE
           {Escherichia coli [TaxId: 562]}
          Length = 124

 Score = 22.7 bits (48), Expect = 7.6
 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 3/28 (10%)

Query: 3   VARRGAKLGMPAP---MLIQLEREIDRE 27
           + RR    G+  P    L ++ +  + E
Sbjct: 97  LLRRARAHGIAVPENTRLFEMVKRKESE 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,239
Number of extensions: 15137
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 14
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.6 bits)